|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-845 |
2.30e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 358 SEKTTKQLWLESSEAINREDILQLKNEVQvlqKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQ 437
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEA---KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 438 HHEAMKAQIRESLLAKHAVE-KQHLLEVYEGTQSQLRSDLDKMNKEMAAVQEcylevcREKDGLESTLRKTME--KAQEQ 514
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAaKKKAEEKKKADEAKKKAEEDKKKADELKKAA------AAKKKADEAKKKAEEkkKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 515 KRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDR 594
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 595 GSQTEQVAcPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEvelELKYCEiiAQKVETAVQNARSRWIQELPMLA 674
Cdd:PTZ00121 1517 KAEEAKKA-DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE---EKKKAE--EAKKAEEDKNMALRKAEEAKKAE 1590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 675 EYKALLRAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKvhslQKELELKDEEVPVIVRAEVA 754
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK----KKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 755 KARTEWNKEKQEEIHKiqeqNEEDYRQFLEDHRNKINEvlaaakedfvKQKAELLLQKETEFQACLDQSRKEWTLQEAQQ 834
Cdd:PTZ00121 1667 AKKAEEDKKKAEEAKK----AEEDEKKAAEALKKEAEE----------AKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
490
....*....|.
gi 1907144135 835 TQVEiRQYEED 845
Cdd:PTZ00121 1733 EEAK-KEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
366-867 |
9.12e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 9.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 366 WLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFdHDKQEAVARCERTyQQHHEAMKAQ 445
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQD-IARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 446 IRESL---------LAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKR 516
Cdd:COG1196 314 LEERLeeleeelaeLEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 517 QLLEAREEYVRKLK-----LELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEwQSKLDDSLAAWRKTT 591
Cdd:COG1196 394 AAAELAAQLEELEEaeealLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 592 SDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELP 671
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 672 MLAEYKAllrAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSV------KELEEKVHSLQKELELKDEEV 745
Cdd:COG1196 553 VEDDEVA---AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlvasdlREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 746 PVIVRAEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFLEDHRNKINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRK 825
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1907144135 826 EWTLQEAQQTQVEIRQYEEDTLTVLAYLLKDTQLEYGGDSQD 867
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-582 |
2.46e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 6 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 85
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 86 TKKLRTTEITLESLKQQLVELHHS-----ESLQRAREHHESIVASLTQKHEEQVSSLQKNLDAT----------ITALQE 150
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEElaeleEKLEELKEELESLEAELEELEAELEELESRLEELEeqletlrskvAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 151 QESI---CTRLKDHVQQLERNQEAVRLEKTELINRLTRS-LEDSQKQCAHL--LQSGSVQEVAQLQLQLQQAQKAHVLSE 224
Cdd:TIGR02168 395 IASLnneIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELeeELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 225 SMNKALQEELTELKDEI-----------SLYESAAEL--------GVLPG-------DSEGDLSIE--LTESCVDLGIKK 276
Cdd:TIGR02168 475 QALDAAERELAQLQARLdslerlqenleGFSEGVKALlknqsglsGILGVlselisvDEGYEAAIEaaLGGRLQAVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 277 VNW--------KQSKANRVT----QQESPDEDPSKDELILKLKTQVQRLLtSNSVKR---------------HLVSQLQS 329
Cdd:TIGR02168 555 LNAakkaiaflKQNELGRVTflplDSIKGTEIQGNDREILKNIEGFLGVA-KDLVKFdpklrkalsyllggvLVVDDLDN 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 330 DLRECRETMEAFQQ-SKDGD--------SGMETKTDTSEKTTKQLWLESSEAINR--EDILQLKNEVQVLQKQNQELKEA 398
Cdd:TIGR02168 634 ALELAKKLRPGYRIvTLDGDlvrpggviTGGSAKTNSSILERRREIEELEEKIEEleEKIAELEKALAELRKELEELEEE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 399 EEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQHHE-AMKAQIRESLLAKHAVEKQHLLEVYEGTQ-------- 469
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElTELEAEIEELEERLEEAEEELAEAEAEIEeleaqieq 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 470 -----SQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTL---RKTMEKAQEQKRQLLEAREEYvrKLKLELEEKYQETL 541
Cdd:TIGR02168 794 lkeelKALREALDELRAELTLLNEEAANLRERLESLERRIaatERRLEDLEEQIEELSEDIESL--AAEIEELEELIEEL 871
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1907144135 542 KTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDD 582
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-582 |
4.08e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 6 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 85
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 86 TKKLRTTEITLESLKQQLVELhhSESLQRAREHHESIVASLTQKhEEQVSSLQKNLDATITALQEQESictRLKDHVQQL 165
Cdd:COG1196 301 EQDIARLEERRRELEERLEEL--EEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAEAEE---ALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 166 ERNQEAVRLEKTELINRLTRSLEDSQKQcAHLLQSGSVQEVAQLQLQLQQAQKAHVLSESMNKALQEELTELKDEISLYE 245
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 246 SAAEL-GVLPGDSEGDLSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEDPSKDELILKLKTQvqrlltsnsvkRHLV 324
Cdd:COG1196 454 LEEEEeALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG-----------LRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 325 SQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRS 404
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 405 TNQDLcnqmRQMVQEFDHDKQEAVArcERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMA 484
Cdd:COG1196 603 LVASD----LREADARYYVLGDTLL--GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 485 AVQECyLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKES 564
Cdd:COG1196 677 AEAEL-EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
570
....*....|....*...
gi 1907144135 565 RQKLIQqlEKEWQSKLDD 582
Cdd:COG1196 756 LPEPPD--LEELERELER 771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
78-838 |
3.92e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 3.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 78 FRVSEEKLTKKLRTTEITLE-------SLKQQLVELH-HSESLQRARE--------HHESIVASLTQKHEE------QVS 135
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDrledilnELERQLKSLErQAEKAERYKElkaelrelELALLVLRLEELREEleelqeELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 136 SLQKNLDATITALQEQESICTRLKDHVQQLERNQEAVR---LEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLq 212
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 213 lqqaqkahvlsESMNKALQEELTELKDEISlyesaaelgvlpgdsegdlsiELTESCVDLGIKKVNWKQSKANRVTQQEs 292
Cdd:TIGR02168 329 -----------ESKLDELAEELAELEEKLE---------------------ELKEELESLEAELEELEAELEELESRLE- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 293 pdedpSKDELILKLKTQVQRLltsnsvkRHLVSQLQSDLRECRETMEAFQQSKDGD----SGMETKTDTSEKTTKQLWLE 368
Cdd:TIGR02168 376 -----ELEEQLETLRSKVAQL-------ELQIASLNNEIERLEARLERLEDRRERLqqeiEELLKKLEEAELKELQAELE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 369 SSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDL------CNQMRQMVQEFDhDKQEAVA------------- 429
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqarLDSLERLQENLE-GFSEGVKallknqsglsgil 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 430 -------RCERTYQQhheAMKAQIRESL-----------------LAKHAVEKQHLLEVYEGTQSQLRSDldkmNKEMAA 485
Cdd:TIGR02168 523 gvlseliSVDEGYEA---AIEAALGGRLqavvvenlnaakkaiafLKQNELGRVTFLPLDSIKGTEIQGN----DREILK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 486 VQECYLEVCREKDGLESTLRKTME-------------KAQEQKRQlLEAREEYV-----------------RKLKLELEE 535
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldNALELAKK-LRPGYRIVtldgdlvrpggvitggsAKTNSSILE 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 536 KYQETLKTERQSWLQEQAAGATQQAEKESRQKLiQQLEKEwqskLDDSLAAWRKTTSDRGSQTEQVACPAAVSKAEAAAV 615
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEE----LEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 616 LAEEQARQVQQEKElaTKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALL-----RAQQQEWAKQ 690
Cdd:TIGR02168 750 AQLSKELTELEAEI--EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 691 QELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELELKDEEvpvivRAEVAKARTEWNKEKQEEIHK 770
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE-----RASLEEALALLRSELEELSEE 902
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907144135 771 IQEQNE-----EDYRQFLEDHRNKINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVE 838
Cdd:TIGR02168 903 LRELESkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
5-816 |
5.57e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 5.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 5 NKAKERQLDSLVEKLKDSERQVRYLSHQLLIvQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEK 84
Cdd:pfam02463 208 KALEYYQLKEKLELEEEYLLYLDYLKLNEER-IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 85 LTKKLRTTEITLESLKQQLVELHHSESLQrarehhesivaslTQKHEEQVSSLQKNLDATITALQEQESICTRLKDHVQQ 164
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVDDEEK-------------LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREA 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 165 LERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQA--QKAHVLSESMNKALQEELTELKDEIS 242
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKeaQLLLELARQLEDLLKEEKKEELEILE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 243 LYESAAELGVLPgdsegdlSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEDPSKDELILKLKTQVQRLLTSNsvkrh 322
Cdd:pfam02463 434 EEEESIELKQGK-------LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQK----- 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 323 lvsqlqsdLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKL 402
Cdd:pfam02463 502 --------ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTEL 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 403 RSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKE 482
Cdd:pfam02463 574 PLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 483 maaVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQaagATQQAEK 562
Cdd:pfam02463 654 ---LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE---ELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 563 ESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVACpaavskaeAAAVLAEEQARQVQQEKELATKEALRKPEVE 642
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSE--------LSLKEKELAEEREKTEKLKVEEEKEEKLKAQ 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 643 LELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVM 722
Cdd:pfam02463 800 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEEL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 723 SVKELEEKVHSLQKELELKDEEVPVIVRAEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFLEDHrNKINEVLAAAKEDFV 802
Cdd:pfam02463 880 EEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLE-EADEKEKEENNKEEE 958
|
810
....*....|....
