|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
1796-1874 |
2.86e-27 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 106.52 E-value: 2.86e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907073931 1796 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKitmSRPFTKFRTAVRVVIAVLRLRFLVKKW 1874
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
170-756 |
6.75e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 6.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 170 QQELLERLREESAAKDRLA-LELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKS 248
Cdd:COG1196 219 KEELKELEAELLLLKLRELeAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 249 VLWNQKETLTNEAKEREAgspvlpahKDTALQEEVESLTrvqwESRKQSEKDRATLLSQMRVLESELEDQLvqhrgcAQL 328
Cdd:COG1196 299 RLEQDIARLEERRRELEE--------RLEELEEELAELE----EELEELEEELEELEEELEEAEEELEEAE------AEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 329 AEEVATLKQQLAALDKHLRSQRQFmDDQAAEREHEREEFQQEIQRLEGQLRQAARprppgpRDSQcvqLDEEVELLQEKL 408
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEEL-AEELLEALRAAAELAAQLEELEEAEEALLE------RLER---LEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 409 REKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD--LLLTTV 486
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 487 SRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALLqhENEVVHRRNSEIDELKSLIENLQEN-------------QRQLQK 553
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 554 DKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVF--GQLLADQAH 631
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSagGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 632 GHSQALEALQQRLQDAEEVAARHLAELEHcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAvnkwkvshslel 711
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEE-ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE------------ 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1907073931 712 eAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARLSHQLQVL 756
Cdd:COG1196 736 -ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
121-704 |
2.01e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 121 YQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEG 200
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 201 FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEksvLWNQKETLTNEAKEREagspvlpahkdtALQ 280
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE---LAEAEEALLEAEAELA------------EAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 281 EEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAER 360
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 361 EHEREEFQQEIQRLEGQLRQAARPRPPgprdsqcVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQ--------LLIQ 432
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEE-------LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavaVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 433 EEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKeilkqenmgdlLLTTVSRSGLDEAgcpmlpQGSSSRGPEAQP 512
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA-----------KAGRATFLPLDKI------RARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 513 DVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPkvhevsdpqagslh 592
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGG-------------- 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 593 selaclRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAM 672
Cdd:COG1196 661 ------SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590
....*....|....*....|....*....|..
gi 1907073931 673 ASQIQEFAATLKAKEAIIEQRDLEIDAVNKWK 704
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
122-645 |
2.53e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 2.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQEL-------LERLREESAAKDRLALELHTA 194
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdiarlEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 195 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAgspvlpah 274
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-------- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 275 KDTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMD 354
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 355 DQAAEREHEREEF---QQEIQRLEGQLRQAARPR--PPGPRDSQCVQLDEEVELLQEK-LREKLDGFNELVIKKDFADQQ 428
Cdd:COG1196 481 ELLEELAEAAARLlllLEAEADYEGFLEGVKAALllAGLRGLAGAVAVLIGVEAAYEAaLEAALAAALQNIVVEDDEVAA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 429 LLIQE--------------EEIKRLEETNASIQRQMVQ---------LQEELEKQKKSMEELKEKEILKQENMGDLLLTT 485
Cdd:COG1196 561 AAIEYlkaakagratflplDKIRARAALAAALARGAIGaavdlvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 486 VSRSGLDEAGCPM---LPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQL 562
Cdd:COG1196 641 TLAGRLREVTLEGeggSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 563 HEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELAcLRGEGLGGQALRSELQAAQAAKEVFGQ--LLADQAHghsqalEAL 640
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALE-ELPEPPDLEELERELERLEREIEALGPvnLLAIEEY------EEL 793
|
....*
gi 1907073931 641 QQRLQ 645
Cdd:COG1196 794 EERYD 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
140-791 |
3.96e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 3.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 140 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 219
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 220 QQLILELEDLRKQLQQAARELLTLKEEKSVLWNQ-----------KETLTNEAKEREAGSPVLPAHKDTALQEEVESLTR 288
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEierlearlerlEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 289 VQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEfq 368
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-- 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 369 QEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQR 448
Cdd:TIGR02168 526 SELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 449 QMVQLQEELEKQKKSM-------EELKEK-EILKQENMGDLLLT----TVSRSG-------------------LDEAGCP 497
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLlggvlvvDDLDNAlELAKKLRPGYRIVTldgdLVRPGGvitggsaktnssilerrreIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 498 MLPQGSSSRGPEAQPDVTERALLQHENEV-------------VHRRNSEIDELKSLIENLQENQRQLQK---DKAEEIEQ 561
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELeqlrkeleelsrqISALRKDLARLEAEVEQLEERIAQLSKeltELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 562 LHEVIEKLQSELSLMGPKVHEVSDPQAG-------------SLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLAD 628
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQlkeelkalrealdELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 629 QAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMA---SQIQEFAATLKAKEAIIEQRDLEIDAVNKWKV 705
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAllrSELEELSEELRELESKRSELRRELEELREKLA 925
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 706 SHSLELEAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARlshqlqvlyrpflKCRMQLDQHQPHVASIGCANPCAD 785
Cdd:TIGR02168 926 QLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE-------------EARRRLKRLENKIKELGPVNLAAI 992
|
....*.
gi 1907073931 786 DELEQE 791
Cdd:TIGR02168 993 EEYEEL 998
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
121-693 |
4.07e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 4.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 121 YQSLSTAVEGL-LEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRlalELHTAKGLLE 199
Cdd:TIGR02168 215 YKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 200 GFKVEKVDLQEALGKKEESEQQLI-------LELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLP 272
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 273 AHKDtALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEdQLVQHRgcAQLAEEVATLKQQLAALDKH-LRSQRQ 351
Cdd:TIGR02168 372 SRLE-ELEEQLETLRS----KVAQLELQIASLNNEIERLEARLE-RLEDRR--ERLQQEIEELLKKLEEAELKeLQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 352 FMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQcvQLDEEVELLqEKLREKLDGFNELVI-----KKDFAD 426
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA--QLQARLDSL-ERLQENLEGFSEGVKallknQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 427 -----QQLLIQEEEIKRLEETNASIQRQMVqLQEELEKQKKSMEELKEKEILKqenMGDLLLTTVSRSGLDEAGCPMLPQ 501
Cdd:TIGR02168 521 ilgvlSELISVDEGYEAAIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGR---VTFLPLDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 502 GSSSRG---------PEAQPDVTerALLQH--------------------------ENEVVHR----------------- 529
Cdd:TIGR02168 597 IEGFLGvakdlvkfdPKLRKALS--YLLGGvlvvddldnalelakklrpgyrivtlDGDLVRPggvitggsaktnssile 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 530 RNSEIDELKSLIENLQENQRQLQK---DKAEEIEQLHEVIEKLQSELSLMGPKVHEvsdpqagsLHSELACLRGEGLGGQ 606
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKalaELRKELEELEEELEQLRKELEELSRQISA--------LRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 607 ALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEhcvALREA--EVEAMASQIQEFAATLK 684
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK---ALREAldELRAELTLLNEEAANLR 823
|
....*....
gi 1907073931 685 AKEAIIEQR 693
Cdd:TIGR02168 824 ERLESLERR 832
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1297-1604 |
7.93e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 7.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1297 RRQVELLAYKVEqekcianELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAV 1376
Cdd:COG1196 224 ELEAELLLLKLR-------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1377 LDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKL------SLEKQLAQNNQLCVALKHERAA 1450
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEaeeeleEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1451 KDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQhERLLTEQLSRNSQEACARQETQVQHALLRKL 1530
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1531 KAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELE------IQRQRDEHKIEQLQRLVRELRWKEEV 1604
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYegflegVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
152-469 |
5.84e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 5.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 152 VEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQlilELEDLRK 231
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 232 QLQQAARELLTLKEEKSVLWNQKETLTNE-AKEREAgspvLPAHKDTALQEEVESLTRvqwESRKQsEKDRATLLSQMRV 310
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDlHKLEEA----LNDLEARLSHSRIPEIQA---ELSKL-EEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 311 LESELEDQlvqHRGCAQLAEEVATLKQQLAALDkhlrSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAarprppgpr 390
Cdd:TIGR02169 817 IEQKLNRL---TLEKEYLEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL--------- 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 391 DSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE------LEKQKKSM 464
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsLEDVQAEL 960
|
....*
gi 1907073931 465 EELKE 469
Cdd:TIGR02169 961 QRVEE 965
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
133-569 |
6.46e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 6.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 133 EMALDSSKQLEEARQLHRCVEREFRHRNE------EMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKV 206
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAaaelaaQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 207 DLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREA-GSPVLPAHKDTALQEEVES 285
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLLAGLRGLAGA 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 286 LTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR--------GCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQA 357
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIeylkaakaGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 358 AEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIK 437
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 438 RLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAgcpMLPQGSSSRGPEAQPDVTER 517
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL---EEEELLEEEALEELPEPPDL 762
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 518 ALLQHENEVVHRRNSE--------IDELKSLIENLQENQRQLQkDKAEEIEQLHEVIEKL 569
Cdd:COG1196 763 EELERELERLEREIEAlgpvnllaIEEYEELEERYDFLSEQRE-DLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
214-705 |
1.20e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 214 KKEESEQQL------ILELEDLRKQLqqaARELLTLKEEKSVLwNQKETLTNEAKEREAgspvlpahkdtalqeeveSLT 287
Cdd:COG1196 173 RKEEAERKLeateenLERLEDILGEL---ERQLEPLERQAEKA-ERYRELKEELKELEA------------------ELL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 288 RVQWESRkqsEKDRATLLSQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQfmddqaaerehEREEF 367
Cdd:COG1196 231 LLKLREL---EAELEELEAELEELEAELEELEAELA---ELEAELEELRLELEELELELEEAQA-----------EEYEL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 368 QQEIQRLEGQLRQAARPRppGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ 447
Cdd:COG1196 294 LAELARLEQDIARLEERR--RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 448 RQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAgcpMLPQGSSSRGPEAQPDVTERALLQHENEVV 527
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER---LEEELEELEEALAELEEEEEEEEEALEEAA 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 528 HRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRG-EGLGGQ 606
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlAGAVAV 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 607 ALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDA----------EEVAARHLAELEHCVALREAEVEAMASQI 676
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflplDKIRARAALAAALARGAIGAAVDLVASDL 608
|
490 500
....*....|....*....|....*....
