|
Name |
Accession |
Description |
Interval |
E-value |
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
54-665 |
0e+00 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 650.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 54 RAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRL 133
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 134 CKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQA 213
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 214 SQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQ 293
Cdd:pfam05557 161 QQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 294 EKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEV 373
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 374 RQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEME 453
Cdd:pfam05557 321 AQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEME 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 454 AQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSfcKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQG 533
Cdd:pfam05557 401 AQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYS--KEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQG 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 534 DYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSLPSSKEVAELRKQVESAELK 613
Cdd:pfam05557 479 DYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELK 558
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1907160835 614 NQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTESQYRLTSRYAEHQTDCLIFK 665
Cdd:pfam05557 559 NQRLKEVFQAKIQEFRDVCYMLTGYQIDITTNSQYRLTSMYAEHPDDYLLFK 610
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-609 |
3.13e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 3.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAAStnarnyerevdrnQELLARIRQLQECEATAEEKMREQLE 129
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL-------------EELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 130 RHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI- 208
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELe 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 209 ---QELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRmpRMERELKRLHEENTHLREMKETNGLLTEELEG 285
Cdd:COG1196 383 elaEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE--ALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 286 LQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSAR----- 360
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAyeaal 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 361 --GLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEA 438
Cdd:COG1196 541 eaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 439 EDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSfsfcKEEVDALRLKVEELEGERSRLEQE 518
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA----ALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 519 KQVLEMQMEKLTLQGDYNQSRTKVLHMSLnpisMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAAsslpsSK 598
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEA----LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-----ER 767
|
570
....*....|.
gi 1907160835 599 EVAELRKQVES 609
Cdd:COG1196 768 ELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-518 |
1.72e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 1.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 104 QELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRL 183
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 184 ESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEheqkikdlEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLH 263
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEE--------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 264 EENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLqswenldqtmglnlrtpEDLSRFVVELQQ 343
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE-----------------EEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 344 RELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNA--LLTKERDGMRAILGSYDsE 421
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVA-V 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 422 LTQTEYSTQLTQRLWEAEDMVQKVHahssEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDAL 501
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVV----EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410
....*....|....*..
gi 1907160835 502 RLKVEELEGERSRLEQE 518
Cdd:COG1196 605 ASDLREADARYYVLGDT 621
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
47-629 |
5.30e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 5.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 47 YHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERaastnaRNYEREVDRNQELLARIRQLQECEATAEEKMRE 126
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE------RQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 127 QLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQ 206
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 207 KIQE--LQASQDERAEHEQKIKDLEQKL-CLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKE-----TNGL 278
Cdd:TIGR02168 429 KLEEaeLKELQAELEELEEELEELQEELeRLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEnlegfSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 279 LTEELEGLQRK--------------------------------------------------------------------- 289
Cdd:TIGR02168 509 KALLKNQSGLSgilgvlselisvdegyeaaieaalggrlqavvvenlnaakkaiaflkqnelgrvtflpldsikgteiqg 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 290 -----LSRQEKMQEALVDLELEKEKLLAKLQSW-------ENLDQTMGLNLRTPEDlSRFVV------------------ 339
Cdd:TIGR02168 589 ndreiLKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPG-YRIVTldgdlvrpggvitggsak 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 340 -------------ELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTK 406
Cdd:TIGR02168 668 tnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 407 ERDGMRAILGSYDSELTQteystqLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSS 486
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEE------LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 487 AESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQE 566
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907160835 567 ECERLRGLVHALERggpipadleaasslpsskEVAELRKQVESAELKNQRLKEVFQTKIQEFR 629
Cdd:TIGR02168 902 ELRELESKRSELRR------------------ELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
164-530 |
3.94e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 3.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 164 GRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELqasQDERAEHEQKIKDLEQKLCLQEQDAAVV- 242
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL---EEELEQLRKELEELSRQISALRKDLARLe 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 243 KSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEglQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQ 322
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE--AEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 323 TMGLNLRTPEDLSRFVVELQQRELTLKEknnsitsSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNA 402
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEE-------QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 403 LLTKERDGMRAILGSYDSELtqteysTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELgvqkqrADTLEMELKMLKA 482
Cdd:TIGR02168 891 LLRSELEELSEELRELESKR------SELRRELEELREKLAQLELRLEGLEVRIDNLQERL------SEEYSLTLEEAEA 958
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1907160835 483 QTSSAESSFSFCKEEVDALRLKVEEL-------EGERSRLEQEKQVLEMQMEKLT 530
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDLT 1013
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
141-530 |
6.15e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 6.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 141 VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAE 220
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE---QEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 221 HEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERelkrLHEENTHLREMKETNGLLTEELEGLQRKLSRqekmqeal 300
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR----IPEIQAELSKLEEEVSRIEARLREIEQKLNR-------- 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 301 vdLELEKEKLLAKLQswenldqtmglnlrtpeDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQL 380
Cdd:TIGR02169 824 --LTLEKEYLEKEIQ-----------------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 381 LEERKKRETHEALARRLQKRNALLTKERDGMRAILGsydseltqteystQLTQRLWEAEDMVqkvhahsSEMEAQLSQAL 460
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS-------------ELKAKLEALEEEL-------SEIEDPKGEDE 944
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 461 EELGvQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 530
Cdd:TIGR02169 945 EIPE-EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-320 |
1.09e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 2 EDLGENTTVLSSLRSLNNFISQRM-EGTSGLDVSTSASGSLQKQYE----YHMQLEERAEQIRSKSYLIQVEREKMQMEL 76
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLdELSQELSDASRKIGEIEKEIEqleqEEEKLKERLEELEEDLSSLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 77 SHKRARVELERAASTNARNYEREVDRN------QELLARIRQLQECEATAEEKMRE---QLERHRLCKQNLDAVSQ---- 143
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEALNDLEARlshsriPEIQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQelqe 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 144 QLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEH-- 221
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRls 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 222 --EQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEEnthLREMKETNGLLTEELEglqRKLSRQEKMQEA 299
Cdd:TIGR02169 921 elKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE---IRALEPVNMLAIQEYE---EVLKRLDELKEK 994
|
330 340
....*....|....*....|.
gi 1907160835 300 LVDLELEKEKLLAKLQSWENL 320
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKK 1015
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
141-518 |
7.77e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 7.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 141 VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELkEQLELQQRKWQEANQKIQE-LQASQDERA 219
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLEEkIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 220 EHEQKIKDLEQKlclqeqdAAVVKSMKSELMRMPRMERELKRLHEEnthLREMKETNGLLTEELEGLQRKLSRQEKMQEA 299
Cdd:PRK03918 270 ELKKEIEELEEK-------VKELKELKEKAEEYIKLSEFYEEYLDE---LREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 300 LVDLELEKEKLLAKL-------QSWENLDQTMG--------LNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEK 364
Cdd:PRK03918 340 LEELKKKLKELEKRLeeleerhELYEEAKAKKEelerlkkrLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 365 VQQQLQD---EVRQA-------NAQLLEERKKR--ETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLT 432
Cdd:PRK03918 420 EIKELKKaieELKKAkgkcpvcGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 433 QRLWEAEDMVQKVHAHSSEmeaQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESsfsfCKEEVDALRLKVEELEGER 512
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEEL 572
|
....*.
gi 1907160835 513 SRLEQE 518
Cdd:PRK03918 573 AELLKE 578
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-523 |
1.02e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKSYLIQVEREKMQMELSH-KRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQL 128
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEaEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 129 ERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI 208
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 209 QELQASQDERAEHEQ--KIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEG- 285
Cdd:COG1196 494 LLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGr 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 286 -------------LQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQR--ELTLKE 350
Cdd:COG1196 574 atflpldkiraraALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrEVTLEG 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 351 KNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILgsydSELTQTEYSTQ 430
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE----EELEEEALEEQ 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 431 LTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAEssfsfckEEVDALRLKVEELEG 510
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLAI-------EEYEELEERYDFLSE 802
|
490
....*....|...