gi 1907144135 803 KQKAELLLQKETEF 816
Cdd:pfam02463 959 EERNKRLLLAKEEL 972
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
9-577 |
3.23e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 9 ERQLDSLVEKLKDSERQVRYLSHQLLIVQDEK------------------DGLALSLRESQQLFQNGKEremQLEAQIAA 70
Cdd:pfam15921 277 EVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsmymrqlsdlestvSQLRSELREAKRMYEDKIE---ELEKQLVL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 71 LEAQVEAFRVSEEKLTKKLRTTEITLESLkqqLVELHHSESLQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQE 150
Cdd:pfam15921 354 ANSELTEARTERDQFSQESGNLDDQLQKL---LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQR 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 151 QESICTRLKDHVQ-QLERNQEAV--RLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQAQKAHVLSESMN 227
Cdd:pfam15921 431 LEALLKAMKSECQgQMERQMAAIqgKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 228 --KALQEELTELKDEISLyeSAAELGVLpgDSEGDLSIELTESCVDLGIKKVnwKQSKANRVTQQESpdedpskdELILK 305
Cdd:pfam15921 511 aiEATNAEITKLRSRVDL--KLQELQHL--KNEGDHLRNVQTECEALKLQMA--EKDKVIEILRQQI--------ENMTQ 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 306 LKTQVQRLLTSNSVKRhlvSQLQSDLRECRETMEAFQQSKDGDsgmETKTDTSEKTTKQLWLESSEAIN----------- 374
Cdd:pfam15921 577 LVGQHGRTAGAMQVEK---AQLEKEINDRRLELQEFKILKDKK---DAKIRELEARVSDLELEKVKLVNagserlravkd 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 375 -REDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTyqqhheamkaqiRESLLAK 453
Cdd:pfam15921 651 iKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT------------RNTLKSM 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 454 HAVEKqHLLEVYEGTQSQL---RSDLDKMNKEMAAVQECYLEVCREKDGL---ESTLRKTMEKAQEQKRQlLEAREEYVR 527
Cdd:pfam15921 719 EGSDG-HAMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLkeeKNKLSQELSTVATEKNK-MAGELEVLR 796
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1907144135 528 KLKLELEEKYQETLKTERQSWLQ-EQAAGATQQAEKES-RQKLIQQLE-KEWQ 577
Cdd:pfam15921 797 SQERRLKEKVANMEVALDKASLQfAECQDIIQRQEQESvRLKLQHTLDvKELQ 849
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1-242 |
3.52e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 1 MKVLNKAKER----QLDSLVEKLKDSERQVRyLSHQLLIVQDEKDGLALSlrESQQLFQNGKEREMQLEAQIAALEAQVE 76
Cdd:PHA02562 168 MDKLNKDKIRelnqQIQTLDMKIDHIQQQIK-TYNKNIEEQRKKNGENIA--RKQNKYDELVEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 77 AFRVSEEKLT---KKLRTTEITLESLKQQLVELHHSEslqraREHHEsiVASLTQKHEEQVSSLQKNLDaTITALQEQes 153
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMY-----EKGGV--CPTCTQQISEGPDRITKIKD-KLKELQHS-- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 154 iCTRLKDHVQQLErnqeavrlEKTELINRLTRSLEDSQKQCAHLLQ--SGSVQEVAQLQLQLQQAQKAHVLSESMNKALQ 231
Cdd:PHA02562 315 -LEKLDTAIDELE--------EIMDEFNEQSKKLLELKNKISTNKQslITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385
|
250
....*....|.
gi 1907144135 232 EELTELKDEIS 242
Cdd:PHA02562 386 DELDKIVKTKS 396
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
380-573 |
4.28e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 41.02 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 380 QLKNEVQVLQKQNQElkEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARcertYQQHHEAMKAQIRES----LLAKHA 455
Cdd:cd16269 98 QLEEKKEEFCKQNEE--ASSKRCQALLQELSAPLEEKISQGSYSVPGGYQL----YLEDREKLVEKYRQVprkgVKAEEV 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 456 VekQHLLEVYEGT-QSQLRSD--LDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLlearEEYVRKLKLE 532
Cdd:cd16269 172 L--QEFLQSKEAEaEAILQADqaLTEKEKEIEAERAKAEAAEQERKLLEEQQRELEQKLEDQERSY----EEHLRQLKEK 245
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907144135 533 LEEKYQETLKTERQ---SWLQEQAAGATQQAEKESR--QKLIQQLE 573
Cdd:cd16269 246 MEEERENLLKEQERaleSKLKEQEALLEEGFKEQAEllQEEIRSLK 291
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-845 |
2.30e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 358 SEKTTKQLWLESSEAINREDILQLKNEVQvlqKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQ 437
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEA---KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 438 HHEAMKAQIRESLLAKHAVE-KQHLLEVYEGTQSQLRSDLDKMNKEMAAVQEcylevcREKDGLESTLRKTME--KAQEQ 514
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAaKKKAEEKKKADEAKKKAEEDKKKADELKKAA------AAKKKADEAKKKAEEkkKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 515 KRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDR 594
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 595 GSQTEQVAcPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEvelELKYCEiiAQKVETAVQNARSRWIQELPMLA 674
Cdd:PTZ00121 1517 KAEEAKKA-DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE---EKKKAE--EAKKAEEDKNMALRKAEEAKKAE 1590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 675 EYKALLRAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKvhslQKELELKDEEVPVIVRAEVA 754
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK----KKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 755 KARTEWNKEKQEEIHKiqeqNEEDYRQFLEDHRNKINEvlaaakedfvKQKAELLLQKETEFQACLDQSRKEWTLQEAQQ 834
Cdd:PTZ00121 1667 AKKAEEDKKKAEEAKK----AEEDEKKAAEALKKEAEE----------AKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
490
....*....|.
gi 1907144135 835 TQVEiRQYEED 845
Cdd:PTZ00121 1733 EEAK-KEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
366-867 |
9.12e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 9.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 366 WLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFdHDKQEAVARCERTyQQHHEAMKAQ 445
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQD-IARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 446 IRESL---------LAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKR 516
Cdd:COG1196 314 LEERLeeleeelaeLEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 517 QLLEAREEYVRKLK-----LELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEwQSKLDDSLAAWRKTT 591
Cdd:COG1196 394 AAAELAAQLEELEEaeealLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 592 SDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELP 671
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 672 MLAEYKAllrAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSV------KELEEKVHSLQKELELKDEEV 745
Cdd:COG1196 553 VEDDEVA---AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlvasdlREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 746 PVIVRAEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFLEDHRNKINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRK 825
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1907144135 826 EWTLQEAQQTQVEIRQYEEDTLTVLAYLLKDTQLEYGGDSQD 867
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-582 |
2.46e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 6 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 85
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 86 TKKLRTTEITLESLKQQLVELHHS-----ESLQRAREHHESIVASLTQKHEEQVSSLQKNLDAT----------ITALQE 150
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEElaeleEKLEELKEELESLEAELEELEAELEELESRLEELEeqletlrskvAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 151 QESI---CTRLKDHVQQLERNQEAVRLEKTELINRLTRS-LEDSQKQCAHL--LQSGSVQEVAQLQLQLQQAQKAHVLSE 224
Cdd:TIGR02168 395 IASLnneIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELeeELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 225 SMNKALQEELTELKDEI-----------SLYESAAEL--------GVLPG-------DSEGDLSIE--LTESCVDLGIKK 276
Cdd:TIGR02168 475 QALDAAERELAQLQARLdslerlqenleGFSEGVKALlknqsglsGILGVlselisvDEGYEAAIEaaLGGRLQAVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 277 VNW--------KQSKANRVT----QQESPDEDPSKDELILKLKTQVQRLLtSNSVKR---------------HLVSQLQS 329
Cdd:TIGR02168 555 LNAakkaiaflKQNELGRVTflplDSIKGTEIQGNDREILKNIEGFLGVA-KDLVKFdpklrkalsyllggvLVVDDLDN 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 330 DLRECRETMEAFQQ-SKDGD--------SGMETKTDTSEKTTKQLWLESSEAINR--EDILQLKNEVQVLQKQNQELKEA 398
Cdd:TIGR02168 634 ALELAKKLRPGYRIvTLDGDlvrpggviTGGSAKTNSSILERRREIEELEEKIEEleEKIAELEKALAELRKELEELEEE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 399 EEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQHHE-AMKAQIRESLLAKHAVEKQHLLEVYEGTQ-------- 469
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElTELEAEIEELEERLEEAEEELAEAEAEIEeleaqieq 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 470 -----SQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTL---RKTMEKAQEQKRQLLEAREEYvrKLKLELEEKYQETL 541
Cdd:TIGR02168 794 lkeelKALREALDELRAELTLLNEEAANLRERLESLERRIaatERRLEDLEEQIEELSEDIESL--AAEIEELEELIEEL 871
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1907144135 542 KTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDD 582
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-582 |
4.08e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 6 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 85
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 86 TKKLRTTEITLESLKQQLVELhhSESLQRAREHHESIVASLTQKhEEQVSSLQKNLDATITALQEQESictRLKDHVQQL 165
Cdd:COG1196 301 EQDIARLEERRRELEERLEEL--EEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAEAEE---ALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 166 ERNQEAVRLEKTELINRLTRSLEDSQKQcAHLLQSGSVQEVAQLQLQLQQAQKAHVLSESMNKALQEELTELKDEISLYE 245
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 246 SAAEL-GVLPGDSEGDLSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEDPSKDELILKLKTQvqrlltsnsvkRHLV 324
Cdd:COG1196 454 LEEEEeALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG-----------LRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 325 SQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRS 404
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 405 TNQDLcnqmRQMVQEFDHDKQEAVArcERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMA 484
Cdd:COG1196 603 LVASD----LREADARYYVLGDTLL--GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 485 AVQECyLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKES 564
Cdd:COG1196 677 AEAEL-EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
570
....*....|....*...
