|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
882-1399 |
1.05e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 105.79 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 882 QEAKEQGELREQVLQG-QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHRE 960
Cdd:COG1196 216 RELKEELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 961 QVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALR 1040
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1041 AENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRiREGEI 1120
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE-EEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1121 QAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAqreeeilmL 1200
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA--------V 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1201 REASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERE 1280
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1281 SEQQRLQEELVLSRQALEEQQ-SGGPHSTSRADQGPKVGQGSQSGEVETEPSPGVEEKERLTQRLERLQQAVAELEVDRS 1359
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1907135542 1360 KLQCHNAQLRTALEQVERERRKLKRDSVRASRAGSLEARE 1399
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
672-1203 |
9.62e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.71 E-value: 9.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 672 ELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKG 751
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 752 QELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKE 831
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 832 VEcQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgELREQVLQGQLEEAQRDLAQRDH 911
Cdd:COG1196 396 AE-LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE-EAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 912 ELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGeLEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESR 991
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 992 EHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAAL 1071
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1072 QEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEK 1151
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1907135542 1152 AGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREA 1203
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
828-1385 |
1.40e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.32 E-value: 1.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 828 KEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLA 907
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 908 QRDHELETLRQEKQQTQDQEESMKlktsALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLR 987
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELA----ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 988 AESREHEKAVLALQQRCAEQAQEHEAEARTLQDswlqAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKA 1067
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1068 QAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQ----QELCQKKE 1143
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1144 ELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLT-VAQREEEILMLREASSPRHRALPAEKPALQPLP 1222
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDkIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1223 AQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQS 1302
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1303 GGPHSTSRADQGPKVGQGSQSGEVETEPSpgVEEKERLTQRLERLQQAVAELEVDRSKLQCHNAQLRTALEQVERERRKL 1382
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEE--EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
...
gi 1907135542 1383 KRD 1385
Cdd:COG1196 773 ERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
775-1355 |
4.57e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.31 E-value: 4.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 775 LEEDLEQIKHSLRERS-QELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQL 853
Cdd:COG1196 218 LKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 854 QGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQvlqgQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLK 933
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE----ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 934 TSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEA 1013
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1014 EARTLQdswlQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQE-KEQSLLEQAELSHTLEAST 1092
Cdd:COG1196 454 LEEEEE----ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1093 AALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHL--QQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQ 1170
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1171 ERQEETRRLLESLKELQLTVAQREEEILMLREASSpRHRALPAEKPALQPLPA---QQELERLQTALRQTEAREIEWREK 1247
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG-RLREVTLEGEGGSAGGSltgGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1248 AQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQsggphstsradqgpkvGQGSQSGEVE 1327
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL----------------EEEELLEEEA 752
|
570 580
....*....|....*....|....*...
gi 1907135542 1328 TEPSPGVEEKERLTQRLERLQQAVAELE 1355
Cdd:COG1196 753 LEELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
349-1151 |
1.69e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 1.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 349 ARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAEL 428
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 429 QKMEAQNDRELLQASKEKLSAQVEHLQAcvaeaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVA 508
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEE----------KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 509 QGKALQENLALLAQTLSNREREVETLQAEVQELekQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPM 588
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERL--QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 589 AVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLE----------QKAQVIESQRGQIQDL---KKQLGTLECLALE 655
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallKNQSGLSGILGVLSELisvDEGYEAAIEAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 656 LEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEeRSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDE 735
Cdd:TIGR02168 545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSI-KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 736 LQKQQEQLAQALERKGQELvlQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspskgqr 815
Cdd:TIGR02168 624 GVLVVDDLDNALELAKKLR--PGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK--------- 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 816 gslehlkliLRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHL-QEAKEQGELREQ- 893
Cdd:TIGR02168 693 ---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIaQLSKELTELEAEi 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 894 -VLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVE 972
Cdd:TIGR02168 764 eELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 973 GRQVRALEEVLGDLRAESREHEKAVLALQqrcaEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEA 1052
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1053 AVSQAEALQEALSKAQAALQEKEQSLLEQAELS-HTLEASTAALQATLDTCQASARQLEEALrIREGEIQAQALQHHEVT 1131
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTlEEAEALENKIEDDEEEARRRLKRLENKI-KELGPVNLAAIEEYEEL 998
|
810 820
....*....|....*....|
gi 1907135542 1132 QHLQQELCQKKEELRQLLEK 1151
Cdd:TIGR02168 999 KERYDFLTAQKEDLTEAKET 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
381-1150 |
9.14e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 9.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 381 LQDLQRQLSQSQEEKS-KWEGRQNSLESELRDLHEtaasLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAcva 459
Cdd:TIGR02168 202 LKSLERQAEKAERYKElKAELRELELALLVLRLEE----LREELEELQEELKEAEEELEELTAELQELEEKLEELRL--- 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 460 eaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQ 539
Cdd:TIGR02168 275 -------EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 540 ELEKQREMQKAALEllsldlkkrsREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENdrEAQRSVLE 619
Cdd:TIGR02168 348 ELKEELESLEAELE----------ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA--RLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 620 HQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKmitELEGQREMQRVALTHLTLDLEERSQELQ 699
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE---ELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 700 AQSSQLHELENHSTHLAKELQERDQeVTSQRQQIDELQKQQEQLAQALERKGQELVL---------QKERIQVLEDQRTL 770
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQSG-LSGILGVLSELISVDEGYEAAIEAALGGRLQavvvenlnaAKKAIAFLKQNELG 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 771 QTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQR--GSLEHLKLILRDKEKEVECQ-----QERIQELQ 843
Cdd:TIGR02168 572 RVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalSYLLGGVLVVDDLDNALELAkklrpGYRIVTLD 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 844 GHM-----------GQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQV---LQGQLEEAQRDLAQR 909
Cdd:TIGR02168 652 GDLvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEleqLRKELEELSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 910 DHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAE 989
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 990 SREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAqATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQA 1069
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQI-EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1070 ALQEKEQSL-LEQAELSHTLEASTAALQAtLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQL 1148
Cdd:TIGR02168 891 LLRSELEELsEELRELESKRSELRRELEE-LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
..
gi 1907135542 1149 LE 1150
Cdd:TIGR02168 970 AR 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
473-1234 |
5.89e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.42 E-value: 5.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 473 EDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLsnrEREVETLQAEVQELEKQREMQKAAL 552
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL---QKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 553 ELLSLDLKKRSREVDLQQEQiqeleqcrsvLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVI 632
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESK----------LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 633 ESQRGQIQDLKKQLgtleclaleleeshhkvESQQKMITELEGQREMQRVALTHLTLDLEERSQELQaqSSQLHELENHS 712
Cdd:TIGR02168 382 ETLRSKVAQLELQI-----------------ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 713 THLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKiLEEDLEQIKHSLRERSQE 792
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 793 LASQWQLVHERADDGKSPSKGQRGSLEHLklILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQ 872
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEAALGGRLQAV--VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEG 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 873 ETATLQQHLQEAKEQGELREQVLQG-----QLEEAQRDLAQRDHEL-------ETLRQEKQQTQ--DQEESMKLKTSALQ 938
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKALSYLLGGvlvvdDLDNALELAKKLRPGYrivtldgDLVRPGGVITGgsAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 939 AALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTL 1018
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1019 QDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQAT 1098
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1099 LDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRR 1178
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907135542 1179 LLESLKELQLTVAQREEEILMLREASSPRHRALPAEKPALQPL------PAQQELERLQTAL 1234
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKieddeeEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
333-976 |
6.64e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 6.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 333 EAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDL 412
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 413 HETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAcvaEAQAQADAAAVLEEDLRTARSALKLKNEELESE 492
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 493 RERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALEllsldlkkrsrevdlqqeq 572
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE------------------- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 573 iqeleqcrsvlehlpmAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECL 652
Cdd:COG1196 446 ----------------EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 653 ALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHElenhstHLAKELQERDQEVtsQRQQ 732
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE------YLKAAKAGRATFL--PLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 733 IDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSK 812
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 813 GQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELRE 892
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 893 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESM-KLKTSALQ--AALEQAHATLKERQGELEEHREQVRRLQEEL 969
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNLLAIEeyEELEERYDFLSEQREDLEEARETLEEAIEEI 821
|
....*..
gi 1907135542 970 EVEGRQV 976
Cdd:COG1196 822 DRETRER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-641 |
7.66e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 7.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1 MEAIRAQREEERSQADSALYQMQLET-EKERVSLLETLLRTQKELADASQQLERLRQDMKIQKlKEQETTGMLQAQLQET 79
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEElRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQ 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 80 QQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVE 159
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 160 KEKRLLILQEADSVRQQELSSLRQDIQEAQegQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASlw 239
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA-- 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 240 aqEAKATQLQLQLRSTESQLE----------ALVAEQQPENQAQAQLASLCSV-------LQQALGS------------- 289
Cdd:TIGR02168 481 --ERELAQLQARLDSLERLQEnlegfsegvkALLKNQSGLSGILGVLSELISVdegyeaaIEAALGGrlqavvvenlnaa 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 290 --ACESRPELRGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALS--------PEAVALALQKLHQDVWKARQARDDLRDQ 359
Cdd:TIGR02168 559 kkAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvkfDPKLRKALSYLLGGVLVVDDLDNALELA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 360 VQK-------------------LVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQ 420
Cdd:TIGR02168 639 KKLrpgyrivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 421 SRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESE----RERA 496
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQieqlKEEL 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 497 QALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQEL 576
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907135542 577 EQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQD 641
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-546 |
1.12e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 2 EAIRAQREEERSQADSALYQMQLETEKERVSLLETLL-RTQKELADASQQLERLRQDMKIQKLKEQettgmlqaQLQETQ 80
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELeEAQAEEYELLAELARLEQDIARLEERRR--------ELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 81 QELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEK 160
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 161 EKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADfVAREAQLLEELEASRVAEQQLRASLWA 240
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE-EAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 241 QEAKATQLQLQLRSTESQLEALVAEQQPENQA--QAQLASLCSVLQQALGSACESRPELRGGGDSAPTLWG-PDPDQNGA 317
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 318 SRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSK 397
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 398 WEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAcvaeaqaqADAAAVLEEDLRT 477
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE--------EALLAEEEEEREL 709
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907135542 478 ARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSnREREVETLQAEVQELEKQRE 546
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP-EPPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
514-1354 |
4.27e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 4.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 514 QENLALLAQTLSNREREVETLQAEVQELEKQREMQK----AALELLSLDLKKRSREVDLQQEQIQELeqcRSVLEHLPMA 589
Cdd:TIGR02168 185 RENLDRLEDILNELERQLKSLERQAEKAERYKELKAelreLELALLVLRLEELREELEELQEELKEA---EEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 590 VQEREQKLSVQRDQIRELEND-REAQRSVLEHQLL--DLEQKAQVIESQRGQIQDLKKQLGTLECLALEleeshhKVESQ 666
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEiEELQKELYALANEisRLEQQKQILRERLANLERQLEELEAQLEELES------KLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 667 QKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQA 746
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 747 LERKGQELVLQKERIQVLE----DQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLK 822
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAElkelQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 823 LILRDKEKEVECQQERIQE---LQGHMGQLEQQL-------QGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGelRE 892
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNqsgLSGILGVLSELIsvdegyeAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELG--RV 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 893 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAH-----ATLKERQGELEEHREQVRRLQE 967
Cdd:TIGR02168 574 TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddlDNALELAKKLRPGYRIVTLDGD 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 968 ELEVEGRQVRALEE---VLGDLRAESREHEKAVLALQQRCAE---QAQEHEAEARTLQDSWLQAQATLTEQEQELAALRA 1041
Cdd:TIGR02168 654 LVRPGGVITGGSAKtnsSILERRREIEELEEKIEELEEKIAElekALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1042 ENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQ 1121
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1122 AQALQHHEVTQHLQQELcQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLES-LKELQLTVAQREEEILML 1200
Cdd:TIGR02168 814 LLNEEAANLRERLESLE-RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNERASLEEALALL 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1201 REassprhralpaekpalqplpaqqELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQeitmflqasvLERE 1280
Cdd:TIGR02168 893 RS-----------------------ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE----------VRID 939
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907135542 1281 SEQQRLQEELVLSRQaleeqqsggphstsradqgpkvgqgsqsgEVETEPSPGVEEKERLTQRLERLQQAVAEL 1354
Cdd:TIGR02168 940 NLQERLSEEYSLTLE-----------------------------EAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
29-613 |
1.90e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 29 ERVSLLETLLRTQ-KELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQ 107
Cdd:COG1196 189 ERLEDILGELERQlEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 108 VEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQE 187
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 188 AQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQ----------LQLRSTES 257
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEallerlerleEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 258 QLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALSPEAVAL 337
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 338 ALQKLHQDVWKARQARD-DLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETA 416
Cdd:COG1196 509 GVKAALLLAGLRGLAGAvAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 417 ASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAcVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERA 496
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV-AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 497 QALQEQGELKVAQGKALQENLAllaqtlSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQEL 576
Cdd:COG1196 668 RELLAALLEAEAELEELAERLA------EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590
....*....|....*....|....*....|....*..
gi 1907135542 577 EQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREA 613
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
662-1383 |
5.01e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 5.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 662 KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQE 741
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 742 QLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKhSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHL 821
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 822 KLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHRE-QETATLQQHLQEAKEQGELREQVLQGQLE 900
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 901 EAQRDLAQRDHELETLRQEKQQTQDQEEsmklktsalqaALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALE 980
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQE-----------NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 981 EVLGdlraesrEHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTeqeqelAALRAENQYSRRQEEAAVSQAEAL 1060
Cdd:TIGR02168 541 AALG-------GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKG------TEIQGNDREILKNIEGFLGVAKDL 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1061 QEALSKAQAALQ---------EKEQSLLEQAELSH------TLEASTAALQATL----DTCQASARQLEEALRIREGEIQ 1121
Cdd:TIGR02168 608 VKFDPKLRKALSyllggvlvvDDLDNALELAKKLRpgyrivTLDGDLVRPGGVItggsAKTNSSILERRREIEELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1122 AQALQHHEVTQHLQ---QELCQKKEELRQLL-EKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEI 1197
Cdd:TIGR02168 688 ELEEKIAELEKALAelrKELEELEEELEQLRkELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1198 LMLREASSPRHRALpAEKPALQplpaqQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVL 1277
Cdd:TIGR02168 768 ERLEEAEEELAEAE-AEIEELE-----AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1278 ERESEQQRLQEELVLSRQALEEQQSGGPHSTSRADQGPKVGQGSQsgevetepspgvEEKERLTQRLERLQQAVAELEVD 1357
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE------------EALALLRSELEELSEELRELESK 909
|
730 740
....*....|....*....|....*.
gi 1907135542 1358 RSKLQCHNAQLRTALEQVERERRKLK 1383
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLE 935
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
129-1002 |
9.21e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 9.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 129 IEEKVKVAQECSRIQKEL-EKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELgvqvELLRQEVK 207
Cdd:TIGR02168 205 LERQAEKAERYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL----RLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 208 EKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQAL 287
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 288 GSACESRPELRGGgdsaptlwgpdpdqngasrlfkrwslptalsPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRL 367
Cdd:TIGR02168 361 EELEAELEELESR-------------------------------LEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 368 TDTEAQKSQVHSELQDLQRQLSQSQEEKSkwEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKL 447
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAELKEL--QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 448 SAQVEHLQACVAEAqaqadaaavleEDLRTARSALKLKNEELESERERAQALQE-QGELKVAQGKALQENLALLAqtlsn 526
Cdd:TIGR02168 488 QARLDSLERLQENL-----------EGFSEGVKALLKNQSGLSGILGVLSELISvDEGYEAAIEAALGGRLQAVV----- 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 527 rereVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRE 606
Cdd:TIGR02168 552 ----VENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 607 LENDREA--QRSVLEHQLLDL-----------------EQKAQVIESQRGQIQDLKKQLGTLEClaleleeshhKVESQQ 667
Cdd:TIGR02168 628 VDDLDNAleLAKKLRPGYRIVtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEE----------KIAELE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 668 KMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQAL 747
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 748 ERKGQELVLQKERIQVLEDQRTLQTKILEEdLEQIKHSLRERSQELASQWQLVHERADDgkspskgQRGSLEHLKLILRD 827
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDE-LRAELTLLNEEAANLRERLESLERRIAA-------TERRLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 828 KEKEVECQQERIQELQGHMGQLEQQLQGLhrkvgetslllthrEQETATLQQHLQEAKEQGELREQVLQ---GQLEEAQR 904
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEAL--------------LNERASLEEALALLRSELEELSEELReleSKRSELRR 915
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 905 DLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKE-RQGELEEHREQVRRLQEELEVEGR-------QV 976
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENkIEDDEEEARRRLKRLENKIKELGPvnlaaieEY 995
|
890 900
....*....|....*....|....*.
