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Conserved domains on  [gi|1907119930|ref|XP_036016050|]
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ubiquitin carboxyl-terminal hydrolase 16 isoform X3 [Mus musculus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 13432443)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
315-513 2.75e-83

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.75e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 315 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 394
Cdd:cd02667   103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 395 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 473
Cdd:cd02667   163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1907119930 474 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02667   240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
25-514 7.23e-19

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 90.33  E-value: 7.23e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  25 DEEVKNKVKD--YEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTM 98
Cdd:COG5560   392 DVVVKKKAKEcwWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLK 471
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  99 EEEDKDSEEEKDDSYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNEreadt 174
Cdd:COG5560   472 IELDASSTIRGLKKLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDNG----- 539
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 175 alageVEVDTdsTHGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPE 245
Cdd:COG5560   540 -----IEVPV--VHLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVR 604
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 246 CPRDfngaflEERTSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFS 319
Cdd:COG5560   605 LLRE------ESSPSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTI 675
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 320 TdecsIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNL 399
Cdd:COG5560   676 T----LQDCLNEFSKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFR 734
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 400 RKVNKHIKFPeILDLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:COG5560   735 DKIDDLVEYP-IDDL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR----------------------- 786
                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1907119930 480 ESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYER 514
Cdd:COG5560   787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
315-513 2.75e-83

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.75e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 315 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 394
Cdd:cd02667   103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 395 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 473
Cdd:cd02667   163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1907119930 474 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02667   240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
303-512 4.10e-34

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 130.64  E-value: 4.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 303 EDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAP 382
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-----------------DAIKQLKISRLP 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 383 PVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKnvAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertasc 462
Cdd:pfam00443 205 PVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYLAEELK--PKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK------ 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907119930 463 hlsnlvlhgdipqdcemESTKGQWFHISDTHVQAV-PITKVLNSQAYLLFY 512
Cdd:pfam00443 277 -----------------AYENNRWYKFDDEKVTEVdEETAVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
25-514 7.23e-19

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 90.33  E-value: 7.23e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  25 DEEVKNKVKD--YEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTM 98
Cdd:COG5560   392 DVVVKKKAKEcwWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLK 471
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  99 EEEDKDSEEEKDDSYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNEreadt 174
Cdd:COG5560   472 IELDASSTIRGLKKLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDNG----- 539
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 175 alageVEVDTdsTHGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPE 245
Cdd:COG5560   540 -----IEVPV--VHLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVR 604
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 246 CPRDfngaflEERTSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFS 319
Cdd:COG5560   605 LLRE------ESSPSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTI 675
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 320 TdecsIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNL 399
Cdd:COG5560   676 T----LQDCLNEFSKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFR 734
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 400 RKVNKHIKFPeILDLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:COG5560   735 DKIDDLVEYP-IDDL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR----------------------- 786
                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1907119930 480 ESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYER 514
Cdd:COG5560   787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
43-92 2.51e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 82.05  E-value: 2.51e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907119930  43 SFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDK 92
Cdd:cd02667    67 TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESC 116
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
367-503 4.24e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 65.66  E-value: 4.24e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  367 HVYTNAKKQMLVSLAPPVLTLHLKRFQqAGF---NLRKVNKHIKFPEILDLAPFCTLKCKNvaEESTRVLYSLYGVVEHS 443
Cdd:COG5077    364 HGLQDAKKGVIFESLPPVLHLQLKRFE-YDFerdMMVKINDRYEFPLEIDLLPFLDRDADK--SENSDAVYVLYGVLVHS 440
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  444 GTMRSGHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVL 503
Cdd:COG5077    441 GDLHEGHYYALLK-----------------------PEKDGRWYKFDDTRVTRATEKEVL 477
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
22-84 3.48e-06

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 48.98  E-value: 3.48e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907119930  22 EKLDEEVKNKVKdyekkKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQS 84
Cdd:pfam00443 100 DGLHEDLNGNHS-----TENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSA 157
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
315-513 2.75e-83

