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Conserved domains on  [gi|1914657920|ref|XP_036358736|]
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uncharacterized protein LOC118763360 isoform X49 [Octopus sinensis]

Protein Classification

chitin binding peritrophin-A domain-containing protein; glycoside hydrolase family 18 protein( domain architecture ID 10649518)

chitin binding peritrophin-A domain-containing protein similar to Blomia tropicalis major allergen Blo t 12 and Caenorhabditis elegans chondroitin proteoglycan 1| glycoside hydrolase family 18 protein similar to chitinase, which catalyzes the random endo-hydrolysis of the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
III super family cl31488
attachment protein
 422-491 2.62e-08

attachment protein


The actual alignment was detected with superfamily member PHA00370:

Pssm-ID: 164795 [Multi-domain]  Cd Length: 297  Bit Score: 57.23  E-value: 2.62e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1914657920  422 AKPENQTG-EGGNGRETaiGGSQGTGGATGGNqgTGGATGGSQGAGGATGGSQgvGGATGGSQGTGGVTGG 491
Cdd:PHA00370    80 ADKDGDGGgTGEGGSDT--GGDTGGGNTGGGS--GGGDTGGSGGGGSDGGGSE--GGSTGKSLTKEGVGAG 144
ChtBD2 smart00494
Chitin-binding domain type 2;
1402-1447 3.06e-06

Chitin-binding domain type 2;


:

Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 45.51  E-value: 3.06e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1402 IPCQ--PNSYYPKFKSISQFYQCSHGLLFLMQCPDKTVWNEASIKCVY 1447
Cdd:smart00494    1 NECPgrGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
103-150 9.75e-06

Chitin-binding domain type 2;


:

Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 43.97  E-value: 9.75e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920   103 ECQPcVTGGFYSHPNDQGRYYQCVYGVLLPKYCQSGTIWYQHTRTCIF 150
Cdd:smart00494    2 ECPG-RGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
1117-1164 2.25e-05

Chitin-binding domain type 2;


:

Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 43.20  E-value: 2.25e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1117 DCEPcQQGGYYPIIGSLSEFFQCSHGQLVPMKCPARTIWNNKIIRCVY 1164
Cdd:smart00494    2 ECPG-RGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
1035-1080 3.10e-04

Chitin-binding domain type 2;


:

Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.73  E-value: 3.10e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1035 EACEKGS--YYPKAESIAEFYQCSHGILFLMQCPESTIWHGESLRCIY 1080
Cdd:smart00494    1 NECPGRGdgLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
258-297 3.46e-04

Chitin-binding domain type 2;


:

Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.73  E-value: 3.46e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 1914657920   258 DTYYSKPGSVRQFYQCVHGWLFVRSCPTGTVWAGLLKECV 297
Cdd:smart00494    8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCD 47
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 194-237 4.14e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


:

Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 39.70  E-value: 4.14e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1914657920  194 CEN--DSYHSKTASLTHFYHCKNGWLYLMYCPSGTIWNSTLSACVY 237
Cdd:pfam01607    1 CAGkeDGYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDY 46
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 809-851 3.24e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


:

Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 37.01  E-value: 3.24e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1914657920  809 YYSKLGSNKQFYHCNYGVLYVLECPTQTVWNRRLGSCVYESNP 851
Cdd:pfam01607    8 YYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNV 50
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 382-416 4.28e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


:

Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 36.62  E-value: 4.28e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1914657920  382 FYQCLSGWLFIMECPLNTVWDGESTKCIYDELASA 416
Cdd:pfam01607   18 YYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNVVD 52
 
Name Accession Description Interval E-value
III PHA00370
attachment protein
 422-491 2.62e-08

attachment protein


Pssm-ID: 164795 [Multi-domain]  Cd Length: 297  Bit Score: 57.23  E-value: 2.62e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1914657920  422 AKPENQTG-EGGNGRETaiGGSQGTGGATGGNqgTGGATGGSQGAGGATGGSQgvGGATGGSQGTGGVTGG 491
Cdd:PHA00370    80 ADKDGDGGgTGEGGSDT--GGDTGGGNTGGGS--GGGDTGGSGGGGSDGGGSE--GGSTGKSLTKEGVGAG 144
Keratin_2_tail pfam16210
Keratin type II cytoskeletal 1 tail;
429-494 1.10e-06