gi 1907135542 977 RALEEVLGDLRAESREHEKAVLALQQ 1002
Cdd:TIGR02168 996 EELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-802 |
2.44e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 40 TQKELADASQQLERLrQDMkIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLD-----LQKQVEDLMSQ 114
Cdd:TIGR02168 177 TERKLERTRENLDRL-EDI-LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELReeleeLQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 115 LVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRE 194
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 195 LGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRAS---LWAQEAKATQLQLQLRSTESQLEALVAEQQPENQ 271
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELeeqLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 272 AQAQLASLCSVLQQALGSACESRPELRGGGdsaptlwgpdpdqngasrlFKRWSLPTALSPEAVALALQKLHQDVWKARQ 351
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEE-------------------LEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 352 ARDDLRDQVQKLVQRLTDTEAQKSQvHSELQDLQRQLSQSQEEKSKWEGR-------------------QNSLESELRDL 412
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQEN-LEGFSEGVKALLKNQSGLSGILGVlselisvdegyeaaieaalGGRLQAVVVEN 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 413 HETAASLQSRLRQAELQK-----MEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLE---------EDLRTA 478
Cdd:TIGR02168 555 LNAAKKAIAFLKQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvDDLDNA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 479 rsalklkNEELESERERAQALQEQGEL----KVAQGKALQENLALLAQT--LSNREREVETLQAEVQELEKQREMQKAAL 552
Cdd:TIGR02168 635 -------LELAKKLRPGYRIVTLDGDLvrpgGVITGGSAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 553 ELLSLDLKKRSREVDLQQEQIQELeqcRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVI 632
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISAL---RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 633 ESQRGQIQDLKKQLGTLECLALELEESHH----KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHEL 708
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTllneEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 709 ENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELvlqKERIQVLEDQRTLQTKIlEEDLEQIKHSLRE 788
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR---SELRRELEELREKLAQL-ELRLEGLEVRIDN 940
|
810
....*....|....
gi 1907135542 789 RSQELASQWQLVHE 802
Cdd:TIGR02168 941 LQERLSEEYSLTLE 954
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
584-1383 |
2.76e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.07 E-value: 2.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 584 EHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLG-TLECLALELEESHHK 662
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESqSQEDLRNQLQNTVHE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 663 VESQQKMITELEGQREMQRVALTHLTLDLEERSQEL--------QAQSSQLHELENHST--------HLAKELQERDQEV 726
Cdd:pfam15921 154 LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIrsilvdfeEASGKKIYEHDSMSTmhfrslgsAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 727 TSQRQQIDELQKQQEQLAQALERKGQELVLQ-KERIQVLEDQRTLQTKILEEDleqiKHSLRERSQELASQWQLVHERAD 805
Cdd:pfam15921 234 SYLKGRIFPVEDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEK----ASSARSQANSIQSQLEIIQEQAR 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 806 DGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQElqghmgQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAK 885
Cdd:pfam15921 310 NQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIE------ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 886 EQGELREQVLQGQLEEAQR-------DLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQ------ 952
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRlwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNeslekv 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 953 ----GELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVlalqqrcaeqaqeheaEARTLQDSWLQAQAT 1028
Cdd:pfam15921 464 ssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI----------------EATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1029 LteQEQELAALRAENQYSRRQEeaavSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALqatldtcQASARQ 1108
Cdd:pfam15921 528 L--KLQELQHLKNEGDHLRNVQ----TECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAM-------QVEKAQ 594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1109 LEEALRIREGEIQAQALQHHEVTQHLqQELCQKKEELRqlLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQl 1188
Cdd:pfam15921 595 LEKEINDRRLELQEFKILKDKKDAKI-RELEARVSDLE--LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN- 670
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1189 tVAQREEEILMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEI 1268
Cdd:pfam15921 671 -SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1269 TMFLQASVLERESEQQRLQEELVLSRQALEeqqsggphstsradqgpkvgqgsqsgEVETEPSPGVEEKERLTQRLERLQ 1348
Cdd:pfam15921 750 IQFLEEAMTNANKEKHFLKEEKNKLSQELS--------------------------TVATEKNKMAGELEVLRSQERRLK 803
|
810 820 830
....*....|....*....|....*....|....*
gi 1907135542 1349 QAVAELEVDRSKLQCHNAQLRTALEQVERERRKLK 1383
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
837-1042 |
3.57e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 71.48 E-value: 3.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 837 ERIQELQGHMGQLEqqlqGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETL 916
Cdd:COG4913 225 EAADALVEHFDDLE----RAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 917 RQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGE-LEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEK 995
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1907135542 996 AVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAE 1042
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
474-992 |
5.58e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.84 E-value: 5.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 474 DLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQ-------TLSNREREVETLQAEVQELEKQRE 546
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAeiedlreTIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 547 MQKAALE--LLSLDLKKRSREV--DLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQL 622
Cdd:PRK02224 290 ELEEERDdlLAEAGLDDADAEAveARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 623 LDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITE----LEGQREMQRVALTHLTLDLEERSQEL 698
Cdd:PRK02224 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREerdeLREREAELEATLRTARERVEEAEALL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 699 QAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERkGQELVLQKERIQVLEDQRTLQTKILEED 778
Cdd:PRK02224 450 EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 779 LEQIKH------SLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVEcQQERIQELQGHMGQLEQQ 852
Cdd:PRK02224 529 RETIEEkreraeELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 853 LQGLHRKVGETSLLLTHReqetatlQQHLQEAKEQ-GELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMK 931
Cdd:PRK02224 608 IERLREKREALAELNDER-------RERLAEKRERkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907135542 932 LKTSALQAALEQAhATLKERQGELEEHREQVRRLQEElevegrqVRALEEVLGDLRAESRE 992
Cdd:PRK02224 681 AEIGAVENELEEL-EELRERREALENRVEALEALYDE-------AEELESMYGDLRAELRQ 733
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
357-925 |
6.90e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.45 E-value: 6.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 357 RDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRqaelqkmEAQND 436
Cdd:PRK02224 229 REQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD-------DLLAE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 437 RELLQASKEKLSAQVEHLQAcvaeaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGelkvaqgKALQEN 516
Cdd:PRK02224 302 AGLDDADAEAVEARREELED----------RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA-------EELREE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 517 LALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQqeqiqeleqcRSVLEHLPMAVQEREQK 596
Cdd:PRK02224 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL----------REERDELREREAELEAT 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 597 LSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQ 676
Cdd:PRK02224 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 677 REmQRVALTHLtldLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQkqqeQLAQALERKGQELvl 756
Cdd:PRK02224 515 EE-RREDLEEL---IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR----EEVAELNSKLAEL-- 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 757 qKERIQVLEDQRTLQTKIleEDLEQIKHSLRERSQELASQWQLVHERADDGKSpskgqrgslehlklilRDKEKEVECQQ 836
Cdd:PRK02224 585 -KERIESLERIRTLLAAI--ADAEDEIERLREKREALAELNDERRERLAEKRE----------------RKRELEAEFDE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 837 ERIQELQGHMGQLEQQLQGLHRKvgetsllLTHREQETATLQQHLQEAKEQGELREqvlqgQLEEAQRDLAQRDHELETL 916
Cdd:PRK02224 646 ARIEEAREDKERAEEYLEQVEEK-------LDELREERDDLQAEIGAVENELEELE-----ELRERREALENRVEALEAL 713
|
....*....
gi 1907135542 917 RQEKQQTQD 925
Cdd:PRK02224 714 YDEAEELES 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
363-1145 |
2.15e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 2.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 363 LVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHEtaaslqsrlrqaelqKMEAQNDRELLQA 442
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK---------------KIKDLGEEEQLRV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 443 SKE--KLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQgelkvaqgkalqenlalL 520
Cdd:TIGR02169 293 KEKigELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK-----------------L 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 521 AQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQcrsVLEHLPMAVQEREQKLSVQ 600
Cdd:TIGR02169 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE---ELQRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 601 RDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQ 680
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 681 RvalthltLDLEERSQELQAQSSQLHEL-ENHSTHLAKELQERDQEVTSQRqqiDELQKQQEQLAQAlERKGQELVLQKE 759
Cdd:TIGR02169 513 E-------EVLKASIQGVHGTVAQLGSVgERYATAIEVAAGNRLNNVVVED---DAVAKEAIELLKR-RKAGRATFLPLN 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 760 RIQvleDQRTLQTKILEEDLEQIKHSLRERSQELAS------QWQLVHERADDGKSPSKGQR-----------------G 816
Cdd:TIGR02169 582 KMR---DERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfGDTLVVEDIEAARRLMGKYRmvtlegelfeksgamtgG 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 817 SLEHLKLILRDKEKEVECQQ--ERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQV 894
Cdd:TIGR02169 659 SRAPRGGILFSRSEPAELQRlrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE----EEK 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 895 LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQ-----AHATLKERQGELEEHREQVRRLQEEL 969
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 970 EVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHE---AEARTLQDSWLQAQATLTEQEQELAAL-----RA 1041
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEnlnGKKEELEEELEELEAALRDLESRLGDLkkerdEL 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1042 ENQYS--RRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALqATLDTCQASARQLEEALRiREGE 1119
Cdd:TIGR02169 895 EAQLRelERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE-LSLEDVQAELQRVEEEIR-ALEP 972
|
810 820
....*....|....*....|....*.
gi 1907135542 1120 IQAQALQHHEVTQHLQQELCQKKEEL 1145
Cdd:TIGR02169 973 VNMLAIQEYEEVLKRLDELKEKRAKL 998
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
25-646 |
4.26e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 4.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 25 ETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDL 104
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 105 QKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQD 184
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 185 IQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLeELEASRvaeQQLRASLWAQEAKATQLQLQLRSTESQLEALVA 264
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEK---EDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 265 EQqpeNQAQAQLASLCSVLQQALGSACESRPELRGG-------GDSAPTLWG---------------------------- 309
Cdd:TIGR02169 477 EY---DRVEKELSKLQRELAEAEAQARASEERVRGGraveevlKASIQGVHGtvaqlgsvgeryataievaagnrlnnvv 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 310 --PDPDQNGASRLFKR-----------------WSLPTALSPE------------------AVALALQK--LHQDVWKAR 350
Cdd:TIGR02169 554 veDDAVAKEAIELLKRrkagratflplnkmrdeRRDLSILSEDgvigfavdlvefdpkyepAFKYVFGDtlVVEDIEAAR 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 351 QARDDLR-------------------DQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRD 411
Cdd:TIGR02169 634 RLMGKYRmvtlegelfeksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 412 LHETAASLQSRLRQAElqkMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSAL-----KLKN 486
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLE---QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSH 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 487 EELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREV 566
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 567 dlqQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELendrEAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQL 646
Cdd:TIGR02169 871 ---EELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL----EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
865-1300 |
4.36e-10 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 64.97 E-value: 4.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 865 LLLTHREQETATLQQHLQEAKEQGELREQVlqGQLEEAQRDLAQ-----RDHEleTLRQEKQQTQDQEESMKLKTSALQA 939
Cdd:COG3096 286 RALELRRELFGARRQLAEEQYRLVEMAREL--EELSARESDLEQdyqaaSDHL--NLVQTALRQQEKIERYQEDLEELTE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 940 ALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAEsrehekavlALQQRCAEQAQEheaeartlq 1019
Cdd:COG3096 362 RLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTR---------AIQYQQAVQALE--------- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1020 dswlQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATl 1099
Cdd:COG3096 424 ----KARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTAR- 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1100 dtcqasarqleEALRiREGEIQAQALQHHEVTQHLQqelcqkkeELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRL 1179
Cdd:COG3096 499 -----------ELLR-RYRSQQALAQRLQQLRAQLA--------ELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEEL 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1180 LESLKelqltvAQREEEILMLREASSPRHRAlpaekpalqplpaQQELERLQTALRQTEAREIEWREKAQDLALSLAQSK 1259
Cdd:COG3096 559 LAELE------AQLEELEEQAAEAVEQRSEL-------------RQQLEQLRARIKELAARAPAWLAAQDALERLREQSG 619
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1907135542 1260 ASISSLQEITMFLQaSVLERESEQQRLQEELVLSRQALEEQ 1300
Cdd:COG3096 620 EALADSQEVTAAMQ-QLLEREREATVERDELAARKQALESQ 659
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
954-1148 |
7.57e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 7.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 954 ELEEHREQVRRLQEELEVEGRQVRALEEVLGD------LRAESREHEKAVLALQQRCAEQAQEH-EAEARTLQDSWLQAQ 1026
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELaeryaaARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1027 ATLTEQEQELAALRAE-NQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQAS 1105
Cdd:COG4913 309 AELERLEARLDALREElDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907135542 1106 ARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQL 1148
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
898-1202 |
1.45e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 898 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKlKTSALQAALEQAHATL-----KERQGELEEHREQVRRLQEELEVE 972
Cdd:TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELALlvlrlEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 973 GRQVRALEEVLGDLRAESREHEKAVLALQQRcaeqAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEA 1052
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKE----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1053 AVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQ 1132
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1133 HLQQELCQKKEELRQLLEKAGARRSQEngIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLRE 1202
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
898-1124 |
2.15e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 2.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 898 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVR 977
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 978 ALEEVLGDLRAE---SREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAV 1054
Cdd:COG4942 101 AQKEELAELLRAlyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1055 SQAEALQEALSKAQAalqekeqsllEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQA 1124
Cdd:COG4942 181 AELEEERAALEALKA----------ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
339-1072 |
2.62e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 339 LQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLhetaas 418
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL------ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 419 lqsrlrQAELQKMEAQNdrellQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQA 498
Cdd:TIGR02169 370 ------RAELEEVDKEF-----AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 499 LQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKqrEMQKAALELLSLDLKKR---SREVDLQQEQIQE 575
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK--ELSKLQRELAEAEAQARaseERVRGGRAVEEVL 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 576 LEQCRSVLEHLPMAVQEREQKLSV------QRDQIRELENDREAQRSVlehQLLDLEQKAQVIESQRGQIQDLKKQLGtL 649
Cdd:TIGR02169 517 KASIQGVHGTVAQLGSVGERYATAievaagNRLNNVVVEDDAVAKEAI---ELLKRRKAGRATFLPLNKMRDERRDLS-I 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 650 ECLALELEESHHKVESQQK-------------MITELE-GQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHST-- 713
Cdd:TIGR02169 593 LSEDGVIGFAVDLVEFDPKyepafkyvfgdtlVVEDIEaARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRse 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 714 -----HLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELV-LQKERIQVLEDQRTLQtkileEDLEQIKHSLR 787
Cdd:TIGR02169 673 paelqRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGeIEKEIEQLEQEEEKLK-----ERLEELEEDLS 747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 788 ERSQELAsqwqlvheraddgkspskgqrgslehlklilrDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVgetslll 867
Cdd:TIGR02169 748 SLEQEIE--------------------------------NVKSELKELEARIEELEEDLHKLEEALNDLEARL------- 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 868 thREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHAT 947
Cdd:TIGR02169 789 --SHSRIPEIQAELSKLEEE----VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK 862
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 948 LKERQGELEEHREQVRRLQEElevegrqvraleevLGDLRAESREHEKAVLALQQRcaeqAQEHEAEARTLQDSWLQAQA 1027
Cdd:TIGR02169 863 KEELEEELEELEAALRDLESR--------------LGDLKKERDELEAQLRELERK----IEELEAQIEKKRKRLSELKA 924
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1907135542 1028 TLTEQEQELAALrAENQYSRRQEEAAVSQAEALQEALSKAQAALQ 1072
Cdd:TIGR02169 925 KLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQAELQRVEEEIR 968
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
57-976 |
2.85e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 57 DMKIQKLKEQ-----ETTGMLQAQLQETQQELkEAAQQHRDDLAAFQKDKLDLQK-QVEDLMSQLVAHDDSQRLVKEEIE 130
Cdd:TIGR02169 169 DRKKEKALEEleeveENIERLDLIIDEKRQQL-ERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 131 EKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRqqelssLRQDIQEAQEGQRELGVQVELLRQEVKEKE 210
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR------VKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 211 AdfvaREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSA 290
Cdd:TIGR02169 322 E----RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 291 CESRPELRGGGDsaptlwgpdpdqngasRLFKRwslptalspeavalaLQKLHQDVWKARQARDDLRDQVQKLVQRLTDT 370
Cdd:TIGR02169 398 KREINELKRELD----------------RLQEE---------------LQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 371 EAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQ 450
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 451 VEHL-------QACVAEAQAQADAAAVLEEDLRTARSALKLKNE-----------ELESERERAQALQEQGELKVAQgka 512
Cdd:TIGR02169 527 VAQLgsvgeryATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRkagratflplnKMRDERRDLSILSEDGVIGFAV--- 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 513 lqeNLALLAQTLSNREREVETLQAEVQELEKQRE-MQKAALELLSLDLKKRSREVDLQQEQIQELEQcrsvlehlpMAVQ 591
Cdd:TIGR02169 604 ---DLVEFDPKYEPAFKYVFGDTLVVEDIEAARRlMGKYRMVTLEGELFEKSGAMTGGSRAPRGGIL---------FSRS 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 592 EREQKLSVqRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLgtlECLALELEESHHKVESQQKMIT 671
Cdd:TIGR02169 672 EPAELQRL-RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI---EQLEQEEEKLKERLEELEEDLS 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 672 ELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHlaKELQERDQEVTSQRQQIDELQKQQEQLAQALERKG 751
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 752 QELVLQKERIQVLEDQRtlqtkileEDLEQIKHSLRERSQELasqwqlvheraddgkspskgqRGSLEHLKLILRDKEKE 831
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQR--------IDLKEQIKSIEKEIENL---------------------NGKKEELEEELEELEAA 876
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 832 VECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDH 911
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907135542 912 ELEtlRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQV 976
Cdd:TIGR02169 957 QAE--LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
731-1342 |
4.13e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 4.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 731 QQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSP 810
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 811 SKGQRGSLEHLKLilrDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGEL 890
Cdd:PTZ00121 1292 ADEAKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 891 REQvlqgQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEqahatlKERQGELEEHREQVRRlQEELE 970
Cdd:PTZ00121 1369 AEK----KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA------KKKADEAKKKAEEKKK-ADEAK 1437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 971 VEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQatltEQEQELAALRAENQYSRRQE 1050
Cdd:PTZ00121 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE----EAKKKADEAKKAAEAKKKAD 1513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1051 EAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEE----ALRIREGEIQAQALQ 1126
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmALRKAEEAKKAEEAR 1593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1127 HHEVTQHLQQELCQKKEELRQLLE---KAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEilmLREA 1203
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEakiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE---AKKA 1670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1204 SSPRHRALPAEKPALQPLPAQQELERLQTALRQTE---AREIEWREKAQDLALSLAQSKASISSLQeitmflqasvlERE 1280
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEelkKKEAEEKKKAEELKKAEEENKIKAEEAK-----------KEA 1739
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907135542 1281 SEQQRLQEELVLSRQALEEQQSGGPHSTSRADQGPKVGQGSQSGEVETEPSPGVEEKERLTQ 1342
Cdd:PTZ00121 1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
676-1000 |
5.41e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 5.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 676 QREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQalerkgqelv 755
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE---------- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 756 lqkeriqvlEDQRTLQTKI--LEEDLEQIKHSLRERSQELasqwQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVE 833
Cdd:TIGR02169 287 ---------EEQLRVKEKIgeLEAEIASLERSIAEKEREL----EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 834 CQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHEL 913
Cdd:TIGR02169 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE----LDRLQEELQRLSEELADLNAAI 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 914 ETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREH 993
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
....*..
gi 1907135542 994 EKAVLAL 1000
Cdd:TIGR02169 510 RAVEEVL 516
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
530-1081 |
8.51e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 8.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 530 EVETLQAEVQELEK-QREMQKAA--LELLSlDLKKRSREVDLQQEQIQELEQCRSVLEHlpmavQEREQKLSVQRDQIRE 606
Cdd:COG4913 226 AADALVEHFDDLERaHEALEDAReqIELLE-PIRELAERYAAARERLAELEYLRAALRL-----WFAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 607 LENDR---EAQRSVLEHQLLDLEQKAQVIESQR-----GQIQDLKKQLGTLECLALELEESHHKVESQQKMIT-ELEGQR 677
Cdd:COG4913 300 LRAELarlEAELERLEARLDALREELDELEAQIrgnggDRLEQLEREIERLERELEERERRRARLEALLAALGlPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 678 EMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQID----ELQKQQEQLAQALERKGQE 753
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSnipaRLLALRDALAEALGLDEAE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 754 LVLQKERIQVLEDQ-----------RTLQTKIL--EEDLEQIKHSLRERSQELASQWQLVHERADDGKSPsKGQRGSLEH 820
Cdd:COG4913 460 LPFVGELIEVRPEEerwrgaiervlGGFALTLLvpPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERP-RLDPDSLAG 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 821 lKLILRDKEKEvecqqeriQELQGHMGQleqqlQGLHRKVGETSLLLTHREQETATLQ----QHLQEAKEQGELREQVLQ 896
Cdd:COG4913 539 -KLDFKPHPFR--------AWLEAELGR-----RFDYVCVDSPEELRRHPRAITRAGQvkgnGTRHEKDDRRRIRSRYVL 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 897 GQleEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALE--QAHATLKERQGELEEHREQVRRLQEE---LEV 971
Cdd:COG4913 605 GF--DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAElerLDA 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 972 EGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEaEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEE 1051
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE-QAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
570 580 590
....*....|....*....|....*....|.
gi 1907135542 1052 AAVSQ-AEALQEALSKAQAALQEKEQSLLEQ 1081
Cdd:COG4913 762 AVERElRENLEERIDALRARLNRAEEELERA 792
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
335-551 |
1.65e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 335 VALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHE 414
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 415 TAASLQSRLRQ---------AELQKMEAQNDRELLQASK---------EKLSAQVEHLQACVAEAQAQADAAAVLEEDLR 476
Cdd:COG4942 91 EIAELRAELEAqkeelaellRALYRLGRQPPLALLLSPEdfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907135542 477 TARSALKLKNEELESERERAQALQEQGELKVAQgkaLQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAA 551
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
129-982 |
5.72e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 5.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 129 IEEKVKVAQECSRIQKELEKENAslalsLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELG-VQVELLRQEVK 207
Cdd:TIGR02169 159 IDEIAGVAEFDRKKEKALEELEE-----VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKReYEGYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 208 EKEADFVAREAQLlEELEASRvaeQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQpeNQAQAQLASLCSVLQQAL 287
Cdd:TIGR02169 234 ALERQKEAIERQL-ASLEEEL---EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ--LRVKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 288 GSACESRPELRgggDSAPTLwgpdpdQNGASRLFKRWSLPTALSPEAVALALQK--LHQDVWKARQARDDLRDQVQKL-- 363
Cdd:TIGR02169 308 RSIAEKERELE---DAEERL------AKLEAEIDKLLAEIEELEREIEEERKRRdkLTEEYAELKEELEDLRAELEEVdk 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 364 -----VQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRE 438
Cdd:TIGR02169 379 efaetRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 439 LLQASKEKLSAQVEHLQacvaeaqaqadaaavleEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENL- 517
Cdd:TIGR02169 459 QLAADLSKYEQELYDLK-----------------EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIq 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 518 ---ALLAQTLSNRERE----------------VETLQAEVQELEKQREMQKAALELLSLDlKKRSREVDLQQEQIQeleq 578
Cdd:TIGR02169 522 gvhGTVAQLGSVGERYataievaagnrlnnvvVEDDAVAKEAIELLKRRKAGRATFLPLN-KMRDERRDLSILSED---- 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 579 crSVLEHLPMAVQEREQKLSVQRDQIRE---LENDREAQRSVLEHQLLDLE----QKAQVI----ESQRGQIQDLKKQLG 647
Cdd:TIGR02169 597 --GVIGFAVDLVEFDPKYEPAFKYVFGDtlvVEDIEAARRLMGKYRMVTLEgelfEKSGAMtggsRAPRGGILFSRSEPA 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 648 tleclaleleeshhKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELEnhsthlaKELQERDQEVT 727
Cdd:TIGR02169 675 --------------ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE-------KEIEQLEQEEE 733
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 728 SQRQQIDELQKQQEQLAQALERKGQELVLQKERIQvledQRTLQTKILEEDLEQIKHSLRErsqelaSQWQLVHERADDG 807
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIE----ELEEDLHKLEEALNDLEARLSH------SRIPEIQAELSKL 803
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 808 KSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQEtatlqqhlqEAKEQ 887
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---------LEELE 874
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 888 GELREqvLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQV----- 962
Cdd:TIGR02169 875 AALRD--LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPeeels 952
|
890 900
....*....|....*....|.
gi 1907135542 963 -RRLQEELEVEGRQVRALEEV 982
Cdd:TIGR02169 953 lEDVQAELQRVEEEIRALEPV 973
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
533-969 |
8.71e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 8.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 533 TLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEqcrSVLEHLPMAVQEREQKLSVQRDQIRELENdre 612
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLK---DEQNKIKKQLSEKQKELEQNNKKIKELEK--- 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 613 aQRSVLEHQLLDLEQkaqviESQRGQIQDLKKQLgtlECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLE 692
Cdd:TIGR04523 289 -QLNQLKSEISDLNN-----QKEQDWNKELKSEL---KNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 693 ERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQT 772
Cdd:TIGR04523 360 EKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNN 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 773 KILeEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQ 852
Cdd:TIGR04523 440 SEI-KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 853 LQGLHRKVGETSLLLTHREQETATLQQHLQEAKEqgELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKL 932
Cdd:TIGR04523 519 ISSLKEKIEKLESEKKEKESKISDLEDELNKDDF--ELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK 596
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907135542 933 KTSALQAALEQAHATLKERQGELEEHREQVRRLQEEL 969
Cdd:TIGR04523 597 EKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
23-212 |
9.01e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 9.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 23 QLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTgmlQAQLQETQQELKEAAQQHRDDLAAFQKDKL 102
Cdd:COG4913 243 ALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRR---LELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 103 DLQKQVEDLMSQLVAHDDSQR-LVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSL 181
Cdd:COG4913 320 ALREELDELEAQIRGNGGDRLeQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEE 399
|
170 180 190
....*....|....*....|....*....|.
gi 1907135542 182 RQDIQEAqegQRELGVQVELLRQEVKEKEAD 212
Cdd:COG4913 400 LEALEEA---LAEAEAALRDLRRELRELEAE 427
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-241 |
1.32e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 6 AQREEERSQADSALYQMQLETEKERV-SLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGmLQAQLQETQQELK 84
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVeQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLK 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 85 EAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRL 164
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907135542 165 LILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEadfvAREAQLLEELEASRVAEQQLRASLWAQ 241
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR----EKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
6-287 |
1.47e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 6 AQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDmkIQKLKEQettgmlQAQLQETQQELKE 85
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE--EEKLKER------LEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 86 AAQQHRDDLAAFQKDKLDLQKQVEDLMSQLvaHDDSQRLVKEEIEEKVKVAQEcsriqkeLEKENASLALSLVEKEKRLl 165
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEAL--NDLEARLSHSRIPEIQAELSK-------LEEEVSRIEARLREIEQKL- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 166 ilqeadSVRQQELSSLRQDIQEAQEGQRELgvqvELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKA 245
Cdd:TIGR02169 822 ------NRLTLEKEYLEKEIQELQEQRIDL----KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1907135542 246 TQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQAL 287
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
733-1065 |
1.87e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 733 IDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspsk 812
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKR------ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 813 gqrgsLEHLKLILRDKEKEVE-CQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGElr 891
Cdd:TIGR02169 267 -----LEEIEQLLEELNKKIKdLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE-- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 892 eqVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEV 971
Cdd:TIGR02169 340 --ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 972 EGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQE----------HEAEARTLQDSWLQAQATLTEQEQELAALRA 1041
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKleqlaadlskYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
330 340
....*....|....*....|....
gi 1907135542 1042 ENQYSRRQEEAAVSQAEALQEALS 1065
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQ 521
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
875-1191 |
2.28e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 875 ATLQQHLQEAKEQGELREQ--VLQGQLEEAQRDLAQRD---HELETLRQE-----KQQTQDQEESMKLKTSALQAALEQ- 943
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEdkLVQQDLEQTLALLDKIDrqkEETEQLKQQlaqapAKLRQAQAELEALKDDNDEETRETl 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 944 AHATLKERQGELEEHREQVRRLQEEL-------------------EVEGRQVRALEevLGDLRAESREHEKAVLALQQ-- 1002
Cdd:PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLaeynsqlvslqtqperaqaALYANSQRLQQ--IRNLLKGGKVGGKALRPSQRvl 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1003 RCAEQA--------QEHEAEARTLQDSWLQAQ-----ATLTEQEQELAALRAE-NQYSRRQEEAAVSQAEALQEALSKAQ 1068
Cdd:PRK11281 197 LQAEQAllnaqndlQRKSLEGNTQLQDLLQKQrdyltARIQRLEHQLQLLQEAiNSKRLTLSEKTVQEAQSQDEAARIQA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1069 AALQEKE--------QSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEI--------QAQALQHHEVTQ 1132
Cdd:PRK11281 277 NPLVAQEleinlqlsQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLllsrilyqQQQALPSADLIE 356
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907135542 1133 HL----------QQELCQKKEELRQL---LEKAGARRSQENGIQEKQSLEQ---ERQEetrrLLESL-KEL--QLTVA 1191
Cdd:PRK11281 357 GLadriadlrleQFEINQQRDALFQPdayIDKLEAGHKSEVTDEVRDALLQlldERRE----LLDQLnKQLnnQLNLA 430
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
485-1078 |
2.41e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 2.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 485 KNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSR 564
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 565 EVDLqqeqiqeleqcrsvlehlpmavqeREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKK 644
Cdd:TIGR04523 111 EIKN------------------------DKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 645 QLGTLECLALELEESHHKVESQQKMItelegqrEMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQ 724
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKI-------KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 725 EVTSQRQQIDELQKQQEQLAQALERKGQELvlqKERIQVLEDQRTLqTKILEEDLEQIKHSLRERSQELASQWqlvhera 804
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQL---SEKQKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDW------- 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 805 ddgkspskgqrgsLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKvgetsllLTHREQETATLQQHLQEA 884
Cdd:TIGR04523 309 -------------NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE-------LTNSESENSEKQRELEEK 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 885 KEqgelreqvlqgqleeaqrdlaqrdhELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRR 964
Cdd:TIGR04523 369 QN-------------------------EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 965 LQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQ---EHEAEARTLQDSWLQAQATLTEQEQELAALRA 1041
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETqlkVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503
|
570 580 590
....*....|....*....|....*....|....*..
gi 1907135542 1042 ENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSL 1078
Cdd:TIGR04523 504 EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
883-1396 |
2.55e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 883 EAKEQGELREQvlqgqLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSA----------LQAALEQAHATLKERQ 952
Cdd:PRK02224 197 EEKEEKDLHER-----LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEheerreeletLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 953 GELEEHREQVRRLQEEL-EVEGRQVRALEEV-LGDLRAESREHEKAVLALQ--------QRCAEQAQEHEAEARTLQDSW 1022
Cdd:PRK02224 272 REREELAEEVRDLRERLeELEEERDDLLAEAgLDDADAEAVEARREELEDRdeelrdrlEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1023 LQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTC 1102
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1103 QASARQLEEalRIREGEIQAQALQHHEVTQHLQ--------QELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQE 1174
Cdd:PRK02224 432 EATLRTARE--RVEEAEALLEAGKCPECGQPVEgsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1175 ETRRLLESLKELQLTVAQREEEILMLRE-ASSPRHRAlpaekpalQPLPAQQELERLQTALRQTEAREIewREKAQDLAL 1253
Cdd:PRK02224 510 RIERLEERREDLEELIAERRETIEEKRErAEELRERA--------AELEAEAEEKREAAAEAEEEAEEA--REEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1254 SLAQSKASISSLQEITMfLQASVLERESEQQRLQEElvlsRQALEEQQSggphstsradqgpkvgqgsqsgevetepspg 1333
Cdd:PRK02224 580 KLAELKERIESLERIRT-LLAAIADAEDEIERLREK----REALAELND------------------------------- 623
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907135542 1334 vEEKERLTQRLERLQQAVAELEVDR-SKLQCHNAQLRTALEQVERERRKL--KRDSVRaSRAGSLE 1396
Cdd:PRK02224 624 -ERRERLAEKRERKRELEAEFDEARiEEAREDKERAEEYLEQVEEKLDELreERDDLQ-AEIGAVE 687
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
339-972 |
4.42e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 4.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 339 LQKLHQDVWKARQARDDLR------DQVQKLVQRLTDTEAQKSQVhsELQDLQRQLSQSQEEKSKWEGRQNSLESELRDL 412
Cdd:COG4913 237 LERAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 413 HETAASLQSRLRQAELQKMEAQNDRellqasKEKLSAQVEHLQAcvaEAQAQADAAAVLEEDLRTARSALKLKNEELESE 492
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDR------LEQLEREIERLER---ELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 493 RERAQALQEQGElkvAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQR----EMQKAALELLSLDLKKRSRE--- 565
Cdd:COG4913 386 RAEAAALLEALE---EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLDEAElpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 566 ----VDLQQEQIQELEQCRSVL-----------EHLPMA---VQEREQKLSVQRDQIREleNDREAQRSVLEHQLLdleq 627
Cdd:COG4913 463 vgelIEVRPEEERWRGAIERVLggfaltllvppEHYAAAlrwVNRLHLRGRLVYERVRT--GLPDPERPRLDPDSL---- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 628 kAQVIESQRGQIQD-LKKQLGtleclaleLEESHHKVESQQkmitelegqremqrvalthlTLDLEERSQELQAQSSQLH 706
Cdd:COG4913 537 -AGKLDFKPHPFRAwLEAELG--------RRFDYVCVDSPE--------------------ELRRHPRAITRAGQVKGNG 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 707 ELENHSTHlaKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKhsL 786
Cdd:COG4913 588 TRHEKDDR--RRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID--V 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 787 RERSQELAsQWQLVHERADDGKSpskgqrgSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLL 866
Cdd:COG4913 664 ASAEREIA-ELEAELERLDASSD-------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 867 LTHREQE-----TATLQQHLQEAKEQGELRE--QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEesmklkTSALQA 939
Cdd:COG4913 736 LEAAEDLarlelRALLEERFAAALGDAVERElrENLEERIDALRARLNRAEEELERAMRAFNREWPAE------TADLDA 809
|
650 660 670
....*....|....*....|....*....|....*..
gi 1907135542 940 ALEQAHATLKERQG----ELEEHREQVRRLQEELEVE 972
Cdd:COG4913 810 DLESLPEYLALLDRleedGLPEYEERFKELLNENSIE 846
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
671-1038 |
4.83e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 4.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 671 TELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQeRDQEVTSQRQQIDELQKQQEQLAQALERk 750
Cdd:PRK04863 289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN-LVQTALRQQEKIERYQADLEELEERLEE- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 751 gQELVLQKERIQVLEDQRtlQTKILEEDLEQIKHSLRERSQEL------ASQWQLVHERADDGKSPSKGQRGSLEHLKL- 823
Cdd:PRK04863 367 -QNEVVEEADEQQEENEA--RAEAAEEEVDELKSQLADYQQALdvqqtrAIQYQQAVQALERAKQLCGLPDLTADNAEDw 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 824 --ILRDKEKEVECQ----QERIQELQGHMGQLEQQLQGLHRKVGETSlllthREQETATLQQHLQEAKEQGELREQV--L 895
Cdd:PRK04863 444 leEFQAKEQEATEEllslEQKLSVAQAAHSQFEQAYQLVRKIAGEVS-----RSEAWDVARELLRRLREQRHLAEQLqqL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 896 QGQLEEAQRDLAQRdHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQ 975
Cdd:PRK04863 519 RMRLSELEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907135542 976 VRALEEV---LGDLRAESREHEKAVLALQQRCAEQAQ---EHEAEARTLQDSWLQAQATLTEQEQELAA 1038
Cdd:PRK04863 598 LAARAPAwlaAQDALARLREQSGEEFEDSQDVTEYMQqllERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
692-1385 |
6.58e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 6.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 692 EERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVlqkERIQVLEDQRTLQ 771
Cdd:TIGR02169 205 REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLE---EIEQLLEELNKKI 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 772 TKILEEDLEQIKHSLRERSQELASQwqlvheraddgkspskgqRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQ 851
Cdd:TIGR02169 282 KDLGEEEQLRVKEKIGELEAEIASL------------------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 852 QLQGLHRKVGETSLLLTHREQETATLQQHLQE-AKEQGELREQV--LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEE 928
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEvDKEFAETRDELkdYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 929 SMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDL--RAESREHEKAVLALQQRCAE 1006
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVekELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1007 QAQEHEAEARTLQDSWLQAQATLTEQeqelaALRAENQYSRRQEEAAVSQAEALQ-EALSKAQAALQekeqsLLEQAELS 1085
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQ-----LGSVGERYATAIEVAAGNRLNNVVvEDDAVAKEAIE-----LLKRRKAG 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1086 HTLEASTAALQATLDTCQASARQ--LEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELR----------QLLEKAG 1153
Cdd:TIGR02169 574 RATFLPLNKMRDERRDLSILSEDgvIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMgkyrmvtlegELFEKSG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1154 A--------RRSQENGIQEKQSLEQ--ERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEKPALQPLPA 1223
Cdd:TIGR02169 654 AmtggsrapRGGILFSRSEPAELQRlrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1224 Q--QELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVL-----ERESEQQRLQEELVLSRQA 1296
Cdd:TIGR02169 734 KlkERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSRIEAR 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1297 LEEQQSGGPHSTSRADQGPKVGQGSQSGEVETEpspgvEEKERLTQRLERLQQAVAELEVDRSKLQCHNAQLRTALEQVE 1376
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK-----EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
....*....
gi 1907135542 1377 RERRKLKRD 1385
Cdd:TIGR02169 889 KERDELEAQ 897
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
353-1124 |
7.02e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 353 RDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEekskwegRQNSLESELRDLHETAASLQSRLRQAElqkmE 432
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSA-------RESDLEQDYQAASDHLNLVQTALRQQE----K 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 433 AQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERA----QALQeqgelkvA 508
Cdd:COG3096 349 IERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAiqyqQAVQ-------A 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 509 QGKAlQENLALLAQTLSNREREVETLQAEVQELEKQRemqkaalellsLDLKKRSREVDLQQEQIQELEQcrsVLEHLPM 588
Cdd:COG3096 422 LEKA-RALCGLPDLTPENAEDYLAAFRAKEQQATEEV-----------LELEQKLSVADAARRQFEKAYE---LVCKIAG 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 589 AVqEREQKLSVQRDQIRELENDRE--AQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQ 666
Cdd:COG3096 487 EV-ERSQAWQTARELLRRYRSQQAlaQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQ 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 667 QKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQER---DQEVTSQRQQIDELQKQQEQL 743
Cdd:COG3096 566 LEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEAladSQEVTAAMQQLLEREREATVE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 744 AQALERKGQELVLQKERIQVL---EDQRTLQTK---------------------------------ILEEDLEQIKHSLR 787
Cdd:COG3096 646 RDELAARKQALESQIERLSQPggaEDPRLLALAerlggvllseiyddvtledapyfsalygparhaIVVPDLSAVKEQLA 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 788 ER-----------------------SQELA-------SQWQLVHERADdgKSPSKGQRGSLEHLKLILRDKEKEVE---- 833
Cdd:COG3096 726 GLedcpedlyliegdpdsfddsvfdAEELEdavvvklSDRQWRYSRFP--EVPLFGRAAREKRLEELRAERDELAEqyak 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 834 --CQQERIQELQGHMGQL-------------EQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQ 898
Cdd:COG3096 804 asFDVQKLQRLHQAFSQFvgghlavafapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQA 883
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 899 LEEAQRDLAQRdheLETLRQEKQQTQDQEESMKLKTSALqAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRA 978
Cdd:COG3096 884 NLLADETLADR---LEELREELDAAQEAQAFIQQHGKAL-AQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFA 959
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 979 LEEVLGDLRAESREHEKAVL----ALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAV 1054
Cdd:COG3096 960 LSEVVQRRPHFSYEDAVGLLgensDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELE 1039
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907135542 1055 SQAEAL-----QEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALR-IREGEIQAQA 1124
Cdd:COG3096 1040 QELEELgvqadAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKqEREQVVQAKA 1115
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
959-1238 |
8.32e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 8.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 959 REQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRcaeqaqeheAEARTLQDSWLQAQATLTEQEQELAA 1038
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRL---------AEYSWDEIDVASAEREIAELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1039 LRAENQYSRRQEEaAVSQAEALQEALSKAQAALQEKEQSL-LEQAELSHTLEASTAALQATLDTCQASARQLEEALRIRE 1117
Cdd:COG4913 680 LDASSDDLAALEE-QLEELEAELEELEEELDELKGEIGRLeKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1118 GEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLtvAQREEEI 1197
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGL--PEYEERF 836
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1907135542 1198 LMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTE 1238
Cdd:COG4913 837 KELLNENSIEFVADLLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
383-1197 |
9.49e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.73 E-value: 9.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 383 DLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAE--LQKMEA----QNDRELLQASKEKLSAQVEHLQA 456
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhLNLVQTalrqQEKIERYQADLEELEERLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 457 CVAeaqaqadaaavlEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLA-----QTLSNREREV 531
Cdd:PRK04863 370 VVE------------EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAlerakQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 532 ETLQAEVQELekQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEhlpmavQEREQKLSVQRDQIRELENDR 611
Cdd:PRK04863 438 DNAEDWLEEF--QAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE------VSRSEAWDVARELLRRLREQR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 612 --EAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTL 689
Cdd:PRK04863 510 hlAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 690 DLEERSQELQAQSSQLHELENHSTHlakeLQERDQEVTSQRQQIDELQKQQeqlaqaLERkgqELVLQKERIQVLEDQRT 769
Cdd:PRK04863 590 QLQARIQRLAARAPAWLAAQDALAR----LREQSGEEFEDSQDVTEYMQQL------LER---ERELTVERDELAARKQA 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 770 LQTKIleEDLEQIKHSLRERSQELASQW--QLVHERADD---GKSPSKGQR-GSLEHlkLILRDKEKEVECQQERIQELQ 843
Cdd:PRK04863 657 LDEEI--ERLSQPGGSEDPRLNALAERFggVLLSEIYDDvslEDAPYFSALyGPARH--AIVVPDLSDAAEQLAGLEDCP 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 844 GHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQ----QHLQEAKEQGELREQVLqgQLEEAQRDLAQRDHELETLRQE 919
Cdd:PRK04863 733 EDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQwrysRFPEVPLFGRAAREKRI--EQLRAEREELAERYATLSFDVQ 810
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 920 KQQTQDQEESMKLKTSAL-------QAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESRE 992
Cdd:PRK04863 811 KLQRLHQAFSRFIGSHLAvafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADE 890
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 993 HekavlaLQQRCAEqAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQySRRQEEAAVSQAEALQEALSKAQAALQ 1072
Cdd:PRK04863 891 T------LADRVEE-IREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPE-QFEQLKQDYQQAQQTQRDAKQQAFALT 962
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1073 EKEQSLLEQA-ELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLlek 1151
Cdd:PRK04863 963 EVVQRRAHFSyEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQEL--- 1039
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 1907135542 1152 agARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEI 1197
Cdd:PRK04863 1040 --KQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQL 1083
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1-750 |
9.81e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 9.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1 MEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTgMLQAQLQETQ 80
Cdd:pfam02463 277 EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK-ELEIKREAEE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 81 QELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEK 160
Cdd:pfam02463 356 EEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 161 EKRLLILQEADSVRQQELSSLRQdIQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWA 240
Cdd:pfam02463 436 EESIELKQGKLTEEKEELEKQEL-KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLA 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 241 QEAKATQLQLQLRStESQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDSAPTLWGPDPDQNGASRL 320
Cdd:pfam02463 515 LIKDGVGGRIISAH-GRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 321 FKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEG 400
Cdd:pfam02463 594 IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTK 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 401 RQNSLESELRDLHETAASLQSRLRQAELQKMEaqndrELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARS 480
Cdd:pfam02463 674 ELLEIQELQEKAESELAKEEILRRQLEIKKKE-----QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE 748
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 481 ALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLK 560
Cdd:pfam02463 749 EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 828
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 561 KRSREVDLQQEQIQELEQCR--SVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQ 638
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLekLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 639 IQDLKKQlgtLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKE 718
Cdd:pfam02463 909 LNLLEEK---ENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEE 985
|
730 740 750
....*....|....*....|....*....|..
