|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
565-1074 |
1.47e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 565 ETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQvlqKQNQELKEAEEKLRStnqdlcNQMRQ 644
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK---KADEAKKKAEEAKKA------DEAKK 1322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 645 MVQEFDHDKQEAVARCERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCR 724
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 725 EKDGLESTLRKTMEKAQ--------EQKRQLLEAREEYVRKLKL-ELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQ 795
Cdd:PTZ00121 1403 DKKKADELKKAAAAKKKadeakkkaEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 796 KLIQQLEK---EWQSKLDDSL-AAWRKTTSDRGSQTEQV-ACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEv 870
Cdd:PTZ00121 1483 KKADEAKKkaeEAKKKADEAKkAAEAKKKADEAKKAEEAkKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE- 1561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 871 elELKYCEiiAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNV 950
Cdd:PTZ00121 1562 --EKKKAE--EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 951 MSVKELEEKvhslQKELELKDEEVPVIVRAEVAKARTEWNKEKQEEIHKiqeqNEEDYRQFLEDHRNKINEvlaaakedf 1030
Cdd:PTZ00121 1638 LKKKEAEEK----KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK----AEEDEKKAAEALKKEAEE--------- 1700
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1907144130 1031 vKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVEiRQYEED 1074
Cdd:PTZ00121 1701 -AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAK-KEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
595-1096 |
3.18e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 3.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 595 WLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFdHDKQEAVARCERTyQQHHEAMKAQ 674
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQD-IARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 675 IRESL---------LAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKR 745
Cdd:COG1196 314 LEERLeeleeelaeLEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 746 QLLEAREEYVRKLK-----LELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEwQSKLDDSLAAWRKTT 820
Cdd:COG1196 394 AAAELAAQLEELEEaeealLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 821 SDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELP 900
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 901 MLAEYKAllrAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSV------KELEEKVHSLQKELELKDEEV 974
Cdd:COG1196 553 VEDDEVA---AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlvasdlREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 975 PVIVRAEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFLEDHRNKINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRK 1054
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1907144130 1055 EWTLQEAQQTQVEIRQYEEDTLTVLAYLLKDTQLEYGGDSQD 1096
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
235-811 |
3.57e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 3.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 235 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 314
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 315 TKKLRTTEITLESLKQQLVELHHS-----ESLQRAREHHESIVASLTQKHEEQVSSLQKNLDAT----------ITALQE 379
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEElaeleEKLEELKEELESLEAELEELEAELEELESRLEELEeqletlrskvAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 380 QESI---CTRLKDHVQQLERNQEAVRLEKTELINRLTRS-LEDSQKQCAHL--LQSGSVQEVAQLQLQLQQAQKAHVLSE 453
Cdd:TIGR02168 395 IASLnneIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELeeELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 454 SMNKALQEELTELKDEI-----------SLYESAAEL--------GVLPG-------DSEGDLSIE--LTESCVDLGIKK 505
Cdd:TIGR02168 475 QALDAAERELAQLQARLdslerlqenleGFSEGVKALlknqsglsGILGVlselisvDEGYEAAIEaaLGGRLQAVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 506 VNW--------KQSKANRVT----QQESPDEDPSKDELILKLKTQVQRLLtSNSVKR---------------HLVSQLQS 558
Cdd:TIGR02168 555 LNAakkaiaflKQNELGRVTflplDSIKGTEIQGNDREILKNIEGFLGVA-KDLVKFdpklrkalsyllggvLVVDDLDN 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 559 DLRECRETMEAFQQ-SKDGD--------SGMETKTDTSEKTTKQLWLESSEAINR--EDILQLKNEVQVLQKQNQELKEA 627
Cdd:TIGR02168 634 ALELAKKLRPGYRIvTLDGDlvrpggviTGGSAKTNSSILERRREIEELEEKIEEleEKIAELEKALAELRKELEELEEE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 628 EEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQHHE-AMKAQIRESLLAKHAVEKQHLLEVYEGTQ-------- 698
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElTELEAEIEELEERLEEAEEELAEAEAEIEeleaqieq 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 699 -----SQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTL---RKTMEKAQEQKRQLLEAREEYvrKLKLELEEKYQETL 770
Cdd:TIGR02168 794 lkeelKALREALDELRAELTLLNEEAANLRERLESLERRIaatERRLEDLEEQIEELSEDIESL--AAEIEELEELIEEL 871
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1907144130 771 KTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDD 811
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
235-811 |
1.62e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 235 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKL 314
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 315 TKKLRTTEITLESLKQQLVELhhSESLQRAREHHESIVASLTQKhEEQVSSLQKNLDATITALQEQESictRLKDHVQQL 394
Cdd:COG1196 301 EQDIARLEERRRELEERLEEL--EEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAEAEE---ALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 395 ERNQEAVRLEKTELINRLTRSLEDSQKQcAHLLQSGSVQEVAQLQLQLQQAQKAHVLSESMNKALQEELTELKDEISLYE 474
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 475 SAAEL-GVLPGDSEGDLSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEDPSKDELILKLKTQVQRLLtsnsvkrHLV 553
Cdd:COG1196 454 LEEEEeALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA-------GAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 554 SQLQSDLRECRETMEAFqqskDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRS 633
Cdd:COG1196 527 AVLIGVEAAYEAALEAA----LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 634 TNQDLcnqmRQMVQEFDHDKQEAVArcERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMA 713
Cdd:COG1196 603 LVASD----LREADARYYVLGDTLL--GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 714 AVQECyLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKES 793
Cdd:COG1196 677 AEAEL-EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
570
....*....|....*...
gi 1907144130 794 RQKLIQqlEKEWQSKLDD 811
Cdd:COG1196 756 LPEPPD--LEELERELER 771
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
619-1328 |
3.64e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 3.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 619 KQNQELKEAEEKLRSTNQDLCNQMRqmvqefdhdKQEAVARCERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQ 698
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEVRKAEELR---------KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 699 SQLRSDLDKMNKEMAAVQECYLE--VCREKDGLESTLRKTME-KAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQ 775
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAhfARRQAAIKAEEARKADElKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 776 SWLQEQAAGATQQAEK--ESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQvacpaavskaEAAAVLAEEQARQV 853
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA----------KKKADAAKKKAEEK 1390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 854 QQEKELATKEALRKPEVElELKYCEIIAQKVETAVQNARS-RWIQELPMLAEykallRAQQQEWAKQQelavahrlslal 932
Cdd:PTZ00121 1391 KKADEAKKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAEEkKKADEAKKKAE-----EAKKADEAKKK------------ 1452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 933 seAKEKWKSEleNMKpnvmsvKELEEKVHSlqKELELKDEEVPvivRAEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFL 1012
Cdd:PTZ00121 1453 --AEEAKKAE--EAK------KKAEEAKKA--DEAKKKAEEAK---KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1013 EDHRNKINEVLAAAKedfvKQKAELLLQKETEFQAclDQSRKEWTLQEAQQTQV--EIRQYEEDTLTVLAYLLKDTQLEY 1090
Cdd:PTZ00121 1518 AEEAKKADEAKKAEE----AKKADEAKKAEEKKKA--DELKKAEELKKAEEKKKaeEAKKAEEDKNMALRKAEEAKKAEE 1591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1091 GGDSQDKQLLEAMSACSSKWISVQYFEKVKAciqkalhdmlslltDSVASEQEKRKVVKSSADTVSWTSSEGDSavpvpl 1170
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA--------------EELKKAEEEKKKVEQLKKKEAEEKKKAEE------ 1651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1171 pdstsVRCAQSSAWLKAEAET---EENSRVVEELIEENHDMKNKLEALRalcRTPPRSLSAGAAESAGPSCSRQAlEELR 1247
Cdd:PTZ00121 1652 -----LKKAEEENKIKAAEEAkkaEEDKKKAEEAKKAEEDEKKAAEALK---KEAEEAKKAEELKKKEAEEKKKA-EELK 1722
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1248 GQyiKAVRKIKRDMLRYIQESKERAAEMVK---------AEVLRERQETARKMRNYYLSCLQQIL--QDNGKEEGAEKKI 1316
Cdd:PTZ00121 1723 KA--EEENKIKAEEAKKEAEEDKKKAEEAKkdeeekkkiAHLKKEEEKKAEEIRKEKEAVIEEELdeEDEKRRMEVDKKI 1800
|
730
....*....|..