Keratin type II cytoskeletal 1 tail;


Pssm-ID: 406591 [Multi-domain]  Cd Length: 135  Bit Score: 49.59  E-value: 1.10e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1914657920  429 GEGGNGRETAIGGSQGTGGAtGGNQGTGGATGGSQGAGGATGGSQG---VGGATGGSQGTGGVTGGSQG 494
Cdd:pfam16210   49 GGSGSGSYGSGGGSYGSGGG-GGSGSGGGSSGGHRGGSGGGGGSSGgrsGGGSSGGSFGSSGGRGSSSG 116
ChtBD2 smart00494
Chitin-binding domain type 2;
1402-1447 3.06e-06

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 45.51  E-value: 3.06e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1402 IPCQ--PNSYYPKFKSISQFYQCSHGLLFLMQCPDKTVWNEASIKCVY 1447
Cdd:smart00494    1 NECPgrGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
103-150 9.75e-06

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 43.97  E-value: 9.75e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920   103 ECQPcVTGGFYSHPNDQGRYYQCVYGVLLPKYCQSGTIWYQHTRTCIF 150
Cdd:smart00494    2 ECPG-RGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
1117-1164 2.25e-05

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 43.20  E-value: 2.25e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1117 DCEPcQQGGYYPIIGSLSEFFQCSHGQLVPMKCPARTIWNNKIIRCVY 1164
Cdd:smart00494    2 ECPG-RGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 1405-1447 4.23e-05

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 42.40  E-value: 4.23e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1914657920 1405 QPNSYYPKFKSISQFYQCSHGLLFLMQCPDKTVWNEASIKCVY 1447
Cdd:pfam01607    4 KEDGYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDY 46
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 111-151 2.48e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 40.09  E-value: 2.48e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1914657920  111 GFYSHPNDQGRYYQCVYGVLLPKYCQSGTIWYQHTRTCIFD 151
Cdd:pfam01607    7 GYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYP 47
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 1125-1169 2.85e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 40.09  E-value: 2.85e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1914657920 1125 GYYPIIGSLSEFFQCSHGQLVPMKCPARTIWNNKIIRCVYDRSQV 1169
Cdd:pfam01607    7 GYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNVV 51
ChtBD2 smart00494
Chitin-binding domain type 2;
1035-1080 3.10e-04

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.73  E-value: 3.10e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1035 EACEKGS--YYPKAESIAEFYQCSHGILFLMQCPESTIWHGESLRCIY 1080
Cdd:smart00494    1 NECPGRGdgLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
258-297 3.46e-04

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.73  E-value: 3.46e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 1914657920   258 DTYYSKPGSVRQFYQCVHGWLFVRSCPTGTVWAGLLKECV 297
Cdd:smart00494    8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCD 47
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 194-237 4.14e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 39.70  E-value: 4.14e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1914657920  194 CEN--DSYHSKTASLTHFYHCKNGWLYLMYCPSGTIWNSTLSACVY 237
Cdd:pfam01607    1 CAGkeDGYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDY 46
ChtBD2 smart00494
Chitin-binding domain type 2;
193-237 4.78e-04

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.35  E-value: 4.78e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 1914657920   193 PCEN--DSYHSKTASLTHFYHCKNGWLYLMYCPSGTIWNSTLSACVY 237
Cdd:smart00494    2 ECPGrgDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
TrbL COG3846
Type IV secretory pathway, TrbL components [Intracellular trafficking, secretion, and ...
 428-499 7.14e-04

