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Conserved domains on  [gi|1907129761|ref|XP_036017023|]
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HAUS augmin-like complex subunit 1 isoform X1 [Mus musculus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09039 super family cl32341
peptidoglycan -binding protein;
123-245 1.76e-03

peptidoglycan -binding protein;


The actual alignment was detected with superfamily member PRK09039:

Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 39.56  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907129761 123 KDTSLASFIPAVNDLTSDLFRTKSKSEEMKLELGklekNLTATLVLEKCLREDLKKAELQLSAEKAKVDSRLQnmdflkA 202
Cdd:PRK09039   51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVA----NLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG------E 120

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1907129761 203 KAAEFrfgikAAEEQLSARGMdaslshRSLAALSEKLSELKEQ 245
Cdd:PRK09039  121 LAQEL-----DSEKQVSARAL------AQVELLNQQIAALRRQ 152
 
Name Accession Description Interval E-value
PRK09039 PRK09039
peptidoglycan -binding protein;
123-245 1.76e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 39.56  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907129761 123 KDTSLASFIPAVNDLTSDLFRTKSKSEEMKLELGklekNLTATLVLEKCLREDLKKAELQLSAEKAKVDSRLQnmdflkA 202
Cdd:PRK09039   51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVA----NLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG------E 120

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1907129761 203 KAAEFrfgikAAEEQLSARGMdaslshRSLAALSEKLSELKEQ 245
Cdd:PRK09039  121 LAQEL-----DSEKQVSARAL------AQVELLNQQIAALRRQ 152
 
Name Accession Description Interval E-value
PRK09039 PRK09039
peptidoglycan -binding protein;
123-245 1.76e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 39.56  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907129761 123 KDTSLASFIPAVNDLTSDLFRTKSKSEEMKLELGklekNLTATLVLEKCLREDLKKAELQLSAEKAKVDSRLQnmdflkA 202
Cdd:PRK09039   51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVA----NLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG------E 120

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1907129761 203 KAAEFrfgikAAEEQLSARGMdaslshRSLAALSEKLSELKEQ 245
Cdd:PRK09039  121 LAQEL-----DSEKQVSARAL------AQVELLNQQIAALRRQ 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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