gi 1907135542 719 LQERDQEVTSQRQQIDELQKQQEQLAQALERK 750
Cdd:pfam02463 986 KEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
662-969 |
1.10e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 50.21 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 662 KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQE 741
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 742 QLAQALERKGQELVLQKERiqvledqrtlqTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspSKGQRGSLEHL 821
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQR-----------AAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEE----KSTLAGEIRDL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 822 KLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEA-------KEQGELREQV 894
Cdd:pfam10174 386 KDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKeriierlKEQREREDRE 465
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907135542 895 LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEEL 969
Cdd:pfam10174 466 RLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQL 540
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
864-1083 |
1.42e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 864 SLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQ 943
Cdd:COG4942 8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 944 AHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQdswl 1023
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA---- 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1024 QAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAE 1083
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
527-1197 |
2.02e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 527 REREVETLQAEV-QELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIR 605
Cdd:TIGR02169 185 NIERLDLIIDEKrQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 606 ELENDREAQRSVLEHQLLDLEQKAQV------------IESQRGQIQDLKKQLGTLECLALELEESHHKVESQqkmITEL 673
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKIKDLGEEEQLrvkekigeleaeIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---IEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 674 EGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQE 753
Cdd:TIGR02169 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 754 LVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQeLASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVE 833
Cdd:TIGR02169 422 LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ-LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 834 CQQERIQELQGHMGQLEQQLQGLH---------------------------------------------RKVGETSLLLT 868
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKASIQGVHgtvaqlgsvgeryataievaagnrlnnvvveddavakeaiellkrRKAGRATFLPL 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 869 HREQETATLQQHLQEAKEQGE------------------LREQVLQGQLEEAQR-------------------------- 904
Cdd:TIGR02169 581 NKMRDERRDLSILSEDGVIGFavdlvefdpkyepafkyvFGDTLVVEDIEAARRlmgkyrmvtlegelfeksgamtggsr 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 905 --------------DLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 970
Cdd:TIGR02169 661 aprggilfsrsepaELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 971 VEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAE-QAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQ 1049
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1050 EEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEI---QAQALQ 1126
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERdelEAQLRE 900
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907135542 1127 HHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETrrllESLKELQLTVAQREEEI 1197
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE----LSLEDVQAELQRVEEEI 967
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
39-278 |
3.13e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 39 RTQKELADASQQLERLRQDMKIQKLKEQEttgmLQAQLQETQQELKEAAQQhrddLAAFQKDKLDLQKQVEDLMSQLVAH 118
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKA----LLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 119 DDSQRLVKEEIEEKVKVAQECSRIQKELEKENASlalSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQ 198
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 199 VELLRQEVKEKEadfvareaQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLAS 278
Cdd:COG4942 173 RAELEALLAELE--------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
690-1256 |
3.17e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 690 DLEERSQELQAQSSQLHEL-ENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQR 768
Cdd:COG4913 239 RAHEALEDAREQIELLEPIrELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 769 TLqtkiLEEDLEQIKHSLRErsqelasqwqlvheraddgkspSKGQRgsLEHLklilrdkEKEVECQQERIQELQGHMGQ 848
Cdd:COG4913 319 DA----LREELDELEAQIRG----------------------NGGDR--LEQL-------EREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 849 LEQQLQGLHRKVGETslllthrEQETATLQQHLQEAKEQgelreqvLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEE 928
Cdd:COG4913 364 LEALLAALGLPLPAS-------AEEFAALRAEAAALLEA-------LEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 929 SMKLKTSALQAALEQAHATLKErqgELEEHREQVRRLQEELEVEGRQVR---ALEEVLGDLRAE---SREHEKAVLA--- 999
Cdd:COG4913 430 SLERRKSNIPARLLALRDALAE---ALGLDEAELPFVGELIEVRPEEERwrgAIERVLGGFALTllvPPEHYAAALRwvn 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1000 -------LQQRCAEQAQEHEAEARTLQDS--------------WLQAQ----------ATLTEQEQELAALRAENQYS-- 1046
Cdd:COG4913 507 rlhlrgrLVYERVRTGLPDPERPRLDPDSlagkldfkphpfraWLEAElgrrfdyvcvDSPEELRRHPRAITRAGQVKgn 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1047 ----------------------RRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTcqa 1104
Cdd:COG4913 587 gtrhekddrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV--- 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1105 saRQLEEALRIREGEIQAQALQHHEVTQhLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLK 1184
Cdd:COG4913 664 --ASAEREIAELEAELERLDASSDDLAA-LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE 740
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907135542 1185 ELQlTVAQREEEILMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAR-EIEWREKAQDLALSLA 1256
Cdd:COG4913 741 DLA-RLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLE 812
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
350-1042 |
3.30e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 350 RQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQ 429
Cdd:TIGR00606 348 EQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 430 KMEAQNDR----ELLQASKEKLSAQVEHLQACVAEAQAQADAAA---VLEEDLRTARSALKL--KNEELESERERAQALQ 500
Cdd:TIGR00606 428 ADEIRDEKkglgRTIELKKEILEKKQEELKFVIKELQQLEGSSDrilELDQELRKAERELSKaeKNSLTETLKKEVKSLQ 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 501 -EQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSL--DLKKRSREVDLQQEQIQELE 577
Cdd:TIGR00606 508 nEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgYFPNKKQLEDWLHSKSKEIN 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 578 QCRSVLEHLPMAVQEREQklsvQRDQIRELENDREAQRSVLEHQLLDL---EQKAQVIESQRGQIQDLKKQLGTLECLAL 654
Cdd:TIGR00606 588 QTRDRLAKLNKELASLEQ----NKNHINNELESKEEQLSSYEDKLFDVcgsQDEESDLERLKEEIEKSSKQRAMLAGATA 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 655 ELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERsqeLQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQID 734
Cdd:TIGR00606 664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSK---LRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIID 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 735 ELQKQQEQLAQALERKGQElvLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQ 814
Cdd:TIGR00606 741 LKEKEIPELRNKLQKVNRD--IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGS 818
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 815 RG--SLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGEtslLLTHREQETATLQQHLQEAKEQGELRE 892
Cdd:TIGR00606 819 DLdrTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE---LKSEKLQIGTNLQRRQQFEEQLVELST 895
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 893 QVlqgqlEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEelEVE 972
Cdd:TIGR00606 896 EV-----QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ--DGK 968
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 973 GRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEarTLQDSWLQAQATLTEQEQELAALRAE 1042
Cdd:TIGR00606 969 DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQ--KIQERWLQDNLTLRKRENELKEVEEE 1036
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-219 |
3.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 2 EAIRAQREEERSQADSALYQMQlETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQEttgmLQAQLQETQQ 81
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELA-ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE----LEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 82 ELKEAAQQHRDDLAAFQK----DKLDL---QKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLA 154
Cdd:COG4942 98 ELEAQKEELAELLRALYRlgrqPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907135542 155 LSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQ 219
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
380-1218 |
5.31e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 5.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 380 ELQDLQRQLSQSQE--EKSKWEGRQNSLEselrdlhetaasLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHlqac 457
Cdd:pfam15921 86 QVKDLQRRLNESNElhEKQKFYLRQSVID------------LQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQN---- 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 458 vaeAQAQADAAAVLEEDLrtarsalkLKNEELESERERAQALQEQGelkvaqgkALQENLALLaqtlsnrereVETLQAE 537
Cdd:pfam15921 150 ---TVHELEAAKCLKEDM--------LEDSNTQIEQLRKMMLSHEG--------VLQEIRSIL----------VDFEEAS 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 538 VQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELE-QCRSVLEHLPMAVQER-EQKLSVQRDQIRELENDREAQR 615
Cdd:pfam15921 201 GKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIfPVEDQLEALKSESQNKiELLLQQHQDRIEQLISEHEVEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 616 SVLEHQLLDLEQKAQVIESQRGQIQDlkkqlgtleclaleleESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERS 695
Cdd:pfam15921 281 TGLTEKASSARSQANSIQSQLEIIQE----------------QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 696 QELQAQssqlheLENHSTHLAKELQERDQevtsQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLED--------- 766
Cdd:pfam15921 345 EELEKQ------LVLANSELTEARTERDQ----FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDrdtgnsiti 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 767 ---QRTLQTKILE-EDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQEL 842
Cdd:pfam15921 415 dhlRRELDDRNMEvQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 843 QGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVlQGQLEEAQRDLAQRDHELETLRQEKQQ 922
Cdd:pfam15921 495 ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV-QTECEALKLQMAEKDKVIEILRQQIEN 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 923 TQDQEESMKLKTSALQAALEQAHATLKERQGELEEhreqvrrLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQ 1002
Cdd:pfam15921 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE-------FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR 646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1003 RCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQA 1082
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAM 726
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1083 ELSHTLEASTAALQATLDTCQASARQLEEALriregeIQAQALQH--HEVTQHLQQELCQKKEELRQLLEKAGARRSQEN 1160
Cdd:pfam15921 727 KVAMGMQKQITAKRGQIDALQSKIQFLEEAM------TNANKEKHflKEEKNKLSQELSTVATEKNKMAGELEVLRSQER 800
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907135542 1161 GIQEK-QSLEQERQEETRRLLES----LKELQLTVAQREEEILMLREASSPRHRALPAEKPAL 1218
Cdd:pfam15921 801 RLKEKvANMEVALDKASLQFAECqdiiQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRL 863
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
383-951 |
5.47e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 383 DLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQ 462
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 463 AQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVaqgkaLQENLALLAQTLSNREREVETLQAEVQELE 542
Cdd:PRK03918 270 ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK-----RLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 543 KQREMQKAALEllslDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQERE-QKLSVQRDQIRELENDREAQRSVLEHQ 621
Cdd:PRK03918 345 KKLKELEKRLE----ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKElEELEKAKEEIEEEISKITARIGELKKE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 622 LLDLEQKAQVIESQRGQIQDLKKQLgTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHL--TLDLEERSQELQ 699
Cdd:PRK03918 421 IKELKKAIEELKKAKGKCPVCGREL-TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELekVLKKESELIKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 700 AQSSQLHELENH-STHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQ---ELVLQKERIQVLEDQRTLQTKIL 775
Cdd:PRK03918 500 ELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKEL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 776 EEDLEQIKHSLRERSQELasqwqlvhERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQG 855
Cdd:PRK03918 580 EELGFESVEELEERLKEL--------EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 856 LHRKVGETslllTHREQEtatlQQHLQEAKEQGELREQV--LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKlK 933
Cdd:PRK03918 652 LEKKYSEE----EYEELR----EEYLELSRELAGLRAELeeLEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-R 722
|
570
....*....|....*...
gi 1907135542 934 TSALQAALEQAHATLKER 951
Cdd:PRK03918 723 VEELREKVKKYKALLKER 740
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1006-1302 |
5.66e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.98 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1006 EQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEaLQEALSKAQAALQEKEQSLLEQAELS 1085
Cdd:PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1086 HTLEASTAALQATLDTCQASARQLEEALriREGEIQAQALQHHEVTQHL--QQELCQKKEELRQLLEkagarrsqenGIQ 1163
Cdd:PRK11281 152 VSLQTQPERAQAALYANSQRLQQIRNLL--KGGKVGGKALRPSQRVLLQaeQALLNAQNDLQRKSLE----------GNT 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1164 EKQSLEQERQEetrrlleslkELQLTVAQREEEILMLREASSPRHRALpAEKPAlqplpaqQELERLQTALRQTEAREIe 1243
Cdd:PRK11281 220 QLQDLLQKQRD----------YLTARIQRLEHQLQLLQEAINSKRLTL-SEKTV-------QEAQSQDEAARIQANPLV- 280
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907135542 1244 wrekAQDLALSLAQSKASISSLQEITMFLQAS-----VLERESEQQR--------LQEELVLSRQALEEQQS 1302
Cdd:PRK11281 281 ----AQELEINLQLSQRLLKATEKLNTLTQQNlrvknWLDRLTQSERnikeqisvLKGSLLLSRILYQQQQA 348
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
960-1267 |
7.74e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 960 EQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTeqeQELAAL 1039
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELN---GELSAA 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1040 RAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLleQAELShtleastaALQATLDTCQASARQLEEALRIREge 1119
Cdd:pfam12128 314 DAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSW--QSELE--------NLEERLKALTGKHQDVTAKYNRRR-- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1120 iQAQALQHHEVTQHLQQELCQKKEEL-RQLLEKAGARRSQENGIQEK-QSLEQERQEETRRLLESLKEL--QLTVAQREE 1195
Cdd:pfam12128 382 -SKIKEQNNRDIAGIKDKLAKIREARdRQLAVAEDDLQALESELREQlEAGKLEFNEEEYRLKSRLGELklRLNQATATP 460
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907135542 1196 EILMLREASSPRHRALPAEKPAlqplpAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQE 1267
Cdd:pfam12128 461 ELLLQLENFDERIERAREEQEA-----ANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELEL 527
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
661-1381 |
7.82e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 7.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 661 HKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHEL--------ENHSTHLAKELQERDQEVTSQRQQ 732
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLERS 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 733 IDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTlQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSK 812
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE-EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 813 GQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELRE 892
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 893 Q---VLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVR-----R 964
Cdd:TIGR02169 469 QelyDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnR 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 965 LQ----EELEVEGRQVRALEEV---------LGDLRAESRE----HEKAVL-----------------------ALQQRC 1004
Cdd:TIGR02169 549 LNnvvvEDDAVAKEAIELLKRRkagratflpLNKMRDERRDlsilSEDGVIgfavdlvefdpkyepafkyvfgdTLVVED 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1005 AEQAQEHEAEAR--TLQDSWLQAQATLT-------EQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKE 1075
Cdd:TIGR02169 629 IEAARRLMGKYRmvTLEGELFEKSGAMTggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1076 QSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQqELCQKKEELRQLLEKAGAR 1155
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE-ELEEDLHKLEEALNDLEAR 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1156 RSQEnGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEKpaLQPLPAQQELERLQTALR 1235
Cdd:TIGR02169 788 LSHS-RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK--EQIKSIEKEIENLNGKKE 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1236 QTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQSggphstSRADQGP 1315
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE------ELSEIED 938
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1316 KVGQGSQSGEVETEPSPGVEEKERLTQRLERL--------------QQAVAELEVDRSKLQCHNAQLRTALEQVERERRK 1381
Cdd:TIGR02169 939 PKGEDEEIPEEELSLEDVQAELQRVEEEIRALepvnmlaiqeyeevLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
680-1403 |
9.35e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 9.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 680 QRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQ------ERDQEVTSQRQQIDELQKQQEQLAQALERKGQE 753
Cdd:COG3096 290 LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQaasdhlNLVQTALRQQEKIERYQEDLEELTERLEEQEEV 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 754 LVLQKERIQVLEDQRTLQtkilEEDLEQIKHSLRERSQEL------ASQWQLVHERADDGKS----PSKGQRGSLEHLkL 823
Cdd:COG3096 370 VEEAAEQLAEAEARLEAA----EEEVDSLKSQLADYQQALdvqqtrAIQYQQAVQALEKARAlcglPDLTPENAEDYL-A 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 824 ILRDKEKEVECQ----QERIQELQGHMGQLEQQLQGLHRKVGETSlllthREQETATLQQHLQEAKEQGEL--REQVLQG 897
Cdd:COG3096 445 AFRAKEQQATEEvlelEQKLSVADAARRQFEKAYELVCKIAGEVE-----RSQAWQTARELLRRYRSQQALaqRLQQLRA 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 898 QLEEAQRDLAQRdHELETLRQEKQQTQDQE-------ESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 970
Cdd:COG3096 520 QLAELEQRLRQQ-QNAERLLEEFCQRIGQQldaaeelEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 971 VEGRQVRALEEVLGDLRAESREHEKAVLALQQrCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAenqysrrqe 1050
Cdd:COG3096 599 ARAPAWLAAQDALERLREQSGEALADSQEVTA-AMQQLLEREREATVERDELAARKQALESQIERLSQPGG--------- 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1051 eAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALqaTLDTCQASARQLE------EALRIREGEIQAQA 1124
Cdd:COG3096 669 -AEDPRLLALAERLGGVLLSEIYDDVTLEDAPYFSALYGPARHAI--VVPDLSAVKEQLAgledcpEDLYLIEGDPDSFD 745
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1125 LQHHEVTQhLQQELCQKKEElRQLL------EKAGARRSQENGIQEkqsLEQERQEETRRLLESLKELQLTvaQREEEIL 1198
Cdd:COG3096 746 DSVFDAEE-LEDAVVVKLSD-RQWRysrfpeVPLFGRAAREKRLEE---LRAERDELAEQYAKASFDVQKL--QRLHQAF 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1199 mlrEASSPRHRALpaekpALQPLPAQqELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEitMFLQASVLE 1278
Cdd:COG3096 819 ---SQFVGGHLAV-----AFAPDPEA-ELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1279 RESEQQR---LQEELVLSRQALEEQQSGGPHSTSRADQGPKVGQGSQSGE-VETEPSPGVEEKERLTQRLERLQQAVAEL 1354
Cdd:COG3096 888 DETLADRleeLREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEqLQADYLQAKEQQRRLKQQIFALSEVVQRR 967
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907135542 1355 E----VDRSKLQCHNA----QLRTALEQVERERRKLkRDSVRASRAGSLEARETMTS 1403
Cdd:COG3096 968 PhfsyEDAVGLLGENSdlneKLRARLEQAEEARREA-REQLRQAQAQYSQYNQVLAS 1023
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
333-545 |
1.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 333 EAVALALQKLHQDVWKARQARDDLRDQVQKLvqrltdteAQKSQVHSELQDLQRQLSQSQEEKSKW-----EGRQNSLES 407
Cdd:COG4913 224 FEAADALVEHFDDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 408 ELRDLHETAASLQSRLRQAELQKMEAQNDRELLQAS--------KEKLSAQVEHLQAcvaEAQAQADAAAVLEEDLRTAR 479
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLER---ELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907135542 480 SALKLKNEELESERERAQALQEQGElkvAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQR 545
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALE---EELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
848-1076 |
1.05e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 848 QLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELRE---QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQ 924
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 925 DQEESMklkTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRC 1004
Cdd:COG4942 104 EELAEL---LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907135542 1005 AEQAQEHEaeartlqdswlQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQ 1076
Cdd:COG4942 181 AELEEERA-----------ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
716-1165 |
1.93e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 716 AKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERiqvledqrtlqTKILEEDLEQIKHSLRERSQELAS 795
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEA-----------ESDLEQDYQAASDHLNLVQTALRQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 796 QWQLvhERAddgkspskgqRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLThrEQETA 875
Cdd:PRK04863 347 QEKI--ERY----------QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD--VQQTR 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 876 TLQ-QHLQEAKEQGelreqvlQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAAL---EQAHATLKER 951
Cdd:PRK04863 413 AIQyQQAVQALERA-------KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHsqfEQAYQLVRKI 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 952 QGELEehREQVRRLQEELEVEGRQVRALEEVLGDLRAESREhekavlaLQQRCAEQAQeheaeARTLQDSWLQAQATLTE 1031
Cdd:PRK04863 486 AGEVS--RSEAWDVARELLRRLREQRHLAEQLQQLRMRLSE-------LEQRLRQQQR-----AERLLAEFCKRLGKNLD 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1032 QEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEE 1111
Cdd:PRK04863 552 DEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTE 631
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907135542 1112 AlriregeIQAQALQHHEVTQ---HLQQELCQKKEELRQLLEKAGARRSQENGIQEK 1165
Cdd:PRK04863 632 Y-------MQQLLERERELTVerdELAARKQALDEEIERLSQPGGSEDPRLNALAER 681
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
471-646 |
2.17e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 471 LEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKA 550
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 551 ALELLSLDLKKRSR----EVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLE 626
Cdd:COG4942 105 ELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180
....*....|....*....|
gi 1907135542 627 QKAQVIESQRGQIQDLKKQL 646
Cdd:COG4942 185 EERAALEALKAERQKLLARL 204
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
877-1121 |
2.60e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 877 LQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEEsmklkTSALQAALEQAHATLKERQGELE 956
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEE-----AKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 957 EHREQVRRLQEELEVEGRQVRALEEvlgdlraesrehEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQEL 1036
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQ------------SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1037 AALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIR 1116
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALT 384
|
....*
gi 1907135542 1117 EGEIQ 1121
Cdd:COG3206 385 VGNVR 389
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
331-550 |
2.66e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.67 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 331 SPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQL-SQSQEEKSKWEGRQnsLESEL 409
Cdd:PRK11281 53 LLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNdEETRETLSTLSLRQ--LESRL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 410 RDLHETAASLQSRLRQAELQKMEAQNDRELLQASkekLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSA----LKLK 485
Cdd:PRK11281 131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA---LYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAeqalLNAQ 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907135542 486 NE----ELESERERAQALQEQGELKVAQGKALQENLALLaQTLSNREREVETlQAEVQELEKQREMQKA 550
Cdd:PRK11281 208 NDlqrkSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLL-QEAINSKRLTLS-EKTVQEAQSQDEAARI 274
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
356-788 |
2.74e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 356 LRDQVQKLVQRLTDTEAQKSQVHSELQDLqrqLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRlrQAELQKMEAQN 435
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQL---KDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQL--KSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 436 DRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALK-LKNEELESERERAQALQEQGELKVAQGKALQ 514
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTnSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 515 ENLALLAQTlSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEhlpMAVQERE 594
Cdd:TIGR04523 385 EIKNLESQI-NDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKE---LIIKNLD 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 595 QKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKM----I 670
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEkeskI 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 671 TELEGQREMQRVALTHLtlDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERK 750
Cdd:TIGR04523 541 SDLEDELNKDDFELKKE--NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
410 420 430
....*....|....*....|....*....|....*...