Type IV secretory pathway, TrbL components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443056 [Multi-domain]  Cd Length: 443  Bit Score: 43.77  E-value: 7.14e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1914657920  428 TGEGGNGRETAIGGsqGTGGATGGNQGTGGAT---GGSQGAGGATG----GSQGVGgaTGGSQGTGGVTGGSQGTGGAT 499
Cdd:COG3846    277 TGAAAGGAAVAAGA--AAAAAAGGAAAAGGAAaarGGASAAGGAKAayslGSAGSG--SGAAGVAAGMGGVGRAGGSAA 351
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 1034-1080 9.85e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 38.55  E-value: 9.85e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1914657920 1034 CEACEKGsYYPKAESIAEFYQCSHGILFLMQCPESTIWHGESLRCIY 1080
Cdd:pfam01607    1 CAGKEDG-YYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDY 46
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 256-297 1.02e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 38.55  E-value: 1.02e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1914657920  256 LQDTYYSKPGSVRQFYQCVHGWLFVRSCPTGTVWAGLLKECV 297
Cdd:pfam01607    4 KEDGYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICD 45
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 809-851 3.24e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 37.01  E-value: 3.24e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1914657920  809 YYSKLGSNKQFYHCNYGVLYVLECPTQTVWNRRLGSCVYESNP 851
Cdd:pfam01607    8 YYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNV 50
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 382-416 4.28e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 36.62  E-value: 4.28e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1914657920  382 FYQCLSGWLFIMECPLNTVWDGESTKCIYDELASA 416
Cdd:pfam01607   18 YYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNVVD 52
ChtBD2 smart00494
Chitin-binding domain type 2;
807-847 6.32e-03

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 36.27  E-value: 6.32e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1914657920   807 YTYYSKLGSNKQFYHCNYGVLYVLECPTQTVWNRRLGSCVY 847
Cdd:smart00494    8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
 
Name Accession Description Interval E-value
III PHA00370
attachment protein
 422-491 2.62e-08

attachment protein


Pssm-ID: 164795 [Multi-domain]  Cd Length: 297  Bit Score: 57.23  E-value: 2.62e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1914657920  422 AKPENQTG-EGGNGRETaiGGSQGTGGATGGNqgTGGATGGSQGAGGATGGSQgvGGATGGSQGTGGVTGG 491
Cdd:PHA00370    80 ADKDGDGGgTGEGGSDT--GGDTGGGNTGGGS--GGGDTGGSGGGGSDGGGSE--GGSTGKSLTKEGVGAG 144
Keratin_2_tail pfam16210
Keratin type II cytoskeletal 1 tail;
429-494 1.10e-06

Keratin type II cytoskeletal 1 tail;


Pssm-ID: 406591 [Multi-domain]  Cd Length: 135  Bit Score: 49.59  E-value: 1.10e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1914657920  429 GEGGNGRETAIGGSQGTGGAtGGNQGTGGATGGSQGAGGATGGSQG---VGGATGGSQGTGGVTGGSQG 494
Cdd:pfam16210   49 GGSGSGSYGSGGGSYGSGGG-GGSGSGGGSSGGHRGGSGGGGGSSGgrsGGGSSGGSFGSSGGRGSSSG 116
ChtBD2 smart00494
Chitin-binding domain type 2;
1402-1447 3.06e-06

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 45.51  E-value: 3.06e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1402 IPCQ--PNSYYPKFKSISQFYQCSHGLLFLMQCPDKTVWNEASIKCVY 1447
Cdd:smart00494    1 NECPgrGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
III PHA00370
attachment protein
 372-494 5.74e-06

attachment protein


Pssm-ID: 164795 [Multi-domain]  Cd Length: 297  Bit Score: 49.92  E-value: 5.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914657920  372 FYPKLKSTIEfyQCLSGWLFimECPLNTVWDGESTK-------CIYDelasaLRGINAKPENQTGegGNGRETAIGGSQG 444
Cdd:PHA00370    14 FYTHEQTPEE--ICLAKPPI--DGVFNNVWKGDEGGryanyegCEYE-----ATGVTVCQNDGTV--CNGSWKPTGSADK 82

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1914657920  445 TGGaTGGNQGTGGATGGSQGaGGATGGSQGvGGATGGSQGtggvtGGSQG 494
Cdd:PHA00370    83 DGD-GGGTGEGGSDTGGDTG-GGNTGGGSG-GGDTGGSGG-----GGSDG 124
Keratin_2_tail pfam16210
Keratin type II cytoskeletal 1 tail;
415-496 7.83e-06