gi 1907160835 511 ERSRLEQEKQVLE 523
Cdd:COG1196 803 QREDLEEARETLE 815
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-334 |
2.31e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 40 SLQKQYEYHMQLEERAEQIRSKSYLIQVEREKmqmelSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEAT 119
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLE-----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 120 AEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQR 199
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 200 KWQEANQKIQEL-QASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmPRMERELKRLHEENTHLR------EM 272
Cdd:TIGR02168 359 ELEELEAELEELeSRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL---ERLEDRRERLQQEIEELLkkleeaEL 435
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907160835 273 KETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDL 334
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
126-537 |
3.91e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 3.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 126 EQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQ--LSAMDQKVQVKRLESEKQELKEQLELQQRKWQE 203
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELReeLEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 204 ANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVvksmkSELMRMPRMERELKRLHEENTHLREMKETnglLTEEL 283
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSL-----ATEEELQDLAEELEELQQRLAELEEELEE---AQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 284 EGLQRKLSRQEKMQEALVDleleKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLE 363
Cdd:COG4717 223 EELEEELEQLENELEAAAL----EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 364 KVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILgSYDSELTQTEYSTQLTQRLWEAEDMVQ 443
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ-ELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 444 KVHAHSSEMEAQLSQALEELGVQKQRADTLEMEL--KMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQV 521
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLeeLLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAE 457
|
410
....*....|....*.
gi 1907160835 522 LEMQMEKLTLQGDYNQ 537
Cdd:COG4717 458 LEAELEQLEEDGELAE 473
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-523 |
4.80e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 4.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 155 AREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQ-EANQKIQELQASQDERAEHEQKIKDLEQKLC 233
Cdd:TIGR02169 175 ALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 234 -LQEQDAAVVKSMKSELMRMPRMERELKRLHEENThlREMKETNGLLTEELEGLQR----KLSRQEKMQEALVDLELEKE 308
Cdd:TIGR02169 255 kLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ--LRVKEKIGELEAEIASLERsiaeKERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 309 KLLAKLqswenldqtmglnlrtpEDLSRFVVELQQRELTLKEKnnsITSSARGLEKVQQQLQdEVRQANAQLLEERKKRE 388
Cdd:TIGR02169 333 KLLAEI-----------------EELEREIEEERKRRDKLTEE---YAELKEELEDLRAELE-EVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 389 thEALARRLQKRNALLTKERdgmrailgsydseltqteystQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQ 468
Cdd:TIGR02169 392 --EKLEKLKREINELKRELD---------------------RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1907160835 469 RADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLE 523
Cdd:TIGR02169 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
51-616 |
1.65e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 51 LEERAEQIRSKSYLIQV-EREKMQMELSHKRARVE-LERAASTNARNYEREVDRNQELLARIRQLQECEATA-EEKMREQ 127
Cdd:TIGR02169 220 KREYEGYELLKEKEALErQKEAIERQLASLEEELEkLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGEL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 128 LERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQk 207
Cdd:TIGR02169 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 208 iqELQASQDERAEHEQKIKDLEQKL-CLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEG- 285
Cdd:TIGR02169 379 --EFAETRDELKDYREKLEKLKREInELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWk 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 286 LQRKLSRQEKMQEALVDLELEKEKLLAKLQSwenLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKV 365
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSK---LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 366 QQQLQ------------------DEVRQANAQLLEERK----------KRETHEALARRLQK------------------ 399
Cdd:TIGR02169 534 GERYAtaievaagnrlnnvvvedDAVAKEAIELLKRRKagratflplnKMRDERRDLSILSEdgvigfavdlvefdpkye 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 400 -------RNALLTKERDGMRAILGSY-----DSEL----------TQTEYSTQLTQRLWEAEdmVQKVHAHSSEMEAQLS 457
Cdd:TIGR02169 614 pafkyvfGDTLVVEDIEAARRLMGKYrmvtlEGELfeksgamtggSRAPRGGILFSRSEPAE--LQRLRERLEGLKRELS 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 458 QALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQ 537
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 538 SRTKVLHMSLNPI----SMARQRQHEDH-DRLQEECERLRGLVHALErggpipADLEAASSLPSSKEVAELRKQVESAEL 612
Cdd:TIGR02169 772 EDLHKLEEALNDLearlSHSRIPEIQAElSKLEEEVSRIEARLREIE------QKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
....
gi 1907160835 613 KNQR 616
Cdd:TIGR02169 846 KEQI 849
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
94-619 |
4.07e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 94 RNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLdavsQQLREQEDSLASAREMISSLKGRVSELQLSA 173
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 174 MDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLclqeqdaavVKSMKSELmRMP 253
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL---------DELREIEK-RLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 254 RMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALvdlelekEKLLAKLQSWENLDQTMGLnlRTPED 333
Cdd:PRK03918 318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY-------EEAKAKKEELERLKKRLTG--LTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 334 LSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQD---EVRQA-------NAQLLEERKKR--ETHEALARRLQKRN 401
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKaieELKKAkgkcpvcGRELTEEHRKEllEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 402 ALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEmeaQLSQALEELGVQKQRADTLEMELKMLK 481
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 482 AQTSSAESsfsfCKEEVDALRLKVEELEGERSRLEQE------KQVLEMQMEKLTLQGDYN------------QSRTKVL 543
Cdd:PRK03918 546 KELEKLEE----LKKKLAELEKKLDELEEELAELLKEleelgfESVEELEERLKELEPFYNeylelkdaekelEREEKEL 621
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907160835 544 HMSLNPISMARqrqhEDHDRLQEECERLRGLVHALERGGPiPADLEAASS--LPSSKEVAELRKQVESAELKNQRLKE 619
Cdd:PRK03918 622 KKLEEELDKAF----EELAETEKRLEELRKELEELEKKYS-EEEYEELREeyLELSRELAGLRAELEELEKRREEIKK 694
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
96-462 |
1.23e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 96 YEREVDRNQELLARIRQLQECEATAEEKMREQLER---HRLCKQNLDAVSQQLREQEDSLASAREmisslkgRVSELQLS 172
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERlrrEREKAERYQALLKEKREYEGYELLKEK-------EALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 173 AMDQkvQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQkIKDLEQKLCLQEQDAAVVKSMKSELMRM 252
Cdd:TIGR02169 241 AIER--QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 253 PRMERELKRLHEEnthLREMKETNGLLTEELEGLQRklsRQEKMQEALVDLELEKEKLLAKLQSWENLDQTmglnlrTPE 332
Cdd:TIGR02169 318 EDAEERLAKLEAE---IDKLLAEIEELEREIEEERK---RRDKLTEEYAELKEELEDLRAELEEVDKEFAE------TRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 333 DLSRFVVELQQreltLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLleERKKRETHEALARRLQKRNALLTKERDGMR 412
Cdd:TIGR02169 386 ELKDYREKLEK----LKREINELKRELDRLQEELQRLSEELADLNAAI--AGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1907160835 413 --AILGSYDSELtqteysTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEE 462
Cdd:TIGR02169 460 laADLSKYEQEL------YDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
139-572 |
1.84e-06 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 51.34 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 139 DAVSQQLREQEDSLASaREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASqder 218
Cdd:PRK10246 409 DEVAAALAQHAEQRPL-RQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTI---- 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 219 AEHEQKIKDLEQK-----------LCLQEQDAAVVKSMKSEL----MRMPRMERELKRLHEENTHLREmketngllteEL 283
Cdd:PRK10246 484 CEQEARIKDLEAQraqlqagqpcpLCGSTSHPAVEAYQALEPgvnqSRLDALEKEVKKLGEEGAALRG----------QL 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 284 EGLQRKLSRQEKMQEALvdleLEKEKLLAklQSWENLDQTMGLNLRTPEDLSRFVVELQQRE-------------LTLKE 350
Cdd:PRK10246 554 DALTKQLQRDESEAQSL----RQEEQALT--QQWQAVCASLNITLQPQDDIQPWLDAQEEHErqlrllsqrhelqGQIAA 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 351 KNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKK------RETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQ 424
Cdd:PRK10246 628 HNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEaswlatRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDL 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 425 TEYSTQLTQRLWeaedmvQKVHAHSSEMEAQLSQALEELGVQKQRADTLEmelkmlkAQTSSAESSFSFCKEEVDALRLK 504
Cdd:PRK10246 708 PHSEETVALDNW------RQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQ-------AQFDTALQASVFDDQQAFLAALL 774
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907160835 505 VEElegERSRLEQEKQVLEMQMEKL-TLQGDYNQSRTKVLHM---SLNPISMARQRQHEdhdrLQEECERLR 572
Cdd:PRK10246 775 DEE---TLTQLEQLKQNLENQRQQAqTLVTQTAQALAQHQQHrpdGLDLTVTVEQIQQE----LAQLAQQLR 839
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
169-402 |
2.83e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 169 LQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAEHEQKIKDLEQKLCLQEQDAAvvksmkse 248
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALL---KQLAALERRIAALARRIRALEQELA-------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 249 lmrmpRMERELKRLHEENTHLR-EMKETNGLLTEELEGLQRK--------LSRQEKMQEALVDLELEKEKLLAKLQSWEN 319
Cdd:COG4942 80 -----ALEAELAELEKEIAELRaELEAQKEELAELLRALYRLgrqpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 320 LDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQK 399
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
...