gi 1907135542 751 GQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRE 788
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
515-1075 |
3.03e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 515 ENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALE-------LLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLP 587
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEevlreinEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 588 MAVQEREQKLSVQRDQIRELENDREaqrsvlehqllDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQ 667
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIE-----------ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 668 KMITELEGQREmqrvalthltlDLEERSQELQAQSSQLHELENHSTHLAK---ELQERDQEVTSQRQQIDELQKQQEQLA 744
Cdd:PRK03918 314 KRLSRLEEEIN-----------GIEERIKELEEKEERLEELKKKLKELEKrleELEERHELYEEAKAKKEELERLKKRLT 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 745 ----QALERKGQELVLQKERIQvlEDQRTLQTKILEedLEQIKHSLRERSQELASQwqlvheradDGKSPSKGQRGSLEH 820
Cdd:PRK03918 383 gltpEKLEKELEELEKAKEEIE--EEISKITARIGE--LKKEIKELKKAIEELKKA---------KGKCPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 821 LKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTH-------REQETATLQQHLQEAKEQGELREQ 893
Cdd:PRK03918 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeqlKELEEKLKKYNLEELEKKAEEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 894 VLQ--GQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQ----AHATLKERQGELEEH--------- 958
Cdd:PRK03918 530 LKEklIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfeSVEELEERLKELEPFyneylelkd 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 959 -REQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEqaQEHEaeartlqdswlQAQATLTEQEQELA 1037
Cdd:PRK03918 610 aEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE--EEYE-----------ELREEYLELSRELA 676
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907135542 1038 ALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKE 1075
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
336-796 |
3.26e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 336 ALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQ-EEKSKWEGRQNSLESELRDLHE 414
Cdd:COG4913 280 ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERER 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 415 TAASLQSRLRQAELQkmeaqndrelLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERE 494
Cdd:COG4913 360 RRARLEALLAALGLP----------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 495 RAQALqeqgelKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKA--------ALELL----------- 555
Cdd:COG4913 430 SLERR------KSNIPARLLALRDALAEALGLDEAELPFVGELIEVRPEEERWRGAiervlggfALTLLvppehyaaalr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 556 ---SLDLKKR--SREVDLQQEQIQELEQ--------------------------------CRSV--LEHLPMAV------ 590
Cdd:COG4913 504 wvnRLHLRGRlvYERVRTGLPDPERPRLdpdslagkldfkphpfrawleaelgrrfdyvcVDSPeeLRRHPRAItragqv 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 591 ---QEREQKlsvqRDQIRELEN-----DREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHH- 661
Cdd:COG4913 584 kgnGTRHEK----DDRRRIRSRyvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWd 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 662 --KVESQQKMITELEGQREmqrvalthltlDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQ 739
Cdd:COG4913 660 eiDVASAEREIAELEAELE-----------RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907135542 740 QEQLAQALERKGQELVLqkERIQVLEDQrtLQTKILEEDLEQIKHSLRERSQELASQ 796
Cdd:COG4913 729 LDELQDRLEAAEDLARL--ELRALLEER--FAAALGDAVERELRENLEERIDALRAR 781
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-887 |
3.74e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 138 ECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVARE 217
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 218 AQLLEELEASRVAEQQLRASLwAQEAKATQLQLQLRSTESQLEALVAeQQPENQAQAQLASLCSVLQQAlgSACESRPEL 297
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEA-ARKAEEVRKAEELRKAEDARKAEAA-RKAEEERKAEEARKAEDAKKA--EAVKKAEEA 1235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 298 RgggdsaptlwgpdPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDdlRDQVQKLVQRLTDTEAQKSqv 377
Cdd:PTZ00121 1236 K-------------KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK--ADELKKAEEKKKADEAKKA-- 1298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 378 hselqdlqrqlsqsqEEKSKWEgrqnslesELRDLHETAaslqsrlRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAC 457
Cdd:PTZ00121 1299 ---------------EEKKKAD--------EAKKKAEEA-------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 458 VAEAQAQADAAAVLEEDLRTAR----------SALKLKNEEL----------ESERERAQALQEQGELKV----AQGKAL 513
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEKAEAAEkkkeeakkkaDAAKKKAEEKkkadeakkkaEEDKKKADELKKAAAAKKkadeAKKKAE 1428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 514 QENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLD-LKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQE 592
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADeAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 593 REQKlsvqrDQIRELENDREAQ--RSVLEHQLLDLEQKAQviesQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMI 670
Cdd:PTZ00121 1509 KKKA-----DEAKKAEEAKKADeaKKAEEAKKADEAKKAE----EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 671 TELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERk 750
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE- 1658
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 751 gQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEK 830
Cdd:PTZ00121 1659 -NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907135542 831 EVECQQERIQELQGHMGQlEQQLQglHRKVGETSLLLTHREQETATLQQHLQEAKEQ 887
Cdd:PTZ00121 1738 EAEEDKKKAEEAKKDEEE-KKKIA--HLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
829-1083 |
4.08e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 829 EKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLL-THREQETATLQQHLQEAKEQGEL--REQVLQGQLEEAQRD 905
Cdd:PRK04863 850 ERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLAdETLADRVEEIREQLDEAEEAKRFvqQHGNALAQLEPIVSV 929
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 906 LAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALE-QAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLG 984
Cdd:PRK04863 930 LQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQrRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLR 1009
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 985 DLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQ----EQELAALRAENQYSRRQEEAAVSQAEAL 1060
Cdd:PRK04863 1010 QAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERararRDELHARLSANRSRRNQLEKQLTFCEAE 1089
|
250 260
....*....|....*....|...
gi 1907135542 1061 QEALSKAQAALQEKEQSLLEQAE 1083
Cdd:PRK04863 1090 MDNLTKKLRKLERDYHEMREQVV 1112
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
893-1124 |
4.24e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 893 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVE 972
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 973 GRQVRALEEVLG-----------DLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRA 1041
Cdd:COG3883 99 GGSVSYLDVLLGsesfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1042 ENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQ 1121
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAA 258
|
...
gi 1907135542 1122 AQA 1124
Cdd:COG3883 259 AGS 261
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
818-1038 |
4.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 818 LEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQG 897
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 898 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQahatLKERQGELEEHREQVRRLQEELEVEGRQVR 977
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907135542 978 ALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAA 1038
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
665-893 |
4.49e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 665 SQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLA 744
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 745 QALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLrersQELASQWQLVHERADDGKSPSKGQRGSLEHLKLI 824
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL----QYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907135542 825 LRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQ 893
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
353-975 |
4.99e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 353 RDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELR----DLHETAASLQSRL----- 423
Cdd:pfam15921 305 QEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARterdQFSQESGNLDDQLqklla 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 424 ----RQAELQKMEAQNDRelLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRT--------ARSALKLKNEELEs 491
Cdd:pfam15921 385 dlhkREKELSLEKEQNKR--LWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSecqgqmerQMAAIQGKNESLE- 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 492 ereRAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKqremqkaALELLSLDLKKRSREVDlqqe 571
Cdd:pfam15921 462 ---KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER-------AIEATNAEITKLRSRVD---- 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 572 qiqeleqcrsvlehlpMAVQEReQKLSVQRDQIRELENDREAQRsvlehqlLDLEQKAQVIESQRGQIQDLKKQLGTLEC 651
Cdd:pfam15921 528 ----------------LKLQEL-QHLKNEGDHLRNVQTECEALK-------LQMAEKDKVIEILRQQIENMTQLVGQHGR 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 652 LALELeeshhKVESQQkmiteLEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQ 731
Cdd:pfam15921 584 TAGAM-----QVEKAQ-----LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQ 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 732 qidelqkqqeqlaqalerkgqelvlqkERIQVLEDQRTLQTKI--LEEDLEQIKHSLRERSQELASqwqlvheraddgks 809
Cdd:pfam15921 654 ---------------------------ERDQLLNEVKTSRNELnsLSEDYEVLKRNFRNKSEEMET-------------- 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 810 pskgqrgSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVgetslllTHREQETATLQ---QHLQEAKE 886
Cdd:pfam15921 693 -------TTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI-------TAKRGQIDALQskiQFLEEAMT 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 887 QGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELE-EHREQVR-R 964
Cdd:pfam15921 759 NANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQrQEQESVRlK 838
|
650
....*....|.
gi 1907135542 965 LQEELEVEGRQ 975
Cdd:pfam15921 839 LQHTLDVKELQ 849
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
898-1301 |
5.15e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 898 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLK--ERQGELEEHREQVRRLQEELEVEGRQ 975
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 976 VRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVS 1055
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1056 QAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQhhEVTQHLQ 1135
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE--ELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1136 QELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEK 1215
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1216 PALQPLPAQQELERLQTALRQ--TEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLS 1293
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEEllGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
....*...
gi 1907135542 1294 RQALEEQQ 1301
Cdd:COG4717 473 ELLQELEE 480
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
521-760 |
5.48e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 521 AQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEqiqeleqcrsvlehlpmAVQEREQKLSVQ 600
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-----------------RIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 601 RDQIRELENDREAQRSVLEHQLLDLEQKAQVIEsQRGQIQDLKKQLGTLECLALELEESHHK--VESQQKMITELEGQRE 678
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALY-RLGRQPPLALLLSPEDFLDAVRRLQYLKylAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 679 MQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQK 758
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
..
gi 1907135542 759 ER 760
Cdd:COG4942 241 ER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
350-950 |
5.93e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 5.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 350 RQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQ 429
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNK 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 430 KMEAQNDRELLQASKEK---LSAQVEHLQacvaeaqaqaDAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELK 506
Cdd:TIGR04523 196 LLKLELLLSNLKKKIQKnksLESQISELK----------KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 507 VAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREmqkaalELLSLDLKKRSREVDLQqeqiqeleqcrsvLEHL 586
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE------QDWNKELKSELKNQEKK-------------LEEI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 587 PMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEEshhKVESQ 666
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLES---KIQNQ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 667 QKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQA 746
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 747 LERKGQELVLQKERIQVLedqrTLQTKILEE---DLEQIKHSLRERSQELASQwqlvheraddgKSPSKGQRGSLEHlKL 823
Cdd:TIGR04523 484 LEQKQKELKSKEKELKKL----NEEKKELEEkvkDLTKKISSLKEKIEKLESE-----------KKEKESKISDLED-EL 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 824 ILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKvgetslllthreqetatlQQHLQEAKEQGELREQVLQGQLEEAQ 903
Cdd:TIGR04523 548 NKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKK------------------QEEKQELIDQKEKEKKDLIKEIEEKE 609
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1907135542 904 RDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKE 950
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
348-726 |
6.22e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 348 KARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAE 427
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 428 LQKMEAQndrELLQASKEKLSAQVEHLQACVAEAQAQADAAavleEDLRTARSALKLKNEELESERERAQALQE---QGE 504
Cdd:PRK02224 440 ERVEEAE---ALLEAGKCPECGQPVEGSPHVETIEEDRERV----EELEAELEDLEEEVEEVEERLERAEDLVEaedRIE 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 505 LKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLE 584
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 585 HLPMAVQERE------QKLSVQRDQIRELENDREAQRSVLEHQLLDLEQK--AQVIESQRGQIQDLKKQLGTLECLALEL 656
Cdd:PRK02224 593 RIRTLLAAIAdaedeiERLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLDEL 672
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 657 EESHHKVESQQKMITELEGQREMQRVALTHLtldlEERSQELQAQSSQLHELENHSTHLAKELQERDQEV 726
Cdd:PRK02224 673 REERDDLQAEIGAVENELEELEELRERREAL----ENRVEALEALYDEAEELESMYGDLRAELRQRNVET 738
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2-805 |
6.26e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 2 EAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQ 81
Cdd:pfam02463 193 EELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 82 ELKEAAQQhrddlaafQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQ-ECSRIQKELEKE-----NASLAL 155
Cdd:pfam02463 273 ENKEEEKE--------KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEkEKKKAEKELKKEkeeieELEKEL 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 156 SLVEKEKRLLILQEADSVRQQELSSLRQD-------IQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEEL---- 224
Cdd:pfam02463 345 KELEIKREAEEEEEEELEKLQEKLEQLEEellakkkLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLlkee 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 225 ---EASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGG 301
Cdd:pfam02463 425 kkeELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 302 DSAPTLWGPDPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSEL 381
Cdd:pfam02463 505 ARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLI 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 382 QDLQRQLSQSQEEKSKWEGRQNSLesELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEA 461
Cdd:pfam02463 585 PKLKLPLKSIAVLEIDPILNLAQL--DKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKS 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 462 QAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQgkALQENLALLAQTLSNREREVETLQAEVQEL 541
Cdd:pfam02463 663 EVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE--ELKKLKLEAEELLADRVQEAQDKINEELKL 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 542 EKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQ 621
Cdd:pfam02463 741 LKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 622 LLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMI-TELEGQREMQRVALTHLTLDLEERSQELQA 700
Cdd:pfam02463 821 QLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLqELLLKEEELEEQKLKDELESKEEKEKEEKK 900
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 701 QSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQE-LVLQKERIQVLEDQRTLQTKILEEDL 779
Cdd:pfam02463 901 ELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENnKEEEEERNKRLLLAKEELGKVNLMAI 980
|
810 820
....*....|....*....|....*.