gi 1907144135 565 RQKLIQqlEKEWQSKLDD 582
Cdd:COG1196 756 LPEPPD--LEELERELER 771
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
390-1099 |
9.69e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 9.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 390 KQNQELKEAEEKLRSTNQDLCNQMRqmvqefdhdKQEAVARCERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQ 469
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEVRKAEELR---------KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 470 SQLRSDLDKMNKEMAAVQECYLE--VCREKDGLESTLRKTME-KAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQ 546
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAhfARRQAAIKAEEARKADElKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 547 SWLQEQAAGATQQAEK--ESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQvacpaavskaEAAAVLAEEQARQV 624
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA----------KKKADAAKKKAEEK 1390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 625 QQEKELATKEALRKPEVElELKYCEIIAQKVETAVQNARS-RWIQELPMLAEykallRAQQQEWAKQQelavahrlslal 703
Cdd:PTZ00121 1391 KKADEAKKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAEEkKKADEAKKKAE-----EAKKADEAKKK------------ 1452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 704 seAKEKWKSEleNMKpnvmsvKELEEKVHSlqKELELKDEEVPvivRAEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFL 783
Cdd:PTZ00121 1453 --AEEAKKAE--EAK------KKAEEAKKA--DEAKKKAEEAK---KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 784 EDHRNKINEVLAAAKedfvKQKAELLLQKETEFQAclDQSRKEWTLQEAQQTQV--EIRQYEEDTLTVLAYLLKDTQLEY 861
Cdd:PTZ00121 1518 AEEAKKADEAKKAEE----AKKADEAKKAEEKKKA--DELKKAEELKKAEEKKKaeEAKKAEEDKNMALRKAEEAKKAEE 1591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 862 GGDSQDKQLLEAMSACSSKWISVQYFEKVKAciqkalhdmlslltDSVASEQEKRKVVKSSADTVSWTSSEGDSavpvpl 941
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA--------------EELKKAEEEKKKVEQLKKKEAEEKKKAEE------ 1651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 942 pdstsVRCAQSSAWLKAEAET---EENSRVVEELIEENHDMKNKLEALRalcRTPPRSLSAGAAESAGPSCSRQAlEELR 1018
Cdd:PTZ00121 1652 -----LKKAEEENKIKAAEEAkkaEEDKKKAEEAKKAEEDEKKAAEALK---KEAEEAKKAEELKKKEAEEKKKA-EELK 1722
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 1019 GQyiKAVRKIKRDMLRYIQESKERAAEMVK---------AEVLRERQETARKMRNYYLSCLQQIL--QDNGKEEGAEKKI 1087
Cdd:PTZ00121 1723 KA--EEENKIKAEEAKKEAEEDKKKAEEAKkdeeekkkiAHLKKEEEKKAEEIRKEKEAVIEEELdeEDEKRRMEVDKKI 1800
|
730
....*....|..
gi 1907144135 1088 MSAASKLATMAE 1099
Cdd:PTZ00121 1801 KDIFDNFANIIE 1812
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
324-848 |
5.63e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 5.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 324 VSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEvqvlQKQNQELKEAEEKLR 403
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE----KAEAAEKKKEEAKKK 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 404 StnqdlcnqmrqmvqEFDHDKQEAVARCERTYQQHHEAMKaqiRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEM 483
Cdd:PTZ00121 1380 A--------------DAAKKKAEEKKKADEAKKKAEEDKK---KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 484 AAVQECYLEVCREKDGLESTLRKTME--KAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTerqswlQEQAAGATQQAE 561
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK------AAEAKKKADEAK 1516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 562 KESRQKLIQQLEK-EWQSKLDDSLAAWRKTTSDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPE 640
Cdd:PTZ00121 1517 KAEEAKKADEAKKaEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 641 VELelKYCEIIAQKVETAVQNARSRWIQELPMLAE-----YKALLRAQQQEWAKQQELAVAHRLSlALSEAKEKWKSELE 715
Cdd:PTZ00121 1597 VMK--LYEEEKKMKAEEAKKAEEAKIKAEELKKAEeekkkVEQLKKKEAEEKKKAEELKKAEEEN-KIKAAEEAKKAEED 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 716 NMKPNvmSVKELEEKVHSLQKELELKDEEVPvivRAEVAKARTEWNKEKQEEIHKIQEQNE---EDYRQFLEDHRNKINE 792
Cdd:PTZ00121 1674 KKKAE--EAKKAEEDEKKAAEALKKEAEEAK---KAEELKKKEAEEKKKAEELKKAEEENKikaEEAKKEAEEDKKKAEE 1748
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907144135 793 vlaaAKEDFVKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVEIRQYEEDTLT 848
Cdd:PTZ00121 1749 ----AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
396-708 |
7.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 7.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 396 KEAEEKLRSTNQ------DLCNQMRQMV------------------QEFDHDKQEAVARcERTYQQHHEAMKAQIREslL 451
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLeplerqaekaeryrelkeELKELEAELLLLK-LRELEAELEELEAELEE--L 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 452 AKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKL-K 530
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEeE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 531 LELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVAcpaaVSKA 610
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE----ELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 611 EAAAVLAEEQARQVQQEKELATKEALRKPEVELELKYCEIIAQKVETAVQNARsrwiQELPMLAEYKALLRAQQQEWAKQ 690
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA----LLELLAELLEEAALLEAALAELL 483
|
330
....*....|....*...
gi 1907144135 691 QELAVAHRLSLALSEAKE 708
Cdd:COG1196 484 EELAEAAARLLLLLEAEA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
63-739 |
1.86e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 63 QLEAQIAALEAQVEAfrvseeklTKKLRTteitlesLKQQLVELHHSESLQRAREHHESIvasltQKHEEQVSSLQKNLD 142
Cdd:COG1196 197 ELERQLEPLERQAEK--------AERYRE-------LKEELKELEAELLLLKLRELEAEL-----EELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 143 ATITALQEQESICTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEvaqlqlqlqqaqkahvl 222
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE----------------- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 223 sesmnkALQEELTELKDEISLYESAAElgvlpgdsegDLSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEdpsKDEL 302
Cdd:COG1196 320 ------ELEEELAELEEELEELEEELE----------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE---AEEE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 303 ILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSKDGdsgmetktdtsekttkqlwLESSEAINREDILQLK 382
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE-------------------LEEALAELEEEEEEEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 383 NEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARcertyQQHHEAMKAQIRESLLAKHAVEKQHLL 462
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-----AARLLLLLEAEADYEGFLEGVKAALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 463 EVYEGTQSQLrSDLDKMNKEMAAVQECYLEVcrekdGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLK 542
Cdd:COG1196 517 AGLRGLAGAV-AVLIGVEAAYEAALEAALAA-----ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 543 TERQSWLQEQAAG-ATQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEqvacpaavsKAEAAAVLAEEQA 621
Cdd:COG1196 591 ALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE---------VTLEGEGGSAGGS 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 622 RQVQQEKELATKEALRKPEVELELKycEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSL 701
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAE--RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
650 660 670
....*....|....*....|....*....|....*...