gi 1907144130 1317 MSAASKLATMAE 1328
Cdd:PTZ00121 1801 KDIFDNFANIIE 1812
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
307-1067 |
2.93e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 307 FRVSEEKLTKKLRTTEITLE-------SLKQQLVELH-HSESLQRARE--------HHESIVASLTQKHEE------QVS 364
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDrledilnELERQLKSLErQAEKAERYKElkaelrelELALLVLRLEELREEleelqeELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 365 SLQKNLDATITALQEQESICTRLKDHVQQLERNQEAVR---LEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLq 441
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 442 lqqaqkahvlsESMNKALQEELTELKDEISlyesaaelgvlpgdsegdlsiELTESCVDLGIKKVNWKQSKANRVTQQEs 521
Cdd:TIGR02168 329 -----------ESKLDELAEELAELEEKLE---------------------ELKEELESLEAELEELEAELEELESRLE- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 522 pdedpSKDELILKLKTQVQRLltsnsvkRHLVSQLQSDLRECRETMEAFQQSKDGD----SGMETKTDTSEKTTKQLWLE 597
Cdd:TIGR02168 376 -----ELEEQLETLRSKVAQL-------ELQIASLNNEIERLEARLERLEDRRERLqqeiEELLKKLEEAELKELQAELE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 598 SSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDL------CNQMRQMVQEFDhDKQEAVA------------- 658
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqarLDSLERLQENLE-GFSEGVKallknqsglsgil 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 659 -------RCERTYQQhheAMKAQIRESL-----------------LAKHAVEKQHLLEVYEGTQSQLRSDldkmNKEMAA 714
Cdd:TIGR02168 523 gvlseliSVDEGYEA---AIEAALGGRLqavvvenlnaakkaiafLKQNELGRVTFLPLDSIKGTEIQGN----DREILK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 715 VQECYLEVCREKDGLESTLRKTME-------------KAQEQKRQlLEAREEYV-----------------RKLKLELEE 764
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldNALELAKK-LRPGYRIVtldgdlvrpggvitggsAKTNSSILE 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 765 KYQETLKTERQSWLQEQAAGATQQAEKESRQKLiQQLEKEwqskLDDSLAAWRKTTSDRGSQTEQVACPAAVSKAEAAAV 844
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEE----LEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 845 LAEEQARQVQQEKElaTKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALL-----RAQQQEWAKQ 919
Cdd:TIGR02168 750 AQLSKELTELEAEI--EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 920 QELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELELKDEEvpvivRAEVAKARTEWNKEKQEEIHK 999
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE-----RASLEEALALLRSELEELSEE 902
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907144130 1000 IQEQNE-----EDYRQFLEDHRNKINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVE 1067
Cdd:TIGR02168 903 LRELESkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
625-937 |
3.05e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 625 KEAEEKLRSTNQ------DLCNQMRQMV------------------QEFDHDKQEAVARcERTYQQHHEAMKAQIREslL 680
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLeplerqaekaeryrelkeELKELEAELLLLK-LRELEAELEELEAELEE--L 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 681 AKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKL-K 759
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEeE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 760 LELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVAcpaaVSKA 839
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE----ELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 840 EAAAVLAEEQARQVQQEKELATKEALRKPEVELELKYCEIIAQKVETAVQNARsrwiQELPMLAEYKALLRAQQQEWAKQ 919
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA----LLELLAELLEEAALLEAALAELL 483
|
330
....*....|....*...
gi 1907144130 920 QELAVAHRLSLALSEAKE 937
Cdd:COG1196 484 EELAEAAARLLLLLEAEA 501
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
553-1077 |
3.50e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 553 VSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEvqvlQKQNQELKEAEEKLR 632
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE----KAEAAEKKKEEAKKK 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 633 StnqdlcnqmrqmvqEFDHDKQEAVARCERTYQQHHEAMKaqiRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEM 712
Cdd:PTZ00121 1380 A--------------DAAKKKAEEKKKADEAKKKAEEDKK---KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 713 AAVQECYLEVCREKDGLESTLRKTME--KAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTerqswlQEQAAGATQQAE 790
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK------AAEAKKKADEAK 1516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 791 KESRQKLIQQLEK-EWQSKLDDSLAAWRKTTSDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRKPE 869
Cdd:PTZ00121 1517 KAEEAKKADEAKKaEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 870 VELelKYCEIIAQKVETAVQNARSRWIQELPMLAE-----YKALLRAQQQEWAKQQELAVAHRLSlALSEAKEKWKSELE 944
Cdd:PTZ00121 1597 VMK--LYEEEKKMKAEEAKKAEEAKIKAEELKKAEeekkkVEQLKKKEAEEKKKAEELKKAEEEN-KIKAAEEAKKAEED 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 945 NMKPNvmSVKELEEKVHSLQKELELKDEEVPvivRAEVAKARTEWNKEKQEEIHKIQEQNE---EDYRQFLEDHRNKINE 1021
Cdd:PTZ00121 1674 KKKAE--EAKKAEEDEKKAAEALKKEAEEAK---KAEELKKKEAEEKKKAEELKKAEEENKikaEEAKKEAEEDKKKAEE 1748
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907144130 1022 vlaaAKEDFVKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVEIRQYEEDTLT 1077
Cdd:PTZ00121 1749 ----AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
292-968 |
3.80e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 292 QLEAQIAALEAQVEAfrvseeklTKKLRTteitlesLKQQLVELHHSESLQRAREHHESIvasltQKHEEQVSSLQKNLD 371
Cdd:COG1196 197 ELERQLEPLERQAEK--------AERYRE-------LKEELKELEAELLLLKLRELEAEL-----EELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 372 ATITALQEQESICTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEvaqlqlqlqqaqkahvl 451
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE----------------- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 452 sesmnkALQEELTELKDEISLYESAAElgvlpgdsegDLSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEdpsKDEL 531
Cdd:COG1196 320 ------ELEEELAELEEELEELEEELE----------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE---AEEE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 532 ILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSKDGdsgmetktdtsekttkqlwLESSEAINREDILQLK 611
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE-------------------LEEALAELEEEEEEEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 612 NEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARcertyQQHHEAMKAQIRESLLAKHAVEKQHLL 691
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-----AARLLLLLEAEADYEGFLEGVKAALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 692 EVYEGTQSQLrSDLDKMNKEMAAVQECYLEVcrekdGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLK 771
Cdd:COG1196 517 AGLRGLAGAV-AVLIGVEAAYEAALEAALAA-----ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 772 TERQSWLQEQAAG-ATQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEqvacpaavsKAEAAAVLAEEQA 850
Cdd:COG1196 591 ALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE---------VTLEGEGGSAGGS 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 851 RQVQQEKELATKEALRKPEVELELKycEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSL 930
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAE--RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
650 660 670
....*....|....*....|....*....|....*...
gi 1907144130 931 ALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELE 968
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
277-794 |
1.25e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 277 RESQQLF-QNGKEREM------QLEAQIAALEAQVEAFRVSEEKL---TKKLRTTEITLESLKQQLVELHHSESLQRARE 346
Cdd:COG4717 53 KEADELFkPQGRKPELnlkelkELEEELKEAEEKEEEYAELQEELeelEEELEELEAELEELREELEKLEKLLQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 347 HHESIVASLTQKhEEQVSSLQKNLDATITALQEQESICTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHL 426
Cdd:COG4717 133 ELEALEAELAEL-PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 427 LQS-GSVQEVAQLQLQLQQAQKAHVLSESMNKALQEELTELKDEISLYESAAELGVLPGDSEGDLSIELTESCVDLGIKK 505
Cdd:COG4717 212 EEElEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 506 VNWKQSKANRVTQQESPDEDPSKDELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSKDgdsgmETKTD 585
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE-----ELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 586 TSEKTTKQLwLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQ 665
Cdd:COG4717 367 ELEQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELE 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 666 QHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQecylevcrekdGLESTLRKTMEKAQEQKR 745
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALK-----------LALELLEEAREEYREERL 514
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1907144130 746 -QLLEAREEYVRKLkleLEEKYQETLKTERQSWLQEQAAGATQQAEKESR 794
Cdd:COG4717 515 pPVLERASEYFSRL---TDGRYRLIRIDEDLSLKVDTEDGRTRPVEELSR 561
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
237-764 |
1.49e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 237 KERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQngkeremQLEAQIAALEAQVEAFRVSEEKLTK 316
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE-------ELKEELESLEAELEELEAELEELES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 317 KLRTTEITLESLKQQLVELHHSES-----LQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQ--------ESI 383
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIAslnneIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleeleeelEEL 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 384 CTRLKDHVQQLERNQEAVRLEKTEL----------------INRLTRSLEDSQKQCAHLLQ-----SGSVQEVAQLQLQL 442
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALdaaerelaqlqarldsLERLQENLEGFSEGVKALLKnqsglSGILGVLSELISVD 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 443 QQAQKA--HVLSESMNKALQEELTELKDEISLYESAAE--LGVLPGDSEGDLSIE---------------LTESCVDLGI 503
Cdd:TIGR02168 533 EGYEAAieAALGGRLQAVVVENLNAAKKAIAFLKQNELgrVTFLPLDSIKGTEIQgndreilkniegflgVAKDLVKFDP 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 504 KKVNWKQS------------KANRVTQQESPDE--------------------------DPSKDELILKLKTQVQRLLTS 545
Cdd:TIGR02168 613 KLRKALSYllggvlvvddldNALELAKKLRPGYrivtldgdlvrpggvitggsaktnssILERRREIEELEEKIEELEEK 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 546 NS-------VKRHLVSQLQSDLRECR-ETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDilQLKNEVQVL 617
Cdd:TIGR02168 693 IAelekalaELRKELEELEEELEQLRkELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA--EIEELEERL 770
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 618 QKQNQELKEAEEKLRSTNQDLCNQMRQMVQ----------------EFDHDKQEAVARCERTY---QQHHEAMKAQIREs 678
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKAlrealdelraeltllnEEAANLRERLESLERRIaatERRLEDLEEQIEE- 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 679 lLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEyVRKL 758
Cdd:TIGR02168 850 -LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK-LAQL 927
|
....*.