gi 1907160835 400 RNA 402
Cdd:COG4942 235 EAA 237
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
279-580 |
3.21e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 279 LTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSwenldqtmglnlrtpEDLSRFVVELQQRELTLKEKNNSITSS 358
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERYKELKAELRELELALLV---------------LRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 359 ARGLEKVQQQ---LQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEystqltQRL 435
Cdd:TIGR02168 259 TAELQELEEKleeLRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE------SKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 436 WEAEDMVQkvhahssEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRL 515
Cdd:TIGR02168 333 DELAEELA-------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 516 EQEKQVLEMQMEKL-----TLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALER 580
Cdd:TIGR02168 406 EARLERLEDRRERLqqeieELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
52-539 |
4.26e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 4.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 52 EERAEQIRSksylIQVEREKMQMELSH-KRARVELERAASTNARNYEREVDRNQELLARIrQLQECEATAEEKMREQLER 130
Cdd:PRK02224 247 EERREELET----LEAEIEDLRETIAEtEREREELAEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 131 HRlckqnlDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQE 210
Cdd:PRK02224 322 RD------EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 211 LQASQDERAEHEQKIKDLEQKLcLQEQDAAV--VKSMKSELMRMPRMERELKRLHEENTHLREMKETNGllTEELEGLQR 288
Cdd:PRK02224 396 LRERFGDAPVDLGNAEDFLEEL-REERDELRerEAELEATLRTARERVEEAEALLEAGKCPECGQPVEG--SPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 289 KLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQ 368
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 369 LQDEVRQANAQLLEERKKRETHEALARRLQKrnalLTKERDGMRAI------LGSYDSEL-TQTEYSTQLTQRLWEAEDM 441
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAE----LKERIESLERIrtllaaIADAEDEIeRLREKREALAELNDERRER 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 442 VQKVHAHSSEMEAQLSQA-LEELGVQKQRADT----LEMELKMLKAQTSSAESSFSFCKEEVDALrlkvEELEGERSRLE 516
Cdd:PRK02224 629 LAEKRERKRELEAEFDEArIEEAREDKERAEEyleqVEEKLDELREERDDLQAEIGAVENELEEL----EELRERREALE 704
|
490 500
....*....|....*....|....
gi 1907160835 517 QEKQVLE-MQMEKLTLQGDYNQSR 539
Cdd:PRK02224 705 NRVEALEaLYDEAEELESMYGDLR 728
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
151-386 |
6.40e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 6.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 151 SLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQAsqdERAEHEQKIKDLEQ 230
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ---ELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 231 KLCLQEQDAAVVKSMKSELM----RMPRMERELKRLHEEN-----THLREMKETNGLLTEELEGLQRKLSRQEKMQEALV 301
Cdd:COG4942 91 EIAELRAELEAQKEELAELLralyRLGRQPPLALLLSPEDfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 302 DLELEKEKLLAKLQswenldqtmglnlRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLL 381
Cdd:COG4942 171 AERAELEALLAELE-------------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*
gi 1907160835 382 EERKK 386
Cdd:COG4942 238 AAAER 242
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
113-414 |
1.13e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 113 LQECEATAEEKMREQLERHRlckqnlDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKE 192
Cdd:pfam12128 587 LKRIDVPEWAASEEELRERL------DKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFD 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 193 QLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDaavvksmksELMRMPRMERELKRLHEENthlrEM 272
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQK---------EQKREARTEKQAYWQVVEG----AL 727
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 273 KETNGLLTEELEGLQRKLSRQEK-----MQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQ----Q 343
Cdd:pfam12128 728 DAQLALLKAAIAARRSGAKAELKaletwYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQetwlQ 807
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907160835 344 RELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALArrlqkrNALLTKERDGMRAI 414
Cdd:pfam12128 808 RRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRL------SENLRGLRCEMSKL 872
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
99-554 |
1.62e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 99 EVDRNQELLARIRQlqECEATAEEKM------REQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLS 172
Cdd:pfam15921 427 EVQRLEALLKAMKS--ECQGQMERQMaaiqgkNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 173 AMDQKVQVKRLESEKQELKEQLELqqrkwqeanqKIQELQASQDErAEHEQKIKDLEQKLCLQ-EQDAAVVKSMKSELMR 251
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDL----------KLQELQHLKNE-GDHLRNVQTECEALKLQmAEKDKVIEILRQQIEN 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 252 MPRMERELKR----LHEENTHLREMKETNGLLTEELEGLQ-RKLSRQEKMQEALVDLELEKEKLL----AKLQSWENLDQ 322
Cdd:pfam15921 574 MTQLVGQHGRtagaMQVEKAQLEKEINDRRLELQEFKILKdKKDAKIRELEARVSDLELEKVKLVnagsERLRAVKDIKQ 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 323 TMGLNLRTPEDLSRFVVELQQRELTLKEknnSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNA 402
Cdd:pfam15921 654 ERDQLLNEVKTSRNELNSLSEDYEVLKR---NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM 730
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 403 LLTKERDGMRAILGSYDSELtqteystqltQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRadtLEMELKMLKA 482
Cdd:pfam15921 731 GMQKQITAKRGQIDALQSKI----------QFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNK---MAGELEVLRS 797
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907160835 483 QTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQ--MEKLTLQGDYNQSRTKVLHMSLNPISMAR 554
Cdd:pfam15921 798 QERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQhtLDVKELQGPGYTSNSSMKPRLLQPASFTR 871
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
51-567 |
1.85e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 51 LEERAEQIRSKS-----YLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLAR---------IRQLQEC 116
Cdd:pfam15921 243 VEDQLEALKSESqnkieLLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnqnsmyMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 117 EATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELqlsamDQKVQ--VKRLESEKQELKEQL 194
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL-----DDQLQklLADLHKREKELSLEK 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 195 ELQQRKWQEANQK---IQELQASQDERAEHEQKIKdleqklclqeqdaAVVKSMKSELmrMPRMERELKRLHEENTHLRE 271
Cdd:pfam15921 398 EQNKRLWDRDTGNsitIDHLRRELDDRNMEVQRLE-------------ALLKAMKSEC--QGQMERQMAAIQGKNESLEK 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 272 M----------KETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKL-------LAKLQSWENLDQTMGLNLRTPEDL 334
Cdd:pfam15921 463 VssltaqlestKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAieatnaeITKLRSRVDLKLQELQHLKNEGDH 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 335 SRFV-VELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRA 413
Cdd:pfam15921 543 LRNVqTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRE 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 414 ILGSY-DSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEME---AQLSQALEELGVQKQ----RADTLEMELKMLKAQTS 485
Cdd:pfam15921 623 LEARVsDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKtsrNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQLK 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 486 SAESsfsfckeEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQ 565
Cdd:pfam15921 703 SAQS-------ELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLS 775
|
..