gi 1907144135 702 ALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELE 739
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
78-838 |
3.92e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 3.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 78 FRVSEEKLTKKLRTTEITLE-------SLKQQLVELH-HSESLQRARE--------HHESIVASLTQKHEE------QVS 135
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDrledilnELERQLKSLErQAEKAERYKElkaelrelELALLVLRLEELREEleelqeELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 136 SLQKNLDATITALQEQESICTRLKDHVQQLERNQEAVR---LEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLq 212
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 213 lqqaqkahvlsESMNKALQEELTELKDEISlyesaaelgvlpgdsegdlsiELTESCVDLGIKKVNWKQSKANRVTQQEs 292
Cdd:TIGR02168 329 -----------ESKLDELAEELAELEEKLE---------------------ELKEELESLEAELEELEAELEELESRLE- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 293 pdedpSKDELILKLKTQVQRLltsnsvkRHLVSQLQSDLRECRETMEAFQQSKDGD----SGMETKTDTSEKTTKQLWLE 368
Cdd:TIGR02168 376 -----ELEEQLETLRSKVAQL-------ELQIASLNNEIERLEARLERLEDRRERLqqeiEELLKKLEEAELKELQAELE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 369 SSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDL------CNQMRQMVQEFDhDKQEAVA------------- 429
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqarLDSLERLQENLE-GFSEGVKallknqsglsgil 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 430 -------RCERTYQQhheAMKAQIRESL-----------------LAKHAVEKQHLLEVYEGTQSQLRSDldkmNKEMAA 485
Cdd:TIGR02168 523 gvlseliSVDEGYEA---AIEAALGGRLqavvvenlnaakkaiafLKQNELGRVTFLPLDSIKGTEIQGN----DREILK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 486 VQECYLEVCREKDGLESTLRKTME-------------KAQEQKRQlLEAREEYV-----------------RKLKLELEE 535
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldNALELAKK-LRPGYRIVtldgdlvrpggvitggsAKTNSSILE 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 536 KYQETLKTERQSWLQEQAAGATQQAEKESRQKLiQQLEKEwqskLDDSLAAWRKTTSDRGSQTEQVACPAAVSKAEAAAV 615
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEE----LEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 616 LAEEQARQVQQEKElaTKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALL-----RAQQQEWAKQ 690
Cdd:TIGR02168 750 AQLSKELTELEAEI--EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 691 QELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELELKDEEvpvivRAEVAKARTEWNKEKQEEIHK 770
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE-----RASLEEALALLRSELEELSEE 902
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907144135 771 IQEQNE-----EDYRQFLEDHRNKINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVE 838
Cdd:TIGR02168 903 LRELESkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
47-529 |
5.23e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 5.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 47 LRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSE---EKLTKKLRTTEITLESLKQQLVELHHSESLQRAREHHESIV 123
Cdd:COG4717 59 FKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQeelEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 124 ASLTQKhEEQVSSLQKNLDATITALQEQESICTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQS-GS 202
Cdd:COG4717 139 AELAEL-PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEElEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 203 VQEVAQLQLQLQQAQKAHVLSESMNKALQEELTELKDEISLYESAAELGVLPGDSEGDLSIELTESCVDLGIKKVNWKQS 282
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 283 KANRVTQQESPDEDPSKDELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSKDgdsgmETKTDTSEKTT 362
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE-----ELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 363 KQLwLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQHHEAM 442
Cdd:COG4717 373 AAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEEL 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 443 KAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQecylevcrekdGLESTLRKTMEKAQEQKR-QLLEA 521
Cdd:COG4717 452 REELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALK-----------LALELLEEAREEYREERLpPVLER 520
|
....*...
gi 1907144135 522 REEYVRKL 529
Cdd:COG4717 521 ASEYFSRL 528
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
8-535 |
8.82e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 8.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 8 KERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQngkeremQLEAQIAALEAQVEAFRVSEEKLTK 87
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE-------ELKEELESLEAELEELEAELEELES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 88 KLRTTEITLESLKQQLVELHHSES-----LQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQ--------ESI 154
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIAslnneIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleeleeelEEL 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 155 CTRLKDHVQQLERNQEAVRLEKTEL----------------INRLTRSLEDSQKQCAHLLQ-----SGSVQEVAQLQLQL 213
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALdaaerelaqlqarldsLERLQENLEGFSEGVKALLKnqsglSGILGVLSELISVD 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 214 QQAQKA--HVLSESMNKALQEELTELKDEISLYESAAE--LGVLPGDSEGDLSIE---------------LTESCVDLGI 274
Cdd:TIGR02168 533 EGYEAAieAALGGRLQAVVVENLNAAKKAIAFLKQNELgrVTFLPLDSIKGTEIQgndreilkniegflgVAKDLVKFDP 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 275 KKVNWKQS------------KANRVTQQESPDE--------------------------DPSKDELILKLKTQVQRLLTS 316
Cdd:TIGR02168 613 KLRKALSYllggvlvvddldNALELAKKLRPGYrivtldgdlvrpggvitggsaktnssILERRREIEELEEKIEELEEK 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 317 NS-------VKRHLVSQLQSDLRECR-ETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDilQLKNEVQVL 388
Cdd:TIGR02168 693 IAelekalaELRKELEELEEELEQLRkELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA--EIEELEERL 770
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 389 QKQNQELKEAEEKLRSTNQDLCNQMRQMVQ----------------EFDHDKQEAVARCERTY---QQHHEAMKAQIREs 449
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKAlrealdelraeltllnEEAANLRERLESLERRIaatERRLEDLEEQIEE- 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 450 lLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEyVRKL 529
Cdd:TIGR02168 850 -LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK-LAQL 927
|
....*.
gi 1907144135 530 KLELEE 535
Cdd:TIGR02168 928 ELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
58-575 |
9.55e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 9.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 58 KEREMQLEAQIAALEaqVEAFRVSEEKLTKKLRTTEITLESLKQQLVELHhsESLQRAREHHESIvasltqkhEEQVSSL 137
Cdd:COG1196 219 KEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELE--AELEELRLELEEL--------ELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 138 QKNLDATITALQEQESIctrlKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQAQ 217
Cdd:COG1196 287 QAEEYELLAELARLEQD----IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 218 KAHVLSESMNKALQEELTELKDEISLYESAAELgvlpgDSEGDLSIELTESCVDLGIKKVNWKQSKANRVTQQEspDEDP 297
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAA-----AELAAQLEELEEAEEALLERLERLEEELEELEEALA--ELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 298 SKDELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINRED 377
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 378 ILQLKNEVQVLQKQNQELKEAEEKLRST-----NQDLCNQMRQMVQEFDHDKQEAVARCER-------------TYQQHH 439
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkiraraalaAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 440 EAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLL 519
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907144135 520 EAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKE 575
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
280-812 |
1.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 280 KQSKANRVTQQESPDEDPSKDEL-ILKLKTQVQRLLTSNSVKRhlVSQLQSDLRECRETMEAFQQSK-DGDSGMETKTDT 357
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKKEEAKKK--ADAAKKKAEEKKKADEAKKKAEeDKKKADELKKAA 1414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 358 SEKTTKQLWLESSEAINREDilQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAvarcERTYQQ 437
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKAD--EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA----KKADEA 1488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 438 HHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLEST--LRKTMEKAQ-EQ 514
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAeeLKKAEEKKKaEE 1568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 515 KRQLLEAREEYVRKLklELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKL-IQQLEKEWQSKldDSLAAWRKTTSD 593
