NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907094244|ref|XP_036014025|]
View 

TBC1 domain family member 7 isoform X1 [Mus musculus]

Protein Classification

TBC domain-containing protein( domain architecture ID 771)

TBC (Tre-2, BUB2p, Cdc16p) domain-containing protein may perform a GTP-activator activity on Rab-like GTPases

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RabGAP-TBC super family cl46302
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
 145-228 1.26e-05

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


The actual alignment was detected with superfamily member pfam00566:

Pssm-ID: 480642  Cd Length: 178  Bit Score: 44.55  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907094244 145 VEDSVDCYWisrCFVK-----QLNNKYRDALPQLPKA---FEQYLNLEDSRLLSHLKTCSAVSKLPYDLWFQRCFAGCLP 216
Cdd:pfam00566  66 YLDEEDAFW---CFVSllenyLLRDFYTPDFPGLKRDlyvFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFP 142

                          90
                  ....*....|..
gi 1907094244 217 ESSLQRVWDKVI 228
Cdd:pfam00566 143 LSTVLRIWDYFF 154
 
Name Accession Description Interval E-value
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
 145-228 1.26e-05

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 44.55  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907094244 145 VEDSVDCYWisrCFVK-----QLNNKYRDALPQLPKA---FEQYLNLEDSRLLSHLKTCSAVSKLPYDLWFQRCFAGCLP 216
Cdd:pfam00566  66 YLDEEDAFW---CFVSllenyLLRDFYTPDFPGLKRDlyvFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFP 142

                          90
                  ....*....|..
gi 1907094244 217 ESSLQRVWDKVI 228
Cdd:pfam00566 143 LSTVLRIWDYFF 154
 
Name Accession Description Interval E-value
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
 145-228 1.26e-05

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 44.55  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907094244 145 VEDSVDCYWisrCFVK-----QLNNKYRDALPQLPKA---FEQYLNLEDSRLLSHLKTCSAVSKLPYDLWFQRCFAGCLP 216
Cdd:pfam00566  66 YLDEEDAFW---CFVSllenyLLRDFYTPDFPGLKRDlyvFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFP 142

                          90
                  ....*....|..
gi 1907094244 217 ESSLQRVWDKVI 228
Cdd:pfam00566 143 LSTVLRIWDYFF 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH