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Conserved domains on  [gi|1907139716|ref|XP_036017893|]
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syntaphilin isoform X1 [Mus musculus]

Protein Classification

syntaphilin domain-containing protein( domain architecture ID 10633823)

syntaphilin domain-containing protein similar to Homo sapiens syntaphilin, a syntaxin-1 clamp that controls SNARE assembly, and syntabulin, a microtubule-associated protein implicated in syntaxin transport in neurons

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Syntaphilin pfam15290
Golgi-localized syntaxin-1-binding clamp; Syntaphilin or Syntabulin is a family of eukaryotic ...
 95-406 3.45e-168

Golgi-localized syntaxin-1-binding clamp; Syntaphilin or Syntabulin is a family of eukaryotic proteins. Syntaphilin binds to syntaxin-1 thereby inhibiting SNARE complex formation by absorbing free syntaxin-1. So it is a syntaxin-1 clamp that controls SNARE assembly.


:

Pssm-ID: 464617 [Multi-domain]  Cd Length: 305  Bit Score: 479.62  E-value: 3.45e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716  95 RTSPPVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQ 174
Cdd:pfam15290   1 NQGSPVNNRDAYGPSSLSSSSNSGSCKGSDSSPTRRRSGRYHSCGDNHGIKPPNPEQYLTPLQQKEVTIRHLKTKLKESE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 175 DRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKL 254
Cdd:pfam15290  81 NRLQDRETEIEELKSQLSRMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMKSSLAEKDKGIQKYFVDINIQNKKL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 255 ETLLHSMEVAQNGVAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVcGDRQPGDPSNTSAEDGADSGYVAADDTLSRTDA 334
Cdd:pfam15290 161 ESLLQSMELAQNGSLRDEGTLEFACDSPAKSLTRSSTYTKLSDQLA-AEENGLELEDQSAEEMADSGLLANDEMANRTDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 335 leassllssgvdcgLEEASLHSSFNLGPRFPASNTYEKLL---CGMEAGVQV-----SCMQERAIQTDFVQYQPDLNTIL 406
Cdd:pfam15290 240 --------------LEEVFMSTAVEAGDLAPFSSTYEKLMgsqKSVEALPSCseekqQMVEEQAIQTDVVPYSPDLDTLL 305
 
Name Accession Description Interval E-value
Syntaphilin pfam15290
Golgi-localized syntaxin-1-binding clamp; Syntaphilin or Syntabulin is a family of eukaryotic ...
 95-406 3.45e-168

Golgi-localized syntaxin-1-binding clamp; Syntaphilin or Syntabulin is a family of eukaryotic proteins. Syntaphilin binds to syntaxin-1 thereby inhibiting SNARE complex formation by absorbing free syntaxin-1. So it is a syntaxin-1 clamp that controls SNARE assembly.


Pssm-ID: 464617 [Multi-domain]  Cd Length: 305  Bit Score: 479.62  E-value: 3.45e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716  95 RTSPPVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQ 174
Cdd:pfam15290   1 NQGSPVNNRDAYGPSSLSSSSNSGSCKGSDSSPTRRRSGRYHSCGDNHGIKPPNPEQYLTPLQQKEVTIRHLKTKLKESE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 175 DRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKL 254
Cdd:pfam15290  81 NRLQDRETEIEELKSQLSRMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMKSSLAEKDKGIQKYFVDINIQNKKL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 255 ETLLHSMEVAQNGVAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVcGDRQPGDPSNTSAEDGADSGYVAADDTLSRTDA 334
Cdd:pfam15290 161 ESLLQSMELAQNGSLRDEGTLEFACDSPAKSLTRSSTYTKLSDQLA-AEENGLELEDQSAEEMADSGLLANDEMANRTDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 335 leassllssgvdcgLEEASLHSSFNLGPRFPASNTYEKLL---CGMEAGVQV-----SCMQERAIQTDFVQYQPDLNTIL 406
Cdd:pfam15290 240 --------------LEEVFMSTAVEAGDLAPFSSTYEKLMgsqKSVEALPSCseekqQMVEEQAIQTDVVPYSPDLDTLL 305
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 156-272 1.92e-07

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 52.23  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 156 LQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLsrmqedwieeechrVEAQLALKEARKEIRQLKQVIDTVKnNLID 235
Cdd:COG1579    12 LQELDSELDRLEHRLKELPAELAELEDELAALEARL--------------EAAKTELEDLEKEIKRLELEIEEVE-ARIK 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1907139716 236 KDKGLQKyfvdiNIQN-KKLETLLHSMEVAQNGVAKEE 272
Cdd:COG1579    77 KYEEQLG-----NVRNnKEYEALQKEIESLKRRISDLE 109
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 156-257 1.58e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 44.63  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 156 LQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQlsrMQEDWIEE--------ECHRVEAQLALKEARKEIRQLKQVID 227
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ---KEQDWNKElkselknqEKKLEEIQNQISQNNKIISQLNEQIS 345

                          90       100       110
                  ....*....|....*....|....*....|
gi 1907139716 228 TVKNNLIDKDKGLQKYFVDINIQNKKLETL 257
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKL 375
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
163-273 2.23e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.28  E-value: 2.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 163 IRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEdwIEEEchrVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQK 242
Cdd:PRK03918  254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKE--LKEK---AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907139716 243 YFVDINIQNKKLETLLHSMEVAQNGVAKEEG 273
Cdd:PRK03918  329 RIKELEEKEERLEELKKKLKELEKRLEELEE 359
 
Name Accession Description Interval E-value
Syntaphilin pfam15290
Golgi-localized syntaxin-1-binding clamp; Syntaphilin or Syntabulin is a family of eukaryotic ...
 95-406 3.45e-168

Golgi-localized syntaxin-1-binding clamp; Syntaphilin or Syntabulin is a family of eukaryotic proteins. Syntaphilin binds to syntaxin-1 thereby inhibiting SNARE complex formation by absorbing free syntaxin-1. So it is a syntaxin-1 clamp that controls SNARE assembly.


Pssm-ID: 464617 [Multi-domain]  Cd Length: 305  Bit Score: 479.62  E-value: 3.45e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716  95 RTSPPVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQ 174
Cdd:pfam15290   1 NQGSPVNNRDAYGPSSLSSSSNSGSCKGSDSSPTRRRSGRYHSCGDNHGIKPPNPEQYLTPLQQKEVTIRHLKTKLKESE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 175 DRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKL 254
Cdd:pfam15290  81 NRLQDRETEIEELKSQLSRMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMKSSLAEKDKGIQKYFVDINIQNKKL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 255 ETLLHSMEVAQNGVAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVcGDRQPGDPSNTSAEDGADSGYVAADDTLSRTDA 334
Cdd:pfam15290 161 ESLLQSMELAQNGSLRDEGTLEFACDSPAKSLTRSSTYTKLSDQLA-AEENGLELEDQSAEEMADSGLLANDEMANRTDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 335 leassllssgvdcgLEEASLHSSFNLGPRFPASNTYEKLL---CGMEAGVQV-----SCMQERAIQTDFVQYQPDLNTIL 406
Cdd:pfam15290 240 --------------LEEVFMSTAVEAGDLAPFSSTYEKLMgsqKSVEALPSCseekqQMVEEQAIQTDVVPYSPDLDTLL 305
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 156-272 1.92e-07

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 52.23  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 156 LQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLsrmqedwieeechrVEAQLALKEARKEIRQLKQVIDTVKnNLID 235
Cdd:COG1579    12 LQELDSELDRLEHRLKELPAELAELEDELAALEARL--------------EAAKTELEDLEKEIKRLELEIEEVE-ARIK 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1907139716 236 KDKGLQKyfvdiNIQN-KKLETLLHSMEVAQNGVAKEE 272
Cdd:COG1579    77 KYEEQLG-----NVRNnKEYEALQKEIESLKRRISDLE 109
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
158-272 4.98e-05

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 45.66  E-value: 4.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 158 QKEvcIRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQE--DWIEEECHRVEAQLA-----LKEARKEIRQLKQVIDTVK 230
Cdd:COG4372    44 QEE--LEQLREELEQAREELEQLEEELEQARSELEQLEEelEELNEQLQAAQAELAqaqeeLESLQEEAEELQEELEELQ 121

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1907139716 231 N---NLIDKDKGLQ----KYFVDINIQNKKLETLLHSMEVAQNGVAKEE 272
Cdd:COG4372   122 KerqDLEQQRKQLEaqiaELQSEIAEREEELKELEEQLESLQEELAALE 170
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 156-257 1.58e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 44.63  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 156 LQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQlsrMQEDWIEE--------ECHRVEAQLALKEARKEIRQLKQVID 227
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ---KEQDWNKElkselknqEKKLEEIQNQISQNNKIISQLNEQIS 345

                          90       100       110
                  ....*....|....*....|....*....|
gi 1907139716 228 TVKNNLIDKDKGLQKYFVDINIQNKKLETL 257
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKL 375
BAR pfam03114
BAR domain; BAR domains are dimerization, lipid binding and curvature sensing modules found in ...
 193-270 1.97e-04

BAR domain; BAR domains are dimerization, lipid binding and curvature sensing modules found in many different protein families. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysin, endophilin, BRAP and Nadrin. BAR domains are also frequently found alongside domains that determine lipid specificity, like pfam00169 and pfam00787 domains in beta centaurins and sorting nexins respectively.