Cdd:PTZ00121 1569 AKKAEEDKNMALRKA--EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkAEELKKAEEEK--KKVEQLKKKEAE 1644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 594 RGSQTEQVacpaaVSKAEAAAVLAEEQARQVQQEKELAtkEALRKPEvELELKYCEIIAQKVETA--VQNARSRWIQELP 671
Cdd:PTZ00121 1645 EKKKAEEL-----KKAEEENKIKAAEEAKKAEEDKKKA--EEAKKAE-EDEKKAAEALKKEAEEAkkAEELKKKEAEEKK 1716
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 672 MLAEYKallRAQQQEWAKQQELavahrlslalseakeKWKSELENMKPNVMSVKELEE-KVHSLQKELELKDEEVPVIVR 750
Cdd:PTZ00121 1717 KAEELK---KAEEENKIKAEEA---------------KKEAEEDKKKAEEAKKDEEEKkKIAHLKKEEEKKAEEIRKEKE 1778
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907144135 751 AEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFLEDHrNKINEVLAAAKEDFVKQKAELLLQK 812
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGG-KEGNLVINDSKEMEDSAIKEVADSK 1839
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
9-586 |
1.71e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 9 ERQLDSLvEKLKDSERQVRYLSHQLLIVQDEKDglALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKLTKK 88
Cdd:COG4913 248 REQIELL-EPIRELAERYAAARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 89 LRTTE--------ITLESLKQQLvelhhsESLQRAREHHESIVASLtqkhEEQVSSLQKNLDATITALQEQESictRLKD 160
Cdd:COG4913 325 LDELEaqirgnggDRLEQLEREI------ERLERELEERERRRARL----EALLAALGLPLPASAEEFAALRA---EAAA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 161 HVQQLERNQEAVRLEKTELINR---LTRSLEDSQKQCAHLLQSGSVqevaqlqlqlqQAQKAHVLSESMNKALQE----- 232
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAAlrdLRRELRELEAEIASLERRKSN-----------IPARLLALRDALAEALGLdeael 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 233 ----ELTELKDEISLYESAAElGVLPGDSegdLSIELTESCVDLGIKKVNWKQSKANRVTQQESPD------EDPSKDEL 302
Cdd:COG4913 461 pfvgELIEVRPEEERWRGAIE-RVLGGFA---LTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGlpdperPRLDPDSL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 303 ILKLKTQvqrlltSNSVKRHLVSQLQSDL-RECRETMEAFQQSKDG--DSGMeTKT-------DTSEKTTKQLWLESS-- 370
Cdd:COG4913 537 AGKLDFK------PHPFRAWLEAELGRRFdYVCVDSPEELRRHPRAitRAGQ-VKGngtrhekDDRRRIRSRYVLGFDnr 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 371 EAIN--REDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLcnqmrQMVQEFDHDKQEaVARCERTYQQhHEAMKAQIRE 448
Cdd:COG4913 610 AKLAalEAELAELEEELAEAEERLEALEAELDALQERREAL-----QRLAEYSWDEID-VASAEREIAE-LEAELERLDA 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 449 SLLAKHAVEKQhlLEVYEGTQSQLRSDLDKMNKEMAAVQECylevcrekdglestlRKTMEKAQEQKRQLLEAREEYVRK 528
Cdd:COG4913 683 SSDDLAALEEQ--LEELEAELEELEEELDELKGEIGRLEKE---------------LEQAEEELDELQDRLEAAEDLARL 745
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907144135 529 -LKLELEEKYQETLKTERQS----WLQEQAAGATQQAEKESRQ--KLIQQLEKEWQ---SKLDDSLAA 586
Cdd:COG4913 746 eLRALLEERFAAALGDAVERelreNLEERIDALRARLNRAEEEleRAMRAFNREWPaetADLDADLES 813
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
5-816 |
5.57e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 5.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 5 NKAKERQLDSLVEKLKDSERQVRYLSHQLLIvQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEK 84
Cdd:pfam02463 208 KALEYYQLKEKLELEEEYLLYLDYLKLNEER-IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 85 LTKKLRTTEITLESLKQQLVELHHSESLQrarehhesivaslTQKHEEQVSSLQKNLDATITALQEQESICTRLKDHVQQ 164
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVDDEEK-------------LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREA 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 165 LERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQA--QKAHVLSESMNKALQEELTELKDEIS 242
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKeaQLLLELARQLEDLLKEEKKEELEILE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 243 LYESAAELGVLPgdsegdlSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEDPSKDELILKLKTQVQRLLTSNsvkrh 322
Cdd:pfam02463 434 EEEESIELKQGK-------LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQK----- 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 323 lvsqlqsdLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKL 402
Cdd:pfam02463 502 --------ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTEL 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 403 RSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKE 482
Cdd:pfam02463 574 PLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 483 maaVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQaagATQQAEK 562
Cdd:pfam02463 654 ---LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE---ELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 563 ESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVACpaavskaeAAAVLAEEQARQVQQEKELATKEALRKPEVE 642
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSE--------LSLKEKELAEEREKTEKLKVEEEKEEKLKAQ 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 643 LELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVM 722
Cdd:pfam02463 800 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEEL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 723 SVKELEEKVHSLQKELELKDEEVPVIVRAEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFLEDHrNKINEVLAAAKEDFV 802
Cdd:pfam02463 880 EEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLE-EADEKEKEENNKEEE 958
|
810
....*....|....
gi 1907144135 803 KQKAELLLQKETEF 816
Cdd:pfam02463 959 EERNKRLLLAKEEL 972
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
7-200 |
8.35e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 8.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 7 AKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKLT 86
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 87 KKLRTTEitlESLKQQLVELH------------HSESLQRArEHHESIVASLTQKHEEQVSSLQKN---LDATITALQEQ 151
Cdd:COG4942 97 AELEAQK---EELAELLRALYrlgrqpplalllSPEDFLDA-VRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1907144135 152 ESICTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQS 200
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
6-551 |
9.41e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 9.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 6 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDglalslrESQQLFQNGKEREMQLEAQIAALEaqveafrvseeKL 85
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL-------NIQKNIDKIKNKLLKLELLLSNLK-----------KK 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 86 TKKLRTTEITLESLKQQLVELhhseslqrarehhESIVASLTQKHEEQVSSLQKNLDATITALQEQESICTRLKDHVQQL 165
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQL-------------KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 166 ERNQEAVRlEKTELINRLTRSLEDSQKQCAHLLQ---------------------SGSVQEVAQLQLQLQQAQKAHVLSE 224
Cdd:TIGR04523 277 EQNNKKIK-ELEKQLNQLKSEISDLNNQKEQDWNkelkselknqekkleeiqnqiSQNNKIISQLNEQISQLKKELTNSE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 225 SMNKALQEELTELKDEISLYESAAElgvlpGDSEGDLSIELTESCVDLGIKKV-NWKQSKANRVTQQESPDEDPSKD--- 300
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKKENQ-----SYKQEIKNLESQINDLESKIQNQeKLNQQKDEQIKKLQQEKELLEKEier 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 301 --ELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSkdgdsgMETKTDTSEKTTKQLWLESSE--AINRE 376
Cdd:TIGR04523 431 lkETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRS------INKIKQNLEQKQKELKSKEKElkKLNEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 377 DIlQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQ----EAVARCERTYQQHHEAMKaQIRESLLA 452
Cdd:TIGR04523 505 KK-ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelkkENLEKEIDEKNKEIEELK-QTQKSLKK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 453 KHAvEKQHLLEVYEGTQSQLRSDL-------DKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEARE-- 523
Cdd:TIGR04523 583 KQE-EKQELIDQKEKEKKDLIKEIeekekkiSSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNkw 661
|
570 580
....*....|....*....|....*....
gi 1907144135 524 -EYVRKLKlELEEKYQETLKTERQsWLQE 551
Cdd:TIGR04523 662 pEIIKKIK-ESKTKIDDIIELMKD-WLKE 688
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
9-193 |
2.61e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 9 ERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAalEAQVEAFRVSEEKLTKK 88
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEE 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 89 LRTTEITLESLKQQLVELH-HSESLQRAREHHESIVASLtqkhEEQVSSLQKNLDATITALQEQESICTRLKDHVQQLER 167
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTlEKEYLEKEIQELQEQRIDL----KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
170 180
....*....|....*....|....*.