gi 1907144130 759 KLELEE 764
Cdd:TIGR02168 928 ELRLEG 933
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
227-1045 |
3.51e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 3.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 227 IIQLQVLNKAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIaalEAQVEA 306
Cdd:pfam02463 196 KLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEK---LAQVLK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 307 FRVSEEKLTKKLRTTEITLESLKQQLVElhHSESLQRAREHHESIVasltQKHEEQVSSLQKNLDATITALQEQESICTR 386
Cdd:pfam02463 273 ENKEEEKEKKLQEEELKLLAKEEEELKS--ELLKLERRKVDDEEKL----KESEKEKKKAEKELKKEKEEIEELEKELKE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 387 LKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQA--QKAHVLSESMNKALQEELT 464
Cdd:pfam02463 347 LEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKeaQLLLELARQLEDLLKEEKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 465 ELKDEISLYESAAELGVLPgdsegdlSIELTESCVDLGIKKVNWKQSKANRVTQQESPDEDPSKDELILKLKTQVQRLLT 544
Cdd:pfam02463 427 EELEILEEEEESIELKQGK-------LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 545 SNsvkrhlvsqlqsdLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQEL 624
Cdd:pfam02463 500 QK-------------ESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 625 KEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTYQQHHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSD 704
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 705 LDKMNKEmaaVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQaag 784
Cdd:pfam02463 647 GLRKGVS---LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE--- 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 785 ATQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVACpaavskaeAAAVLAEEQARQVQQEKELATKEA 864
Cdd:pfam02463 721 ELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSE--------LSLKEKELAEEREKTEKLKVEEEK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 865 LRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELE 944
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 945 NMKPNVMSVKELEEKVHSLQKELELKDEEVPVIVRAEVAKA-RTEWNKEKQEEIHKIQEQNEEDYRQFLEDhrNKINEVL 1023
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEeKENEIEERIKEEAEILLKYEEEPEELLLE--EADEKEK 950
|
810 820
....*....|....*....|..
gi 1907144130 1024 AAAKEDFVKQKAELLLQKETEF 1045
Cdd:pfam02463 951 EENNKEEEEERNKRLLLAKEEL 972
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
287-804 |
3.77e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 287 KEREMQLEAQIAALEaqVEAFRVSEEKLTKKLRTTEITLESLKQQLVELHhsESLQRAREHHESIvasltqkhEEQVSSL 366
Cdd:COG1196 219 KEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELE--AELEELRLELEEL--------ELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 367 QKNLDATITALQEQESIctrlKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQAQ 446
Cdd:COG1196 287 QAEEYELLAELARLEQD----IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 447 KAHVLSESMNKALQEELTELKDEISLYESAAELgvlpgDSEGDLSIELTESCVDLGIKKVNWKQSKANRVTQQEspDEDP 526
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAA-----AELAAQLEELEEAEEALLERLERLEEELEELEEALA--ELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 527 SKDELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESSEAINRED 606
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 607 ILQLKNEVQVLQKQNQELKEAEEKLRST-----NQDLCNQMRQMVQEFDHDKQEAVARCER-------------TYQQHH 668
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkiraraalaAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 669 EAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLL 748
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907144130 749 EAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKE 804
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
235-780 |
4.56e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 235 KAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEK-------DGLALSLRESQQLFQNGK---EREMQLEAQIAALEAQV 304
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlniqkniDKIKNKLLKLELLLSNLKkkiQKNKSLESQISELKKQN 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 305 EAFRVSEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREHHESIVASLTQkHEEQVSSLQK---NLDATITAL--QE 379
Cdd:TIGR04523 228 NQLKDNIEKKQQEINEKTTEISNTQTQLNQL--KDEQNKIKKQLSEKQKELEQ-NNKKIKELEKqlnQLKSEISDLnnQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 380 QESICTRLKDHVQQLERNQEAVRLEKTE---LINRLTRSLEDSQKQCAHllqsgsvqevaqlqlqlqqaqkahvlSESMN 456
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQnnkIISQLNEQISQLKKELTN--------------------------SESEN 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 457 KALQEELTELKDEISLYESAAElgvlpGDSEGDLSIELTESCVDLGIKKV-NWKQSKANRVTQQESPDEDPSKD-----E 530
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQ-----SYKQEIKNLESQINDLESKIQNQeKLNQQKDEQIKKLQQEKELLEKEierlkE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 531 LILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSkdgdsgMETKTDTSEKTTKQLWLESSE--AINREDIl 608
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRS------INKIKQNLEQKQKELKSKEKElkKLNEEKK- 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 609 QLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQ----EAVARCERTYQQHHEAMKaQIRESLLAKHA 684
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelkkENLEKEIDEKNKEIEELK-QTQKSLKKKQE 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 685 vEKQHLLEVYEGTQSQLRSDL-------DKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLLEARE---EY 754
Cdd:TIGR04523 586 -EKQELIDQKEKEKKDLIKEIeekekkiSSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNkwpEI 664
|
570 580
....*....|....*....|....*.
gi 1907144130 755 VRKLKlELEEKYQETLKTERQsWLQE 780
Cdd:TIGR04523 665 IKKIK-ESKTKIDDIIELMKD-WLKE 688
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
238-815 |
4.66e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 238 ERQLDSLvEKLKDSERQVRYLSHQLLIVQDEKDglALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKLTKK 317
Cdd:COG4913 248 REQIELL-EPIRELAERYAAARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 318 LRTTE--------ITLESLKQQLvelhhsESLQRAREHHESIVASLtqkhEEQVSSLQKNLDATITALQEQESictRLKD 389
Cdd:COG4913 325 LDELEaqirgnggDRLEQLEREI------ERLERELEERERRRARL----EALLAALGLPLPASAEEFAALRA---EAAA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 390 HVQQLERNQEAVRLEKTELINR---LTRSLEDSQKQCAHLLQSGSVqevaqlqlqlqQAQKAHVLSESMNKALQE----- 461
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAAlrdLRRELRELEAEIASLERRKSN-----------IPARLLALRDALAEALGLdeael 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 462 ----ELTELKDEISLYESAAElGVLPGDSegdLSIELTESCVDLGIKKVNWKQSKANRVTQQESPD------EDPSKDEL 531
Cdd:COG4913 461 pfvgELIEVRPEEERWRGAIE-RVLGGFA---LTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGlpdperPRLDPDSL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 532 ILKLKTQvqrlltSNSVKRHLVSQLQSDL-RECRETMEAFQQSKDG--DSGMeTKT-------DTSEKTTKQLWLESS-- 599
Cdd:COG4913 537 AGKLDFK------PHPFRAWLEAELGRRFdYVCVDSPEELRRHPRAitRAGQ-VKGngtrhekDDRRRIRSRYVLGFDnr 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 600 EAIN--REDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLcnqmrQMVQEFDHDKQEaVARCERTYQQhHEAMKAQIRE 677
Cdd:COG4913 610 AKLAalEAELAELEEELAEAEERLEALEAELDALQERREAL-----QRLAEYSWDEID-VASAEREIAE-LEAELERLDA 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 678 SLLAKHAVEKQhlLEVYEGTQSQLRSDLDKMNKEMAAVQECylevcrekdglestlRKTMEKAQEQKRQLLEAREEYVRK 757
Cdd:COG4913 683 SSDDLAALEEQ--LEELEAELEELEEELDELKGEIGRLEKE---------------LEQAEEELDELQDRLEAAEDLARL 745
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907144130 758 -LKLELEEKYQETLKTERQS----WLQEQAAGATQQAEKESRQ--KLIQQLEKEWQ---SKLDDSLAA 815
Cdd:COG4913 746 eLRALLEERFAAALGDAVERelreNLEERIDALRARLNRAEEEleRAMRAFNREWPaetADLDADLES 813
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
509-1041 |
5.97e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 509 KQSKANRVTQQESPDEDPSKDEL-ILKLKTQVQRLLTSNSVKRhlVSQLQSDLRECRETMEAFQQSK-DGDSGMETKTDT 586
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKKEEAKKK--ADAAKKKAEEKKKADEAKKKAEeDKKKADELKKAA 1414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 587 SEKTTKQLWLESSEAINREDilQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAvarcERTYQQ 666
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKAD--EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA----KKADEA 1488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 667 HHEAMKAQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLEST--LRKTMEKAQ-EQ 743
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAeeLKKAEEKKKaEE 1568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 744 KRQLLEAREEYVRKLklELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKL-IQQLEKEWQSKldDSLAAWRKTTSD 822
Cdd:PTZ00121 1569 AKKAEEDKNMALRKA--EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkAEELKKAEEEK--KKVEQLKKKEAE 1644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 823 RGSQTEQVacpaaVSKAEAAAVLAEEQARQVQQEKELAtkEALRKPEvELELKYCEIIAQKVETA--VQNARSRWIQELP 900