Pssm-ID: 460810 [Multi-domain]  Cd Length: 235  Bit Score: 43.09  E-value: 1.97e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139716 193 RMQEDWieEECHRVEAQLALKEARKEIRQ-LKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGVAK 270
Cdd:pfam03114  80 AGKDLG--EDSSFGKALEDYGEALKRLAQlLEQLDDRVETNFLDPLRNLLKEFKEIQKHRKKLERKRLDYDAAKTRVKK 156
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
163-273 2.23e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.28  E-value: 2.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 163 IRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEdwIEEEchrVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQK 242
Cdd:PRK03918  254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKE--LKEK---AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907139716 243 YFVDINIQNKKLETLLHSMEVAQNGVAKEEG 273
Cdd:PRK03918  329 RIKELEEKEERLEELKKKLKELEKRLEELEE 359
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 157-271 1.59e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.54  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 157 QQKEVCIRHLKARLKDTQDRLQDRDTE-------IDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTV 229
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQEKKLEEIQNQisqnnkiISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY 382

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1907139716 230 KN---NLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGVAKE 271
Cdd:TIGR04523 383 KQeikNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 163-260 2.41e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.58  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 163 IRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEeechrveAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQK 242
Cdd:COG3883    18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNE-------LQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90

                          90       100
                  ....*....|....*....|.
gi 1907139716 243 YFVDINIQ---NKKLETLLHS 260
Cdd:COG3883    91 RARALYRSggsVSYLDVLLGS 111
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
163-270 2.90e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 40.27  E-value: 2.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 163 IRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQedwieEECHRVEAQlaLKEARKEIRQLKQvidtvknNLIDKDKGLQK 242
Cdd:COG4372    26 IAALSEQLRKALFELDKLQEELEQLREELEQAR-----EELEQLEEE--LEQARSELEQLEE-------ELEELNEQLQA 91

                          90       100
                  ....*....|....*....|....*...
gi 1907139716 243 YFVDINIQNKKLETLLHSMEVAQNGVAK 270
Cdd:COG4372    92 AQAELAQAQEELESLQEEAEELQEELEE 119
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 150-265 2.95e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.13  E-value: 2.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 150 EQYLTPLQQKevcIRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTV 229
Cdd:COG4942    26 EAELEQLQQE---IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1907139716 230 KNNLIDKDKGLQKyfvdiNIQNKKLETLLHSMEVAQ 265
Cdd:COG4942   103 KEELAELLRALYR-----LGRQPPLALLLSPEDFLD 133
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 182-257 3.29e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.39  E-value: 3.29e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139716 182 TEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKglqkyfvDINIQNKKLETL 257
Cdd:TIGR04523 218 SQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK-------ELEQNNKKIKEL 286
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 163-257 3.32e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.39  E-value: 3.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 163 IRHLKARLKDTQDRLQDRDTEIDDLKTQLSRM--QEDWIEEECHRVEAQLalKEARKEIRQLKQVIDTVKNNLIDKDKGL 240
Cdd:TIGR04523  77 IKILEQQIKDLNDKLKKNKDKINKLNSDLSKInsEIKNDKEQKNKLEVEL--NKLEKQKKENKKNIDKFLTEIKKKEKEL 154

                          90
                  ....*....|....*..
gi 1907139716 241 QKYFVDINIQNKKLETL 257
Cdd:TIGR04523 155 EKLNNKYNDLKKQKEEL 171
46 PHA02562
endonuclease subunit; Provisional
 166-283 3.49e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 40.38  E-value: 3.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 166 LKARLKDTQDRLQDRDTEIDDLKTQLsRMQEDWIEE-----ECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGL 240
Cdd:PHA02562  172 NKDKIRELNQQIQTLDMKIDHIQQQI-KTYNKNIEEqrkknGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI 250

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1907139716 241 QKYFVDINiqnkKLETLLH--SMEVAQngVAKEEGTGESAGGSPA 283
Cdd:PHA02562  251 EDPSAALN----KLNTAAAkiKSKIEQ--FQKVIKMYEKGGVCPT 289
TPR_MLP1_2 pfam07926
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ...
 163-260 4.75e-03

TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.


Pssm-ID: 462316 [Multi-domain]  Cd Length: 129  Bit Score: 37.62  E-value: 4.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139716 163 IRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEEchrveaqlalKEARKEIRQLKQVIDtvknnlidkdkglqk 242
Cdd:pfam07926  59 LQALREELNELKAEIAELKAEAESAKAELEESEESWEEQK----------KELEKELSELEKRIE--------------- 113

                          90
                  ....*....|....*...
gi 1907139716 243 yfvDINIQNKkletLLHS 260
Cdd:pfam07926 114 ---DLNEQNK----LLHD 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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