Keratin type II cytoskeletal 1 tail;


Pssm-ID: 406591 [Multi-domain]  Cd Length: 135  Bit Score: 46.89  E-value: 7.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914657920  415 SALRGINAKPENQTGEGGNGRETAIGGSQGTG--GATGGNQGTGGAtGGSQGAGGATGGSQGVGGATGGSQGtGGVTGGS 492
Cdd:pfam16210   23 GSSRGGGGGGGGSYGSGGGSYGSGGGGGSGSGsyGSGGGSYGSGGG-GGSGSGGGSSGGHRGGSGGGGGSSG-GRSGGGS 100


                   ....
gi 1914657920  493 QGTG 496
Cdd:pfam16210  101 SGGS 104
ChtBD2 smart00494
Chitin-binding domain type 2;
103-150 9.75e-06

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 43.97  E-value: 9.75e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920   103 ECQPcVTGGFYSHPNDQGRYYQCVYGVLLPKYCQSGTIWYQHTRTCIF 150
Cdd:smart00494    2 ECPG-RGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
Keratin_2_tail pfam16210
Keratin type II cytoskeletal 1 tail;
428-497 1.03e-05

Keratin type II cytoskeletal 1 tail;


Pssm-ID: 406591 [Multi-domain]  Cd Length: 135  Bit Score: 46.51  E-value: 1.03e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914657920  428 TGEGGNGRETAIGGSQGTGGATGGNQGTGGATGGSQGAGGatgGSQGVGGAtGGSQGTGGVTGGSQGTGG 497
Cdd:pfam16210   21 SGGSSRGGGGGGGGSYGSGGGSYGSGGGGGSGSGSYGSGG---GSYGSGGG-GGSGSGGGSSGGHRGGSG 86
ChtBD2 smart00494
Chitin-binding domain type 2;
1117-1164 2.25e-05

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 43.20  E-value: 2.25e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1117 DCEPcQQGGYYPIIGSLSEFFQCSHGQLVPMKCPARTIWNNKIIRCVY 1164
Cdd:smart00494    2 ECPG-RGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
Keratin_2_tail pfam16210
Keratin type II cytoskeletal 1 tail;
450-498 4.05e-05

Keratin type II cytoskeletal 1 tail;


Pssm-ID: 406591 [Multi-domain]  Cd Length: 135  Bit Score: 44.96  E-value: 4.05e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1914657920  450 GGNQGTGGATGGSQGAGGATGGSQGVGGATGGSQGTGGVTGGSQGTGGA 498
Cdd:pfam16210   23 GSSRGGGGGGGGSYGSGGGSYGSGGGGGSGSGSYGSGGGSYGSGGGGGS 71
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 1405-1447 4.23e-05

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 42.40  E-value: 4.23e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1914657920 1405 QPNSYYPKFKSISQFYQCSHGLLFLMQCPDKTVWNEASIKCVY 1447
Cdd:pfam01607    4 KEDGYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDY 46
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 439-498 1.25e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 44.40  E-value: 1.25e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914657920  439 IGGSQGTGGAtggnqGTGGATGGSQGAGGATGGSQGVGGATGGSQGTGGVTGGSQGTGGA 498
Cdd:PRK06958   108 LGGRGGSGGG-----GGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGA 162
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 111-151 2.48e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 40.09  E-value: 2.48e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1914657920  111 GFYSHPNDQGRYYQCVYGVLLPKYCQSGTIWYQHTRTCIFD 151
Cdd:pfam01607    7 GYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYP 47
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 411-499 2.61e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 43.48  E-value: 2.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914657920  411 DELASALRGINAKPENQTGEGGNGretaiggsqgtggatGGNQGTGGATGGSQGAGGATGGSQGVGGATGGSQGTG---- 486
Cdd:PRK07772   104 DEIGPSLRYATAKVTRASRGGGGG---------------GGGGGFGGGGGGSGGGGGGGGGGGAPGGGGAQASAPAddpw 168