Cdd:PTZ00121 1645 EKKKAEEL-----KKAEEENKIKAAEEAKKAEEDKKKA--EEAKKAE-EDEKKAAEALKKEAEEAkkAEELKKKEAEEKK 1716
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 901 MLAEYKallRAQQQEWAKQQELavahrlslalseakeKWKSELENMKPNVMSVKELEE-KVHSLQKELELKDEEVPVIVR 979
Cdd:PTZ00121 1717 KAEELK---KAEEENKIKAEEA---------------KKEAEEDKKKAEEAKKDEEEKkKIAHLKKEEEKKAEEIRKEKE 1778
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907144130 980 AEVAKARTEWNKEKQEEIHKIQEQNEEDYRQFLEDHrNKINEVLAAAKEDFVKQKAELLLQK 1041
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGG-KEGNLVINDSKEMEDSAIKEVADSK 1839
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
235-418 |
2.08e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 235 KAKERQLDSLVEKLKDSERQVRYLshqllivQDEKDGLALSLRESQQLFQNGKERE--MQLEAQIAALEAQVEAFRVSE- 311
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSd 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 312 --EKLTKKLRTTEITLESLKQQLVELHHSES-LQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQESICTRLK 388
Cdd:COG4913 686 dlAALEEQLEELEAELEELEEELDELKGEIGrLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER 765
|
170 180 190
....*....|....*....|....*....|
gi 1907144130 389 DHVQQLERNQEAVRLEKTELINRLTRSLED 418
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
236-429 |
3.09e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 3.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 236 AKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKLT 315
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 316 KKLRTTEitlESLKQQLVELH------------HSESLQRArEHHESIVASLTQKHEEQVSSLQKN---LDATITALQEQ 380
Cdd:COG4942 97 AELEAQK---EELAELLRALYrlgrqpplalllSPEDFLDA-VRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1907144130 381 ESICTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQS 429
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
229-804 |
3.37e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 229 QLQVLNKAKER---QLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVE 305
Cdd:COG1196 261 ELAELEAELEElrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 306 AFRVSEEKLTKKLRTTEITLESLKQQLVELHHS-ESLQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQESIC 384
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAElAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 385 TRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQsgsVQEVAQLQLQLQQAQKAHVLSESMNKALQEELT 464
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL---LAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 465 ELKDEISLYESAA--------------ELGVLPGDS---EGDLSIELTESCVDLGIKKVN--------WKQSKANRVTQQ 519
Cdd:COG1196 498 EAEADYEGFLEGVkaalllaglrglagAVAVLIGVEaayEAALEAALAAALQNIVVEDDEvaaaaieyLKAAKAGRATFL 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 520 ESPDEDPSKDELILKLKTQVQRlltsnsvkrhLVSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLESS 599
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGA----------AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 600 EAINREDILQLKNEVQVLQKQNQELKEAEEKLRstnqdlcnqMRQMVQEFDHDKQEAVARCERTYQQHHEAMKAQIRESL 679
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE---------LEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 680 LAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQEcylevcrEKDGLESTLRKTMEKAQEQKRQL----LEAREEYV 755
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL-------PEPPDLEELERELERLEREIEALgpvnLLAIEEYE 791
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1907144130 756 rklklELEEKYQEtLKTERQSwLQEqaagatqqaEKESRQKLIQQLEKE 804
Cdd:COG1196 792 -----ELEERYDF-LSEQRED-LEE---------ARETLEEAIEEIDRE 824
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
322-1099 |
3.77e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 322 EITLESLKQQLVELHhsESLQRAREHHESIVASLTQK---HEEQVSSLQKNLDATITALQEQESICTRLKDHVQQLERNQ 398
Cdd:pfam15921 77 ERVLEEYSHQVKDLQ--RRLNESNELHEKQKFYLRQSvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 399 EAVRLEKTELINRLTRSLEDSQKqcAHLLQSGSVQEVAQLQLQLQQAQKAHVLSE---------SMNKALQEELTELKDE 469
Cdd:pfam15921 155 EAAKCLKEDMLEDSNTQIEQLRK--MMLSHEGVLQEIRSILVDFEEASGKKIYEHdsmstmhfrSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 470 IS-----LYESAAELGVLPGDSEGDLSIEL-----------TESCVDLG--IKKVNWKQSKANRVTQQESPDEDPSKDEL 531
Cdd:pfam15921 233 ISylkgrIFPVEDQLEALKSESQNKIELLLqqhqdrieqliSEHEVEITglTEKASSARSQANSIQSQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 532 ILKLKtQVQRLLTSnsvkrhlVSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWleSSEAINREDilQLK 611
Cdd:pfam15921 313 SMYMR-QLSDLEST-------VSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQF--SQESGNLDD--QLQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 612 NEVQVLQKQNQELK-EAEEKLRSTNQDLCNQMR--QMVQEFDhDKQEAVARCERTYQQHHEAMKAQIRESLLAKHAveKQ 688
Cdd:pfam15921 381 KLLADLHKREKELSlEKEQNKRLWDRDTGNSITidHLRRELD-DRNMEVQRLEALLKAMKSECQGQMERQMAAIQG--KN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 689 HLLEVYEGTQSQLRSdldkmNKEMaaVQECYLEVCREKDGLESTLRKT--MEKAQEQKRQLLEAREEYVRKLKLELEEKY 766
Cdd:pfam15921 458 ESLEKVSSLTAQLES-----TKEM--LRKVVEELTAKKMTLESSERTVsdLTASLQEKERAIEATNAEITKLRSRVDLKL 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 767 QET--LKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLddSLAAWRKTTSDrgsqteqvacpaavskaeaaav 844
Cdd:pfam15921 531 QELqhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMT--QLVGQHGRTAG---------------------- 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 845 laEEQARQVQQEKELATKealrkpevELELKYCEIIAQKVETAVQNARSR----WIQELPMLAEYKALLRA----QQQEW 916
Cdd:pfam15921 587 --AMQVEKAQLEKEINDR--------RLELQEFKILKDKKDAKIRELEARvsdlELEKVKLVNAGSERLRAvkdiKQERD 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 917 AKQQELAVAHRLSLALSEAKEKWKSELENMKPNV-MSVKELEEKVHSLQKELE-----LKDEEVPVIVRAEVAKARTEWN 990
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMeTTTNKLKMQLKSAQSELEqtrntLKSMEGSDGHAMKVAMGMQKQI 736
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 991 KEKQEEIHKIQEQ---------NEEDYRQFLEDHRNKINEVLAAAKEDFVKQKAEL---------LLQKETEFQACLDQS 1052
Cdd:pfam15921 737 TAKRGQIDALQSKiqfleeamtNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELevlrsqerrLKEKVANMEVALDKA 816
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 1907144130 1053 rkewTLQEAQQTQVEIRQYEEDTLTVLAYLLKDTQLEYGGDSQDKQL 1099
Cdd:pfam15921 817 ----SLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSM 859
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
588-1289 |
1.07e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 588 EKTTKQLwLESSEAINR-EDIL-QLKNEVQVLQKQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVARCERtYQ 665
Cdd:TIGR02168 175 KETERKL-ERTRENLDRlEDILnELERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LR 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 666 QHHEAMKAQIRESLLAKHAVEKQhlLEVYEGTQSQLRSDLDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKR 745
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAE--LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 746 QLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGatQQAEKESRQKLIQQLEKewqsklddslaawrkttsdrgs 825
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELES--LEAELEELEAELEELES---------------------- 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 826 qteqvacpaavskaeaaavlaeeqaRQVQQEKELatkEALRKPEVELELKyceiiaqkvETAVQNARSRWIQELPMLAEY 905
Cdd:TIGR02168 373 -------------------------RLEELEEQL---ETLRSKVAQLELQ---------IASLNNEIERLEARLERLEDR 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 906 KALLRAQQQEWAKQQELAVAHRLSLALSEAKEkwksELEnmkpnvmsvkELEEKVHSLQKELELKDEEVPVIVRAEVAKA 985
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEE----ELE----------ELQEELERLEEALEELREELEEAEQALDAAE 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 986 RTEWNKEKQEEIHKIQEQNEEDYRQ---FLEDHRNKINEVLAAAKeDFVKQKAELLLQKETEFQACLDQSRKEwTLQEAQ 1062
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEgvkALLKNQSGLSGILGVLS-ELISVDEGYEAAIEAALGGRLQAVVVE-NLNAAK 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1063 QTQVEIRQYEEDTLTVLAY-LLKDTQLEYGGDSQDKQLLEAMSACSSkwisvqyFEKVKACIQKALHDMLS--LLTDSVA 1139
Cdd:TIGR02168 560 KAIAFLKQNELGRVTFLPLdSIKGTEIQGNDREILKNIEGFLGVAKD-------LVKFDPKLRKALSYLLGgvLVVDDLD 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1140 SEQEKRKVVKSSAdtvSWTSSEGDSAVPVPLpdSTSVRCAQSSAWLKAEAETEENSRVVEELIEENHDMKNKLEALRALC 1219
Cdd:TIGR02168 633 NALELAKKLRPGY---RIVTLDGDLVRPGGV--ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1220 RTPPRSLSAGAAESAGpscSRQALEELRGQYIKAVRKIKRDMLRYIQESKERAAEMVKAEVLRERQETAR 1289
Cdd:TIGR02168 708 EELEEELEQLRKELEE---LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
238-422 |
1.39e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 238 ERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAalEAQVEAFRVSEEKLTKK 317
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEE 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 318 LRTTEITLESLKQQLVELH-HSESLQRAREHHESIVASLtqkhEEQVSSLQKNLDATITALQEQESICTRLKDHVQQLER 396
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTlEKEYLEKEIQELQEQRIDL----KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
170 180
....*....|....*....|....*.