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.75e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 315 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 394
Cdd:cd02667   103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 395 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 473
Cdd:cd02667   163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1907119930 474 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02667   240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-512 1.34e-41

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 150.89  E-value: 1.34e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 324 SIQHCLYQFTRNEKLQDANKLLCEVCSRrqcngpkanikgdrrhvYTNAKKQMLVSLAPPVLTLHLKRFQqaGFNLRKVN 403
Cdd:cd02661   163 SLEDALEQFTKPEQLDGENKYKCERCKK-----------------KVKASKQLTIHRAPNVLTIHLKRFS--NFRGGKIN 223
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 404 KHIKFPEILDLAPFCTlkckNVAEESTRvlYSLYGVVEHSGT-MRSGHYTAYAKertaschlsnlvlhgdipqdcemeST 482
Cdd:cd02661   224 KQISFPETLDLSPYMS----QPNDGPLK--YKLYAVLVHSGFsPHSGHYYCYVK------------------------SS 273
                         170       180       190
                  ....*....|....*....|....*....|
gi 1907119930 483 KGQWFHISDTHVQAVPITKVLNSQAYLLFY 512
Cdd:cd02661   274 NGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
319-513 1.85e-40

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 146.47  E-value: 1.85e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 319 STDECSIQHCLYQFTRNEKLQDANKLLCEvcsrrqcngpkanikgdrRHVYTNAKKQMLVSLAPPVLTLHLKRFQQAG-F 397
Cdd:cd02257    95 GLPQVSLEDCLEKFFKEEILEGDNCYKCE------------------KKKKQEATKRLKIKKLPPVLIIHLKRFSFNEdG 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 398 NLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRVLYSLYGVVEHSGT-MRSGHYTAYAKERtaschlsnlvlhgdipqd 476
Cdd:cd02257   157 TKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTsADSGHYVAYVKDP------------------ 218
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1907119930 477 cemesTKGQWFHISDTHVQAVPITKVL-----NSQAYLLFYE 513
Cdd:cd02257   219 -----SDGKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
319-513 3.84e-35

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 131.26  E-value: 3.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 319 STDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQCngpkanikgdrrhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFN 398
Cdd:cd02674    80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRK-----------------ATKKLTISRLPKVLIIHLKRFSFSRGS 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 399 LRKVNKHIKFP-EILDLAPFCTLKCKNvaeesTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdc 477
Cdd:cd02674   143 TRKLTTPVTFPlNDLDLTPYVDTRSFT-----GPFKYDLYAVVNHYGSLNGGHYTAYCK--------------------- 196
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1907119930 478 emESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02674   197 --NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
303-512 4.10e-34

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 130.64  E-value: 4.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 303 EDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAP 382
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-----------------DAIKQLKISRLP 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 383 PVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKnvAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertasc 462
Cdd:pfam00443 205 PVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYLAEELK--PKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK------ 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907119930 463 hlsnlvlhgdipqdcemESTKGQWFHISDTHVQAV-PITKVLNSQAYLLFY 512
Cdd:pfam00443 277 -----------------AYENNRWYKFDDEKVTEVdEETAVLSSSAYILFY 310
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-512 8.00e-30