gi 1907144135 168 NQEAVRLEKTELINRLtRSLEDSQKQ 193
Cdd:TIGR02169 883 RLGDLKKERDELEAQL-RELERKIEE 907
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-575 |
2.75e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 6 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 85
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 86 TKKLRTTEITLESLKQQLVELHHS--------ESLQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQESICTR 157
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEEleeaeeelEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 158 LKDHVQQLERNQ------------------EAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQAQKA 219
Cdd:COG1196 402 LEELEEAEEALLerlerleeeleeleealaELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 220 HVLSESMNKALQEELTELKDEISLYESAA--------------ELGVLPGDS---EGDLSIELTESCVDLGIKKVN---- 278
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVkaalllaglrglagAVAVLIGVEaayEAALEAALAAALQNIVVEDDEvaaa 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 279 ----WKQSKANRVTQQESPDEDPSKDELILKLKTQVQRlltsnsvkrhLVSQLQSDLRECRETMEAFQQSKDGDSGMETK 354
Cdd:COG1196 562 aieyLKAAKAGRATFLPLDKIRARAALAAALARGAIGA----------AVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 355 TDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRstnqdlcnqMRQMVQEFDHDKQEAVARCERT 434
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE---------LEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 435 YQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQEcylevcrEKDGLESTLRKTMEKAQEQ 514
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL-------PEPPDLEELERELERLERE 775
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907144135 515 KRQL----LEAREEYVrklklELEEKYQEtLKTERqswlqeqaagATQQAEKESRQKLIQQLEKE 575
Cdd:COG1196 776 IEALgpvnLLAIEEYE-----ELEERYDF-LSEQR----------EDLEEARETLEEAIEEIDRE 824
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
93-870 |
3.20e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 93 EITLESLKQQLVELHhsESLQRAREHHESIVASLTQK---HEEQVSSLQKNLDATITALQEQESICTRLKDHVQQLERNQ 169
Cdd:pfam15921 77 ERVLEEYSHQVKDLQ--RRLNESNELHEKQKFYLRQSvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 170 EAVRLEKTELINRLTRSLEDSQKqcAHLLQSGSVQEVAQLQLQLQQAQKAHVLSE---------SMNKALQEELTELKDE 240
Cdd:pfam15921 155 EAAKCLKEDMLEDSNTQIEQLRK--MMLSHEGVLQEIRSILVDFEEASGKKIYEHdsmstmhfrSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 241 IS-----LYESAAELGVLPGDSEGDLSIEL-----------TESCVDLG--IKKVNWKQSKANRVTQQESPDEDPSKDEL 302
Cdd:pfam15921 233 ISylkgrIFPVEDQLEALKSESQNKIELLLqqhqdrieqliSEHEVEITglTEKASSARSQANSIQSQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 303 ILKLKtQVQRLLTSnsvkrhlVSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWleSSEAINREDilQLK 382
Cdd:pfam15921 313 SMYMR-QLSDLEST-------VSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQF--SQESGNLDD--QLQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 383 NEVQVLQKQNQELK-EAEEKLRSTNQDLCNQMR--QMVQEFDhDKQEAVARCERTYQQHHEAMKAQIRESLLAKHAveKQ 459
Cdd:pfam15921 381 KLLADLHKREKELSlEKEQNKRLWDRDTGNSITidHLRRELD-DRNMEVQRLEALLKAMKSECQGQMERQMAAIQG--KN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 460 HLLEVYEGTQSQLRSdldkmNKEMaaVQECYLEVCREKDGLESTLRKT--MEKAQEQKRQLLEAREEYVRKLKLELEEKY 537
Cdd:pfam15921 458 ESLEKVSSLTAQLES-----TKEM--LRKVVEELTAKKMTLESSERTVsdLTASLQEKERAIEATNAEITKLRSRVDLKL 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 538 QET--LKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLddSLAAWRKTTSDrgsqteqvacpaavskaeaaav 615
Cdd:pfam15921 531 QELqhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMT--QLVGQHGRTAG---------------------- 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 616 laEEQARQVQQEKELATKealrkpevELELKYCEIIAQKVETAVQNARSRW----IQELPMLAEYKALLRA----QQQEW 687
Cdd:pfam15921 587 --AMQVEKAQLEKEINDR--------RLELQEFKILKDKKDAKIRELEARVsdleLEKVKLVNAGSERLRAvkdiKQERD 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 688 AKQQELAVAHRLSLALSEAKEKWKSELENMKPNV-MSVKELEEKVHSLQKELE-----LKDEEVPVIVRAEVAKARTEWN 761
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMeTTTNKLKMQLKSAQSELEqtrntLKSMEGSDGHAMKVAMGMQKQI 736
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 762 KEKQEEIHKIQEQ---------NEEDYRQFLEDHRNKINEVLAAAKEDFVKQKAEL---------LLQKETEFQACLDQS 823
Cdd:pfam15921 737 TAKRGQIDALQSKiqfleeamtNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELevlrsqerrLKEKVANMEVALDKA 816
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 1907144135 824 rkewTLQEAQQTQVEIRQYEEDTLTVLAYLLKDTQLEYGGDSQDKQL 870
Cdd:pfam15921 817 ----SLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSM 859
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
7-169 |
3.42e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 7 AKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRE-SQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 85
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 86 TKKLRTTEITLESLKQQLVELHHSeslqrarehhesiVASLTQKHEEQVSSLQKNLDATITALQEQESICTRLKDHVQQL 165
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAE-------------AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
....
gi 1907144135 166 ERNQ 169
Cdd:COG4913 432 ERRK 435
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
359-1060 |
1.02e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 359 EKTTKQLwLESSEAINR-EDIL-QLKNEVQVLQKQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVARCERtYQ 436
Cdd:TIGR02168 175 KETERKL-ERTRENLDRlEDILnELERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LR 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 437 QHHEAMKAQIRESLLAKHAVEKQhlLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKR 516
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAE--LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 517 QLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGatQQAEKESRQKLIQQLEKewqsklddslaawrkttsdrgs 596
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELES--LEAELEELEAELEELES---------------------- 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 597 qteqvacpaavskaeaaavlaeeqaRQVQQEKELatkEALRKPEVELELKyceiiaqkvETAVQNARSRWIQELPMLAEY 676
Cdd:TIGR02168 373 -------------------------RLEELEEQL---ETLRSKVAQLELQ---------IASLNNEIERLEARLERLEDR 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 677 KALLRAQQQEWAKQQELAVAHRLSLALSEAKEkwksELEnmkpnvmsvkELEEKVHSLQKELELKDEEVPVIVRAEVAKA 756
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEE----ELE----------ELQEELERLEEALEELREELEEAEQALDAAE 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 757 RTEWNKEKQEEIHKIQEQNEEDYRQ---FLEDHRNKINEVLAAAKeDFVKQKAELLLQKETEFQACLDQSRKEwTLQEAQ 833
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEgvkALLKNQSGLSGILGVLS-ELISVDEGYEAAIEAALGGRLQAVVVE-NLNAAK 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 834 QTQVEIRQYEEDTLTVLAY-LLKDTQLEYGGDSQDKQLLEAMSACSSkwisvqyFEKVKACIQKALHDMLS--LLTDSVA 910
Cdd:TIGR02168 560 KAIAFLKQNELGRVTFLPLdSIKGTEIQGNDREILKNIEGFLGVAKD-------LVKFDPKLRKALSYLLGgvLVVDDLD 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 911 SEQEKRKVVKSSAdtvSWTSSEGDSAVPVPLpdSTSVRCAQSSAWLKAEAETEENSRVVEELIEENHDMKNKLEALRALC 990
Cdd:TIGR02168 633 NALELAKKLRPGY---RIVTLDGDLVRPGGV--ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 991 RTPPRSLSAGAAESAGpscSRQALEELRGQYIKAVRKIKRDMLRYIQESKERAAEMVKAEVLRERQETAR 1060
Cdd:TIGR02168 708 EELEEELEQLRKELEE---LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
470-844 |
1.17e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 470 SQLRSDLDKMNKEMAAvqecylEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERqswl 549
Cdd:PTZ00121 1075 SYKDFDFDAKEDNRAD------EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE---- 1144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 550 qeqaagaTQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVAcPAAVSKAEAAAVLAEEQARQVQQEKE 629
Cdd:PTZ00121 1145 -------ARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA-EELRKAEDARKAEAARKAEEERKAEE 1216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 630 LATKEALRKPEvelELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQElavaHRLSLALSEAKEK 709
Cdd:PTZ00121 1217 ARKAEDAKKAE---AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE----ARKADELKKAEEK 1289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 710 WKSELENMKPNVMSVKELEEKVHSLQKELELKDEEVPVIVRAEVAKARTEWNKEKQE-----------EIHKIQEQNEED 778
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaeaeaaadEAEAAEEKAEAA 1369
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 779 YRQfLEDHRNKINEVLAAAKE----DFVKQKAELLLQKETEFQACLDQSRKEwtlQEAQQTQVEIRQYEE 844
Cdd:PTZ00121 1370 EKK-KEEAKKKADAAKKKAEEkkkaDEAKKKAEEDKKKADELKKAAAAKKKA---DEAKKKAEEKKKADE 1435
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-748 |
2.53e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 504 LRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKL------IQQLEKEwQ 577
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELarleaeLERLEAR-L 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 578 SKLDDSLAAWRKTTSDRGSQTEQVAcpaavskaeaaavlaeeqARQVQQ-EKELATKEALRKpEVELELKYCEIIAQKVE 656
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQL------------------EREIERlERELEERERRRA-RLEALLAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 657 TAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQElavahrlslALSEAKEKWKSELENMKPNVMSV-KELEEKVHSLQ 735
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALR---------DLRRELRELEAEIASLERRKSNIpARLLALRDALA 450
|
250
....*....|...