gi 1907073931 677 QEFAATLKAKEAIIEQRDLEIDAVNKWKV 705
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALR 637
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-572 |
1.61e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 207 DLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLwNQKETLTNEAKEREAGSPVLPAHKDTALQEEVESL 286
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 287 TRVQWESRKQSEKDRATLLSQMRVLEsELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHER-- 364
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIE-ELEAQI------EQLKEELKALREALDELRAELTLLNEEAANLRERLESLErr 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 365 -EEFQQEIQRLEGQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETN 443
Cdd:TIGR02168 833 iAATERRLEDLEEQIEELS---------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 444 ASIQRQMVQLQEELEKQKKSMEELKEKEIlKQENMGDLLLTTVSRSGLDEAGcpmlPQGSSSRGPEAQPDVTERALLQHE 523
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLE----EAEALENKIEDDEEEARRRLKRLE 978
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1907073931 524 NEVVHRRN---SEIDELKSLIENLQENQRQlQKDKAEEIEQLHEVIEKLQSE 572
Cdd:TIGR02168 979 NKIKELGPvnlAAIEEYEELKERYDFLTAQ-KEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1286-1599 |
6.78e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 6.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1286 EARGSQREHQLRRQVE-----LLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHackqentSLL 1360
Cdd:TIGR02168 208 QAEKAERYKELKAELRelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS-------ELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1361 ESLDKVQQEVLRLRAVLDGKEKELKVVLEELESergkgqalQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQL 1440
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLAN--------LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1441 CVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALqherlltEQLSRNSQEACARQET 1520
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-------ERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907073931 1521 QVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQErcVELRREKERELEIQRQRDEHKIEQLQRLVRELR 1599
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE--LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1255-1514 |
1.15e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1255 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETA 1328
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1329 SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKvvleELESERGKgqalqaqQEEQ 1408
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT----LLNEEAAN-------LRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1409 QLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEALLAQEKGQLSELQKSLEA 1485
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEEALALLRSELEELSEELRE 905
|
250 260
....*....|....*....|....*....
gi 1907073931 1486 ERSRSLELSEALQHERLLTEQLSRNSQEA 1514
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-648 |
2.53e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 2.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 214 KKEESEQQLILELEDLrKQLQQAARELltlkeEKsvlwnQKETLTNEAKEreagspvlpAHKDTALQEEVESLTRVQWES 293
Cdd:TIGR02168 173 RRKETERKLERTRENL-DRLEDILNEL-----ER-----QLKSLERQAEK---------AERYKELKAELRELELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 294 RKQSEKDRatlLSQMRVLESELEDQlvqhrgCAQLAEEVATLKQQLAALdkhlRSQRQFMDDQAAEREHEREEFQQEIQR 373
Cdd:TIGR02168 233 RLEELREE---LEELQEELKEAEEE------LEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANEISR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 374 LEGQLRqaarprppgprdsqcvqldeeveLLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQL 453
Cdd:TIGR02168 300 LEQQKQ-----------------------ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 454 QEELEKQKKSMEELKEKEILKQENMGDLllttvsrsgldeagcpmlpqgsssrgpeaqpdvtERALLQHENEvVHRRNSE 533
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETL----------------------------------RSKVAQLELQ-IASLNNE 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 534 IDELKSLIENLQENQRQLQKDKAEEIEQLHEV-IEKLQSELslmgpkvhevsdpqaGSLHSELACLRGEGLGGQALRSEL 612
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAEL---------------EELEEELEELQEELERLEEALEEL 466
|
410 420 430
....*....|....*....|....*....|....*.
gi 1907073931 613 QAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAE 648
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1278-1517 |
2.67e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 2.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1278 LCAALTSTEARGSQREHQLRRQVELLAYKVEQEkcianELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENT 1357
Cdd:COG4942 5 LLLALLLALAAAAQADAAAEAEAELEQLQQEIA-----ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1358 SLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQAL---QAQQEEQQLRYLQREGQSSRALEELKLSLEKQL 1434
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1435 AQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEA 1514
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
...
gi 1907073931 1515 CAR 1517
Cdd:COG4942 240 AER 242
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
1249-1599 |
2.99e-07 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 55.53 E-value: 2.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1249 DRSSLLAEIQALRAQLR-MTHLQ--NQEKLQQLCAALTSTEAR---------GSQREHQLRRQVELLAYKVEQEKCIaNE 1316
Cdd:pfam07111 257 DRADLQATVELLQVRVQsLTHMLalQEEELTRKIQPSDSLEPEfpkkcrsllNRWREKVFALMVQLKAQDLEHRDSV-KQ 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1317 LQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERG 1396
Cdd:pfam07111 336 LRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1397 KGQALQAQQEEQQLR---------YLQREGQSSRALEELKLSLEKQLAQ-----------NNQLCVALKHERAAKDNLQK 1456
Cdd:pfam07111 416 WLETTMTRVEQAVARipslsnrlsYAVRKVHTIKGLMARKVALAQLRQEscpppppappvDADLSLELEQLREERNRLDA 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1457 ELQIEAS--RCEALLAQEKG-----QLSELQKSLEAERSRS--------LELSEALQHERLLTEQLSRNSQEACARQETQ 1521
Cdd:pfam07111 496 ELQLSAHliQQEVGRAREQGeaerqQLSEVAQQLEQELQRAqeslasvgQQLEVARQGQQESTEEAASLRQELTQQQEIY 575
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907073931 1522 VQhALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQRLVRELR 1599
Cdd:pfam07111 576 GQ-ALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRLARRVQ 652
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1270-1589 |
3.52e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 3.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1270 QNQEKLQQLCAALTSTEARGSQREHQLRRQVELlayKVEQEKCIANELQKT--LSKEQETASDVRKRLVVEQNAVQDLKS 1347
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEA---KKAEEKKKADELKKAeeLKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1348 ELhaCKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESErgkgqalqAQQEEQQLRYLQREGQSSRALEELK 1427
Cdd:PTZ00121 1584 EE--AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA--------EEEKKKVEQLKKKEAEEKKKAEELK 1653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1428 LSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALL--AQEKGQLSELQKSLEAERSRSLELSEALQHERLLTE 1505
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1506 QLSRNSQEacarqetqvqhallRKLKAEKTRALELEAmlEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDE 1585
Cdd:PTZ00121 1734 EAKKEAEE--------------DKKKAEEAKKDEEEK--KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
....
gi 1907073931 1586 HKIE 1589
Cdd:PTZ00121 1798 KKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-467 |
3.77e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 124 LSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKV 203
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 204 EKVDLQEALGKKE----------ESEQQLIL----ELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSP 269
Cdd:TIGR02168 762 EIEELEERLEEAEeelaeaeaeiEELEAQIEqlkeELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 270 VLPAHKDTaLQEEVESLTrvqwESRKQSEKDRATLLSQmrvLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKH---L 346
Cdd:TIGR02168 842 DLEEQIEE-LSEDIESLA----AEIEELEELIEELESE---LEALLNERASLEEALALLRSELEELSEELRELESKrseL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 347 RSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAAR------PRPPGPRDSQCVQLDEEVELLQEKLrEKLDGFNELVI 420
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSltleeaEALENKIEDDEEEARRRLKRLENKI-KELGPVNLAAI 992
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1907073931 421 kkdfadqqlliqeEEIKRLEETNASIQRQMVQLQEELEKQKKSMEEL 467
Cdd:TIGR02168 993 -------------EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
168-466 |
4.23e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 4.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 168 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLIL-ELEDLRKQLQQAARELLTLKEE 246
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 247 KSVLWNQKETLTNEAKEREA------------GSPVLPAHKDT--ALQEEVESLTRVQWES----------RKQSEKDRA 302
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQlleelnkkikdlGEEEQLRVKEKigELEAEIASLERSIAEKereledaeerLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 303 TLLSQMRVLESELEDQLVQHRGC----AQLAEEVATLKQQLAALDKHLRSQRQFMDD----------QAAEREHEREEFQ 368
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLteeyAELKEELEDLRAELEEVDKEFAETRDELKDyrekleklkrEINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 369 QEIQRLEGQLRQAaRPRPPGPRDSQcVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQR 448
Cdd:TIGR02169 413 EELQRLSEELADL-NAAIAGIEAKI-NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330
....*....|....*...