gi 1907160835 566 EE 567
Cdd:pfam15921 776 QE 777
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
104-630 |
1.98e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 104 QELLARIRQLQECEATAEEKMREQleRHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQ-VKR 182
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQR--RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDrLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 183 LESEKQELKEQLELQQRKWQEANQKIQELQASQDE--------RAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmpr 254
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPAsaeefaalRAEAAALLEALEEELEALEEALAEAEAALRDL----- 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 255 mERELKRLHEEnthLREMKETNGLLTEELEGLQRKLSRQEKMQEA-------LVDLELEKE------------------- 308
Cdd:COG4913 418 -RRELRELEAE---IASLERRKSNIPARLLALRDALAEALGLDEAelpfvgeLIEVRPEEErwrgaiervlggfaltllv 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 309 --KLLAKLQSWenLDQT-MGLNLRTpEDLSRFVVELQQREL---TLKEKNNSITSSARG-LEKVQQQLQDEVRQANAQLL 381
Cdd:COG4913 494 ppEHYAAALRW--VNRLhLRGRLVY-ERVRTGLPDPERPRLdpdSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSPEEL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 382 EERKKRETHEALARRLQKRNALLTKERDGMRAILGsydseltqteystqltqrlWEAEDMVQkvhahssEMEAQLSQALE 461
Cdd:COG4913 571 RRHPRAITRAGQVKGNGTRHEKDDRRRIRSRYVLG-------------------FDNRAKLA-------ALEAELAELEE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 462 ELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVD--ALRLKVEELEGERSRLEQEKQVLemqmEKLTLQGDYNQSR 539
Cdd:COG4913 625 ELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvaSAEREIAELEAELERLDASSDDL----AALEEQLEELEAE 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 540 TKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIP------ADLEAASSLPSSKEVAE-LRKQVESAEL 612
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleERFAAALGDAVERELREnLEERIDALRA 780
|
570
....*....|....*...
gi 1907160835 613 KNQRLKEVFQTKIQEFRK 630
Cdd:COG4913 781 RLNRAEEELERAMRAFNR 798
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
88-354 |
5.17e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 5.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 88 AASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRlckQNLDAVSQQLREQEDSLASAREMISSLKGRVS 167
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 168 ELQlsamdqkvqvKRLESEKQELKEQLELQQRKwqeANQKIQELQASQDERAEHEQKIKDLEQklcLQEQDAAVVKSMKS 247
Cdd:COG4942 94 ELR----------AELEAQKEELAELLRALYRL---GRQPPLALLLSPEDFLDAVRRLQYLKY---LAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 248 ElmrmprmerelkrlheenthLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLN 327
Cdd:COG4942 158 D--------------------LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
250 260
....*....|....*....|....*...
gi 1907160835 328 LRTPE-DLSRFVVELQQRELTLKEKNNS 354
Cdd:COG4942 218 LQQEAeELEALIARLEAEAAAAAERTPA 245
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
258-528 |
6.16e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.04 E-value: 6.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 258 ELKRLHEENTHLREM-KETNGLLTEELEGLQRKLSRQ-EKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTpedLS 335
Cdd:pfam07888 45 ELLQAQEAANRQREKeKERYKRDREQWERQRRELESRvAELKEELRQSREKHEELEEKYKELSASSEELSEEKDA---LL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 336 RFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAIL 415
Cdd:pfam07888 122 AQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 416 GSYDSELTQTEYS-TQLTQRLWEAedmvQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFC 494
Cdd:pfam07888 202 AQRDTQVLQLQDTiTTLTQKLTTA----HRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQA 277
|
250 260 270
....*....|....*....|....*....|....*...
gi 1907160835 495 KEEVDALRLKVEE----LEGERSRLEQEKQVLEMQMEK 528
Cdd:pfam07888 278 RLQAAQLTLQLADaslaLREGRARWAQERETLQQSAEA 315
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
180-584 |
6.52e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 6.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 180 VKRLESEKQEL----KEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRM 255
Cdd:COG4717 48 LERLEKEADELfkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 256 ERELKRLHEENTHLREmketnglLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLdqtmgLNLRTPEDLS 335
Cdd:COG4717 128 LPLYQELEALEAELAE-------LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQ-----LSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 336 RFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALAR--------------RLQKRN 401
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 402 ALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKV------------HAHSSEMEAQLSQALEELGVQKQR 469
Cdd:COG4717 276 AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEeleellaalglpPDLSPEELLELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 470 ADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEgERSRLEQEKQVLEMQMEKL--TLQGDYNQSRTKVLHMSL 547
Cdd:COG4717 356 AEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELlgELEELLEALDEEELEEEL 434
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907160835 548 NPISMARQRQHEDHDRLQEECERLRGLVHALERGGPI 584
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
104-343 |
1.01e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 104 QELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVS--QQLREQEDSLASAREMISSLKGRVSELQLSAMD------ 175
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDDlaalee 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 176 ----QKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQAsqdeRAEHEQKIKDLEQKLCLQEqdaavvksMKSELMR 251
Cdd:COG4913 693 qleeLEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD----RLEAAEDLARLELRALLEE--------RFAAALG 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 252 MPRMERELKRLHEENTHLREMKETnglLTEELEGLQRKLSRQ--EKMQEALVDLE-----------LEKEKLLAKLQSWE 318
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNR---AEEELERAMRAFNREwpAETADLDADLEslpeylalldrLEEDGLPEYEERFK 837
|
250 260
....*....|....*....|....*
gi 1907160835 319 NLdqtmgLNLRTPEDLSRFVVELQQ 343
Cdd:COG4913 838 EL-----LNENSIEFVADLLSKLRR 857
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
85-543 |
1.57e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 85 LERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISslkg 164
Cdd:PRK04863 263 ITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN---- 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 165 rvseLQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQAsQDERAEHEQkikdleqkLCLQEQDAAVVKS 244
Cdd:PRK04863 339 ----LVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEA-RAEAAEEEV--------DELKSQLADYQQA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 245 MkSELMRMPRMERELKRLheenthLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKllaKLQSWEN----L 320
Cdd:PRK04863 406 L-DVQQTRAIQYQQAVQA------LERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ---KLSVAQAahsqF 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 321 DQTMGLNLRTPEDLSRFVVELQQRELTLKEKNnsitssarglekvQQQLQDEVRQANAQLLEERKKRETHEALARRLQKR 400
Cdd:PRK04863 476 EQAYQLVRKIAGEVSRSEAWDVARELLRRLRE-------------QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 401 NalltkerdgMRAILGSYDSELTQTEYStQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRAD---TLEMEL 477
Cdd:PRK04863 543 C---------KRLGKNLDDEDELEQLQE-ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPawlAAQDAL 612
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907160835 478 KMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVL 543
Cdd:PRK04863 613 ARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNAL 678
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
15-427 |
1.58e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 15 RSLNNFISQRMEGTSGLDVSTSASGSLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNAR 94
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 95 NYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAM 174
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 175 DQKVQVKRLESEKQELKEQLELQQRKW-----------------------------------------------QEANQK 207
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLllliaaallallglggsllsliltiagvlflvlgllallflllarekASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 208 IQELQASQDERAEHEQKIKDLEQKLCLQEQDAavvksmKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQ 287
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLS------PEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 288 RKLSRQEKMQEALVDLELEKEKLLAKLQSWENldqtmglNLRTPEDLSRFVVELQQRElTLKEKNNSITSSARGLEKVQQ 367
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEE-------QLEELLGELEELLEALDEE-ELEEELEELEEELEELEEELE 449
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 368 QLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEY 427
Cdd:COG4717 450 ELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
40-527 |
1.83e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 40 SLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQmelSHKRARVELERA-ASTNARNYEREVDRNQELLARIRQLQECEA 118
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAE---RYAAARERLAELeYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 119 TAEEKMREQLERHRLCKQNLDAVSQQLREQE-DSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQ 197