gi 1907144130 397 NQEAVRLEKTELINRLtRSLEDSQKQ 422
Cdd:TIGR02169 883 RLGDLKKERDELEAQL-RELERKIEE 907
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
724-1335 |
3.28e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 3.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 724 REKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEK--------------YQETLKTERQSWLQEQAAGATQQ- 788
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKkaleyyqlkeklelEEEYLLYLDYLKLNEERIDLLQEl 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 789 -AEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQEKELATKEALRK 867
Cdd:pfam02463 246 lRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 868 PEVELELKYCEIIAQKVETAVQNarsrwIQELPMLAEYKALLRAQQQEWAKQQELAVAHRL--SLALSEAKEKWK--SEL 943
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELE-----IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLesERLSSAAKLKEEelELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 944 ENMKPNVMSVKELEEKV----HSLQKELELKDEEVPVIVRAEVAKARTEWNKEKQEEIHKI--QEQNEEDYRQFLEDHRN 1017
Cdd:pfam02463 401 SEEEKEAQLLLELARQLedllKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLkdELELKKSEDLLKETQLV 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1018 KINEVLAAAKEDFVKQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVEIRQYEEdtlTVLAYLLKDTQLEYGGDSQDK 1097
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV---AVENYKVAISTAVIVEVSATA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1098 QLLEAMSAC-SSKWISVQYFEKVKACIQKALHDMLSLLTDSVASEQEKRKVVKSSADTVSW------------TSSEGDS 1164
Cdd:pfam02463 558 DEVEERQKLvRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDdkrakvvegilkDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1165 AVPVPLPDSTSVRCAQSSAWLKAEAETEENSRVVEELIEENHDMKNKLEALRALCRTPPRSLSAGAAESAGPSCSRQALE 1244
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1245 ELRGQYIKAVRKIKRDMLRYIQESKERAAEMVKAEVLRERQETARKMrnyYLSCLQQILQDNGKEEGAEKKIMSAASKLA 1324
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE---EKSELSLKEKELAEEREKTEKLKVEEEKEE 794
|
650
....*....|.
gi 1907144130 1325 TMAELLGTIAE 1335
Cdd:pfam02463 795 KLKAQEEELRA 805
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
699-1073 |
8.27e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 8.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 699 SQLRSDLDKMNKEMAAvqecylEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERqswl 778
Cdd:PTZ00121 1075 SYKDFDFDAKEDNRAD------EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE---- 1144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 779 qeqaagaTQQAEKESRQKLIQQLEKEWQSKLDDSLAAWRKTTSDRGSQTEQVAcPAAVSKAEAAAVLAEEQARQVQQEKE 858
Cdd:PTZ00121 1145 -------ARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA-EELRKAEDARKAEAARKAEEERKAEE 1216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 859 LATKEALRKPEvelELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQElavaHRLSLALSEAKEK 938
Cdd:PTZ00121 1217 ARKAEDAKKAE---AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE----ARKADELKKAEEK 1289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 939 WKSELENMKPNVMSVKELEEKVHSLQKELELKDEEVPVIVRAEVAKARTEWNKEKQE-----------EIHKIQEQNEED 1007
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaeaeaaadEAEAAEEKAEAA 1369
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1008 YRQfLEDHRNKINEVLAAAKE----DFVKQKAELLLQKETEFQACLDQSRKEwtlQEAQQTQVEIRQYEE 1073
Cdd:PTZ00121 1370 EKK-KEEAKKKADAAKKKAEEkkkaDEAKKKAEEDKKKADELKKAAAAKKKA---DEAKKKAEEKKKADE 1435
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
229-428 |
9.10e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 9.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 229 QLQVLNKAKERQLDSLVEKLKDSER-------QVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALE 301
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAeveqleeRIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 302 AQVEAFRVSEEKLTKKLRTTEITLESLKQQLvelhhsESLQRAREHHESIVASLTQKHE---EQVSSLQKNLDATITALQ 378
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERL------ESLERRIAATERRLEDLEEQIEelsEDIESLAAEIEELEELIE 869
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1907144130 379 EQESICTRLKDHVQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAHLLQ 428
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEEL-RELESKRSELRRELE 918
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
604-815 |
1.32e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 604 REDILQLKNEVQVLQKQ----NQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQEAVARcERTYQQHHEAMKAQIRESL 679
Cdd:COG4942 33 QQEIAELEKELAALKKEekalLKQLAALERRIAALARRI-RALEQELAALEAELAELEKE-IAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 680 LAKHAVEKQHLLEVYEGTQS--QLRSDLDKMNKEMAAVQECYLEVCREKDGLEsTLRKTMEKAQEQKRQLLEAREEYVRK 757
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDflDAVRRLQYLKYLAPARREQAEELRADLAELA-ALRAELEAERAELEALLAELEEERAA 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907144130 758 LKLELEEKyQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLEKEWQSKLDDSLAA 815
Cdd:COG4942 190 LEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
602-1076 |
1.41e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 602 INREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQeavarcertyqqhheamkaqireslLA 681
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL-EELEAELEELREELE-------------------------KL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 682 KHAVEKQHLLEVYEGTQSQLRSDLDKMNKEMAAVQEcYLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVRKLKLE 761
Cdd:COG4717 122 EKLLQLLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 762 LEE--KYQETLKTERQSWlQEQAAGATQQAEKESRQKLIQQLEKEWQSKLD-----DSLAAWRKTTSDRGSQTEQVACPA 834
Cdd:COG4717 201 LEElqQRLAELEEELEEA-QEELEELEEELEQLENELEAAALEERLKEARLllliaAALLALLGLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 835 AVSKAEAAAVLAEEQARQVQQEKELATKEALRKPEVELELKYCEIIAqKVETAVQNARSRWIQELPMLAEYKALLRAQQQ 914
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLA-ALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 915 EWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELELKDEEVPVIVRAEVakaRTEWNKEKQ 994
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD---EEELEEELE 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 995 EEIHKIQEQNEEdyRQFLEDHRNKINEVLAAAKEDfvkQKAELLLQKETEFQACLDQSRKEWTLQEAQQTQVE--IRQYE 1072
Cdd:COG4717 436 ELEEELEELEEE--LEELREELAELEAELEQLEED---GELAELLQELEELKAELRELAEEWAALKLALELLEeaREEYR 510
|
....
gi 1907144130 1073 EDTL 1076
Cdd:COG4717 511 EERL 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
733-977 |
1.73e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 733 LRKTMEKAQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKL------IQQLEKEwQ 806
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELarleaeLERLEAR-L 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 807 SKLDDSLAAWRKTTSDRGSQTEQVAcpaavskaeaaavlaeeqARQVQQ-EKELATKEALRKpEVELELKYCEIIAQKVE 885
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQL------------------EREIERlERELEERERRRA-RLEALLAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 886 TAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQElavahrlslALSEAKEKWKSELENMKPNVMSV-KELEEKVHSLQ 964
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALR---------DLRRELRELEAEIASLERRKSNIpARLLALRDALA 450
|
250
....*....|...