gi 1907073931 449 QMvqlqEELEKQKKSMEE 466
Cdd:TIGR02169 491 EL----AEAEAQARASEE 504
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1286-1604 |
5.14e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 5.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1286 EARGSQREHQLRRQVELLAYKVEQEKCIANELQKTlSKEQETASDVRKrlVVEQNAVQDLKSELHACKQENTSLLESLDK 1365
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA-AEAKKKADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1366 VQQevlrLRavldgKEKELKVVLEELESERGKGQALQAQQEEQQLRYLqREGQSSRALEELKLSLEKQLAQNNQLCVA-- 1443
Cdd:PTZ00121 1548 ADE----LK-----KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA-KKAEEARIEEVMKLYEEEKKMKAEEAKKAee 1617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1444 ----------LKHERAAKDNLQKELQIEASRCEALLAQE---KGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRN 1510
Cdd:PTZ00121 1618 akikaeelkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEeenKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1511 SQEACARQEtqvqhalLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQR-QRDEHKIE 1589
Cdd:PTZ00121 1698 AEEAKKAEE-------LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHlKKEEEKKA 1770
|
330
....*....|....*
gi 1907073931 1590 QLQRLVRELRWKEEV 1604
Cdd:PTZ00121 1771 EEIRKEKEAVIEEEL 1785
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
139-691 |
9.84e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 9.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 139 SKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALElhTAKGLLEGFKVEKVDLQEALGKKEES 218
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE--TLKKEVKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 219 EQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEreagSPVLPAHKDT----------------ALQEE 282
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGY----FPNKKQLEDWlhskskeinqtrdrlaKLNKE 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 283 VESLTRVQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVATLKQQLAALDKHLRSQRQFMDD 355
Cdd:TIGR00606 600 LASLEQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 356 QAAERE------HEREEFQQEIQRLEGQLRQAARPRPpgprdsqcvqldEEVELLQEKLREKLDGFNELVIKKDFADQQL 429
Cdd:TIGR00606 672 LTDENQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 430 LIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGPE 509
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSD 819
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 510 AQPDVTE-RALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKD----KAEEI-------------EQLHEVIEKLQS 571
Cdd:TIGR00606 820 LDRTVQQvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKtnelKSEKLqigtnlqrrqqfeEQLVELSTEVQS 899
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 572 ELSLMGPKVHEVSdPQAGSLHSELAclRGEGLGGQALRSELQAAQAAKEVFGQLlaDQAHGHSQALEALQQ-----RLQD 646
Cdd:TIGR00606 900 LIREIKDAKEQDS-PLETFLEKDQQ--EKEELISSKETSNKKAQDKVNDIKEKV--KNIHGYMKDIENKIQdgkddYLKQ 974
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1907073931 647 AEEVAARHLAELEHCVALREAEVEAMASQIQEFaATLKAKEAIIE 691
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINEDMRLMRQDI-DTQKIQERWLQ 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
140-463 |
1.41e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 140 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 219
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 220 QQliLELEDLRKQLQQAARELLTLKEEKSVLwnqkETLTNEAKEREAGSPVLPAHKDTALQEEVESltRVQWESRKQSEK 299
Cdd:TIGR02169 782 ND--LEARLSHSRIPEIQAELSKLEEEVSRI----EARLREIEQKLNRLTLEKEYLEKEIQELQEQ--RIDLKEQIKSIE 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 300 DRATLL-SQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQFMDD---QAAEREHEREEFQQEIQRLE 375
Cdd:TIGR02169 854 KEIENLnGKKEELEEELEELEAALR---DLESRLGDLKKERDELEAQLRELERKIEEleaQIEKKRKRLSELKAKLEALE 930
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 376 GQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKkdfADQQLLIQEEEIKRLEETNASIQRQMVQLQ- 454
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNML---AIQEYEEVLKRLDELKEKRAKLEEERKAILe 1007
|
330
....*....|.
gi 1907073931 455 --EELEKQKKS 463
Cdd:TIGR02169 1008 riEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1164-1604 |
1.42e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1164 RDSQALSEVTTDKGEKESLETHL-TWSEELLRAIQEVFAREQEKAELQprpygsnlGDYNSLVQRLEKVIQEQGDPQKVQ 1242
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELeELEEELEELEEELEEAEEELEEAE--------AELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1243 DHLcLSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLS 1322
Cdd:COG1196 382 EEL-AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1323 KEQETASDVRKRLVVEQnAVQDLKSELHACKQENTSLLE---------------SLDKVQQEVLRLRAVLDGKEKELKVV 1387
Cdd:COG1196 461 LLELLAELLEEAALLEA-ALAELLEELAEAAARLLLLLEaeadyegflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1388 LEELESERGK-GQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCE 1466
Cdd:COG1196 540 LEAALAAALQnIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1467 ALL-------AQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ-----ETQVQHALLRKLKAEK 1534
Cdd:COG1196 620 DTLlgrtlvaARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEaeleeLAERLAEEELELEEAL 699
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1535 TRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQRLVRELRWKEEV 1604
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1226-1599 |
2.62e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1226 QRLEKVIQEQGDPQKVQDHLCLSDRSSLLAEIQALRAqlrMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAY 1305
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKA---LEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1306 KVEQEKcianeLQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELK 1385
Cdd:pfam02463 250 QEEIES-----SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1386 VVLEELESERGKGQalqaqqeeqqlrylqregQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRC 1465
Cdd:pfam02463 325 KAEKELKKEKEEIE------------------ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1466 EALLAqEKGQLSELQKSLEAERSRSLELSEALQHERL-LTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEAML 1544
Cdd:pfam02463 387 SSAAK-LKEEELELKSEEEKEAQLLLELARQLEDLLKeEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1907073931 1545 EKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQRLVRELR 1599
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1280-1603 |
5.59e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1280 AALTSTEARGSQREHQLRRQVELLAYKVEqEKCIANELQKTlSKEQETASDVRKRlvveqnAVQDLKSELHACKQENTSL 1359
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAE-EAKKADEAKKK-AEEAKKAEEAKKK------AEEAKKADEAKKKAEEAKK 1484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1360 LESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQ 1439
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1440 lcvalKHERAAKDNLQKELQIEasRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLsRNSQEACARQE 1519
Cdd:PTZ00121 1565 -----KAEEAKKAEEDKNMALR--KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL-KKAEEEKKKVE 1636
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1520 TQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEiQRQRDEHKIEQLQRLVRELR 1599
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK-KEAEEAKKAEELKKKEAEEK 1715
|
....
gi 1907073931 1600 WKEE 1603
Cdd:PTZ00121 1716 KKAE 1719
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
133-377 |
5.72e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 5.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 133 EMALDSSKQLEEARQLhrcVErEFR--HRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKvdLQE 210
Cdd:COG4913 215 EYMLEEPDTFEAADAL---VE-HFDdlERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWF--AQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 211 ALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEReagspvlpahkdtaLQEEVESLTRvq 290
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ--------------LEREIERLER-- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 291 weSRKQSEKDRATLLSQMRVLESEL---EDQLVQHRgcAQLAEEVATLKQQLAALDKHLRSQRqfmdDQAAEREHEREEF 367
Cdd:COG4913 353 --ELEERERRRARLEALLAALGLPLpasAEEFAALR--AEAAALLEALEEELEALEEALAEAE----AALRDLRRELREL 424
|
250
....*....|
gi 1907073931 368 QQEIQRLEGQ 377
Cdd:COG4913 425 EAEIASLERR 434
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
283-687 |
1.97e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 283 VESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALD---KHLRSQRQFMDD--QA 357
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaelEELREELEKLEKllQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 358 AEREHEREEFQQEIQRLEGQLRQA-ARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNeLVIKKDFADQQLLIQE--E 434
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLS-LATEEELQDLAEELEElqQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 435 EIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE---------------NMGDLLLTTVSRSGLDEAGCPML 499
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallallgLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 500 PQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKS---LIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLM 576
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 577 GPKVHEVSDPQAGSLHSElaclrgeglggQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLA 656
Cdd:COG4717 367 ELEQEIAALLAEAGVEDE-----------EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|.