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 198 QRKWQEANQKIQELQAS-QDERAEHEQKIKDLEQKLclqEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLRE----- 271
Cdd:COG4913 386 RAEAAALLEALEEELEAlEEALAEAEAALRDLRREL---RELEAEIASLERRKSNIPARLLALRDALAEALGLDEaelpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 272 ------MKETNGLLTEELEGL-----------------------QRKLSRQ------EKMQEALVDLELEKEKLLAKLQS 316
Cdd:COG4913 463 vgelieVRPEEERWRGAIERVlggfaltllvppehyaaalrwvnRLHLRGRlvyervRTGLPDPERPRLDPDSLAGKLDF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 317 WEN-----LDQTMGLNL-----RTPEDLSRFvvelqQRELTLkeknNSITSSARGLekvqQQLQDEVRQANAQLL--EER 384
Cdd:COG4913 543 KPHpfrawLEAELGRRFdyvcvDSPEELRRH-----PRAITR----AGQVKGNGTR----HEKDDRRRIRSRYVLgfDNR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 385 KKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQteySTQLTQRLWEAEDMvqkvhahssemeAQLSQALEELG 464
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREA---LQRLAEYSWDEIDV------------ASAEREIAELE 674
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907160835 465 VQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQME 527
Cdd:COG4913 675 AELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
65-525 |
1.84e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 65 IQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEK---MREQLERHRLCKQNLDAV 141
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVatsIREISCQQHTLTQHIHTL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 142 SQQ---LREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQrkwQEANQKIQELQASQDER 218
Cdd:TIGR00618 385 QQQkttLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCA---AAITCTAQCEKLEKIHL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 219 AEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENT-HLREMKETNGLLTEELEGLQRKLSRQEKMQ 297
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCiHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 298 EALVDLELEKEKLLAKLQSWENLDQtmglnlrtpedlsrfvvELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVrqaN 377
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQ-----------------EIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT---E 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 378 AQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLTQ-RLWEAEDMVQKVHAHSSEMEAQL 456
Cdd:TIGR00618 602 KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQeRVREHALSIRVLPKELLASRQLA 681
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 457 SQALEELGVQ-KQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQ 525
Cdd:TIGR00618 682 LQKMQSEKEQlTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ 751
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
155-300 |
1.93e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.82 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 155 AREMISSLKGRVSELqlsamdqkvqVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIK-DLEQKLc 233
Cdd:PRK00409 507 AKKLIGEDKEKLNEL----------IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLeEAEKEA- 575
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907160835 234 lqeqdAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEAL 300
Cdd:PRK00409 576 -----QQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
50-530 |
2.18e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKsyLIQVEREKMQMELSHKRARVELERAASTNARNYEREvDRNQELLARIRQLQECEATAEEkMREQLE 129
Cdd:PRK03918 218 ELREELEKLEKE--VKELEELKEEIEELEKELESLEGSKRKLEEKIRELE-ERIEELKKEIEELEEKVKELKE-LKEKAE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 130 RHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQlsamDQKVQVKRLESEKQELK---EQLELQQRKWQEANQ 206
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEkrlEELEERHELYEEAKA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 207 KIQELQASQDERAEHEqkIKDLEQKLCLQEQDAAVVKSMKSELMRM-PRMERELKRLHEENTHLREMKET----NGLLTE 281
Cdd:PRK03918 370 KKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARiGELKKEIKELKKAIEELKKAKGKcpvcGRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 282 ELEG---------LQRKLSRQEKMQEALVDLELEK---EKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQREL--- 346
Cdd:PRK03918 448 EHRKelleeytaeLKRIEKELKEIEEKERKLRKELrelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAeey 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 347 -TLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSY------- 418
Cdd:PRK03918 528 eKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFyneylel 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 419 ---DSELTQTEYSTQLTQR-LWEAEDMVQKVHAHSSEMEAQLSQAL-----EELGVQKQRADTLEMELKMLKAQTSSAES 489
Cdd:PRK03918 608 kdaEKELEREEKELKKLEEeLDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEK 687
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1907160835 490 SfsfcKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 530
Cdd:PRK03918 688 R----REEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
138-248 |
2.27e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 138 LDAVSQQLREQEDSLASAREMISSLKgrvselQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDE 217
Cdd:COG0542 406 IDSKPEELDELERRLEQLEIEKEALK------KEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE 479
|
90 100 110
....*....|....*....|....*....|.
gi 1907160835 218 RAEHEQKIKDLEQKLCLQEQDAAVVKSMKSE 248
Cdd:COG0542 480 LEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-396 |
3.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 3.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKS-YLIQVEREKMQMELSHKRARvELERAASTNARNYE-REVDRNQELLARIRQLQECEATAEEKMR-E 126
Cdd:PTZ00121 1395 EAKKKAEEDKKKAdELKKAAAAKKKADEAKKKAE-EKKKADEAKKKAEEaKKADEAKKKAEEAKKAEEAKKKAEEAKKaD 1473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 127 QLERHRLCKQNLDAVSQQLREQEDSLASAREMiSSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQ 206
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKA-AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 207 KIQEL-------QASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGlL 279
Cdd:PTZ00121 1553 KAEELkkaeekkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE-E 1631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 280 TEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQREltlkeknnsiTSSA 359
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE----------AEEA 1701
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907160835 360 RGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARR 396
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
53-391 |
3.93e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 53 ERAEQIRSKSYLIQVEREKMQMELshkRARVELERAAST-NARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERH 131
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADEL---KKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 132 RLCKqnldavSQQLREQEDSLASAREM--ISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQ 209
Cdd:PTZ00121 1605 KKMK------AEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 210 ELQASQDERAEHEQKIKDleqklclQEQDAAVVKSMKSELMRMPRMERELKRLHEENT----HLREMKETNGLLTEEL-- 283
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKK-------EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKikaeEAKKEAEEDKKKAEEAkk 1751
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 284 -EGLQRKLSRQEKMQEALV-DLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVelqqreltLKEKNNSITSSARG 361
Cdd:PTZ00121 1752 dEEEKKKIAHLKKEEEKKAeEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN--------IIEGGKEGNLVIND 1823
|
330 340 350
....*....|....*....|....*....|
gi 1907160835 362 LEKVQQQLQDEVRQANAQLLEERKKRETHE 391
Cdd:PTZ00121 1824 SKEMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-220 |
3.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQL 128
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 129 ERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLsamDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI 208
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKA---ERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
170
....*....|..
gi 1907160835 209 QELQASQDERAE 220
Cdd:COG4942 230 ARLEAEAAAAAE 241
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
166-481 |
4.17e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 166 VSELQLSAMDQKVQVKRLESEKQELKEQLElQQRKWQEANQKIQ-ELQASQDERAEHEQKIKDLEQKLCLQEQDAavvKS 244
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKAREVE-RRRKLEEAEKARQaEMDRQAAIYAEQERMAMERERELERIRQEE---RK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 245 MKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKlQSWENLDQTM 324
Cdd:pfam17380 360 RELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE-QEEARQREVR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 325 GLNLRTPEDLSRFVVELQQREltlkeknnsitssaRGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQK----- 399
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQ--------------QQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKeleer 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 400 RNALLTKERDgmRAILgSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEElgvqKQRADTLEMELKM 479
Cdd:pfam17380 505 KQAMIEEERK--RKLL-EKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEE----RSRLEAMEREREM 577
|
..