                           90
                   ....*....|...
gi 1914657920  487 GVTGGSQGTGGAT 499
Cdd:PRK07772   169 SSAPASGGFGGGD 181
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 1125-1169 2.85e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 40.09  E-value: 2.85e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1914657920 1125 GYYPIIGSLSEFFQCSHGQLVPMKCPARTIWNNKIIRCVYDRSQV 1169
Cdd:pfam01607    7 GYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNVV 51
PTZ00146 PTZ00146
fibrillarin; Provisional
 440-495 3.01e-04

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 44.72  E-value: 3.01e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1914657920  440 GGSQGTGGATGGNQGTGGATGGSQGAGGATGGSQGVGGATGGSQGTGGvtGGSQGT 495
Cdd:PTZ00146     4 GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGG--GGPGKV 57
ChtBD2 smart00494
Chitin-binding domain type 2;
1035-1080 3.10e-04

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.73  E-value: 3.10e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 1914657920  1035 EACEKGS--YYPKAESIAEFYQCSHGILFLMQCPESTIWHGESLRCIY 1080
Cdd:smart00494    1 NECPGRGdgLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
ChtBD2 smart00494
Chitin-binding domain type 2;
258-297 3.46e-04

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.73  E-value: 3.46e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 1914657920   258 DTYYSKPGSVRQFYQCVHGWLFVRSCPTGTVWAGLLKECV 297
Cdd:smart00494    8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCD 47
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 194-237 4.14e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 39.70  E-value: 4.14e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1914657920  194 CEN--DSYHSKTASLTHFYHCKNGWLYLMYCPSGTIWNSTLSACVY 237
Cdd:pfam01607    1 CAGkeDGYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDY 46
PTZ00146 PTZ00146
fibrillarin; Provisional
 450-498 4.26e-04

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 43.95  E-value: 4.26e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1914657920  450 GGNQGTGGATGGSQGAGGATGGSQGVGGATGGSQGTGGVTGGSQGTGGA 498
Cdd:PTZ00146     4 GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGG 52
ChtBD2 smart00494
Chitin-binding domain type 2;
193-237 4.78e-04

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 39.35  E-value: 4.78e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 1914657920   193 PCEN--DSYHSKTASLTHFYHCKNGWLYLMYCPSGTIWNSTLSACVY 237
Cdd:smart00494    2 ECPGrgDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
TrbL COG3846
Type IV secretory pathway, TrbL components [Intracellular trafficking, secretion, and ...
 428-499 7.14e-04

Type IV secretory pathway, TrbL components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443056 [Multi-domain]  Cd Length: 443  Bit Score: 43.77  E-value: 7.14e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1914657920  428 TGEGGNGRETAIGGsqGTGGATGGNQGTGGAT---GGSQGAGGATG----GSQGVGgaTGGSQGTGGVTGGSQGTGGAT 499
Cdd:COG3846    277 TGAAAGGAAVAAGA--AAAAAAGGAAAAGGAAaarGGASAAGGAKAayslGSAGSG--SGAAGVAAGMGGVGRAGGSAA 351
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 1034-1080 9.85e-04

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 38.55  E-value: 9.85e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1914657920 1034 CEACEKGsYYPKAESIAEFYQCSHGILFLMQCPESTIWHGESLRCIY 1080
Cdd:pfam01607    1 CAGKEDG-YYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDY 46
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 256-297 1.02e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 38.55  E-value: 1.02e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1914657920  256 LQDTYYSKPGSVRQFYQCVHGWLFVRSCPTGTVWAGLLKECV 297
Cdd:pfam01607    4 KEDGYYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICD 45
TrbL COG3846
Type IV secretory pathway, TrbL components [Intracellular trafficking, secretion, and ...
 440-503 3.24e-03

Type IV secretory pathway, TrbL components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443056 [Multi-domain]  Cd Length: 443  Bit Score: 41.85  E-value: 3.24e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1914657920  440 GGSQ-------GTGGATGGnqGTGGATGGSQGAGGATGGSQGVGGATGGSQGTGGVTG----GSQGTGGATGGSQ 503
Cdd:COG3846    265 GGPQlgagaaaGTGAAAGG--AAVAAGAAAAAAAGGAAAAGGAAAARGGASAAGGAKAayslGSAGSGSGAAGVA 337
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 809-851 3.24e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 37.01  E-value: 3.24e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1914657920  809 YYSKLGSNKQFYHCNYGVLYVLECPTQTVWNRRLGSCVYESNP 851
Cdd:pfam01607    8 YYADPGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNV 50
PTZ00146 PTZ00146
fibrillarin; Provisional
 431-484 3.45e-03