gi 1907144135 736 KELELKDEEVPVI 748
Cdd:COG4913 451 EALGLDEAELPFV 463
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
495-1106 |
2.91e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 495 REKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEK--------------YQETLKTERQSWLQEQAAGATQQ- 559
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKkaleyyqlkeklelEEEYLLYLDYLKLNEERIDLLQEl 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 560 -AEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRK 638
Cdd:pfam02463 246 lRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 639 PEVELELKYCEIIAQKVETAVQNarsrwIQELPMLAEYKALLRAQQQEWAKQQELAVAHRL--SLALSEAKEKWK--SEL 714
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELE-----IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLesERLSSAAKLKEEelELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 715 ENMKPNVMSVKELEEKVH----SLQKELELKDEEVPVIVRAEVAKARTEWNKEKQEEIHKI--QEQNEEDYRQFLEDHRN 788
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEdllkEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLkdELELKKSEDLLKETQLV 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 789 KINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVEIRQYEEdtlTVLAYLLKDTQLEYGGDSQDK 868
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV---AVENYKVAISTAVIVEVSATA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 869 QLLEAMSAC-SSKWISVQYFEKVKACIQKALHDMLSLLTDSVASEQEKRKVVKSSADTVSW------------TSSEGDS 935
Cdd:pfam02463 558 DEVEERQKLvRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDdkrakvvegilkDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 936 AVPVPLPDSTSVRCAQSSAWLKAEAETEENSRVVEELIEENHDMKNKLEALRALCRTPPRSLSAGAAESAGPSCSRQALE 1015
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 1016 ELRGQYIKAVRKIKRDMLRYIQESKERAAEMVKAEVLRERQETARKMrnyYLSCLQQILQDNGKEEGAEKKIMSAASKLA 1095
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE---EKSELSLKEKELAEEREKTEKLKVEEEKEE 794
|
650
....*....|.
gi 1907144135 1096 TMAELLGTIAE 1106
Cdd:pfam02463 795 KLKAQEEELRA 805
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-586 |
3.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 375 REDILQLKNEVQVLQKQ----NQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQEAVARcERTYQQHHEAMKAQIRESL 450
Cdd:COG4942 33 QQEIAELEKELAALKKEekalLKQLAALERRIAALARRI-RALEQELAALEAELAELEKE-IAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 451 LAKHAVEKQHLLEVYEGTQS--QLRSDLDKMNKEMAAVQECYLEVCREKDGLEsTLRKTMEKAQEQKRQLLEAREEYVRK 528
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDflDAVRRLQYLKYLAPARREQAEELRADLAELA-ALRAELEAERAELEALLAELEEERAA 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907144135 529 LKLELEEKyQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDDSLAA 586
Cdd:COG4942 190 LEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
373-847 |
6.06e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 6.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 373 INREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQeavarcertyqqhheamkaqireslLA 452
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL-EELEAELEELREELE-------------------------KL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 453 KHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQEcYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLE 532
Cdd:COG4717 122 EKLLQLLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 533 LEE--KYQETLKTERQSWlQEQAAGATQQAEKESRQKLIQQLEKEWQSKLD-----DSLAAWRKTTSDRGSQTEQVACPA 605
Cdd:COG4717 201 LEElqQRLAELEEELEEA-QEELEELEEELEQLENELEAAALEERLKEARLllliaAALLALLGLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 606 AVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEVELELKYCEIIAqKVETAVQNARSRWIQELPMLAEYKALLRAQQQ 685
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLA-ALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 686 EWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELELKDEEVPVIVRAEVakaRTEWNKEKQ 765
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD---EEELEEELE 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 766 EEIHKIQEQNEEdyRQFLEDHRNKINEVLAAAKEDfvkQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVE--IRQYE 843
Cdd:COG4717 436 ELEEELEELEEE--LEELREELAELEAELEQLEED---GELAELLQELEELKAELRELAEEWAALKLALELLEeaREEYR 510
|
....
gi 1907144135 844 EDTL 847
Cdd:COG4717 511 EERL 514
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
378-739 |
1.34e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 378 ILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQM--RQMVQEFDHDKQEAVARCERTYQQHHeamkaqiresllaKHA 455
Cdd:pfam17380 277 IVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAEQE-------------RMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 456 VEKQHLLEvyegtqsQLRSDLDKMNKEMAAVQECYLEVCREKDgLEstlRKTMEKAQ--EQKRQLLEAreeyVRKLKLel 533
Cdd:pfam17380 344 MERERELE-------RIRQEERKRELERIRQEEIAMEISRMRE-LE---RLQMERQQknERVRQELEA----ARKVKI-- 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 534 eekyqetLKTERQSWLQEQAAGATQ--QAEKESRQKLIQQLEKEWQSKLDDSlaawRKTTSDRGSQTEQVacpaavskAE 611
Cdd:pfam17380 407 -------LEEERQRKIQQQKVEMEQirAEQEEARQREVRRLEEERAREMERV----RLEEQERQQQVERL--------RQ 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 612 AAAVLAEEQARQVQQEKELATKEALRKPEVELELKyceiiaQKVETAVQNARSRWIQELPMLAEYKALLRAQQ-----QE 686
Cdd:pfam17380 468 QEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE------ERKQAMIEEERKRKLLEKEMEERQKAIYEEERrreaeEE 541
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907144135 687 WAKQQELAVAHRLSLALSEAKEKwKSELENMKPNVMSVKELEEKvHSLQKELE 739
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKATEE-RSRLEAMEREREMMRQIVES-EKARAEYE 592
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
136-815 |
1.97e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 136 SLQKNLDATITALQEQESICTRLKDHVQQLERNQEAVRLEKTELI--NRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQL 213
Cdd:pfam05483 96 SIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIqeNKDLIKENNATRHLCNLLKETCARSAEKTKKYE 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 214 QQAQKAHVLSESMNKALQEELTELkDEISLYESAAELGVLPGDSEGDLSIELTESCVDlgiKKVNWKQSKANRVTQQESP 293
Cdd:pfam05483 176 YEREETRQVYMDLNNNIEKMILAF-EELRVQAENARLEMHFKLKEDHEKIQHLEEEYK---KEINDKEKQVSLLLIQITE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 294 DEDPSKD-------------ELILKLKTQVQRLLTSNSVKRHLVSQLQsDLRECRETMEAFQQSKDGDSGMETKTD---T 357
Cdd:pfam05483 252 KENKMKDltflleesrdkanQLEEKTKLQDENLKELIEKKDHLTKELE-DIKMSLQRSMSTQKALEEDLQIATKTIcqlT 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 358 SEKTTKQLWLESSEAINREDILQLKNEVQVLqkqnQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQ 437
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSL----EELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 438 HHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEmaaVQECYLEVCREKDGLESTLRKTMEKAQEQKRQ 517
Cdd:pfam05483 407 LEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE---IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 518 LLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQ-KLIQQLEkEWQSKLDDSLAAWRKTTSDRGs 596
Cdd:pfam05483 484 KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMlKQIENLE-EKEMNLRDELESVREEFIQKG- 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 597 qtEQVACpaavskaeaaavlaeeqarQVQQEKELATKEALRKPEVELELKYCEIIAQKVETAVQNaRSRWIQELPMlaEY 676
Cdd:pfam05483 562 --DEVKC-------------------KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEN-KNKNIEELHQ--EN 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 677 KALLRAQQQEWAKQQELAV-AHRLSLALSEAKEKW--------------KSELENMKPNVMSVKELEEKVHSLQKELELK 741
Cdd:pfam05483 618 KALKKKGSAENKQLNAYEIkVNKLELELASAKQKFeeiidnyqkeiedkKISEEKLLEEVEKAKAIADEAVKLQKEIDKR 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 742 DEEVPVIVRAEVAKARTEWNKEKQEE-----IHKIQEQNEEDYRQFLEDHRNKI-NEVLAAAKEDFVKQKAELLLQKETE 815
Cdd:pfam05483 698 CQHKIAEMVALMEKHKHQYDKIIEERdselgLYKNKEQEQSSAKAALEIELSNIkAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
9-577 |
3.23e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 9 ERQLDSLVEKLKDSERQVRYLSHQLLIVQDEK------------------DGLALSLRESQQLFQNGKEremQLEAQIAA 70
Cdd:pfam15921 277 EVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsmymrqlsdlestvSQLRSELREAKRMYEDKIE---ELEKQLVL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 71 LEAQVEAFRVSEEKLTKKLRTTEITLESLkqqLVELHHSESLQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQE 150
Cdd:pfam15921 354 ANSELTEARTERDQFSQESGNLDDQLQKL---LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQR 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 151 QESICTRLKDHVQ-QLERNQEAV--RLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQAQKAHVLSESMN 227
Cdd:pfam15921 431 LEALLKAMKSECQgQMERQMAAIqgKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 228 --KALQEELTELKDEISLyeSAAELGVLpgDSEGDLSIELTESCVDLGIKKVnwKQSKANRVTQQESpdedpskdELILK 305
Cdd:pfam15921 511 aiEATNAEITKLRSRVDL--KLQELQHL--KNEGDHLRNVQTECEALKLQMA--EKDKVIEILRQQI--------ENMTQ 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 306 LKTQVQRLLTSNSVKRhlvSQLQSDLRECRETMEAFQQSKDGDsgmETKTDTSEKTTKQLWLESSEAIN----------- 374
Cdd:pfam15921 577 LVGQHGRTAGAMQVEK---AQLEKEINDRRLELQEFKILKDKK---DAKIRELEARVSDLELEKVKLVNagserlravkd 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 375 -REDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTyqqhheamkaqiRESLLAK 453
Cdd:pfam15921 651 iKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT------------RNTLKSM 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 454 HAVEKqHLLEVYEGTQSQL---RSDLDKMNKEMAAVQECYLEVCREKDGL---ESTLRKTMEKAQEQKRQlLEAREEYVR 527
Cdd:pfam15921 719 EGSDG-HAMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLkeeKNKLSQELSTVATEKNK-MAGELEVLR 796
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1907144135 528 KLKLELEEKYQETLKTERQSWLQ-EQAAGATQQAEKES-RQKLIQQLE-KEWQ 577
Cdd:pfam15921 797 SQERRLKEKVANMEVALDKASLQfAECQDIIQRQEQESvRLKLQHTLDvKELQ 849
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1-242 |
3.52e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 1 MKVLNKAKER----QLDSLVEKLKDSERQVRyLSHQLLIVQDEKDGLALSlrESQQLFQNGKEREMQLEAQIAALEAQVE 76
Cdd:PHA02562 168 MDKLNKDKIRelnqQIQTLDMKIDHIQQQIK-TYNKNIEEQRKKNGENIA--RKQNKYDELVEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 77 AFRVSEEKLT---KKLRTTEITLESLKQQLVELHHSEslqraREHHEsiVASLTQKHEEQVSSLQKNLDaTITALQEQes 153
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMY-----EKGGV--CPTCTQQISEGPDRITKIKD-KLKELQHS-- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 154 iCTRLKDHVQQLErnqeavrlEKTELINRLTRSLEDSQKQCAHLLQ--SGSVQEVAQLQLQLQQAQKAHVLSESMNKALQ 231
Cdd:PHA02562 315 -LEKLDTAIDELE--------EIMDEFNEQSKKLLELKNKISTNKQslITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385
|
250
....*....|.