gi 1907073931 657 ELEHCVALREAEVEAMASQIQEFAATLKAKE 687
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-572 |
2.08e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 168 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 247
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 248 SVLWNQ--KETLTNEAKE-REAGSPVLPAHKD-TALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEDQLVQHr 323
Cdd:TIGR04523 305 EQDWNKelKSELKNQEKKlEEIQNQISQNNKIiSQLNEQISQLKK----ELTNSESENSEKQRELEEKQNEIEKLKKEN- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 324 gcAQLAEEVATLKQQLAALDKHLRSQR---QFMDDQAAEREHEREEFQQEIQRLEgqlrqaarprppgprdSQCVQLDEE 400
Cdd:TIGR04523 380 --QSYKQEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQEKELLEKEIERLK----------------ETIIKNNSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 401 VELLQEKLREKLDGFNELVIKKDfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD 480
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRE-------SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 481 LLlttvsrsgldeagcpmlPQGSSSRgpeaqpdVTERALlqhENEVVhRRNSEIDELKSLIENLQEN--QRQLQK---DK 555
Cdd:TIGR04523 515 LT-----------------KKISSLK-------EKIEKL---ESEKK-EKESKISDLEDELNKDDFElkKENLEKeidEK 566
|
410
....*....|....*..
gi 1907073931 556 AEEIEQLHEVIEKLQSE 572
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKK 583
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
122-470 |
2.47e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGF 201
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 202 KVEK-----------VDLQEALGKKEESEQQL-----------------ILELEDLRKQLQQAARELLTLKEEKSVLWNQ 253
Cdd:PRK02224 418 REERdelrereaeleATLRTARERVEEAEALLeagkcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEER 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 254 KETLTnEAKEREAGSpvlpahkdTALQEEVESLTRVQWESRKQSEKDRATlLSQMRVLESELEDQLVQHRGCAQLA---- 329
Cdd:PRK02224 498 LERAE-DLVEAEDRI--------ERLEERREDLEELIAERRETIEEKRER-AEELRERAAELEAEAEEKREAAAEAeeea 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 330 ----EEVATLKQQLAALDKHLRSQRQFMDDQaaereHEREEFQQEIQRLEGQLRQAARprppgprdsqcvQLDEEVELLQ 405
Cdd:PRK02224 568 eearEEVAELNSKLAELKERIESLERIRTLL-----AAIADAEDEIERLREKREALAE------------LNDERRERLA 630
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907073931 406 EK------LREKLDG--FNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEkqkkSMEELKEK 470
Cdd:PRK02224 631 EKrerkreLEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE----ELEELRER 699
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1215-1597 |
2.73e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1215 GSNLGDYNSLVQR--LEKVIQEQGDPQKVQDHL--CLSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLcAALTSTEARGS 1290
Cdd:TIGR02169 658 GSRAPRGGILFSRsePAELQRLRERLEGLKRELssLQSELRRIENRLDELSQELSDASRKIGEIEKEI-EQLEQEEEKLK 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1291 QREHQLRR-----QVELLAYKVEQEKCIAN--ELQKTLSKEQETASDVRKRLVVEQ-NAVQDLKSELHACKQENTSLLES 1362
Cdd:TIGR02169 737 ERLEELEEdlsslEQEIENVKSELKELEARieELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1363 LDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKgqalqaqqeeqqlryLQREGQSSRA-LEELKLSLEKQLAQNNQLC 1441
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS---------------IEKEIENLNGkKEELEEELEELEAALRDLE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1442 VALKHERAAKDNLQKELQieasrceallAQEKGQlSELQKSLEAERSRSLELSEALQherLLTEQLSRNSQEACARQETQ 1521
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLR----------ELERKI-EELEAQIEKKRKRLSELKAKLE---ALEEELSEIEDPKGEDEEIP 947
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907073931 1522 VQHALLRKLKAEKTRALELEAMLEKVQKQAahtqQQLEAQAQERCVELRREKEReLEIQRQRDEHKIEQLQRLVRE 1597
Cdd:TIGR02169 948 EEELSLEDVQAELQRVEEEIRALEPVNMLA----IQEYEEVLKRLDELKEKRAK-LEEERKAILERIEEYEKKKRE 1018
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
273-682 |
2.84e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 273 AHKDTALQEEVESLTRVQWE------SRKQSEKDRATLLSQMRVLESELEDQLVQHRgcAQLAEEVATLKQQLAALD--- 343
Cdd:pfam12128 240 RPEFTKLQQEFNTLESAELRlshlhfGYKSDETLIASRQEERQETSAELNQLLRTLD--DQWKEKRDELNGELSAADaav 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 344 KHLRSQRQFMDDQAAErehereeFQQE-IQRLEGQLRQAARPRppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIK- 421
Cdd:pfam12128 318 AKDRSELEALEDQHGA-------FLDAdIETAAADQEQLPSWQ------SELENLEERLKALTGKHQDVTAKYNRRRSKi 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 422 --------KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKsmeELKEKEILKQENMGDLllttvsrsglde 493
Cdd:pfam12128 385 keqnnrdiAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKL---EFNEEEYRLKSRLGEL------------ 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 494 agcpmlpqgsssRGPEAQPDVTERALLQHEN--EVVHRRNSEIDELKSLIENLQENQRQLQK--DKAEE-IEQLHEVIEK 568
Cdd:pfam12128 450 ------------KLRLNQATATPELLLQLENfdERIERAREEQEAANAEVERLQSELRQARKrrDQASEaLRQASRRLEE 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 569 LQSELSlmgpKVHEVSDPQAGSLHSELA------------CLRGEGLGGQALRSELQAAQAAKE--VFG------QLLAD 628
Cdd:pfam12128 518 RQSALD----ELELQLFPQAGTLLHFLRkeapdweqsigkVISPELLHRTDLDPEVWDGSVGGElnLYGvkldlkRIDVP 593
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1907073931 629 QAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAmASQIQEFAAT 682
Cdd:pfam12128 594 EWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK-ASREETFART 646
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1294-1604 |
3.33e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1294 HQLRRQVELLAykveQEKCIANELQKTLSK----EQETASDVRKRLVVEQNAVQDLKS-ELHACKQENTSLLESLDKVQQ 1368
Cdd:PTZ00121 1264 HFARRQAAIKA----EEARKADELKKAEEKkkadEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAE 1339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1369 EVLRLRAVLDGKEKELKVVLEELEsERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHER 1448
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAE-EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1449 AAkDNLQKElqieasrceallAQEKGQLSELQKslEAERSRSLELSEALQHERLLTEQLSRNSQEACARQEtqvqhalLR 1528
Cdd:PTZ00121 1419 KA-DEAKKK------------AEEKKKADEAKK--KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE-------AK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1529 KLKAEKTRALELEAMLEKVQKQAahTQQQLEAQAQERCVELRREKE-------RELEIQRQRDEHKIEQLQRLVRELRWK 1601
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKA--DEAKKAAEAKKKADEAKKAEEakkadeaKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
...
gi 1907073931 1602 EEV 1604
Cdd:PTZ00121 1555 EEL 1557
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1114-1392 |
4.89e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 4.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1114 KEKEIHAKQMKALLQMVfDESHQILALSESQDPSSALNKGEPRDPLDgfprdsqALSEVTTDKGEKESLETH-----LTW 1188
Cdd:TIGR02169 230 KEKEALERQKEAIERQL-ASLEEELEKLTEEISELEKRLEEIEQLLE-------ELNKKIKDLGEEEQLRVKekigeLEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1189 SEELLRAIQEVFAREQEKAELQPRPYGSNLGDYNSLVQRLEKVIQEQGdpqkvqdhlclSDRSSLLAEIQALRAQLRMTH 1268
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-----------KRRDKLTEEYAELKEELEDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1269 LQNQEKlqqlcaaltSTEARGSQREH-QLRRQVELLAYKVEQEKCIANELQKTLSKEQETASDVR---KRLVVEQNAVQ- 1343
Cdd:TIGR02169 371 AELEEV---------DKEFAETRDELkDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNaaiAGIEAKINELEe 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1907073931 1344 ---DLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELE 1392
Cdd:TIGR02169 442 ekeDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
140-670 |
6.84e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 6.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 140 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREE----------SAAKDRLALELHTAKGLLEGFKVEKVDLQ 209
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIeelraqeavlEETQERINRARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 210 EA-----LGKKEESEQQLILELEDLRKQ---LQQAARELLTL--KEEKSVLWNQKETLTNEAKEREAGSpvlpAHKDTAL 279
Cdd:TIGR00618 309 AQrihteLQSKMRSRAKLLMKRAAHVKQqssIEEQRRLLQTLhsQEIHIRDAHEVATSIREISCQQHTL----TQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 280 QEEVESLTRVQWESRKQSEKDR------ATLLSQMRVLESEL----EDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQ 349
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQreqatiDTRTSAFRDLQGQLahakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 350 RQFMDDQAAEREHEREEFQQ--EIQRLEGQ--LRQAARPRP-----------------PGPRDSQCVQLDEEVELLQE-- 406
Cdd:TIGR00618 465 AQSLKEREQQLQTKEQIHLQetRKKAVVLArlLELQEEPCPlcgscihpnparqdidnPGPLTRRMQRGEQTYAQLETse 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 407 -----KLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQ---KKSMEELKEKEILKQENM 478
Cdd:TIGR00618 545 edvyhQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLseaEDMLACEQHALLRKLQPE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 479 GDLLLTTVSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALL--QHENEVVHRRNSEIDELKSLIenlqenqRQLQKDKa 556
Cdd:TIGR00618 625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSirVLPKELLASRQLALQKMQSEK-------EQLTYWK- 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 557 EEIEQLHEVIEKLQSELSLMGPKVHEVSDpqagSLHSELACLRGEGLGGQALRSELQAAQaaKEVFGQLLADQAHGHSQA 636
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIEN----ASSSLGSDLAAREDALNQSLKELMHQA--RTVLKARTEAHFNNNEEV 770
|
570 580 590
....*....|....*....|....*....|....*....