gi 1907135542 780 EQIKHSLRERSQELASQWQLVHERAD 805
Cdd:pfam02463 981 EEFEEKEERYNKDELEKERLEEEKKK 1006
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
687-944 |
7.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 687 LTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLED 766
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 767 QRtlqtKILEEDLEQIKHSLRERSQELAsqwqlvheraddgkspskgQRGSLEHLKLILRDkeKEVECQQERIQELQGHM 846
Cdd:COG4942 91 EI----AELRAELEAQKEELAELLRALY-------------------RLGRQPPLALLLSP--EDFLDAVRRLQYLKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 847 GQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQ 926
Cdd:COG4942 146 PARREQAEELRADLAELAALRAELEAERAELEALLAELEEE----RAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|....*...
gi 1907135542 927 EESMKLKTSALQAALEQA 944
Cdd:COG4942 222 AEELEALIARLEAEAAAA 239
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
41-563 |
7.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 7.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 41 QKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQ--ELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAH 118
Cdd:PTZ00121 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 119 DDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDiqEAQEGQRELGVQ 198
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD--EAKKKAEEKKKA 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 199 VELLRQEVKEKEADFVAREAQLLEELE-ASRVAEQQLRASLW---AQEAKATQlQLQLRSTESQLEALVAEQQPENQAQA 274
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEeAKKKAEEAKKADEAkkkAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 275 QLASLCSVLQQA--LGSACESRP--ELRGGGDSAPTlwgpdPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKAR 350
Cdd:PTZ00121 1513 DEAKKAEEAKKAdeAKKAEEAKKadEAKKAEEKKKA-----DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 351 QARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHET-AASLQSRLRQAELQ 429
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELkKAEEENKIKAAEEA 1667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 430 KMEAQNDR--ELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSaLKLKNEELESERERAQALQEQGELKV 507
Cdd:PTZ00121 1668 KKAEEDKKkaEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE-LKKAEEENKIKAEEAKKEAEEDKKKA 1746
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907135542 508 AQGKALQENLALLAQTLSNREREVETLQAEV-----QELEKQREMQKAALELLSLDLKKRS 563
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKeavieEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
788-1003 |
7.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 7.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 788 ERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLL 867
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 868 THREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLA-------QRDHELETLRQEKQQTQDQEESMKLKTSALQAA 940
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylapARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907135542 941 LEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQR 1003
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
858-1199 |
8.64e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 8.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 858 RKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSAL 937
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 938 QAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEART 1017
Cdd:COG4372 86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1018 LQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQA 1097
Cdd:COG4372 166 LAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELE 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1098 TLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETR 1177
Cdd:COG4372 246 EDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELA 325
|
330 340
....*....|....*....|..
gi 1907135542 1178 RLLESLKELQLTVAQREEEILM 1199
Cdd:COG4372 326 KKLELALAILLAELADLLQLLL 347
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1005-1197 |
1.13e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1005 AEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQsllEQAEL 1084
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK---EIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1085 SHTLEASTAALQATLDTCQASARQLEEALRIREGEIqAQALQHHEVTQHLQQELCQKKEELRQLLEK-AGARRSQENGIQ 1163
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDF-LDAVRRLQYLKYLAPARREQAEELRADLAElAALRAELEAERA 174
|
170 180 190
....*....|....*....|....*....|....
gi 1907135542 1164 EKQSLEQERQEETRRLLESLKELQLTVAQREEEI 1197
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKEL 208
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
372-1122 |
1.33e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 372 AQKSQVHSELQDLQ--RQLSQSQEEKSKWEGRQNSLESelrdLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSA 449
Cdd:pfam12128 218 LNRQQVEHWIRDIQaiAGIMKIRPEFTKLQQEFNTLES----AELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 450 QVEhlqacvaeaQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGelkVAQGKALQENLALLAQTLSNRER 529
Cdd:pfam12128 294 TLD---------DQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAD---IETAAADQEQLPSWQSELENLEE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 530 EVETLQAEVQELEK--QREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHL--PMAVQEREQKLSVQRDQIR 605
Cdd:pfam12128 362 RLKALTGKHQDVTAkyNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALesELREQLEAGKLEFNEEEYR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 606 -----ELENDREAQRSVLEHQLLDLEQKAQVIESQRgqiqdlkkqlgtleclaLELEESHHKVESQQKMITELEGQREMQ 680
Cdd:pfam12128 442 lksrlGELKLRLNQATATPELLLQLENFDERIERAR-----------------EEQEAANAEVERLQSELRQARKRRDQA 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 681 RVALTHLTLDLEERSQELQAQSSQLHElENHSTH--LAKELQERDQevtSQRQQIDELQKQQEQLAQAL--ERKGQELVL 756
Cdd:pfam12128 505 SEALRQASRRLEERQSALDELELQLFP-QAGTLLhfLRKEAPDWEQ---SIGKVISPELLHRTDLDPEVwdGSVGGELNL 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 757 QKERIQVledqrtlqTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQ 836
Cdd:pfam12128 581 YGVKLDL--------KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNAR 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 837 ERIQELQGHMGQLEQQLQglhrkvgetslllTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLaqrdheLETL 916
Cdd:pfam12128 653 LDLRRLFDEKQSEKDKKN-------------KALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQK------REAR 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 917 RQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQvrrlqeelEVEGRQVRalEEVLGDLRAESREHEKA 996
Cdd:pfam12128 714 TEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKR--------DLASLGVD--PDVIAKLKREIRTLERK 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 997 VlalqQRCAEQAQEHEAEARTLQDSWLQAQATLTEQ--EQELAALRAENQYSRRQEEAAVSQAEALQE--ALSKAQAALQ 1072
Cdd:pfam12128 784 I----ERIAVRRQEVLRYFDWYQETWLQRRPRLATQlsNIERAISELQQQLARLIADTKLRRAKLEMErkASEKQQVRLS 859
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1073 EKEQSLLEQAELSHTLEASTAALQATLDTCQaSARQLEEALRIREGEIQA 1122
Cdd:pfam12128 860 ENLRGLRCEMSKLATLKEDANSEQAQGSIGE-RLAQLEDLKLKRDYLSES 908
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
867-1301 |
1.46e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 42.97 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 867 LTHREQETATLQQHLQEAKE--QGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEEsmkLKTSALQAALEQA 944
Cdd:COG5278 78 LEPYEEARAEIDELLAELRSltADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALAL---VRSGEGKALMDEI 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 945 HATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQ 1024
Cdd:COG5278 155 RARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALEL 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1025 AQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQA 1104
Cdd:COG5278 235 LAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAA 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1105 SARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLK 1184
Cdd:COG5278 315 AAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1185 ELQLTVAQREEEILMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISS 1264
Cdd:COG5278 395 IAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAAL 474
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907135542 1265 LQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQ 1301
Cdd:COG5278 475 AALAAAAAALAEAEAAAALAAAAALSLALALAALLLA 511
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
176-390 |
1.72e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 176 QELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFV-AREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRS 254
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLeAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 255 TE-SQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGgdsaptlwgpdpdqngasrlFKRWSLPTALSPE 333
Cdd:COG4913 335 NGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE--------------------FAALRAEAAALLE 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907135542 334 AVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQ 390
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
825-1083 |
1.75e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 43.06 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 825 LRDKEKEVECQQERIQELQGHMGQLEQQLQGlhrKVGETSLLLTHREQETATLQQHLQEAKEQGELR-EQVLQGQLEEAQ 903
Cdd:TIGR00927 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEG---ENGEESGGEAEQEGETETKGENESEGEIPAERKgEQEGEGEIEAKE 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 904 RDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATlkERQGELEEHREQVRRLQEELEVEGRQVRALEEVl 983
Cdd:TIGR00927 704 ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEG--EAEGKHEVETEGDRKETEHEGETEAEGKEDEDE- 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 984 GDLRA-ESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQE 1062
Cdd:TIGR00927 781 GEIQAgEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDG 860
|
250 260
....*....|....*....|.
gi 1907135542 1063 ALSKAQAALQEKEQSLLEQAE 1083
Cdd:TIGR00927 861 GDSEEEEEEEEEEEEEEEEEE 881
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
666-971 |
1.88e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 666 QQKMITELEGQREMQRVALTHLTLDLEERSQELQ-------AQSSQLHELENHSTHLAK-ELQERDQEVTSQRQQIDELQ 737
Cdd:pfam17380 280 HQKAVSERQQQEKFEKMEQERLRQEKEEKAREVErrrkleeAEKARQAEMDRQAAIYAEqERMAMERERELERIRQEERK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 738 KQQEQLAQalerkgQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGS 817
Cdd:pfam17380 360 RELERIRQ------EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 818 LEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHR----EQETATLQQHLQEAKE---QGEL 890
Cdd:pfam17380 434 QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRkraeEQRRKILEKELEERKQamiEEER 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 891 REQVLQGQLEEAQRDLAQRDHELETlRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 970
Cdd:pfam17380 514 KRKLLEKEMEERQKAIYEEERRREA-EEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
.
gi 1907135542 971 V 971
Cdd:pfam17380 593 A 593
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
891-1196 |
2.14e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 891 REQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 970
Cdd:pfam07888 28 RAELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 971 VEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQE 1050
Cdd:pfam07888 108 ASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEEL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1051 EAAVSQAEALQEALSKAQAA---LQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQH 1127
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQvlqLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQR 267
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1128 HEVTQHLQQELCQKKEELRQLLEKAGA-RRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEE 1196
Cdd:pfam07888 268 DRTQAELHQARLQAAQLTLQLADASLAlREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
711-1058 |
2.16e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 711 HSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERS 790
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 791 QELASQWQlvheraddgkspskgqrgslehlklilRDKEKEVECQQERIQELQghMGQLEQQlQGLHRKVGETSLLLTHR 870
Cdd:pfam17380 356 EERKRELE---------------------------RIRQEEIAMEISRMRELE--RLQMERQ-QKNERVRQELEAARKVK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 871 EQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKlktsaLQAALEQAHATLKE 950
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLR-----QQEEERKRKKLELE 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 951 RQGELEEHREQVRRLQEELEVEGRQVRALEEVLGD--LRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQAT 1028
Cdd:pfam17380 481 KEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRK 560
|
330 340 350
....*....|....*....|....*....|
gi 1907135542 1029 LTEQEQELAALRAENQYSRRQEEAAVSQAE 1058
Cdd:pfam17380 561 ATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
313-647 |
2.30e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 313 DQNGASRLFKRWSLPTALSPEAVALALQKlhQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQ 392
Cdd:COG4372 2 DRLGEKVGKARLSLFGLRPKTGILIAALS--EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 393 EEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAqaqadaaavlE 472
Cdd:COG4372 80 EELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAER----------E 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 473 EDLRTARSALKLKNEELES-ERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAA 551
Cdd:COG4372 150 EELKELEEQLESLQEELAAlEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 552 LELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQV 631
Cdd:COG4372 230 KLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSL 309
|
330
....*....|....*.
gi 1907135542 632 IESQRGQIQDLKKQLG 647
Cdd:COG4372 310 IGALEDALLAALLELA 325
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-225 |
2.63e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 2 EAIRAQREEERSQADSALyqmqLETEKERVSLLETLLRTQKELADASQQLERLR---QDMKIQKLKEQETTGMLQAQLQE 78
Cdd:TIGR02168 760 EAEIEELEERLEEAEEEL----AEAEAEIEELEAQIEQLKEELKALREALDELRaelTLLNEEAANLRERLESLERRIAA 835
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 79 TQQELKEAAQQHRD---DLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENaslal 155
Cdd:TIGR02168 836 TERRLEDLEEQIEElseDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR----- 910
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 156 slVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEgqrELGVQVELLRQEVKEKEADFVAREAQLLEELE 225
Cdd:TIGR02168 911 --SELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
693-933 |
2.79e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 693 ERSQELQAQSSQLHELEnhsthlakelqerdQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQT 772
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQ--------------QQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 773 KILEEDLEQIKHSLRERSQELA------SQWQLVHERADDGKS-PSKGQrgslehlklilrdkekEVECQQERIQELQGH 845
Cdd:PHA02562 244 LNLVMDIEDPSAALNKLNTAAAkikskiEQFQKVIKMYEKGGVcPTCTQ----------------QISEGPDRITKIKDK 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 846 MGQLEQQLQGLHRKVGEtsllLTHREQETATLQQHLQEAKEQGELREQVLQG----------QLEEAQRDLAQRDHELET 915
Cdd:PHA02562 308 LKELQHSLEKLDTAIDE----LEEIMDEFNEQSKKLLELKNKISTNKQSLITlvdkakkvkaAIEELQAEFVDNAEELAK 383
|
250
....*....|....*...
gi 1907135542 916 LRQEKQQTQDQEESMKLK 933
Cdd:PHA02562 384 LQDELDKIVKTKSELVKE 401
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
33-277 |
2.91e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 33 LLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQH---RDDLAAFQKDKLDLQKQVE 109
Cdd:COG4372 4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELeqlEEELEQARSELEQLEEELE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 110 DLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQ 189
Cdd:COG4372 84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 190 EGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPE 269
Cdd:COG4372 164 EELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALE 243
|
....*...