gi 1907144130 965 KELELKDEEVPVI 977
Cdd:COG4913 451 EALGLDEAELPFV 463
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
365-1044 |
1.92e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 365 SLQKNLDATITALQEQESICTRLKDHVQQLERNQEAVRLEKTELI--NRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQL 442
Cdd:pfam05483 96 SIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIqeNKDLIKENNATRHLCNLLKETCARSAEKTKKYE 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 443 QQAQKAHVLSESMNKALQEELTELkDEISLYESAAELGVLPGDSEGDLSIELTESCVDlgiKKVNWKQSKANRVTQQESP 522
Cdd:pfam05483 176 YEREETRQVYMDLNNNIEKMILAF-EELRVQAENARLEMHFKLKEDHEKIQHLEEEYK---KEINDKEKQVSLLLIQITE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 523 DEDPSKD-------------ELILKLKTQVQRLLTSNSVKRHLVSQLQsDLRECRETMEAFQQSKDGDSGMETKTD---T 586
Cdd:pfam05483 252 KENKMKDltflleesrdkanQLEEKTKLQDENLKELIEKKDHLTKELE-DIKMSLQRSMSTQKALEEDLQIATKTIcqlT 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 587 SEKTTKQLWLESSEAINREDILQLKNEV----QVLQKQNQELKEAEEKLRSTNQDLCNQMRQMvqefdhdkqEAVARCER 662
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTcsleELLRTEQQRLEKNEDQLKIITMELQKKSSEL---------EEMTKFKN 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 663 TYQQHHEAMKAQIRES---LLAKHAVEKqhLLEVYEGTQSQLRSDLDKMNKEmaaVQECYLEVCREKDGLESTLRKTMEK 739
Cdd:pfam05483 402 NKEVELEELKKILAEDeklLDEKKQFEK--IAEELKGKEQELIFLLQAREKE---IHDLEIQLTAIKTSEEHYLKEVEDL 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 740 AQEQKRQLLEAREEYVRKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQ-KLIQQLEkEWQSKLDDSLAAWRK 818
Cdd:pfam05483 477 KTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMlKQIENLE-EKEMNLRDELESVRE 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 819 TTSDRGsqtEQVACpaavskaeaaavlaeeqarQVQQEKELATKEALRKPEVELELKYCEIIAQKVETAVQNaRSRWIQE 898
Cdd:pfam05483 556 EFIQKG---DEVKC-------------------KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEN-KNKNIEE 612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 899 LPMlaEYKALLRAQQQEWAKQQELAV-AHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVH--------------SL 963
Cdd:pfam05483 613 LHQ--ENKALKKKGSAENKQLNAYEIkVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLeevekakaiadeavKL 690
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 964 QKELELKDEEVPVIVRAEVAKARTEWNKEKQEE-----IHKIQEQNEEDYRQFLEDHRNKI-NEVLAAAKEDFVKQKAEL 1037
Cdd:pfam05483 691 QKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERdselgLYKNKEQEQSSAKAALEIELSNIkAELLSLKKQLEIEKEEKE 770
|
....*..
gi 1907144130 1038 LLQKETE 1044
Cdd:pfam05483 771 KLKMEAK 777
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
229-344 |
3.79e-04 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 45.00 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 229 QLQVLNKAKERQLDSL---VEKLKDS-ERQVRYLSHQLLIVQDEKDGLalsLRESQQLFqngkeremqlEAQIAALEAQV 304
Cdd:pfam09798 5 KLELLQQEKEKELEKLknsYEELKSShEEELEKLKQEVQKLEDEKKFL---LNELRSLS----------ATSPASSQSHE 71
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1907144130 305 EAFRVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRA 344
Cdd:pfam09798 72 TDTDDSSSVSLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
226-806 |
4.30e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 226 HIIQLQVLNKAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEK------------------DGLALSLRESQQLFQNGK 287
Cdd:pfam15921 265 HQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsmymrqlsdlestvSQLRSELREAKRMYEDKI 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 288 EremQLEAQIAALEAQVEAFRVSEEKLTKKLRTTEITLESLkqqLVELHHSESLQRAREHHESIVASLTQKHEEQVSSLQ 367
Cdd:pfam15921 345 E---ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL---LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 368 KNLDATITALQEQESICTRLKDHVQ-QLERNQEAV--RLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQLQLQQ 444
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIqgKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTV 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 445 AQKAHVLSESMN--KALQEELTELKDEISLyeSAAELGVLpgDSEGDLSIELTESCVDLGIKKVnwKQSKANRVTQQESp 522
Cdd:pfam15921 499 SDLTASLQEKERaiEATNAEITKLRSRVDL--KLQELQHL--KNEGDHLRNVQTECEALKLQMA--EKDKVIEILRQQI- 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 523 dedpskdELILKLKTQVQRLLTSNSVKRhlvSQLQSDLRECRETMEAFQQSKDGDsgmETKTDTSEKTTKQLWLESSEAI 602
Cdd:pfam15921 572 -------ENMTQLVGQHGRTAGAMQVEK---AQLEKEINDRRLELQEFKILKDKK---DAKIRELEARVSDLELEKVKLV 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 603 N------------REDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARCERTyqqhhea 670
Cdd:pfam15921 639 NagserlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT------- 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 671 mkaqiRESLLAKHAVEKqHLLEVYEGTQSQL---RSDLDKMNKEMAAVQECYLEVCREKDGL---ESTLRKTMEKAQEQK 744
Cdd:pfam15921 712 -----RNTLKSMEGSDG-HAMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLkeeKNKLSQELSTVATEK 785
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907144130 745 RQlLEAREEYVRKLKLELEEKYQETLKTERQSWLQ-EQAAGATQQAEKES-RQKLIQQLE-KEWQ 806
Cdd:pfam15921 786 NK-MAGELEVLRSQERRLKEKVANMEVALDKASLQfAECQDIIQRQEQESvRLKLQHTLDvKELQ 849
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
607-968 |
5.56e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 607 ILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQM--RQMVQEFDHDKQEAVARCERTYQQHHeamkaqiresllaKHA 684
Cdd:pfam17380 277 IVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAEQE-------------RMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 685 VEKQHLLEvyegtqsQLRSDLDKMNKEMAAVQECYLEVCREKDgLEstlRKTMEKAQ--EQKRQLLEAreeyVRKLKLel 762
Cdd:pfam17380 344 MERERELE-------RIRQEERKRELERIRQEEIAMEISRMRE-LE---RLQMERQQknERVRQELEA----ARKVKI-- 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 763 eekyqetLKTERQSWLQEQAAGATQ--QAEKESRQKLIQQLEKEWQSKLDDSlaawRKTTSDRGSQTEQVacpaavskAE 840
Cdd:pfam17380 407 -------LEEERQRKIQQQKVEMEQirAEQEEARQREVRRLEEERAREMERV----RLEEQERQQQVERL--------RQ 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 841 AAAVLAEEQARQVQQEKELATKEALRKPEVELELKyceiiaQKVETAVQNARSRWIQELPMLAEYKALLRAQQ-----QE 915
Cdd:pfam17380 468 QEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE------ERKQAMIEEERKRKLLEKEMEERQKAIYEEERrreaeEE 541
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907144130 916 WAKQQELAVAHRLSLALSEAKEKwKSELENMKPNVMSVKELEEKvHSLQKELE 968
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKATEE-RSRLEAMEREREMMRQIVES-EKARAEYE 592
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
258-925 |
6.12e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 44.74 E-value: 6.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 258 LSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKlTKKLRTTEITLESLKQQLVELHH 337
Cdd:pfam07111 61 LSQQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAE-AEGLRAALAGAEMVRKNLEEGSQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 338 SEsLQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQEsicTRLKDHVQQLERNQEAVRLekteLINRLTRSLE 417
Cdd:pfam07111 140 RE-LEEIQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLE---TKRAGEAKQLAEAQKEAEL----LRKQLSKTQE 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 418 DSQKQCAHL--LQSGSVQEVAQLQLQLQQAQKAHVLSESMN-------------KALQEELTELKDEISLYESAAELGVL 482
Cdd:pfam07111 212 ELEAQVTLVesLRKYVGEQVPPEVHSQTWELERQELLDTMQhlqedradlqatvELLQVRVQSLTHMLALQEEELTRKIQ 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 483 PGDSegdLSIELTESCVDLgikKVNWKQSKANRVTQQESpdEDPSKDELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRE 562
Cdd:pfam07111 292 PSDS---LEPEFPKKCRSL---LNRWREKVFALMVQLKA--QDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQD 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 563 CRETMEAFQQSKDGDSgMETKTDTSEKTTKQLWLESSEAINREDILQLKNEVQVLQKQNQELKEAEEKLRSTNQDLCNQM 642