gi 1907073931 637 LEALQ--QRLQDAE---EVAARHLAELEHCVALREAEVE 670
Cdd:TIGR00618 771 TAALQtgAELSHLAaeiQFFNRLREEDTHLLKTLEAEIG 809
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
368-494 |
7.03e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 368 QQEIQRLEGQLRQaarprppgprdsqcvqLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQ---EEEIKRLEETNA 444
Cdd:COG2433 412 EEEIRRLEEQVER----------------LEAEVEELEAELEEKDERIERLERELSEARSEERREirkDREISRLDREIE 475
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1907073931 445 SIQRQMVQLQEELEKQKKSMEELkeKEILKQENMGDLL----LTTVSRSGLDEA 494
Cdd:COG2433 476 RLERELEEERERIEELKRKLERL--KELWKLEHSGELVpvkvVEKFTKEAIRRL 527
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
132-471 |
8.98e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 8.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 132 LEMALDSSKQLEEAR-QLHRCVER--EFRHRNEEMAQAMQKQQELLERLREESAAKDRLALEL-HTAKGLLEGFKVEKVD 207
Cdd:COG4717 124 LLQLLPLYQELEALEaELAELPERleELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 208 LQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQK------ETLTNEAKEREAGSPVLPAHKDTALQE 281
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllliaaALLALLGLGGSLLSLILTIAGVLFLVL 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 282 EV---ESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRG--CAQLAEEVATLKQQLAALDKHLRSQRQFMD-- 354
Cdd:COG4717 284 GLlalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGlpPDLSPEELLELLDRIEELQELLREAEELEEel 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 355 DQAAEREHEREEFQQEIQRLEGQLRQAARprppgpRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADqqlliQEE 434
Cdd:COG4717 364 QLEELEQEIAALLAEAGVEDEEELRAALE------QAEEYQELKEELEELEEQLEELLGELEELLEALDEEE-----LEE 432
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907073931 435 EIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKE 471
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1339-1542 |
9.37e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 9.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1339 QNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKgQALQAQQEEQQLRYLQREGQ 1418
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE-IEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1419 SSRALEELKLS------------LEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAE 1486
Cdd:COG3883 101 SVSYLDVLLGSesfsdfldrlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907073931 1487 RSRSLELSEAlqhERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEA 1542
Cdd:COG3883 181 EALLAQLSAE---EAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1222-1603 |
9.78e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 9.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1222 NSLVQRLEkVIQEQGDPQKVQDHLCLSDRSSLLAEIQA-LRAQLRMTHLQNQEKLQQLCAALTS-TEARG-----SQREH 1294
Cdd:pfam15921 295 NSIQSQLE-IIQEQARNQNSMYMRQLSDLESTVSQLRSeLREAKRMYEDKIEELEKQLVLANSElTEARTerdqfSQESG 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1295 QLRRQVE-LLA--YKVEQEKCIANELQKTL----SKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLL------- 1360
Cdd:pfam15921 374 NLDDQLQkLLAdlHKREKELSLEKEQNKRLwdrdTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMerqmaai 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1361 ----ESLDKVQQevlrLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREgqssRALEELKLSLEKQLAQ 1436
Cdd:pfam15921 454 qgknESLEKVSS----LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKE----RAIEATNAEITKLRSR 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1437 NNQLCVALKHERAAKDNLQkELQIEasrCEALlaqeKGQLSELQKSLEAERSRSLELSEAL-QHERLLTEQLSRNSQ--- 1512
Cdd:pfam15921 526 VDLKLQELQHLKNEGDHLR-NVQTE---CEAL----KLQMAEKDKVIEILRQQIENMTQLVgQHGRTAGAMQVEKAQlek 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1513 EACARQETQVQHALLRKLKAEKTRALELEAM---LEKVQKQAAHTQQQLEAQaqercvELRREKEREL-EIQRQRDE--H 1586
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEARVSdleLEKVKLVNAGSERLRAVK------DIKQERDQLLnEVKTSRNElnS 671
|
410
....*....|....*..
gi 1907073931 1587 KIEQLQRLVRELRWKEE 1603
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSE 688
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
396-659 |
1.21e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 396 QLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELkEKEILKQ 475
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL-RAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 476 ENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGpeaqpdVTERALLQHeneVVHRRNSEIDELKSLIENLQENQRQLQKDK 555
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDA------VRRLQYLKY---LAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 556 AEeieqlhevIEKLQSELslmgpkvhevsdpqagslhselaclrgeglggQALRSELQAAQAAKEVFGQLLADQAHGHSQ 635
Cdd:COG4942 174 AE--------LEALLAEL--------------------------------EEERAALEALKAERQKLLARLEKELAELAA 213
|
250 260
....*....|....*....|....
gi 1907073931 636 ALEALQQRLQDAEEVAARHLAELE 659
Cdd:COG4942 214 ELAELQQEAEELEALIARLEAEAA 237
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1167-1639 |
1.57e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1167 QALSEVTTDKGEKESLETHLTWSEELLRAIQEVFAREQEKAELQPRPYGSNLGDYNSLVQRLEKVIQEQGDPQKVQDHLc 1246
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1247 LSDRSSLLAEIQALRAQLRmTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLSKEQE 1326
Cdd:COG1196 406 EEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1327 TASDVRKRLVVEQNAVQDLKSELHAckqentSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQE 1406
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEG------VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1407 EQQLRYLQREGQSSRAlEELKLSLEKQLAQNNQLCVALKHERAAkdNLQKELQIEASRCEALLAQEKGQLSELQKSLEAE 1486
Cdd:COG1196 559 AAAAIEYLKAAKAGRA-TFLPLDKIRARAALAAALARGAIGAAV--DLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1487 RSRSLELSEALQHERLLTEQLSRNSQEAcaRQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERC 1566
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907073931 1567 VELRREKERELEIQRQRDEHKIEQLQRLVRELrwKEEVSGGNGPCRGSPGRGSLERDQFqeqqqeleKIRQQL 1639
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEE--ELLEEEALEELPEPPDLEELERELE--------RLEREI 776
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
175-389 |
1.93e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 175 ERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQK 254
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 255 ETLTNEAKER--------EAGSPVLPAHKDTALQEE-----VESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQ 321
Cdd:COG4942 100 EAQKEELAELlralyrlgRQPPLALLLSPEDFLDAVrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907073931 322 HRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGP 389
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1233-1542 |
2.12e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1233 QEQGDPQKVQDHLCLSDRSSLLAEIQAlRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRqVELLAYKVEQEKC 1312
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER-IRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1313 IANELQKTLSKEQETasdvrKRLVVE-QNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEEL 1391
Cdd:pfam17380 366 RQEEIAMEISRMREL-----ERLQMErQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1392 ESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQlAQNNQLCVALKH---ERAAKDNLQKELQIEASR--CE 1466
Cdd:pfam17380 441 EEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE-KRDRKRAEEQRRkilEKELEERKQAMIEEERKRklLE 519
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907073931 1467 ALLAQEKGQLSELQKSLEAERSRSLElsEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEA 1542
Cdd:pfam17380 520 KEMEERQKAIYEEERRREAEEERRKQ--QEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA 593
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
122-574 |
2.33e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVErEFRHRNEEMAQAMQKQQELLERLREESAAK-DRLALELHTAKGLLEG 200
Cdd:pfam15921 110 QSVIDLQTKLQEMQMERDAMADIRRRESQSQE-DLRNQLQNTVHELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 201 FKVEKVDLQEALGKK-EESEQQLILELEDLRKQLQQAARELLT----LKEEKSVLWNQKETLTNEAKEREagSPVLPAHK 275
Cdd:pfam15921 189 IRSILVDFEEASGKKiYEHDSMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKI--ELLLQQHQ 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 276 DTALQ------EEVESLTRVQWESRKQSEkdraTLLSQMRVLESELEDQLVQH-RGCAQLAEEVATLKQQLAALDK---- 344
Cdd:pfam15921 267 DRIEQliseheVEITGLTEKASSARSQAN----SIQSQLEIIQEQARNQNSMYmRQLSDLESTVSQLRSELREAKRmyed 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 345 ---HLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIK 421
Cdd:pfam15921 343 kieELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---------ADLHKREKELSLEKEQNKRLWDRDTGNSIT 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 422 KDFADQQLLIQEEEIKRLE--------ETNASIQRQMVQLQ---EELEKQKKSMEELKE-KEILkqenmgdlllttvsRS 489
Cdd:pfam15921 414 IDHLRRELDDRNMEVQRLEallkamksECQGQMERQMAAIQgknESLEKVSSLTAQLEStKEML--------------RK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 490 GLDEAGCPMLPQGSSSRgpeAQPDVTerALLQHENEVVHRRNSEIDELKSLIEnLQENQRQLQKDKAEEIEQLHEVIEKL 569
Cdd:pfam15921 480 VVEELTAKKMTLESSER---TVSDLT--ASLQEKERAIEATNAEITKLRSRVD-LKLQELQHLKNEGDHLRNVQTECEAL 553