gi 1907135542 270 NQAQAQLA 277
Cdd:COG4372 244 LEEDKEEL 251
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
53-986 |
2.99e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 53 RLRQDMKIQKLKEQETTGMlqAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQK---QVEDLMSQLVAHDDSQRLVKEEI 129
Cdd:TIGR00606 232 QLESSREIVKSYENELDPL--KNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKdnsELELKMEKVFQGTDEQLNDLYHN 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 130 EEKV--KVAQECSRIQKELEKENaslalslveKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVK 207
Cdd:TIGR00606 310 HQRTvrEKERELVDCQRELEKLN---------KERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 208 EKEAD-FVAREAQLLEELEASRVAEQ-----QLRASLWAQEAKATQLQLQLRSTESQLEALVA-EQQPENQAQAQLASLC 280
Cdd:TIGR00606 381 GFERGpFSERQIKNFHTLVIERQEDEaktaaQLCADLQSKERLKQEQADEIRDEKKGLGRTIElKKEILEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 281 SVLQQALGSA---CESRPELRGGGDSAPTLwgpdpDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDlR 357
Cdd:TIGR00606 461 KELQQLEGSSdriLELDQELRKAERELSKA-----EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTT-R 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 358 DQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDR 437
Cdd:TIGR00606 535 TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNEL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 438 ELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLE---EDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQ 514
Cdd:TIGR00606 615 ESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEkssKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQ 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 515 ENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLqqeqiqeleqcrsvlehlpmaVQERE 594
Cdd:TIGR00606 695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPE---------------------LRNKL 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 595 QKLSVqrdQIRELENDREAQRSVLEhQLLDLEQKAQVIESQRGQIQDLKKQLgtleclalelEESHHKVESQQKMITELE 674
Cdd:TIGR00606 754 QKVNR---DIQRLKNDIEEQETLLG-TIMPEEESAKVCLTDVTIMERFQMEL----------KDVERKIAQQAAKLQGSD 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 675 GQREMQRValthltldleerSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQEL 754
Cdd:TIGR00606 820 LDRTVQQV------------NQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 755 VLQKERIQVLEDQRTLQTKILEED--LEQIKHSLRERSQELASQWQLVHERADDG----KSPSKGQRGSLEHLKLILRDK 828
Cdd:TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDspLETFLEKDQQEKEELISSKETSNKKAQDKvndiKEKVKNIHGYMKDIENKIQDG 967
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 829 EKEVECQQEriQELQGHMGQLEQQLQglHRKVGETSLLLTHREQETatlqQHLQEAKEQGELREQVLQGQLEEAQRDLAQ 908
Cdd:TIGR00606 968 KDDYLKQKE--TELNTVNAQLEECEK--HQEKINEDMRLMRQDIDT----QKIQERWLQDNLTLRKRENELKEVEEELKQ 1039
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 909 RDHELETLR--QEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHRE-QVRRLQEELEVEGRQVRALEEVLGD 985
Cdd:TIGR00606 1040 HLKEMGQMQvlQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREpQFRDAEEKYREMMIVMRTTELVNKD 1119
|
.
gi 1907135542 986 L 986
Cdd:TIGR00606 1120 L 1120
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
129-546 |
3.17e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 129 IEEKVKVAQECSRIQKELEKENASLalslVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRelgvqvelLRQEVKE 208
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRL----VEMARELAELNEAESDLEQDYQAASDHLNLVQTALR--------QQEKIER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 209 KEADFVAREAQLLEELEASRVAEQQLRASlwaqEAKATQLQLQLRSTESQLealvAEQQPENQAQAQLASLCSVLQQALg 288
Cdd:PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEEN----EARAEAAEEEVDELKSQL----ADYQQALDVQQTRAIQYQQAVQAL- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 289 sacesrpelrgggDSAPTLWG-PDPDQNGASRLFKRWslptALSPEAVALALQKLHQDVWKARQARDDLrDQVQKLVQRL 367
Cdd:PRK04863 424 -------------ERAKQLCGlPDLTADNAEDWLEEF----QAKEQEATEELLSLEQKLSVAQAAHSQF-EQAYQLVRKI 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 368 TDtEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLeSELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKL 447
Cdd:PRK04863 486 AG-EVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRL-SELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEEL 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 448 SAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNR 527
Cdd:PRK04863 564 EARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLEREREL 643
|
410
....*....|....*....
gi 1907135542 528 EREVETLQAEVQELEKQRE 546
Cdd:PRK04863 644 TVERDELAARKQALDEEIE 662
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
662-860 |
3.29e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 662 KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQE 741
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 742 QLAQALERKGQ----ELVLQKERIQVLEDQRTLQTKILEEDLEQIKhSLRERSQELASQWQLVHERADDGKSPSKGQRGS 817
Cdd:COG4942 108 ELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAE-ELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1907135542 818 LEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKV 860
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
487-1164 |
3.39e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 487 EELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREM-----QKAALELLSLDLKK 561
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERinrarKAAPLAAHIKAVTQ 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 562 RSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIEsqrgqiqd 641
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHT-------- 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 642 LKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQE 721
Cdd:TIGR00618 377 LTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 722 RDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEdLEQIKHSLRERSQELASQWQLVH 801
Cdd:TIGR00618 457 EKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIH-PNPARQDIDNPGPLTRRMQRGEQ 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 802 ERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERI---QELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQ 878
Cdd:TIGR00618 536 TYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSiltQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 879 QHLQEAKEQGELRE--QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQ--EESMKLKTSALQAALEQAHATLKERQGE 954
Cdd:TIGR00618 616 ALLRKLQPEQDLQDvrLHLQQCSQELALKLTALHALQLTLTQERVREHALsiRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 955 LEEHREQVRRLQEELEVEG---RQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTE 1031
Cdd:TIGR00618 696 KEMLAQCQTLLRELETHIEeydREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQ 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1032 QEQELAALRAENQYSRRQEEAAVSQaeaLQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLee 1111
Cdd:TIGR00618 776 TGAELSHLAAEIQFFNRLREEDTHL---LKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ-- 850
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1907135542 1112 alriregeiqaqaLQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQE 1164
Cdd:TIGR00618 851 -------------LLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| wac |
PHA02607 |
fibritin; Provisional |
662-864 |
3.39e-03 |
|
fibritin; Provisional
Pssm-ID: 177432 [Multi-domain] Cd Length: 454 Bit Score: 41.93 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 662 KVESQQKMITELEGQREMQRVAltHLTLDLEERSQELQAQS--------SQLHELENHSTHLAKELQERDQE-------- 725
Cdd:PHA02607 185 ALVDHGQRITELENDWADSDVG--QLTREVNDLRAELGPSSlatgepiyTRLNTLEDAITGINSDIDEIKTAigfpgtts 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 726 ----VTSQRQQIDELQKQQEQLAQALerkgqelvlqKERIQVLEdqrtlqTKILEEDLE-QIKHSLRERSQELASQWQLV 800
Cdd:PHA02607 263 iitrVTTLESNISSLNNQVNGPVTGI----------KPRLTAIE------TQIGSDSIPgSIKYRISNNTTDISDLNSIV 326
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907135542 801 heraddGKSPSKGQRGSLEHLKLILRDkEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETS 864
Cdd:PHA02607 327 ------GESSSDGLRGEVAWLNQRIGT-DSSPGSINGRLSVVETEVNQLTNSVQDLQVEIGNNS 383
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
861-998 |
3.47e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 861 GETSLLLTHREQETATLQQHLQEAkeQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQA- 939
Cdd:PRK12705 19 GVLVVLLKKRQRLAKEAERILQEA--QKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDAr 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907135542 940 ---------ALEQAHATLKERQGELEEHREQVRrlQEELEVEG-RQVRALEEVLGDLRAESrEHEKAVL 998
Cdd:PRK12705 97 aekldnlenQLEEREKALSARELELEELEKQLD--NELYRVAGlTPEQARKLLLKLLDAEL-EEEKAQR 162
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
684-1138 |
3.64e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 41.82 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 684 LTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQV 763
Cdd:COG5278 71 LTGDESFLEPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKAL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 764 LEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQ 843
Cdd:COG5278 151 MDEIRARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 844 GHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQT 923
Cdd:COG5278 231 ALELLAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAA 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 924 QDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQR 1003
Cdd:COG5278 311 AAAAAAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVEL 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1004 CAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAE 1083
Cdd:COG5278 391 EVLAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAA 470
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1907135542 1084 LSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQEL 1138
Cdd:COG5278 471 VAALAALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAALAAALAAAL 525
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
979-1301 |
4.07e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 979 LEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAE 1058
Cdd:COG4372 4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1059 ALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQAlqhhEVTQHLQQEL 1138
Cdd:COG4372 84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAERE----EELKELEEQL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1139 CQKKEELRQLlekagarrsqenGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEKPAL 1218
Cdd:COG4372 160 ESLQEELAAL------------EQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1219 QPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALE 1298
Cdd:COG4372 228 EAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAAL 307
|
...
gi 1907135542 1299 EQQ 1301
Cdd:COG4372 308 SLI 310
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
836-1057 |
4.11e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 836 QERIQELQGHMGQLEQQLQGLHRKVGETSLllthrEQETATLQQHLQEakeqgelreqvLQGQLEEAQRDLAQRDHELET 915
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDL-----SEEAKLLLQQLSE-----------LESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 916 LRQekqqtqdqeesmKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEK 995
Cdd:COG3206 245 LRA------------QLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ 312
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 996 AVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAE--------NQYSRRQEEAAVSQA 1057
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREvevarelyESLLQRLEEARLAEA 382
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
836-1175 |
4.48e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 836 QERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHELET 915
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEE----LEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 916 LRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEK 995
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQAL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 996 AVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKE 1075
Cdd:COG4372 186 DELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELEL 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1076 QSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGAR 1155
Cdd:COG4372 266 AILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQL 345
|
330 340
....*....|....*....|
gi 1907135542 1156 RSQENGIQEKQSLEQERQEE 1175
Cdd:COG4372 346 LLVGLLDNDVLELLSKGAEA 365
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
32-229 |
4.54e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 32 SLLETLLR-TQKELADASQQLERLRQDMKIQK--LKEQE-TTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQ 107
Cdd:PHA02562 170 KLNKDKIReLNQQIQTLDMKIDHIQQQIKTYNknIEEQRkKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 108 VEDLMSQLVAHDDSQRLVKEEIEEKVKVA------QECSRIQKELEKEN---ASLALSLVEKEKRLLILQEAdsvrQQEL 178
Cdd:PHA02562 250 IEDPSAALNKLNTAAAKIKSKIEQFQKVIkmyekgGVCPTCTQQISEGPdriTKIKDKLKELQHSLEKLDTA----IDEL 325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1907135542 179 SSLRQDIQEAQEGQRELGVQVELLRQEVK--EKEADFVAREaqlLEELEASRV 229
Cdd:PHA02562 326 EEIMDEFNEQSKKLLELKNKISTNKQSLItlVDKAKKVKAA---IEELQAEFV 375
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
27-233 |
4.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 27 EKERVSLLETLLRTQKELADASQQLERLR-QDMKIQKLKE----QETTGMLQAQLQETQQELkEAAQQHRDDLAAFQKDK 101
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQeRREALQRLAEyswdEIDVASAEREIAELEAEL-ERLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 102 LDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEadsVRQQELSSL 181
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA---VERELRENL 771
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907135542 182 RQDIQEAQEGQRELGVQVELLRQEVKEK----------EADFVAREAQLLEELEASRVAEQQ 233
Cdd:COG4913 772 EERIDALRARLNRAEEELERAMRAFNREwpaetadldaDLESLPEYLALLDRLEEDGLPEYE 833
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
351-493 |
5.14e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 351 QARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQK 430
Cdd:PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS 132
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907135542 431 MEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDL-RTARSALKLKNEELESER 493
Cdd:PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLgRRLNVALAQRVQELNRYR 196
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
76-766 |
5.18e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 76 LQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLAL 155
Cdd:TIGR00618 199 LTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 156 SLVEKEKRLLILQEADSVRQQElsSLRQDIQEAQEGQRELGVQVELLRQEVKEKEAdfVAREAQLLEELEASRVAEQQLR 235
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHIK--AVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA--HVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 236 ASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDSAPTLWGPDPDQN 315
Cdd:TIGR00618 355 IHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 316 GASRLFKRWSLPTALSPEAVALALQKLhQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQ--- 392
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHL-QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCihp 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 393 EEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLE 472
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 473 EDLRtarsalKLKNEELESERERAQALQEQgELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAAL 552
Cdd:TIGR00618 594 VRLQ------DLTEKLSEAEDMLACEQHAL-LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 553 --ELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQ 630
Cdd:TIGR00618 667 irVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 631 viESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREmQRVALTHLTLDLEERSQELQAQSSQLHELEN 710
Cdd:TIGR00618 747 --ELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNR-LREEDTHLLKTLEAEIGQEIPSDEDILNLQC 823
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907135542 711 HSthLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLED 766
Cdd:TIGR00618 824 ET--LVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
975-1214 |
5.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 975 QVRALEEVLGDLRAESREHEKAVLALQQRCAE---QAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEE 1051
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKAllkQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1052 AavsQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVT 1131
Cdd:COG4942 101 A---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 1132 QHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRAL 1211
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
...
gi 1907135542 1212 PAE 1214
Cdd:COG4942 258 PVS 260
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
907-1112 |
5.59e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 907 AQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDL 986
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 987 RAESREHEKAVLALQ------------------QRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRR 1048
Cdd:COG3883 92 ARALYRSGGSVSYLDvllgsesfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907135542 1049 QEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEA 1112
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
356-924 |
5.93e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 5.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 356 LRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQlSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQ--AELQKMEA 433
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ-QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQqhTLTQHIHT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 434 -QNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKA 512
Cdd:TIGR00618 384 lQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 513 LQENLALLAQTLSNrereVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQE 592
Cdd:TIGR00618 464 SAQSLKEREQQLQT----KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQ 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 593 REQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLgtleclalelEESHHKVESQQKMITE 672
Cdd:TIGR00618 540 LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT----------VRLQDLTEKLSEAEDM 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 673 LEGQREMQRVALTHlTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQK--QQEQLAQALERK 750
Cdd:TIGR00618 610 LACEQHALLRKLQP-EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELlaSRQLALQKMQSE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 751 GQELVLQKERI-QVLEDQRTLQTKILEED--LEQIKHSLRERSQELASQWQLVHERAddgKSPSKGQRGSLEHLKLILRD 827
Cdd:TIGR00618 689 KEQLTYWKEMLaQCQTLLRELETHIEEYDreFNEIENASSSLGSDLAAREDALNQSL---KELMHQARTVLKARTEAHFN 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 828 KEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLA 907
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLG 845
|
570
....*....|....*..
gi 1907135542 908 QRDHELETLRQEKQQTQ 924
Cdd:TIGR00618 846 EITHQLLKYEECSKQLA 862
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
85-290 |
6.02e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 85 EAAQQHRDDLAAFQKDKLDLQKQVEDLmSQLVAHDDSQRLVKEEIEEKVKVAQecsriqkelekenaslALSLVEKEKRL 164
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLRA----------------ALRLWFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 165 LILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADfvaREAQLLEELEASRVAEQQLRASLWAQEAK 244
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEAL 367
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907135542 245 ATQLQLQLRSTESQLEALVAEQQpenQAQAQLASLCSVLQQALGSA 290
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAA---ALLEALEEELEALEEALAEA 410
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
589-811 |
6.14e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 6.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 589 AVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQK 668
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 669 MITELEGQ--REMQRVALTHLTLDLEERSQELQAQSSQ--LHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLA 744
Cdd:COG4942 101 AQKEELAEllRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907135542 745 QALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPS 811
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
882-1014 |
6.23e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.16 E-value: 6.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 882 QEAKEQGELREQVLQGQLEeaqRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELE--EHR 959
Cdd:PTZ00491 666 AAARHQAELLEQEARGRLE---RQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEqaELR 742
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1907135542 960 EQVRRLQEELEVEGRQVRALEEVlgdlraesrEHEKAVLALQQRCAEQAQEHEAE 1014
Cdd:PTZ00491 743 AKALRIEAEAELEKLRKRQELEL---------EYEQAQNELEIAKAKELADIEAT 788
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
895-1042 |
7.25e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 895 LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHR--EQVRRLQEELEVE 972
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKEYEALQKEIESL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 973 GRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAE 1042
Cdd:COG1579 102 KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
356-561 |
8.11e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 356 LRDQVQKLVQRLTDTEAQKSQVHSELqDLQRQLSQSQEEKSK-----WEGRQNSLESELRDLHETAASLQSRLRQAELQK 430
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQI-KTYNKNIEEQRKKNGeniarKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907135542 431 MEAQNDRELLQASKEKLSAQVEHLQ-------------ACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQ 497
Cdd:PHA02562 251 EDPSAALNKLNTAAAKIKSKIEQFQkvikmyekggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMD 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907135542 498 ALQEQgelkVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKK 561
Cdd:PHA02562 331 EFNEQ----SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390
|
|
| |