Cdd:pfam07111 364 KAAEVEVERMSAKGLQ-MELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAV 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 643 RQMvqefdHDKQEAVARCERTYQQHHEAMK-AQIRESLLAKHAVEKQHLLEVYEGTQSQLRSDLDKMNKemaavqecylE 721
Cdd:pfam07111 443 RKV-----HTIKGLMARKVALAQLRQESCPpPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQ----------E 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 722 VCREKDGLESTLRKTMEKAQEQKRQLLEAREEYVrKLKLELEEKYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQL 801
Cdd:pfam07111 508 VGRAREQGEAERQQLSEVAQQLEQELQRAQESLA-SVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEV 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 802 EKEWQSKLDDSLaawRKTTSDRGSQTEQVACPAAVSKAEAAAVLAEEQARQVQQE--KELATKEALRKPEVELELKYCEI 879
Cdd:pfam07111 587 ETRLREQLSDTK---RRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEarKEEGQRLARRVQELERDKNLMLA 663
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1907144130 880 IAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVA 925
Cdd:pfam07111 664 TLQQEGLLSRYKQQRLLAVLPSGLDKKSVVSSPRPECSASAPIPAA 709
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
279-1064 |
8.25e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 279 SQQLFQNGKEREMQLEAQIAALEAQVEafrvSEEKLTKKlrtTEITLESLKQQLVELHHSES------------------ 340
Cdd:TIGR00606 208 ELKYLKQYKEKACEIRDQITSKEAQLE----SSREIVKS---YENELDPLKNRLKEIEHNLSkimkldneikalksrkkq 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 341 LQRAREHHESIVASLTQKHEEQVSSLQKNLDATITALQEQESICTRlkdHVQQLERNQEAVRLEKTELINRLTR-SLEDS 419
Cdd:TIGR00606 281 MEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQR---ELEKLNKERRLLNQEKTELLVEQGRlQLQAD 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 420 QKQCAHLLQSGSVQEVAQLQL---------------------QLQQAQKAHVLSESMN------KALQEELTELKDEISL 472
Cdd:TIGR00606 358 RHQEHIRARDSLIQSLATRLEldgfergpfserqiknfhtlvIERQEDEAKTAAQLCAdlqskeRLKQEQADEIRDEKKG 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 473 YESAAELGvlpgdsegdlSIELTESCVDLGIKKVNWKQSKA--NRVTQQESPDEDPSKDELILKLKTQVQRLLTSNSVKR 550
Cdd:TIGR00606 438 LGRTIELK----------KEILEKKQEELKFVIKELQQLEGssDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQ 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 551 HLVSQLQSDLRECRETMEAFQQSKDGDSGMET----KTDTSEKTTKQLWLESSEAINREDILQLKNEVQ-VLQKQNQELK 625
Cdd:TIGR00606 508 NEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMltkdKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEdWLHSKSKEIN 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 626 EAEEKLRSTNQDLCN--QMRQMVQEFDHDKQEAVARCE---------RTYQQHHEAMKAQIRES------LLAKHAVEKQ 688
Cdd:TIGR00606 588 QTRDRLAKLNKELASleQNKNHINNELESKEEQLSSYEdklfdvcgsQDEESDLERLKEEIEKSskqramLAGATAVYSQ 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 689 HLLEVYEGTQS---------QLRSDLDKMNKEMaavQECYLEVCREKDGLESTLRKtMEKAQEQKRQLLEAREEYVRKLK 759
Cdd:TIGR00606 668 FITQLTDENQSccpvcqrvfQTEAELQEFISDL---QSKLRLAPDKLKSTESELKK-KEKRRDEMLGLAPGRQSIIDLKE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 760 LELEE------KYQETLKTERQSWLQEQAAGATQQAEKESRQKLIQQLE--KEWQSKLDDSlaawRKTTSDRGSQTEQVA 831
Cdd:TIGR00606 744 KEIPElrnklqKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTimERFQMELKDV----ERKIAQQAAKLQGSD 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 832 CPAAVSKAEAAAVLAEEQARQVQQEKELATK--EALRKPEVELELKYCEIIAQKVE--TAVQNARSRWIQELPMLAEYKA 907
Cdd:TIGR00606 820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKliQDQQEQIQHLKSKTNELKSEKLQigTNLQRRQQFEEQLVELSTEVQS 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 908 LLRAQQQewAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVHslQKELELKDEEvpvivrAEVAKART 987
Cdd:TIGR00606 900 LIREIKD--AKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK--NIHGYMKDIE------NKIQDGKD 969
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907144130 988 EWNKEKQEEIHKIQEQNEEDyrqflEDHRNKINEVLAAAKEDFVKQKaelllQKETEFQACLDQSRKEWTLQEAQQT 1064
Cdd:TIGR00606 970 DYLKQKETELNTVNAQLEEC-----EKHQEKINEDMRLMRQDIDTQK-----IQERWLQDNLTLRKRENELKEVEEE 1036
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
609-802 |
1.32e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 609 QLKNEVQVLQKQNQElkEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVARcertYQQHHEAMKAQIRES----LLAKHA 684
Cdd:cd16269 98 QLEEKKEEFCKQNEE--ASSKRCQALLQELSAPLEEKISQGSYSVPGGYQL----YLEDREKLVEKYRQVprkgVKAEEV 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 685 VekQHLLEVYEGT-QSQLRSD--LDKMNKEMAAVQECYLEVCREKDGLESTLRKTMEKAQEQKRQLlearEEYVRKLKLE 761
Cdd:cd16269 172 L--QEFLQSKEAEaEAILQADqaLTEKEKEIEAERAKAEAAEQERKLLEEQQRELEQKLEDQERSY----EEHLRQLKEK 245
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907144130 762 LEEKYQETLKTERQ---SWLQEQAAGATQQAEKESR--QKLIQQLE 802
Cdd:cd16269 246 MEEERENLLKEQERaleSKLKEQEALLEEGFKEQAEllQEEIRSLK 291
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
198-417 |
1.81e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 198 AQEVAASDMFEGLQQQFLGANENSAenihiiQLQVLNKAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLR 277
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIE------ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 278 ESQQLFQNGKEREMQLEAQIAALEAQVEAFRVSEEKLTKKLRTTEITLESLKQQLVEL-HHSESLQRAREHHESIVASLT 356
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLrSELEELSEELRELESKRSELR 914
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907144130 357 QKHEE----------QVSSLQKNLDATITALQEQESIctrLKDHVQQLERNQEAVRLEKTELINRLTRSLE 417
Cdd:TIGR02168 915 RELEElreklaqlelRLEGLEVRIDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
229-402 |
1.99e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 229 QLQVLNKAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQveafr 308
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL----- 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 309 vsEEKLTKKLRTTEITLESLKQQLVELhhseslqrarehhesivASLTQKHEEQVSSLQKNLDATITALQEQESICTRLK 388
Cdd:COG4942 166 --RAELEAERAELEALLAELEEERAAL-----------------EALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
170
....*....|....
gi 1907144130 389 DHVQQLERNQEAVR 402
Cdd:COG4942 227 ALIARLEAEAAAAA 240
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
219-637 |
2.01e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 219 ENSAENIHIIQLQVLNKAKERQLDSLVEKLKDSERQvrylshQLLIVQDEKDGLALSLRESQQLFQNGKEREMQL----- 293
Cdd:pfam05483 373 EKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE------ELKKILAEDEKLLDEKKQFEKIAEELKGKEQELifllq 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 294 --EAQIAALEAQVEAFRVSEEKLTKKLRTTEITLESLKQQLVEL-HHSESLQRAREHHESIVASLT---QKHEEQVSSLQ 367
Cdd:pfam05483 447 arEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELtAHCDKLLLENKELTQEASDMTlelKKHQEDIINCK 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 368 KNLDATITALQEQESICTRLKDhvqQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQ---LQLQQ 444
Cdd:pfam05483 527 KQEERMLKQIENLEEKEMNLRD---ELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKcnnLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 445 AQKAHVLSE--SMNKALQEELTELKDEISLYESAAElgvlpgdsegDLSIELTESCVDLGIKKVNWKQSKANRVTQQESP 522
Cdd:pfam05483 604 ENKNKNIEElhQENKALKKKGSAENKQLNAYEIKVN----------KLELELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 523 DEDPSKDELILKLKTQVQRLLTSNSvkRHLVSQLQSDLRECRETMEAFQQSKDGDSGMeTKTDTSEKTTKQLWLESseai 602
Cdd:pfam05483 674 LEEVEKAKAIADEAVKLQKEIDKRC--QHKIAEMVALMEKHKHQYDKIIEERDSELGL-YKNKEQEQSSAKAALEI---- 746
|
410 420 430
....*....|....*....|....*....|....*
gi 1907144130 603 nreDILQLKNEVQVLQKQNQELKEAEEKLRSTNQD 637
Cdd:pfam05483 747 ---ELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
852-1074 |
2.70e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 852 QVQQEKELATKEALRKPEVELEL-KYCEIIAQKVETAVQNARSRwiQELPMLAEYKALLRAQQQEWakQQELAVAHRLSL 930
Cdd:pfam17380 352 RIRQEERKRELERIRQEEIAMEIsRMRELERLQMERQQKNERVR--QELEAARKVKILEEERQRKI--QQQKVEMEQIRA 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 931 ALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKELELKDEEVPVIVRAEVAKARTEwNKEKQEEIHKIQEQN-EEDYR 1009