|
....*
gi 1907073931 570 QSELS 574
Cdd:pfam15921 554 KLQMA 558
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
167-572 |
2.36e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 167 MQKQ-QELLERLREESAAKDRLALElhtakgllegfkveKVDLQEALGKKEESeqqlILELEDLRKQLQQaarelltlke 245
Cdd:pfam01576 101 MQQHiQDLEEQLDEEEAARQKLQLE--------------KVTTEAKIKKLEED----ILLLEDQNSKLSK---------- 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 246 EKSVLWNQKETLTNEAKEREAGSPVLpahkdTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHrgc 325
Cdd:pfam01576 153 ERKLLEERISEFTSNLAEEEEKAKSL-----SKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI--- 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 326 AQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEreefQQEIQRLEGQL---------RQAARPRPpgprDSQCVQ 396
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNA----LKKIRELEAQIselqedlesERAARNKA----EKQRRD 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 397 LDEEVELLQEKLREKLDGFN---ELVIKKDFADQQLLIQEEEIKRLEETNASIQRQ-----MVQLQEELEKQKKSMEEL- 467
Cdd:pfam01576 297 LGEELEALKTELEDTLDTTAaqqELRSKREQEVTELKKALEEETRSHEAQLQEMRQkhtqaLEELTEQLEQAKRNKANLe 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 468 KEKEILKQEN--MGDLLLTTVSRSGLDEAGCPMLP---QGSSSRGPEAQPDVTERAllqhenEVVHRRNSEIDELKSLIE 542
Cdd:pfam01576 377 KAKQALESENaeLQAELRTLQQAKQDSEHKRKKLEgqlQELQARLSESERQRAELA------EKLSKLQSELESVSSLLN 450
|
410 420 430
....*....|....*....|....*....|
gi 1907073931 543 NLQENQRQLQKDKAEEIEQLHEVIEKLQSE 572
Cdd:pfam01576 451 EAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
154-476 |
2.54e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 154 REFRHRNEEMAQAMQKQQELLERLREesaakdrLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQL 233
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIID-------LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 234 QQAARELLTLKEEKSVLWNQKETLTNEAKEREagspvlpaHKDTALQEEVESLTRVQwesRKQSEKDRATLLSQMRVLES 313
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQV--------LKENKEEEKEKKLQEEE---LKLLAKEEEELKSELLKLER 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 314 ELEDqlvqhrgcaqLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLE--GQLRQAARPRPPGPRD 391
Cdd:pfam02463 308 RKVD----------DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEelEKLQEKLEQLEEELLA 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 392 SQC---VQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELK 468
Cdd:pfam02463 378 KKKlesERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE 457
|
....*...
gi 1907073931 469 EKEILKQE 476
Cdd:pfam02463 458 LKLLKDEL 465
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1318-1603 |
2.69e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1318 QKTLSKEQETasdvRKRLVVEQNAVQDLKSELhACKQENTSLLESLDKVQQEVLRLRAVLDGkEKELKVVLEELESERGK 1397
Cdd:pfam17380 281 QKAVSERQQQ----EKFEKMEQERLRQEKEEK-AREVERRRKLEEAEKARQAEMDRQAAIYA-EQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1398 GQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLS 1477
Cdd:pfam17380 355 QEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1478 ELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELE--------AMLEKVQK 1549
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEkeleerkqAMIEEERK 514
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1907073931 1550 QAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHK-IEQLQRLVRELRWKEE 1603
Cdd:pfam17380 515 RKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRrIQEQMRKATEERSRLE 569
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-456 |
3.16e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 226 LEDLRKQLQQAARELLTLKEEKSVLWNQKETLtneakereagspvlpahkdTALQEEVESLTRVQWEsrkqsEKDRATLL 305
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDAL-------------------QERREALQRLAEYSWD-----EIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 306 SQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddqaaerehEREEFQQEIQRLEGQLRQAARpr 385
Cdd:COG4913 668 REIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKG-----------EIGRLEKELEQAEEELDELQD-- 734
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907073931 386 ppgprdsqcvQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE 456
Cdd:COG4913 735 ----------RLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1380-1603 |
3.59e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1380 KEKELKVVLEELESERgkgqALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVA-LKHERAAKDNLQKEL 1458
Cdd:pfam02463 171 KKEALKKLIEETENLA----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1459 QIEASRCEALLAQEKGQLSELQKSLEAERSRslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRAL 1538
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907073931 1539 ELEAMLEKVQKQAAHtqqqleaqaqercvelRREKERELEIQRQRDEHKIEQLQRLVRELRWKEE 1603
Cdd:pfam02463 325 KAEKELKKEKEEIEE----------------LEKELKELEIKREAEEEEEEELEKLQEKLEQLEE 373
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
121-573 |
4.91e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 121 YQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREF-----RHRNEEMAQAMQKQ-------------QELLERLREESA 182
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleeRHELYEEAKAKKEElerlkkrltgltpEKLEKELEELEK 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 183 AKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLIL---EL-EDLRKQL-QQAARELLTLKEEKSVLWNQKETL 257
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrELtEEHRKELlEEYTAELKRIEKELKEIEEKERKL 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 258 TNEAKERE---AGSPVLPAHKDTA--LQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELedqlvqhRGCAQLAEEV 332
Cdd:PRK03918 479 RKELRELEkvlKKESELIKLKELAeqLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEI-------KSLKKELEKL 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 333 ATLKQQLAALDKHLRSqrqfmddqaaerehereeFQQEIQRLEGQLRQAARprppgprdsqcvqldEEVELLQEKLREKL 412
Cdd:PRK03918 552 EELKKKLAELEKKLDE------------------LEEELAELLKELEELGF---------------ESVEELEERLKELE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 413 DGFNELVIKKDfADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEK-EILKQENMGDLLLTTVSR-SG 490
Cdd:PRK03918 599 PFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRElAG 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 491 LDEagcpmlpqgsSSRGPEAQPDVTERAL--LQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEK 568
Cdd:PRK03918 678 LRA----------ELEELEKRREEIKKTLekLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
....*
gi 1907073931 569 LQSEL 573
Cdd:PRK03918 748 IASEI 752
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
562-698 |
6.84e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.19 E-value: 6.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 562 LHEVIEKLQSELSLMGPKVHEVSD------PQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQ 635
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADllslerQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907073931 636 ALEALQQrlqdaeeVAARHLAElehcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEID 698
Cdd:PRK09039 124 ELDSEKQ-------VSARALAQ----VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
209-482 |
7.34e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.56 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 209 QEALGKKEESEQQLILELEDLRKQLQQAaRELLTLKEEKSVLWNQKETLTNEAKEREAGSPVlpahkdTALQEEVESLTR 288
Cdd:COG5185 267 LEKLGENAESSKRLNENANNLIKQFENT-KEKIAEYTKSIDIKKATESLEEQLAAAEAEQEL------EESKRETETGIQ 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 289 VQWEsrkQSEKDRATLLSQMRVLESELEdQLVQHRGCAQLAEEVATLKQQLAALDKHL----RSQRQFMDDQAAEREHER 364
Cdd:COG5185 340 NLTA---EIEQGQESLTENLEAIKEEIE-NIVGEVELSKSSEELDSFKDTIESTKESLdeipQNQRGYAQEILATLEDTL 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 365 EEFQQEIQRLEGQLRQAARprppgprdsqcvqldeEVELLQEKLREKLDGFNELVIKKDFADQQLLIQE--EEIKRLEET 442
Cdd:COG5185 416 KAADRQIEELQRQIEQATS----------------SNEEVSKLLNELISELNKVMREADEESQSRLEEAydEINRSVRSK 479
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907073931 443 NASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLL 482
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKL 519
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
153-469 |
7.44e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 7.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 153 EREFRHRNEEMAQAMQKQQELLERLREEsaakdrlaleLHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQ 232
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 233 LQQAarelltLKEEKSVLWNQKETLTNEAKEREAGspvlpaHKDtALQEEvesltrvqwesRKQSEKDRATLLSQMRVLE 312
Cdd:pfam12128 669 KNKA------LAERKDSANERLNSLEAQLKQLDKK------HQA-WLEEQ-----------KEQKREARTEKQAYWQVVE 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 313 SELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPR-- 390
Cdd:pfam12128 725 GALDAQL------ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyf 798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 391 DSQCVQLDEEVELLQEKLREKLDGFNELvikkdfaDQQLLIQEEEIKR----LEETNASIQRQMVQLQEELEKQKKSMEE 466
Cdd:pfam12128 799 DWYQETWLQRRPRLATQLSNIERAISEL-------QQQLARLIADTKLrrakLEMERKASEKQQVRLSENLRGLRCEMSK 871
|
...