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 119.40  E-value: 8.00e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 324 SIQHCLYQFTRNEKLQDANkLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQQAGFNL-RKV 402
Cdd:cd02660   177 TLSDCLDRFTRPEKLGDFA-YKCSGCGSTQ-----------------EATKQLSIKKLPPVLCFQLKRFEHSLNKTsRKI 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 403 NKHIKFPEILDLAPFCTLKCKNVAEES---TRVLYSLYGVVEHSGTMRSGHYTAYAKERtaschlsnlvlhgdipqdcem 479
Cdd:cd02660   239 DTYVQFPLELNMTPYTSSSIGDTQDSNsldPDYTYDLFAVVVHKGTLDTGHYTAYCRQG--------------------- 297
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1907119930 480 estKGQWFHISDTHVQAVPITKVLNSQAYLLFY 512
Cdd:cd02660   298 ---DGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-515 4.67e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 105.80  E-value: 4.67e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 324 SIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQqagFNL---- 399
Cdd:cd02659   152 NLEESLDAYVQGETLEGDNKYFCEKCGKKV-----------------DAEKGVCFKKLPPVLTLQLKRFE---FDFetmm 211
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 400 -RKVNKHIKFPEILDLAPFC--TLKCKNVAEESTRV---LYSLYGVVEHSGTMRSGHYTAYAKERtaschlsnlvlhgdi 473
Cdd:cd02659   212 rIKINDRFEFPLELDMEPYTekGLAKKEGDSEKKDSesyIYELHGVLVHSGDAHGGHYYSYIKDR--------------- 276
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907119930 474 pqdcemesTKGQWFHISDTHV----------------------QAVPITKVLNSQAYLLFYERI 515
Cdd:cd02659   277 --------DDGKWYKFNDDVVtpfdpndaeeecfggeetqktyDSGPRAFKRTTNAYMLFYERK 332
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
311-513 1.11e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 93.97  E-value: 1.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 311 TLANREAFSTDECSIQHCLYQFTRNEKLQDANkllCEVCsrrqcngpkanikgdrrhvytnakkQMLVSLAPPVLTLHLK 390
Cdd:cd02662    84 SLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYK---CDRC-------------------------QTVIVRLPQILCIHLS 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 391 RFQQAGFN-LRKVNKHIKFPEILdlapfctlkcknvaeesTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVL 469
Cdd:cd02662   136 RSVFDGRGtSTKNSCKVSFPERL-----------------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSF 198
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1907119930 470 HGDIPQDCemeSTKGQWFHISDTHVQAVPITKVL-NSQAYLLFYE 513
Cdd:cd02662   199 VRMREGPS---STSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
25-514 7.23e-19