gi 1907160835 480 LK 481
Cdd:pfam17380 578 MR 579
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
159-529 |
4.69e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 159 ISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAEHEQKIKDLEQklclqEQD 238
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE---KQLNQLKSEISDLNN-----QKE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 239 AAVVKSMKSELMRMPRMERELK-RLHEENTHLREMKETNGLLTEELEGLQ-RKLSRQEKMQEALVDLELEKEKLLAKLQS 316
Cdd:TIGR04523 306 QDWNKELKSELKNQEKKLEEIQnQISQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEIEKLKKENQSYKQE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 317 WENLdqtmglnlrtpedlsrfvvELQQRELTLKEKNNsitssarglEKVQQQLQDEVRqanaqlleerKKRETHEALARR 396
Cdd:TIGR04523 386 IKNL-------------------ESQINDLESKIQNQ---------EKLNQQKDEQIK----------KLQQEKELLEKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 397 LQKRNALLTKERDGMrailgsydSELTQTEYSTQLTqrLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEME 476
Cdd:TIGR04523 428 IERLKETIIKNNSEI--------KDLTNQDSVKELI--IKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907160835 477 LKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKL 529
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKD 550
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
147-415 |
4.96e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 147 EQEDSLASAREMISSLKgRVSELQLSAMDQKVQVKRLEsekqELKEQLELQQRKWQEANQKIQELQASQDERAEheQKIK 226
Cdd:COG4913 219 EEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE----PIRELAERYAAARERLAELEYLRAALRLWFAQ--RRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 227 DLEQKLCLQEQDAAVVKSMKSELmrmprmERELKRLHEENTHLREMKETNGllTEELEGLQRKLSRqekmqealvdLELE 306
Cdd:COG4913 292 LLEAELEELRAELARLEAELERL------EARLDALREELDELEAQIRGNG--GDRLEQLEREIER----------LERE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 307 KEKLLAKLQSWENLDQTMGLNLrtPEDLSRFVvELQQReltlkeknnsITSSARGLEKVQQQLQDEVRQANAQLLEERKK 386
Cdd:COG4913 354 LEERERRRARLEALLAALGLPL--PASAEEFA-ALRAE----------AAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
250 260
....*....|....*....|....*....
gi 1907160835 387 RETHEALARRLQKRNALLTKERDGMRAIL 415
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
50-403 |
4.99e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNY-------EREVDRNQELLARIRQLQECEATAE 121
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIeELEEEIEELRERFgdapvdlGNAEDFLEELREERDELREREAELE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 122 EKMREQLERHRLCKQNLDA-----VSQQLREQE--DSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKqELKEQL 194
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAgkcpeCGQPVEGSPhvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRI 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 195 ELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLclqEQDAAVVKSMKSELMRmpRMERELKRLHEENTHLREmke 274
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAEL---EAEAEEKREAAAEAEE--EAEEAREEVAELNSKLAE--- 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 275 tnglLTEELEGLQRKLSRQEKMQEALVDLELEKEKL--LAKLQSwENLDQTMGLNLRTPEDLSRF----VVELQQRELTL 348
Cdd:PRK02224 584 ----LKERIESLERIRTLLAAIADAEDEIERLREKReaLAELND-ERRERLAEKRERKRELEAEFdearIEEAREDKERA 658
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1907160835 349 KEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNAL 403
Cdd:PRK02224 659 EEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAL 713
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
387-591 |
7.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 387 RETHEALARRLQKRNALltkerDGMRAILGSYDSELTQTEYSTQL--TQRLWEAEDMVQKVHAHSSEMEAQLSQALEELG 464
Cdd:COG4913 238 ERAHEALEDAREQIELL-----EPIRELAERYAAARERLAELEYLraALRLWFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 465 VQKQRADTLEMELKMLKAQTSSAESsfsfckEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDY-------NQ 537
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGG------DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAsaeefaaLR 386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907160835 538 SRTKVLHMSLNPISMA-RQRQHEDHDRLQEECERLRGLVHALE----RGGPIPADLEAA 591
Cdd:COG4913 387 AEAAALLEALEEELEAlEEALAEAEAALRDLRRELRELEAEIAslerRKSNIPARLLAL 445
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
269-530 |
7.84e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 7.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 269 LREMKETNGLLTEELEGLQRKLSRQEK-MQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELT 347
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENrLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 348 LKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERkkrethealARRLQKRNALLTKERDGMRAILGSYDSELTQTEY 427
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR---------IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 428 STQLtqrlweAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEE 507
Cdd:TIGR02169 827 EKEY------LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
250 260
....*....|....*....|...
gi 1907160835 508 LEGERSRLEQEKQVLEMQMEKLT 530
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELK 923
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
356-598 |
9.76e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 356 TSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYS-TQLTQR 434
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 435 LWEAEDMVQKVHAHSSEMEaqlSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSR 514
Cdd:COG4942 99 LEAQKEELAELLRALYRLG---RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 515 LEQEKQVLEMQMEKLTLQgdyNQSRTKVlhmsLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSL 594
Cdd:COG4942 176 LEALLAELEEERAALEAL---KAERQKL----LARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....
gi 1907160835 595 PSSK 598
Cdd:COG4942 249 AALK 252
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
69-579 |
9.80e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 9.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 69 REKMQMELSHKRARVELERAASTNAR--NYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLR 146
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERlnGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 147 EQEDSLASAREMISSLKGRVSelqlsamDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELqasQDERAEHEQKIK 226
Cdd:PRK02224 262 DLRETIAETEREREELAEEVR-------DLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 227 DLEQKLCLQEQDAAvvksmkselmrmpRMERELKRLHEENTHLREMKETnglLTEELEGLQRKLsrqEKMQEALVDLELE 306
Cdd:PRK02224 332 ECRVAAQAHNEEAE-------------SLREDADDLEERAEELREEAAE---LESELEEAREAV---EDRREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 307 KEKLLAKLQ-SWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLE--KVQQQLQDEVRQANAQLLEE 383
Cdd:PRK02224 393 IEELRERFGdAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagKCPECGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 384 -RKKRETHEAlarrlqkrnalltkERDGMRAILGSYDSELTQTEystqltqRLWEAEDMVQKVHAHSSEMEAQLSQALEE 462
Cdd:PRK02224 473 dRERVEELEA--------------ELEDLEEEVEEVEERLERAE-------DLVEAEDRIERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 463 LGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKV 542
Cdd:PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERL 611
|
490 500 510
....*....|....*....|....*....|....*..
gi 1907160835 543 LHMSLNPISMARQRQhedhDRLQEECERLRGLVHALE 579
Cdd:PRK02224 612 REKREALAELNDERR----ERLAEKRERKRELEAEFD 644
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
102-333 |
1.23e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 102 RNQELLARIRQLQECEATAEeKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSElqlsamdqkvqvk 181
Cdd:PRK01156 150 QRKKILDEILEINSLERNYD-KLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSI------------- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 182 rLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKR 261
Cdd:PRK01156 216 -TLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNR 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907160835 262 lhEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMgLNLRTPED 333
Cdd:PRK01156 295 --NYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQI-LELEGYEM 363
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
104-567 |
1.32e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 104 QELLARIRQLQ---ECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQV 180
Cdd:pfam01576 5 EEMQAKEEELQkvkERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 181 KRLESEKQELKEQLELQQRKWQEANQKIQELQAS----QDERAEHEQKIKDLEQK-LCLQEQDAAVVKSMKSELMRMPRM 255
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAArqklQLEKVTTEAKIKKLEEDiLLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 256 ERELKRLHEENTHLREMKETNGLLTEELEGlqrKLSRQEKMQealvdLELEKEKLLAKLQSWENLDQTMGLNLRTPEdls 335
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEE---RLKKEEKGR-----QELEKAKRKLEGESTDLQEQIAELQAQIAE--- 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 336 rFVVELQQRELTLKEKNNSITSSArgleKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAIL 415
Cdd:pfam01576 234 -LRAQLAKKEEELQAALARLEEET----AQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 416 -GSYDSELTQTEYSTQLTQRLWE----AEDMVQKVHAHSSEMEAQLSQALEELGVQKQRA----------------DTLE 474
Cdd:pfam01576 309 eDTLDTTAAQQELRSKREQEVTElkkaLEEETRSHEAQLQEMRQKHTQALEELTEQLEQAkrnkanlekakqalesENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 475 MELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMAR 554
Cdd:pfam01576 389 LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468
|
490
....*....|...