gi 1907073931 467 LKE 469
Cdd:pfam12128 872 LAT 874
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1198-1597 |
9.71e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 9.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1198 EVFAREQEKAELQPRPYGSNLGDYNSLVQRLEKVIQEQGDPQKVQDHLcLSDRSSLLAEIQALRAQLRMTHLQNQekLQQ 1277
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAE--LAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1278 LCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENT 1357
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1358 SLLESLDKVQQEVLRLR------------------AVLDGKEKELK------------------VVLEELESERGKGQAL 1401
Cdd:COG4717 224 ELEEELEQLENELEAAAleerlkearlllliaaalLALLGLGGSLLsliltiagvlflvlgllaLLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1402 QAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKH---ERAAKDNLQKELQIEAS--RCEALLAQEK-GQ 1475
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEElqeLLREAEELEEELQLEELeqEIAALLAEAGvED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1476 LSELQKSLEAERsrslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQ 1555
Cdd:COG4717 384 EEELRAALEQAE----EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELE 459
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1907073931 1556 QqleaqaqercvELRR-EKERELEIQRQRDEHKIEQLQRLVRE 1597
Cdd:COG4717 460 A-----------ELEQlEEDGELAELLQELEELKAELRELAEE 491
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
134-696 |
1.05e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 134 MALDSSKQLEEARQLHRcVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALG 213
Cdd:TIGR02169 282 KDLGEEEQLRVKEKIGE-LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 214 KKEESEQQLILELE--------------DLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLPAhKDTAL 279
Cdd:TIGR02169 361 ELKEELEDLRAELEevdkefaetrdelkDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA-KINEL 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 280 QEEVESLTRVQWESR---KQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVATLKQQLAALDKhlrsQRQFMDDQ 356
Cdd:TIGR02169 440 EEEKEDKALEIKKQEwklEQLAADLSKYEQELYDLKEEYD----------RVEKELSKLQRELAEAEA----QARASEER 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 357 AAEREHEREEFQQEIQRLEGQLRQAARPRP---------PGPRDSQCVQLDEEV-----ELLQE------------KLRE 410
Cdd:TIGR02169 506 VRGGRAVEEVLKASIQGVHGTVAQLGSVGEryataievaAGNRLNNVVVEDDAVakeaiELLKRrkagratflplnKMRD 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 411 K--------LDGFN-------------ELVIKKDFADQQLLIQEEEIKRLeetnaSIQRQMVQLQEELEKQKKSM----- 464
Cdd:TIGR02169 586 ErrdlsilsEDGVIgfavdlvefdpkyEPAFKYVFGDTLVVEDIEAARRL-----MGKYRMVTLEGELFEKSGAMtggsr 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 465 ---------EELKEKEILKQENMGDL------LLTTVSR--SGLDEAgcpmlpqgsSSRGPEAQPDVTERALLQHENEVV 527
Cdd:TIGR02169 661 aprggilfsRSEPAELQRLRERLEGLkrelssLQSELRRieNRLDEL---------SQELSDASRKIGEIEKEIEQLEQE 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 528 HRRNSE-IDELKSLIENLQ---ENQRQLQKDKAEEIEQLHEVIEKLQSELslmgpkvhevSDPQAGSLHSELACLRGEGL 603
Cdd:TIGR02169 732 EEKLKErLEELEEDLSSLEqeiENVKSELKELEARIEELEEDLHKLEEAL----------NDLEARLSHSRIPEIQAELS 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 604 GGQALRSELQAAqaakevfgqllADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMASQIQEFAATL 683
Cdd:TIGR02169 802 KLEEEVSRIEAR-----------LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
650
....*....|...
gi 1907073931 684 KAKEAiiEQRDLE 696
Cdd:TIGR02169 871 EELEA--ALRDLE 881
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
131-619 |
1.12e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 131 LLEMALDSSKQLEEARQLHrcvEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQE 210
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQ---DENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQME 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 211 ALGKKEESEQQLILELEDLRKQLQQaarellTLKEEKSVLWNQKETLTNEAKEREAGSpvlpahkdtalqEEVESLTRVQ 290
Cdd:pfam05483 339 ELNKAKAAHSFVVTEFEATTCSLEE------LLRTEQQRLEKNEDQLKIITMELQKKS------------SELEEMTKFK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 291 wesrkqseKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQE 370
Cdd:pfam05483 401 --------NNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 371 IQRLEGQLRQAARPRPPGPRDSQCVQLdEEVELLQE--KLREKLDGFNELVIKKDFADQQLLIQeeeIKRLEETNASIQR 448
Cdd:pfam05483 473 VEDLKTELEKEKLKNIELTAHCDKLLL-ENKELTQEasDMTLELKKHQEDIINCKKQEERMLKQ---IENLEEKEMNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 449 QMVQLQEELEKQKksmeelkekeilkqenmgdlllttvsrsglDEAGCPMLPQGSSSRGPEAQPDVTERALLQHENEVVH 528
Cdd:pfam05483 549 ELESVREEFIQKG------------------------------DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 529 RRnSEIDELKSLIENLQENQRQLQKDKAEEIEQL--HEV-IEKLQSELSLMGPKVHEVSDPQAGSLhsELACLRGEGLGG 605
Cdd:pfam05483 599 LK-KQIENKNKNIEELHQENKALKKKGSAENKQLnaYEIkVNKLELELASAKQKFEEIIDNYQKEI--EDKKISEEKLLE 675
|
490
....*....|....
gi 1907073931 606 QALRSELQAAQAAK 619
Cdd:pfam05483 676 EVEKAKAIADEAVK 689
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1224-1599 |
1.15e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1224 LVQRLEKVIQEQGDPQKVQDHLCLSDRSSLLAEIQALRAQLRmTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 1303
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1304 AYK--VEQEKCIANELQ------KTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENT--------SLLESLDKVQ 1367
Cdd:COG4717 126 QLLplYQELEALEAELAelperlEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlateeelqDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1368 QEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQL------- 1440
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1441 --CVALKHERAAKDNLQKELQIEASRCEALLAQE--KGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACA 1516
Cdd:COG4717 286 laLLFLLLAREKASLGKEAEELQALPALEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1517 RQETQVQHALLRKLKAEKTRALELEAM----LEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQ 1592
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEEELRAALEqaeeYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELE 445
|
....*..
gi 1907073931 1593 RLVRELR 1599
Cdd:COG4717 446 EELEELR 452
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
193-473 |
1.26e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 193 TAKGLLEGFKVEKVDLQEALGK-KEESEQQLILELEDLRKQLQQAARELLTLKEEKSvlwnQKETLTNEAKEREAGSPVL 271
Cdd:pfam10174 436 TALTTLEEALSEKERIIERLKEqREREDRERLEELESLKKENKDLKEKVSALQPELT----EKESSLIDLKEHASSLASS 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 272 PAHKDT-------ALQEEVESLTRVQWESRK-----QSEKDRATLLSQMRVLESELEDQLVQHRGC-AQLAEEVATLKQq 338
Cdd:pfam10174 512 GLKKDSklksleiAVEQKKEECSKLENQLKKahnaeEAVRTNPEINDRIRLLEQEVARYKEESGKAqAEVERLLGILRE- 590
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 339 lAALDKHLRSQR---------QFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLqEKLR 409
Cdd:pfam10174 591 -VENEKNDKDKKiaelesltlRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGAL-EKTR 668
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907073931 410 EKLDgfnelVIKKDFADQQLLIQEEEikrleetnasiqRQMVQLQEELEKQKKSMEELKEKEIL 473
Cdd:pfam10174 669 QELD-----ATKARLSSTQQSLAEKD------------GHLTNLRAERRKQLEEILEMKQEALL 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
279-578 |
1.90e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 279 LQEEVESLTRVqwESRKQSEKDRA-TLLSQMRVLESELEDQLVQ-HRGCAQLAEEVATLKQQLAALdkhlRSQRQFMDDQ 356
Cdd:TIGR02169 679 LRERLEGLKRE--LSSLQSELRRIeNRLDELSQELSDASRKIGEiEKEIEQLEQEEEKLKERLEEL----EEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 357 AAEREHEREEFQQEIQRLE---GQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQE 433
Cdd:TIGR02169 753 IENVKSELKELEARIEELEedlHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 434 EEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLlltTVSRSGLDEagcpmlpqgsSSRGPEAQPD 513
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL---ESRLGDLKK----------ERDELEAQLR 899
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907073931 514 VTERAlLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEE---------IEQLHEVIEKLQSELSLMGP 578
Cdd:TIGR02169 900 ELERK-IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeeelsLEDVQAELQRVEEEIRALEP 972
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
115-463 |
2.03e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 115 QPIRRVYQSLSTAVEGLLEMALDSS--KQLEEARQLHRCVEREFrhrnEEMAQAMQKQQELLERLREESAAKDRLALELH 192
Cdd:COG3096 809 QKLQRLHQAFSQFVGGHLAVAFAPDpeAELAALRQRRSELEREL----AQHRAQEQQLRQQLDQLKEQLQLLNKLLPQAN 884
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 193 TakgLLEGFKVEKVD-LQEALGKKEESEQQL------ILELEDLRKQLQ-------QAARELLTLKEEKSVLWNQKETLT 258