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 90.33  E-value: 7.23e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  25 DEEVKNKVKD--YEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTM 98
Cdd:COG5560   392 DVVVKKKAKEcwWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLK 471
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  99 EEEDKDSEEEKDDSYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNEreadt 174
Cdd:COG5560   472 IELDASSTIRGLKKLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDNG----- 539
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 175 alageVEVDTdsTHGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPE 245
Cdd:COG5560   540 -----IEVPV--VHLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVR 604
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 246 CPRDfngaflEERTSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFS 319
Cdd:COG5560   605 LLRE------ESSPSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTI 675
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 320 TdecsIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNL 399
Cdd:COG5560   676 T----LQDCLNEFSKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFR 734
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 400 RKVNKHIKFPeILDLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:COG5560   735 DKIDDLVEYP-IDDL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR----------------------- 786
                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1907119930 480 ESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYER 514
Cdd:COG5560   787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-513 5.41e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 84.85  E-value: 5.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 323 CSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQ--QAGFNLR 400
Cdd:cd02664   134 PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQ-----------------DAEKEMKVTGAPEYLILTLLRFSydQKTHVRE 196
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 401 KVNKHIKFPEILDL-----------APFCTLKCKNVAEES--TRVLYSLYGVVEHSGT-MRSGHYTAYAKERTASchlSN 466
Cdd:cd02664   197 KIMDNVSINEVLSLpvrveskssesPLEKKEEESGDDGELvtRQVHYRLYAVVVHSGYsSESGHYFTYARDQTDA---DS 273
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907119930 467 LVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQ-------AYLLFYE 513
Cdd:cd02664   274 TGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTsrfpkdtPYILFYE 327
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
43-92 2.51e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 82.05  E-value: 2.51e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907119930  43 SFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDK 92
Cdd:cd02667    67 TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESC 116
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-501 2.19e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 80.16  E-value: 2.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 324 SIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRF---QQAGfNLR 400
Cdd:cd02668   157 TLEECIDEFLKEEQLTGDNQYFCESCNSKT-----------------DATRRIRLTTLPPTLNFQLLRFvfdRKTG-AKK 218
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 401 KVNKHIKFPEILDLAPFCTLKCKNVAEestrvlYSLYGVVEHSGT-MRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:cd02668   219 KLNASISFPEILDMGEYLAESDEGSYV------YELSGVLIHQGVsAYSGHYIAHIK----------------------- 269
                         170       180
                  ....*....|....*....|..
gi 1907119930 480 ESTKGQWFHISDTHVQAVPITK 501
Cdd:cd02668   270 DEQTGEWYKFNDEDVEEMPGKP 291
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
322-513 4.93e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 78.89  E-value: 4.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 322 ECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQQAGfnlrK 401
Cdd:cd02663   146 NTSITSCLRQFSATETLCGRNKFYCDECCSLQ-----------------EAEKRMKIKKLPKILALHLKRFKYDE----Q 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 402 VNKHIK------FPeiLDLAPFCTlkcKNVAEESTRvLYSLYGVVEH--SGTMRsGHYTAYAKertaschlsnlvlhgdi 473
Cdd:cd02663   205 LNRYIKlfyrvvFP--LELRLFNT---TDDAENPDR-LYELVAVVVHigGGPNH-GHYVSIVK----------------- 260
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1907119930 474 pqdcemesTKGQWFHISDTHVQAVPITKVLN--------SQAYLLFYE 513
Cdd:cd02663   261 --------SHGGWLLFDDETVEKIDENAVEEffgdspnqATAYVLFYQ 300
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
281-456 1.93e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 77.63  E-value: 1.93e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 281 DEINIEIPNDSHSAPKVYEVMNEDPETafctlanreafSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkan 360
Cdd:cd02671   149 DFQDISVPVQESELSKSEESSEISPDP-----------KTEMKTLKWAISQFASVERIVGEDKYFCENC----------- 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 361 ikgdrrHVYTNAKKQMLVSLAPPVLTLHLKRFQQAGF------NLRKVNKHIkfpeildLAPFcTLKCKNVAEESTRVLY 434
Cdd:cd02671   207 ------HHYTEAERSLLFDKLPEVITIHLKCFAANGSefdcygGLSKVNTPL-------LTPL-KLSLEEWSTKPKNDVY 272
                         170       180
                  ....*....|....*....|...
gi 1907119930 435 SLYGVVEHSG-TMRSGHYTAYAK 456
Cdd:cd02671   273 RLFAVVMHSGaTISSGHYTAYVR 295
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
367-503 4.24e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 65.66  E-value: 4.24e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  367 HVYTNAKKQMLVSLAPPVLTLHLKRFQqAGF---NLRKVNKHIKFPEILDLAPFCTLKCKNvaEESTRVLYSLYGVVEHS 443
Cdd:COG5077    364 HGLQDAKKGVIFESLPPVLHLQLKRFE-YDFerdMMVKINDRYEFPLEIDLLPFLDRDADK--SENSDAVYVLYGVLVHS 440
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930  444 GTMRSGHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVL 503
Cdd:COG5077    441 GDLHEGHYYALLK-----------------------PEKDGRWYKFDDTRVTRATEKEVL 477
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
360-515 5.51e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 63.28  E-value: 5.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 360 NIKGDRRHVYTNAKKQMlvslaPPVLTLHLKRFQQAGFNlRKVNKHIKfpEILDLaPFCTLKCKNVAEEstrVLYSLYGV 439
Cdd:COG5533   163 ELEVQAKQEYEVSFVKL-----PKILTIQLKRFANLGGN-QKIDTEVD--EKFEL-PVKHDQILNIVKE---TYYDLVGF 230
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907119930 440 VEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcemesTKGQWFHISDTHVQAVPITKVLNS---QAYLLFYERI 515
Cdd:COG5533   231 VLHQGSLEGGHYIAYVK-------------------------KGGKWEKANDSDVTPVSEEEAINEkakNAYLYFYERI 284
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
373-513 4.04e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 58.11  E-value: 4.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 373 KKQMLVSLAPPVLTLHLKRFQ---QAGFNLrKVNKHIKFPEILDLAPFCTLKCknvaeestrvLYSLYGVVEHSG-TMRS 448
Cdd:cd02657   188 TKTSRISRLPKYLTVQFVRFFwkrDIQKKA-KILRKVKFPFELDLYELCTPSG----------YYELVAVITHQGrSADS 256
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907119930 449 GHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVLN-------SQAYLLFYE 513
Cdd:cd02657   257 GHYVAWVR-----------------------RKNDGKWIKFDDDKVSEVTEEDILKlsgggdwHIAYILLYK 305
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
369-513 2.80e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 49.24  E-value: 2.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 369 YTNAKKQMLVSLAPPVLTLHLKRFQ-QAGFNLRKVNKHIKFPEILDLAPfctlkcknvaeestrvlYSLYGVVEHSGT-M 446
Cdd:cd02658   203 KTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELGPGK-----------------YELIAFISHKGTsV 265
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907119930 447 RSGHYTAYAKERTASchlsnlvlhgdipqdcemestKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02658   266 HSGHYVAHIKKEIDG---------------------EGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
22-84 3.48e-06

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 48.98  E-value: 3.48e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907119930  22 EKLDEEVKNKVKdyekkKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQS 84
Cdd:pfam00443 100 DGLHEDLNGNHS-----TENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSA 157
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
22-79 3.96e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 45.76  E-value: 3.96e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907119930  22 EKLDEEVKNKVKDYEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPV 79
Cdd:cd02663    86 ERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDV 143
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
379-513 4.18e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 45.21  E-value: 4.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 379 SLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPF----------CTLKCKNVAEE----STRVLY--SLYGVVEH 442
Cdd:cd02670    96 AKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFvaddpracskCQLECRVCYDDkdfsPTCGKFklSLCSAVCH 175
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907119930 443 SGTMR-SGHYTAYAKERTaschlsnlvlhgDIPQDCEMESTKGQWF---HISDTHVQAVPI---TKVLNSQAYLLFYE 513
Cdd:cd02670   176 RGTSLeTGHYVAFVRYGS------------YSLTETDNEAYNAQWVffdDMADRDGVSNGFnipAARLLEDPYMLFYQ 241
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
22-88 5.82e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 45.06  E-value: 5.82e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907119930  22 EKLDEEVKNKVKDYEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPvLDDQSGKKS 88
Cdd:cd02660   100 DQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLD-IPNKSTPSW 165
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
43-88 1.03e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 44.19  E-value: 1.03e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1907119930  43 SFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKS 88
Cdd:cd02661   122 TLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDA 167
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
363-513 7.15e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 41.92  E-value: 7.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907119930 363 GDRRHVYTNAKKQMLVSLAPPVLTLHLKRFQQAGFNLRKvNKHI-KFPEILDLAPFCTLKCKNVAEESTRvlYSLYGVVE 441
Cdd:cd02669   314 GKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEK-NPTIvNFPIKNLDLSDYVHFDKPSLNLSTK--YNLVANIV 390
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907119930 442 HSGT-MRSGHYtayakertaSCHLSNlvlhgdipqdcemESTKgQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02669   391 HEGTpQEDGTW---------RVQLRH-------------KSTN-KWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
41-86 5.01e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 39.11  E-value: 5.01e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1907119930  41 IPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGK 86
Cdd:cd02671   119 IQELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSK 164
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
22-89 7.34e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 38.78  E-value: 7.34e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907119930  22 EKLDEevknKVKDYEKKKAIPSFvdriFGGELTSTIMCDECRTVSLVHESFLDLSLPVlddqSGKKSI 89
Cdd:cd02659    98 DKLEE----KLKGTGQEGLIKNL----FGGKLVNYIICKECPHESEREEYFLDLQVAV----KGKKNL 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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