gi 1907160835 555 QRQhEDHDRLQEE 567
Cdd:pfam01576 469 QLQ-DTQELLQEE 480
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
49-271 |
1.38e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 49 MQLEERA---EQIRSKSYLIQVER----EKMQMELSHK--RARVELERAASTNARNYEREVDRNQEL--LARIRQLQEcE 117
Cdd:pfam17380 353 IRQEERKrelERIRQEEIAMEISRmrelERLQMERQQKneRVRQELEAARKVKILEEERQRKIQQQKveMEQIRAEQE-E 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 118 ATAEEKMREQLERHRlckqNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQK----VQVKRLESEKQELKEQ 193
Cdd:pfam17380 432 ARQREVRRLEEERAR----EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKraeeQRRKILEKELEERKQA 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 194 LELQQRKWQEANQKIQELQ---ASQDERAEHEQ---KIKDLEQKLCLQEQdAAVVKSMKSELMRMPRmERELKRLHEENT 267
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQkaiYEEERRREAEEerrKQQEMEERRRIQEQ-MRKATEERSRLEAMER-EREMMRQIVESE 585
|
....
gi 1907160835 268 HLRE 271
Cdd:pfam17380 586 KARA 589
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
70-427 |
1.52e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 70 EKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRlckqNLDAVSQQLREQE 149
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERER----ELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 150 DSLASAREMISSLKgRVSELQLSAMDQKVQVKRLESE---KQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIK 226
Cdd:pfam17380 362 LERIRQEEIAMEIS-RMRELERLQMERQQKNERVRQEleaARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 227 DleqklclQEQDAAVVKSMKSELMRMPRMERelkrlheenthLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELE 306
Cdd:pfam17380 441 E-------EERAREMERVRLEEQERQQQVER-----------LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 307 --KEKLLAKLQSWENLDQTMglnlrtpEDLSRFVVELQQRELTLKEKNNSITSSARglekvqQQLQDEVRQANaqllEER 384
Cdd:pfam17380 503 erKQAMIEEERKRKLLEKEM-------EERQKAIYEEERRREAEEERRKQQEMEER------RRIQEQMRKAT----EER 565
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1907160835 385 KKRETHEalarrlqkrnalltKERDGMRAILgsyDSELTQTEY 427
Cdd:pfam17380 566 SRLEAME--------------REREMMRQIV---ESEKARAEY 591
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
50-557 |
1.60e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDrnqellARIRQLQECEATAEEKMREQLE 129
Cdd:pfam01576 79 ELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTE------AKIKKLEEDILLLEDQNSKLSK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 130 RHRLCKQNLDAVSQQLREQEDSLASARE-------MISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQ 202
Cdd:pfam01576 153 ERKLLEERISEFTSNLAEEEEKAKSLSKlknkheaMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 203 EAN----QKIQELQASQDeRAEHEQKIKDLEQKLC--LQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLRE----- 271
Cdd:pfam01576 233 ELRaqlaKKEEELQAALA-RLEEETAQKNNALKKIreLEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTeledt 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 272 ------MKETNGLLTEELEGLQRKLSRQEKMQEALVdLELEKEKLLAKLQSWENLDQTmglnlrtpedlSRFVVELQQRE 345
Cdd:pfam01576 312 ldttaaQQELRSKREQEVTELKKALEEETRSHEAQL-QEMRQKHTQALEELTEQLEQA-----------KRNKANLEKAK 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 346 LTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQ- 424
Cdd:pfam01576 380 QALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKl 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 425 TEYSTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLK 504
Cdd:pfam01576 460 SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT 539
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1907160835 505 VEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQ 557
Cdd:pfam01576 540 LEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ 592
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
36-379 |
1.96e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 36 SASGSLQKQYEYHMQLEERAEqIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNYEREVDRNQELLARIRQlq 114
Cdd:PRK04863 270 VAADYMRHANERRVHLEEALE-LRRELYTSRRQLAAEQYRLVEMARELaELNEAESDLEQDYQAASDHLNLVQTALRQ-- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 115 eceataeekmREQLERhrlCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSamdqkvqVKRLESEKQELKEQL 194
Cdd:PRK04863 347 ----------QEKIER---YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE-------VDELKSQLADYQQAL 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 195 ELQQRK---WQEANQKIQE------------------LQASQDERAEHEQKIKDLEQKLCLQ-------EQDAAVVKSMK 246
Cdd:PRK04863 407 DVQQTRaiqYQQAVQALERakqlcglpdltadnaedwLEEFQAKEQEATEELLSLEQKLSVAqaahsqfEQAYQLVRKIA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 247 SELMRMP--RMERELKRLHEENTHLremketngllTEELEGLQRKLSRQEKmqealvDLELEK--EKLLAKLQswenldQ 322
Cdd:PRK04863 487 GEVSRSEawDVARELLRRLREQRHL----------AEQLQQLRMRLSELEQ------RLRQQQraERLLAEFC------K 544
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907160835 323 TMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQ 379
Cdd:PRK04863 545 RLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
37-295 |
2.19e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 37 ASGSLQKQYEYHMQLEERAEQIRSK-SYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIrqlqE 115
Cdd:PRK04863 849 LERALADHESQEQQQRSQLEQAKEGlSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQL----E 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 116 CEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQ-----KVQVKRLESEKQEL 190
Cdd:PRK04863 925 PIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDlneklRQRLEQAEQERTRA 1004
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 191 KEQLELQQRKWQEANQKIQELQAS----QDERAEHEQKIKDLEQKLCLQEQDAAvvKSMKSELMrmprmerelKRLHEEN 266
Cdd:PRK04863 1005 REQLRQAQAQLAQYNQVLASLKSSydakRQMLQELKQELQDLGVPADSGAEERA--RARRDELH---------ARLSANR 1073
|
250 260
....*....|....*....|....*....
gi 1907160835 267 THLREMKETNGLLTEELEGLQRKLSRQEK 295
Cdd:PRK04863 1074 SRRNQLEKQLTFCEAEMDNLTKKLRKLER 1102
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
187-502 |
2.67e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 187 KQELKEQLE-LQQRKWQEANQK--IQELQASQ---DERAEHEQKIKDLEQKLclqeQDAAvvKSMKSelmrmprMERELK 260
Cdd:PRK11281 38 EADVQAQLDaLNKQKLLEAEDKlvQQDLEQTLallDKIDRQKEETEQLKQQL----AQAP--AKLRQ-------AQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 261 RLHEENThlREMKETngLLTEELEGLQRKL-SRQEKMQEALVDLeLEKEKLLAKLQSwenldqtmgLNLRTPEDLSRFVV 339
Cdd:PRK11281 105 ALKDDND--EETRET--LSTLSLRQLESRLaQTLDQLQNAQNDL-AEYNSQLVSLQT---------QPERAQAALYANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 340 ELQQRELTLKEKN---NSITSSARGLEKVQQQL---QDEVRQ----ANAQLLE-ERKKRETHEALARRLQKRNALLTKER 408
Cdd:PRK11281 171 RLQQIRNLLKGGKvggKALRPSQRVLLQAEQALlnaQNDLQRksleGNTQLQDlLQKQRDYLTARIQRLEHQLQLLQEAI 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 409 DGMRAILgsydSELTQTEY-STQLTQRLwEAEDMVQKvhahSSEMEAQLSQALEElgvQKQRADTLEMELKMLKAQTSSA 487
Cdd:PRK11281 251 NSKRLTL----SEKTVQEAqSQDEAARI-QANPLVAQ----ELEINLQLSQRLLK---ATEKLNTLTQQNLRVKNWLDRL 318
|
330
....*....|....*
gi 1907160835 488 ESSFSFCKEEVDALR 502
Cdd:PRK11281 319 TQSERNIKEQISVLK 333
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
49-232 |
2.86e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 49 MQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEAtaeekmreql 128
Cdd:COG3206 208 VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA---------- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 129 erhrlckqNLDAVSQQLREQEDSLASAREMISSLKGRV-SELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQK 207
Cdd:COG3206 278 --------ELAELSARYTPNHPDVIALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180
....*....|....*....|....*
gi 1907160835 208 IQELQASQDERAEHEQKIKDLEQKL 232
Cdd:COG3206 350 EAELRRLEREVEVARELYESLLQRL 374
|
|
| COG5391 |
COG5391 |
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ... |
6-262 |
2.89e-03 |
|
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];
Pssm-ID: 227680 [Multi-domain] Cd Length: 524 Bit Score: 40.94 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 6 ENTTVLSSLRSLNNFISQRMEGTSglDVSTSASGSLQKQ----YEYHMQLEERAEQIRSKSYliqvEREKMQMELSHKRA 81
