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Conserved domains on  [gi|1907165400|ref|XP_036021277|]
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cytokine receptor-like factor 2 isoform X2 [Mus musculus]

Protein Classification

fibronectin type III domain-containing protein( domain architecture ID 10045852)

fibronectin type III (FN3) domain-containing protein may be involved in specific interactions with other molecules through its FN3 domain

CATH:  2.60.40.10
Gene Ontology:  GO:0005515
PubMed:  19576999|9837732|8981327

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 15-103 2.32e-06

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 44.79  E-value: 2.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165400  15 PRPPWNVTLLWTPDGDVTVSWPAHSYLG---LDYEVQHRESNDDEdaWQTTSGPCCD---LTVGGLDPVRCYDFRVRASp 88
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGgpiTGYVVEYREKGSGD--WKEVEVTPGSetsYTLTGLKPGTEYEFRVRAV- 77

                          90
                  ....*....|....*
gi 1907165400  89 RAAHYGLEAQPSEWT 103
Cdd:cd00063    78 NGGGESPPSESVTVT 92
 
Name Accession Description Interval E-value
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 15-103 2.32e-06

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 44.79  E-value: 2.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165400  15 PRPPWNVTLLWTPDGDVTVSWPAHSYLG---LDYEVQHRESNDDEdaWQTTSGPCCD---LTVGGLDPVRCYDFRVRASp 88
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGgpiTGYVVEYREKGSGD--WKEVEVTPGSetsYTLTGLKPGTEYEFRVRAV- 77

                          90
                  ....*....|....*
gi 1907165400  89 RAAHYGLEAQPSEWT 103
Cdd:cd00063    78 NGGGESPPSESVTVT 92
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 15-86 1.49e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 42.22  E-value: 1.49e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165400   15 PRPPWNVTLLWTPDGDVTVSW-PAHSYLGLDYEVQHRESNDDEDA-WQTTSGPCCD--LTVGGLDPVRCYDFRVRA 86
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWePPPDDGITGYIVGYRVEYREEGSeWKEVNVTPSStsYTLTGLKPGTEYEFRVRA 76
fn3 pfam00041
Fibronectin type III domain;
17-86 5.08e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 38.16  E-value: 5.08e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165400  17 PPWNVTLLWTPDGDVTVSWPAHSYLG---LDYEVQHRESND-DEDAWQTTSGPCCDLTVGGLDPVRCYDFRVRA 86
Cdd:pfam00041   2 APSNLTVTDVTSTSLTVSWTPPPDGNgpiTGYEVEYRPKNSgEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQA 75
 
Name Accession Description Interval E-value
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 15-103 2.32e-06

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 44.79  E-value: 2.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907165400  15 PRPPWNVTLLWTPDGDVTVSWPAHSYLG---LDYEVQHRESNDDEdaWQTTSGPCCD---LTVGGLDPVRCYDFRVRASp 88
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGgpiTGYVVEYREKGSGD--WKEVEVTPGSetsYTLTGLKPGTEYEFRVRAV- 77

                          90
                  ....*....|....*
gi 1907165400  89 RAAHYGLEAQPSEWT 103
Cdd:cd00063    78 NGGGESPPSESVTVT 92
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 15-86 1.49e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 42.22  E-value: 1.49e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907165400   15 PRPPWNVTLLWTPDGDVTVSW-PAHSYLGLDYEVQHRESNDDEDA-WQTTSGPCCD--LTVGGLDPVRCYDFRVRA 86
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWePPPDDGITGYIVGYRVEYREEGSeWKEVNVTPSStsYTLTGLKPGTEYEFRVRA 76
fn3 pfam00041
Fibronectin type III domain;
17-86 5.08e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 38.16  E-value: 5.08e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907165400  17 PPWNVTLLWTPDGDVTVSWPAHSYLG---LDYEVQHRESND-DEDAWQTTSGPCCDLTVGGLDPVRCYDFRVRA 86
Cdd:pfam00041   2 APSNLTVTDVTSTSLTVSWTPPPDGNgpiTGYEVEYRPKNSgEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQA 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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