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 41.26  E-value: 3.45e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1914657920  431 GGNGRETAIGGSQGTGGATGGNQGTGGATGGSQGAGGATGGSQGVGGATGGSQG 484
Cdd:PTZ00146     2 MGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55
Keratin_2_tail pfam16210
Keratin type II cytoskeletal 1 tail;
460-499 3.46e-03

Keratin type II cytoskeletal 1 tail;


Pssm-ID: 406591 [Multi-domain]  Cd Length: 135  Bit Score: 39.19  E-value: 3.46e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1914657920  460 GGSQGAGGATGGSQGVGGATGGSQGTGGVTGGSQGTGGAT 499
Cdd:pfam16210   23 GSSRGGGGGGGGSYGSGGGSYGSGGGGGSGSGSYGSGGGS 62
PTZ00146 PTZ00146
fibrillarin; Provisional
 446-498 3.63e-03

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 41.26  E-value: 3.63e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1914657920  446 GGATGGNQGTGGATGGSQGAGGATGGSQGVGGATGGSQGTGGvTGGSQGTGGA 498
Cdd:PTZ00146     4 GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGG-RGGGGGGGPG 55
PTZ00146 PTZ00146
fibrillarin; Provisional
 429-481 4.14e-03

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 40.87  E-value: 4.14e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1914657920  429 GEGGNGRETAIGGSQGTGGATGGNQGTGGATGGSQGAGGATGGSQGVGGATGG 481
Cdd:PTZ00146     3 GGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 382-416 4.28e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 36.62  E-value: 4.28e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1914657920  382 FYQCLSGWLFIMECPLNTVWDGESTKCIYDELASA 416
Cdd:pfam01607   18 YYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNVVD 52
PTZ00473 PTZ00473
Plasmodium Vir superfamily; Provisional
 417-499 5.15e-03

Plasmodium Vir superfamily; Provisional


Pssm-ID: 240430 [Multi-domain]  Cd Length: 420  Bit Score: 40.99  E-value: 5.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914657920  417 LRGINAKPENQTGEGGNGRETAIGGSQGTGGATGGNQGT--GGATGGSQGAGGAT-GGSQGVGGAT-GGSQGTGGVT-GG 491
Cdd:PTZ00473   311 GHDSRGPYNANYGGQFNSRSGRTGSSESIRGFTYDSSTTygGSSYGTSQTDSTSTyGSRSTFDSSTgGGSQSGGGSTyGG 390


                   ....*...
gi 1914657920  492 SQGTGGAT 499
Cdd:PTZ00473   391 SSTFDGSS 398
ChtBD2 smart00494
Chitin-binding domain type 2;
807-847 6.32e-03

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 36.27  E-value: 6.32e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1914657920   807 YTYYSKLGSNKQFYHCNYGVLYVLECPTQTVWNRRLGSCVY 847
Cdd:smart00494    8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDW 48
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 419-499 7.52e-03

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 40.92  E-value: 7.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914657920  419 GINAKPENQTGEGGNGRETAIGGSQGTGGATGGNQGTGGATGGSQGAGGATGGSQGVGGATGGSQGTGGVTGGSQGTGGA 498
Cdd:COG4625    244 GGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 323


                   .
gi 1914657920  499 T 499
Cdd:COG4625    324 G 324
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 431-498 9.93e-03

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 40.42  E-value: 9.93e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1914657920  431 GGNGRETAIGGSQGTGGATGGNQG-TGGATGGSQGAGGA-----TGGSQGVGGATGGSQGTGGVTGGSQGTGGA 498
Cdd:pfam15967    8 GGPGSTATAGGGFSFGAAAASNPGsTGGFSFGTLGAAPAatattTTATLGLGGGLFGQKPATGFTFGTPASSTA 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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