gi 1907144135 232 EELTELKDEIS 242
Cdd:PHA02562 386 DELDKIVKTKS 396
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
29-696 |
3.92e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.66 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 29 LSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKlTKKLRTTEITLESLKQQLVELHH 108
Cdd:pfam07111 61 LSQQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAE-AEGLRAALAGAEMVRKNLEEGSQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 109 SEsLQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQEsicTRLKDHVQQLERNQEAVRLekteLINRLTRSLE 188
Cdd:pfam07111 140 RE-LEEIQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLE---TKRAGEAKQLAEAQKEAEL----LRKQLSKTQE 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 189 DSQKQCAHL--LQSGSVQEVAQLQLQLQQAQKAHVLSESMN-------------KALQEELTELKDEISLYESAAELGVL 253
Cdd:pfam07111 212 ELEAQVTLVesLRKYVGEQVPPEVHSQTWELERQELLDTMQhlqedradlqatvELLQVRVQSLTHMLALQEEELTRKIQ 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 254 PGDSegdLSIELTESCVDLgikKVNWKQSKANRVTQQESpdEDPSKDELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRE 333
Cdd:pfam07111 292 PSDS---LEPEFPKKCRSL---LNRWREKVFALMVQLKA--QDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQD 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 334 CRETMEAFQQSKDGDSgMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQM 413
Cdd:pfam07111 364 KAAEVEVERMSAKGLQ-MELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAV 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 414 RQMvqefdHDKQEAVARCERTYQQHHEAMK-AQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKemaavqecylE 492
Cdd:pfam07111 443 RKV-----HTIKGLMARKVALAQLRQESCPpPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQ----------E 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 493 VCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVrKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQL 572
Cdd:pfam07111 508 VGRAREQGEAERQQLSEVAQQLEQELQRAQESLA-SVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEV 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 573 EKEWQSKLDDSLaawRKTTSDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQE--KELATKEALRKPEVELELKYCEI 650
Cdd:pfam07111 587 ETRLREQLSDTK---RRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEarKEEGQRLARRVQELERDKNLMLA 663
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1907144135 651 IAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVA 696
Cdd:pfam07111 664 TLQQEGLLSRYKQQRLLAVLPSGLDKKSVVSSPRPECSASAPIPAA 709
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
380-573 |
4.28e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 41.02 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 380 QLKNEVQVLQKQNQElkEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARcertYQQHHEAMKAQIRES----LLAKHA 455
Cdd:cd16269 98 QLEEKKEEFCKQNEE--ASSKRCQALLQELSAPLEEKISQGSYSVPGGYQL----YLEDREKLVEKYRQVprkgVKAEEV 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 456 VekQHLLEVYEGT-QSQLRSD--LDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLlearEEYVRKLKLE 532
Cdd:cd16269 172 L--QEFLQSKEAEaEAILQADqaLTEKEKEIEAERAKAEAAEQERKLLEEQQRELEQKLEDQERSY----EEHLRQLKEK 245
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907144135 533 LEEKYQETLKTERQ---SWLQEQAAGATQQAEKESR--QKLIQQLE 573
Cdd:cd16269 246 MEEERENLLKEQERaleSKLKEQEALLEEGFKEQAEllQEEIRSLK 291
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
623-845 |
4.49e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 623 QVQQEKELATKEALRKPEVELEL-KYCEIIAQKVETAVQNARSRwiQELPMLAEYKALLRAQQQEwaKQQELAVAHRLSL 701
Cdd:pfam17380 352 RIRQEERKRELERIRQEEIAMEIsRMRELERLQMERQQKNERVR--QELEAARKVKILEEERQRK--IQQQKVEMEQIRA 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 702 ALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELELKDEEVPVIVRAEVAKARTEwNKEKQEEIHKIQEQN-EEDYR 780
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRD-RKRAEEQRRKILEKElEERKQ 506
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907144135 781 QFLEDHRNKinEVLAAAKEDfvKQKAellLQKETEFQACLDQSRKEWTLQEAQQTQVEIRQYEED 845
Cdd:pfam17380 507 AMIEEERKR--KLLEKEMEE--RQKA---IYEEERRREAEEERRKQQEMEERRRIQEQMRKATEE 564
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
509-578 |
6.20e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 6.20e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907144135 509 EKAQEQKRQLLEAREEYVRKLKLELE---EKYQETLKTERQSwLQEQAAGATQQAEKESRQ--KLIQQLEKEWQS 578
Cdd:PRK00409 529 ERELEQKAEEAEALLKEAEKLKEELEekkEKLQEEEDKLLEE-AEKEAQQAIKEAKKEADEiiKELRQLQKGGYA 602
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
627-865 |
6.47e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 627 EKELATKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQqewakqqELAVAHRLSLALSEA 706
Cdd:PLN02939 159 EKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGAT-------EGLCVHSLSKELDVL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 707 KEK---WKSELENMKPNVMSVKELEEKVHSLQKE---LE--LKDEEVPVIV-RAEVAKARTE-----WNKEK--QEEIHK 770
Cdd:PLN02939 232 KEEnmlLKDDIQFLKAELIEVAETEERVFKLEKErslLDasLRELESKFIVaQEDVSKLSPLqydcwWEKVEnlQDLLDR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 771 IQEQNEE-----DYRQFLEDHRNKINEVLAAAK-EDFVKQKAELLLQKETEFQACLDQSRKEwTLQEAQQTQVEIRQYeE 844
Cdd:PLN02939 312 ATNQVEKaalvlDQNQDLRDKVDKLEASLKEANvSKFSSYKVELLQQKLKLLEERLQASDHE-IHSYIQLYQESIKEF-Q 389
|
250 260
....*....|....*....|.
gi 1907144135 845 DTLTVLAYLLKDTQLEYGGDS 865
Cdd:PLN02939 390 DTLSKLKEESKKRSLEHPADD 410
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
2-115 |
8.86e-03 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 40.38 E-value: 8.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 2 KVLNKAKERQLDSL---VEKLKDS-ERQVRYLSHQLLIVQDEKDGLalsLRESQQLFqngkeremqlEAQIAALEAQVEA 77
Cdd:pfam09798 7 ELLQQEKEKELEKLknsYEELKSShEEELEKLKQEVQKLEDEKKFL---LNELRSLS----------ATSPASSQSHETD 73
|
90 100 110
....*....|....*....|....*....|....*...
gi 1907144135 78 FRVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRA 115
Cdd:pfam09798 74 TDDSSSVSLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
626-844 |
9.58e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 626 QEKELATKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSL-ALS 704
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLsSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144135 705 EAKEKWKSElenMKPNVMSVKELEEKVHSLQKELE-LKDEEVPVIVRAEVAKARtewnkeKQEEIHKIQEQNEEDYRQFL 783
Cdd:TIGR02169 751 QEIENVKSE---LKELEARIEELEEDLHKLEEALNdLEARLSHSRIPEIQAELS------KLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907144135 784 EDhRNKINEVLAAAKEDFVKQKAELLLQKETEFQAC-LDQSRKEWTLQEAQQTQVEIRQYEE 844
Cdd:TIGR02169 822 NR-LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIeNLNGKKEELEEELEELEAALRDLES 882
|
|
|