Cdd:COG5391 245 NSKSWESHSTLLSSFIENRKSVPT--PLSLDLTSTTQELdmerKELNESTSKAIHNILSIFS----LFEKILIQLESEEE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 82 RVE--------LERAASTNARNYEREVDRNQELLA----------------RIRQLQECEATAEEKM--REQLE-RHRLC 134
Cdd:COG5391 319 SLTrlleslnnLLLLVLNFSGVFAKRLEQNQNSILnegvvqaetlrsslkeLLTQLQDEIKSRESLIltDSNLEkLTDQN 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 135 KQNLDAVSQQLR---EQEDSLASA--REMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQ 209
Cdd:COG5391 399 LEDVEELSRSLRknsSQRAVVSQQpeGLTSFSKLSYKLRDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELK 478
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1907160835 210 ELQasqderaEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRL 262
Cdd:COG5391 479 NEL-------KFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQLDRL 524
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
211-438 |
3.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 211 LQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmprmERELKRLHEENTHL-REMKETNGLLTEELEGLQRK 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL------LKQLAALERRIAALaRRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 290 LSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNlrTPEDLSRFVVELQqrelTLKEKNNSITSSARGLEKVQQQL 369
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLL--SPEDFLDAVRRLQ----YLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907160835 370 QDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEA 438
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
143-428 |
3.59e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 143 QQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQ-VKRLESEKQELKEQLElqqrkwqEANQKIQELQASQDERAEH 221
Cdd:COG5185 239 QDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAEsSKRLNENANNLIKQFE-------NTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 222 EQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKEtngllteELEGLQRKLSRQEKMQEALV 301
Cdd:COG5185 312 ESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIE-------NIVGEVELSKSSEELDSFKD 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 302 DLELEKEKLLAKLQSWEN--------LDQTMGLNLRTPEDLSRfvvELQQRELTLKEKNNSITSSARGLEKVQQQLQDEV 373
Cdd:COG5185 385 TIESTKESLDEIPQNQRGyaqeilatLEDTLKAADRQIEELQR---QIEQATSSNEEVSKLLNELISELNKVMREADEES 461
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907160835 374 --RQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYS 428
Cdd:COG5185 462 qsRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSK 518
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
97-293 |
5.07e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 97 EREVDRNqELLAR-IRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMD 175
Cdd:COG2433 360 PPDVDRD-EVKARvIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 176 QKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKlcLQEQDAAVVKSMKSELMRMPRM 255
Cdd:COG2433 439 KDERIERLERELSEARSEERREIRKDREISRLDREIERLERELEEERERIEELKRK--LERLKELWKLEHSGELVPVKVV 516
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1907160835 256 ER----ELKRLHEEnthlREMKETNGLLTEELEGLQRKLSRQ 293
Cdd:COG2433 517 EKftkeAIRRLEEE----YGLKEGDVVYLRDASGAGRSTAEL 554
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
126-464 |
7.66e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 126 EQLERhrlCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSamdqkvqVKRLESEKQELKEQLELQQRK---WQ 202
Cdd:COG3096 347 EKIER---YQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEE-------VDSLKSQLADYQQALDVQQTRaiqYQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 203 EANQKIQE------------------LQASQDERAEHEQKIKDLEQKLCLQ-------EQDAAVVKSMKSELMRMPRME- 256
Cdd:COG3096 417 QAVQALEKaralcglpdltpenaedyLAAFRAKEQQATEEVLELEQKLSVAdaarrqfEKAYELVCKIAGEVERSQAWQt 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 257 -RELKRLHEENTHLREMKETnglLTEELEGLQRKLSRQEKMQEALvdlelekekllaklqswENLDQTMGLNLRTPEDLS 335
Cdd:COG3096 497 aRELLRRYRSQQALAQRLQQ---LRAQLAELEQRLRQQQNAERLL-----------------EEFCQRIGQQLDAAEELE 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 336 RFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQlleERKKRETHEALARRLQKRNALLTKERDGMRAIL 415
Cdd:COG3096 557 ELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR---APAWLAAQDALERLREQSGEALADSQEVTAAMQ 633
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1907160835 416 GSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELG 464
Cdd:COG3096 634 QLLEREREATVERDELAARKQALESQIERLSQPGGAEDPRLLALAERLG 682
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-240 |
8.44e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.98 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARVeleRAASTNARNYEREVDRNQellARIRQLQECEATAEEKMREQL- 128
Cdd:COG4942 38 ELEKELAALKKEEKALLKQLAALERRIAALARRI---RALEQELAALEAELAELE---KEIAELRAELEAQKEELAELLr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 129 ERHRLCKQN--------------------LDAVSQQLREQEDSLASAREMISSLKgrvSELQLSAMDQKVQVKRLESEKQ 188
Cdd:COG4942 112 ALYRLGRQPplalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALR---AELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907160835 189 ELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAA 240
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
156-572 |
8.69e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 39.72 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 156 REMISSLKGRVSELQLSaMDQKVQVKRLESEKQE-LKEQLE-----------LQQRKWQEANQKIQELQASQDERAEHEQ 223
Cdd:pfam15921 109 RQSVIDLQTKLQEMQME-RDAMADIRRRESQSQEdLRNQLQntvheleaakcLKEDMLEDSNTQIEQLRKMMLSHEGVLQ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 224 KIK----DLEQKLC--LQEQDAAVVKSMKSELMRMPRMERELkrlheeNTHLREMKETNGLLTEELEGL----QRKL--- 290
Cdd:pfam15921 188 EIRsilvDFEEASGkkIYEHDSMSTMHFRSLGSAISKILREL------DTEISYLKGRIFPVEDQLEALksesQNKIell 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 291 --SRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSR-----FVVELQQRELTLKEKNNSITSSARGLE 363
Cdd:pfam15921 262 lqQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARnqnsmYMRQLSDLESTVSQLRSELREAKRMYE 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 364 KVQQQLQDEVRQANAQLLEERKKRETH-----------EALARRLQKRNALLTKERDGMRAILG-SYDSELTQTEYSTQL 431
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFsqesgnlddqlQKLLADLHKREKELSLEKEQNKRLWDrDTGNSITIDHLRREL 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 432 TQRLWEAEDMVQKVHAHSSEMEAQLSQaleELGVQKQRADTLEmELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGE 511
Cdd:pfam15921 422 DDRNMEVQRLEALLKAMKSECQGQMER---QMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907160835 512 RSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPIsmarqRQHEDHDR-LQEECERLR 572
Cdd:pfam15921 498 VSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-----KNEGDHLRnVQTECEALK 554
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
164-530 |
8.77e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 164 GRVSELQLSAMDQKVQVKRLESEKQELKEQLELQqrkwqeanqkIQElqasQDERAEHEqkikdleqklclqeqdaavvk 243
Cdd:PRK02224 162 GKLEEYRERASDARLGVERVLSDQRGSLDQLKAQ----------IEE----KEEKDLHE--------------------- 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 244 smkselmRMPRMERELKRLHEENTHLREMKETnglLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWEnldqt 323
Cdd:PRK02224 207 -------RLNGLESELAELDEEIERYEEQREQ---ARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE----- 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 324 mglnlRTPEDLSRFVVELQQRELTLKEKNNSITS-------SARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARR 396
Cdd:PRK02224 272 -----REREELAEEVRDLRERLEELEEERDDLLAeaglddaDAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAES 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907160835 397 LQKRNALLTKERDGMRAILGSYDSELTQTEYS--------TQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQ 468
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAvedrreeiEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRE 426
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907160835 469 RADTLEMELKMLKAQTSSAESSFSFCK--------------EEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 530
Cdd:PRK02224 427 REAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVEEVEERLERAE 502
|
|
| |