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRD-RKRAEEQRRKILEKElEERKQ 506
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907144130 1010 QFLEDHRNKinEVLAAAKEDfvKQKAellLQKETEFQACLDQSRKEWTLQEAQQTQVEIRQYEED 1074
Cdd:pfam17380 507 AMIEEERKR--KLLEKEMEE--RQKA---IYEEERRREAEEERRKQQEMEERRRIQEQMRKATEE 564
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
855-1073 |
5.23e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 855 QEKELATKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQQEWAKQQELAVAHRLSL-ALS 933
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLsSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 934 EAKEKWKSElenMKPNVMSVKELEEKVHSLQKELE-LKDEEVPVIVRAEVAKARtewnkeKQEEIHKIQEQNEEDYRQFL 1012
Cdd:TIGR02169 751 QEIENVKSE---LKELEARIEELEEDLHKLEEALNdLEARLSHSRIPEIQAELS------KLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907144130 1013 EDhRNKINEVLAAAKEDFVKQKAELLLQKETEFQAC-LDQSRKEWTLQEAQQTQVEIRQYEE 1073
Cdd:TIGR02169 822 NR-LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIeNLNGKKEELEEELEELEAALRDLES 882
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
738-807 |
5.42e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 5.42e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907144130 738 EKAQEQKRQLLEAREEYVRKLKLELE---EKYQETLKTERQSwLQEQAAGATQQAEKESRQ--KLIQQLEKEWQS 807
Cdd:PRK00409 529 ERELEQKAEEAEALLKEAEKLKEELEekkEKLQEEEDKLLEE-AEKEAQQAIKEAKKEADEiiKELRQLQKGGYA 602
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
231-425 |
6.02e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 231 QVLNKAK---ERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKEREMQLEAQIAALEAQVEAF 307
Cdd:pfam01576 204 QELEKAKrklEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESE 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 308 RVSEEKLTKKLRTTEITLESLKQQLVE-LHHSESLQRAREHHESIVASL-------TQKHEEQVSSLQKNLDATITALQE 379
Cdd:pfam01576 284 RAARNKAEKQRRDLGEELEALKTELEDtLDTTAAQQELRSKREQEVTELkkaleeeTRSHEAQLQEMRQKHTQALEELTE 363
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907144130 380 QESICTRLKdhvQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAH 425
Cdd:pfam01576 364 QLEQAKRNK---ANLEKAKQALESENAELQAEL-RTLQQAKQDSEH 405
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
856-1094 |
6.70e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 856 EKELATKEALRKPEVELELKYCEIIAQKVETAVQNARSRWIQELPMLAEYKALLRAQQqewakqqELAVAHRLSLALSEA 935
Cdd:PLN02939 159 EKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGAT-------EGLCVHSLSKELDVL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 936 KEK---WKSELENMKPNVMSVKELEEKVHSLQKE---LE--LKDEEVPVIV-RAEVAKARTE-----WNKEK--QEEIHK 999
Cdd:PLN02939 232 KEEnmlLKDDIQFLKAELIEVAETEERVFKLEKErslLDasLRELESKFIVaQEDVSKLSPLqydcwWEKVEnlQDLLDR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 1000 IQEQNEE-----DYRQFLEDHRNKINEVLAAAK-EDFVKQKAELLLQKETEFQACLDQSRKEwTLQEAQQTQVEIRQYeE 1073
Cdd:PLN02939 312 ATNQVEKaalvlDQNQDLRDKVDKLEASLKEANvSKFSSYKVELLQQKLKLLEERLQASDHE-IHSYIQLYQESIKEF-Q 389
|
250 260
....*....|....*....|.
gi 1907144130 1074 DTLTVLAYLLKDTQLEYGGDS 1094
Cdd:PLN02939 390 DTLSKLKEESKKRSLEHPADD 410
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
229-800 |
7.00e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 229 QLQVLNKAKERQLDSLVEKLKDSERQVRYLSHQLLIVQDEKDGLALSLRESQQLFQNGKE-REMQLEAQIAALEAQVEAF 307
Cdd:pfam12128 323 ELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkIKEQNNRDIAGIKDKLAKI 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 308 RvseEKLTKKLRTTEITLESLKQQLVElHHSESLQRAREHHESIVASLTQ--------KHEEQVSSLQKNLDATITALQE 379
Cdd:pfam12128 403 R---EARDRQLAVAEDDLQALESELRE-QLEAGKLEFNEEEYRLKSRLGElklrlnqaTATPELLLQLENFDERIERARE 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 380 QESICTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVQevaqlqlqlqqaqkAHVLSESMNKal 459
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQ--------------AGTLLHFLRK-- 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 460 qeELTELKDEISLYESAAELG---VLPGDSEGDLSIELTESCVDLGIKKVnwkqskanrvtqqESPDEDPSKDELilklk 536
Cdd:pfam12128 543 --EAPDWEQSIGKVISPELLHrtdLDPEVWDGSVGGELNLYGVKLDLKRI-------------DVPEWAASEEEL----- 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 537 tqvqrlltsnsvkRHLVSQLQSDLRECRETMEAFQQSKDGDSGMETKTDTSEKTTKQLWLEsseaiNREDILQLKNEVQV 616
Cdd:pfam12128 603 -------------RERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKN-----ARLDLRRLFDEKQS 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 617 LQKQ-NQELKEAEEKLRSTNQDLCNQMRQMvqefDHDKQEAVARCERTYQQHHEAMKAQIRE---SLLAKHAVEKQHLLE 692
Cdd:pfam12128 665 EKDKkNKALAERKDSANERLNSLEAQLKQL----DKKHQAWLEEQKEQKREARTEKQAYWQVvegALDAQLALLKAAIAA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 693 VYEGTQSQLRSDLDKMNKEMAAvqecyLEVCREKDGLESTLRKTMEKAQEQKRQLLEAREEYvrklklelEEKYQETlkt 772
Cdd:pfam12128 741 RRSGAKAELKALETWYKRDLAS-----LGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRY--------FDWYQET--- 804
|
570 580
....*....|....*....|....*...
gi 1907144130 773 erqsWLQEQAAGATQQAEKESRQKLIQQ 800
Cdd:pfam12128 805 ----WLQRRPRLATQLSNIERAISELQQ 828
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
229-979 |
7.78e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 229 QLQVLNKAKERQLDSLVEKLKDSERQvryLSHQLLIVQDEKDGLALSLRESQQLfQNGKEREMQLEAQIAALEAQVEafR 308
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRT---IELKKEILEKKQEELKFVIKELQQL-EGSSDRILELDQELRKAERELS--K 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 309 VSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRAREHHESI----VASLTQKH---EEQVSSLQKNLDATITALQEQE 381
Cdd:TIGR00606 490 AEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTtrtqMEMLTKDKmdkDEQIRKIKSRHSDELTSLLGYF 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 382 SICTRLKD--HVQQLERNQEAVRLEKtelINRLTRSLEDSQKQCAHLLQSGSVQEVAQLQlqlqqaqkaHVLSESMNKAL 459
Cdd:TIGR00606 570 PNKKQLEDwlHSKSKEINQTRDRLAK---LNKELASLEQNKNHINNELESKEEQLSSYED---------KLFDVCGSQDE 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 460 QEELTELKDEISlyESAAELGVLPG-----DSEGDLSIELTESCVDLGIKKVNWKQSKANRVTQQES-----PDEDPSKD 529
Cdd:TIGR00606 638 ESDLERLKEEIE--KSSKQRAMLAGatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSklrlaPDKLKSTE 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 530 ELILKLKTQVQRLLTSNSVKRHLVSQLQSDLRECRETMEAFQQSkdgdsgMETKTDTSEKTTKQLWLESSEAINREDILq 609
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRD------IQRLKNDIEEQETLLGTIMPEEESAKVCL- 788
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 610 lkNEVQVLQKQNQELKEAEEK-------LRSTNQDLC-NQMRQMVQEFDHDKQEAVARCERTYQQHHEAMKAQirESLLA 681
Cdd:TIGR00606 789 --TDVTIMERFQMELKDVERKiaqqaakLQGSDLDRTvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI--QHLKS 864
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 682 KHAVEKQHLLEVYEGTQ--SQLRSDLDKMNKEmaaVQECYLEVCREKDGlESTLRKTMEKAQEQKRQLLEAREEYVRKLK 759
Cdd:TIGR00606 865 KTNELKSEKLQIGTNLQrrQQFEEQLVELSTE---VQSLIREIKDAKEQ-DSPLETFLEKDQQEKEELISSKETSNKKAQ 940
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 760 LELE---EKYQETLKTERQSWLQEQAAGATQQAEKESR-QKLIQQLEKEWQSKlddslaawRKTTSDRGSQTEQVacpaa 835
Cdd:TIGR00606 941 DKVNdikEKVKNIHGYMKDIENKIQDGKDDYLKQKETElNTVNAQLEECEKHQ--------EKINEDMRLMRQDI----- 1007
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907144130 836 vskaeaaavlaeeqARQVQQEKELATKEALRK-----PEVELELK-YCEIIAQKVETAVQNARSRWIQELPMLAEYKALL 909
Cdd:TIGR00606 1008 --------------DTQKIQERWLQDNLTLRKrenelKEVEEELKqHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLA 1073
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907144130 910 RAQQQEWAKQQELAVAHRLSLALSEAKEKWKSELENMKPNVMSVKELEEKVHSLQKEL----ELKDEEVPVIVR 979
Cdd:TIGR00606 1074 LGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAImkfhSMKMEEINKIIR 1147
|
|
| |