Cdd:COG3096 885 L---LADETLADRLEeLREELDAAQEAQAFIqqhgkaLAQLEPLVAVLQsdpeqfeQLQADYLQAKEQQRRLKQQIFALS 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 259 NEAKEREAgspvlpahkdTALQEEVESLTrvqwESRKQSEKDRAtllsQMRVLESELEDQLVQHRgcaQLAEEVATLKQQ 338
Cdd:COG3096 962 EVVQRRPH----------FSYEDAVGLLG----ENSDLNEKLRA----RLEQAEEARREAREQLR---QAQAQYSQYNQV 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 339 LAALDKHLRSQRQFMDDqaaerehereeFQQEIQRLEgqlrqaarprppgprdsqcVQLDEEVEllqEKLREKLDGFNEL 418
Cdd:COG3096 1021 LASLKSSRDAKQQTLQE-----------LEQELEELG-------------------VQADAEAE---ERARIRRDELHEE 1067
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1907073931 419 VI----KKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKS 463
Cdd:COG3096 1068 LSqnrsRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAG 1116
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
122-247 |
3.16e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGF 201
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907073931 202 KVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 247
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
130-471 |
3.33e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 130 GLLEMALDSSKQLEEARQLhrcvEREFRHRNEEMAQAMQKQQELLERLREE-SAAKDRLALeLHTAKGLLEgfKVEK--- 205
Cdd:COG3096 282 ELSERALELRRELFGARRQ----LAEEQYRLVEMARELEELSARESDLEQDyQAASDHLNL-VQTALRQQE--KIERyqe 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 206 ------VDLQEALGKKEESEQQLI----------LELEDLRKQL---QQAARELLT-----------LKEEKSVLWNQKE 255
Cdd:COG3096 355 dleeltERLEEQEEVVEEAAEQLAeaearleaaeEEVDSLKSQLadyQQALDVQQTraiqyqqavqaLEKARALCGLPDL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 256 TLTNeAKEREAgspVLPAHKDTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELED-------QLVQHRGCAQL 328
Cdd:COG3096 435 TPEN-AEDYLA---AFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQawqtareLLRRYRSQQAL 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 329 AEEVATLKQQLAALDKHLRSqrqfmddqaaerehereefQQEIQRLEGQLRQaarprppgpRDSQCVQLDEEVELLQEKl 408
Cdd:COG3096 511 AQRLQQLRAQLAELEQRLRQ-------------------QQNAERLLEEFCQ---------RIGQQLDAAEELEELLAE- 561
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907073931 409 rekldgfnelvikkdfadqqlliQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKE 471
Cdd:COG3096 562 -----------------------LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARA 601
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
402-476 |
3.47e-03 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 40.96 E-value: 3.47e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907073931 402 ELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEE-LKEKEILKQE 476
Cdd:pfam06785 79 ELDAEGFKILEETLEELQSEEERLEEELSQKEEELRRLTEENQQLQIQLQQISQDFAEFRLESEEqLAEKQLLINE 154
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1166-1396 |
3.97e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1166 SQALSEVTTDKGE-KESLETHLTWSEELLRAIQEVFAR----EQEKAELQPRpYGSNLGDYNSLVQRLEKVIQEQGD--- 1237
Cdd:TIGR02168 294 ANEISRLEQQKQIlRERLANLERQLEELEAQLEELESKldelAEELAELEEK-LEELKEELESLEAELEELEAELEEles 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1238 -PQKVQDHL--CLSDRSSLLAEIQALRAQLRmthlQNQEKLQQLCAALTSTEARGSQREHQLRR-QVELLAYKVEQEKCI 1313
Cdd:TIGR02168 373 rLEELEEQLetLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1314 ANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSL---LESLDKVQQEVLRLRAVLDGKEKELKVVLEE 1390
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLerlQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
....*.
gi 1907073931 1391 LESERG 1396
Cdd:TIGR02168 529 ISVDEG 534
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1273-1526 |
4.51e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.35 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1273 EKLQQLCAALTS-TEARGSQREHQLRRQVellaykVEQEKCIANELQKTLSKEQETASDVRKRLvveqnAVQDLKSELha 1351
Cdd:PRK10929 45 EIVEALQSALNWlEERKGSLERAKQYQQV------IDNFPKLSAELRQQLNNERDEPRSVPPNM-----STDALEQEI-- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1352 cKQENTSLLESLDKVQQEVLRLRAVLD------GKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRA-LE 1424
Cdd:PRK10929 112 -LQVSSQLLEKSRQAQQEQDRAREISDslsqlpQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKAlVD 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1425 ELKLSlekQLAQNN-QLCVALKHERAAKDNLQKELQIEASRC--------EA--------LLAQEKGQLSE-LQKSLEAE 1486
Cdd:PRK10929 191 ELELA---QLSANNrQELARLRSELAKKRSQQLDAYLQALRNqlnsqrqrEAeralesteLLAEQSGDLPKsIVAQFKIN 267
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907073931 1487 RSRSLELSEALQHERLLTEQlsrnsQEACARQETQVQHAL 1526
Cdd:PRK10929 268 RELSQALNQQAQRMDLIASQ-----QRQAASQTLQVRQAL 302
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1263-1592 |
5.10e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1263 QLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVEllayKVEQEKCIANELQKTLSKEQETASDVRKRlVVEQNAV 1342
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLE----EAEKARQAEMDRQAAIYAEQERMAMERER-ELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1343 QDLKSELHACKQENTSLlesldkvqqEVLRLRAvldgkekelkvvLEELESERGKGQALQAQQEEQQLRYLQREGQSSRA 1422
Cdd:pfam17380 356 EERKRELERIRQEEIAM---------EISRMRE------------LERLQMERQQKNERVRQELEAARKVKILEEERQRK 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1423 LEELKLSLEKQLAQNNQLcvalKHERAAKDNLQKELQIEASRCEAllaQEKGQLSELQKSLEAERSRSLELSEALQHERL 1502
Cdd:pfam17380 415 IQQQKVEMEQIRAEQEEA----RQREVRRLEEERAREMERVRLEE---QERQQQVERLRQQEEERKRKKLELEKEKRDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1503 LTEQLSRN--SQEACARQETQVQHALLRKL-------------KAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCV 1567
Cdd:pfam17380 488 RAEEQRRKilEKELEERKQAMIEEERKRKLlekemeerqkaiyEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
330 340
....*....|....*....|....*
gi 1907073931 1568 ELRREKERELEIQRQRDEHKIEQLQ 1592
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARAEYE 592
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
225-460 |
5.25e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 225 ELEDLRKQLQQAARELLTLK--EEKSVLWNQKETLTNEAKEREAGSPVLPAHKDTALQEEVESLTRVQWESRKQSEKDRA 302
Cdd:COG4913 236 DLERAHEALEDAREQIELLEpiRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 303 TLLSQMRVLESELEDQLVQHRG--CAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRq 380
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 381 aarprppgprdsqcvQLDEEVELLQEKLREKLDGFNELvikkdfaDQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQ 460
Cdd:COG4913 395 ---------------ALEEELEALEEALAEAEAALRDL-------RRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
131-470 |
5.55e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 131 LLEMALDS-SKQLEEARQLHRCVEREFrhrnEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQ 209
Cdd:pfam05483 381 IITMELQKkSSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 210 EALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKE------REAGSPVLPAHKDTALQEEV 283
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtlelkKHQEDIINCKKQEERMLKQI 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 284 ESLTRVQWESRKQSEKDRATLLSQMRVLESELEDqlvQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddQAAEREHE 363
Cdd:pfam05483 537 ENLEEKEMNLRDELESVREEFIQKGDEVKCKLDK---SEENARSIEYEVLKKEKQMKILENKCNNLKK----QIENKNKN 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 364 REEFQQEIQRLEGqlRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLL--------IQEEE 435
Cdd:pfam05483 610 IEELHQENKALKK--KGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLeevekakaIADEA 687
|
330 340 350
....*....|....*....|....*....|....*
gi 1907073931 436 IKRLEETNASIQRQMVQLQEELEKQKKSMEELKEK 470
Cdd:pfam05483 688 VKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEE 722
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1112-1485 |
5.77e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1112 AMKEKEIHAKQMKALLQmvfdeshQILALSESQDPSSALNKGEprdpLDGFPRDSQALSEVTTDKGEKESLETHLTWSEE 1191
Cdd:pfam12128 187 AMHSKEGKFRDVKSMIV-------AILEDDGVVPPKSRLNRQQ----VEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1192 LLRAIQ----EVFAREQEKAELQPRpYGSNLGDYNSLVQRLEKVIQEQGDPQKvqdhlclSDRSSLLAEIQALRAQLRMT 1267
Cdd:pfam12128 256 AELRLShlhfGYKSDETLIASRQEE-RQETSAELNQLLRTLDDQWKEKRDELN-------GELSAADAAVAKDRSELEAL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1268 hlqnQEKLQQLCAALTSTEARGSQREHQLRRQVEllaykvEQEKCIANELQKTLSKEQETasDVRKRLVVEQNA--VQDL 1345
Cdd:pfam12128 328 ----EDQHGAFLDADIETAAADQEQLPSWQSELE------NLEERLKALTGKHQDVTAKY--NRRRSKIKEQNNrdIAGI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1346 KSELHACKQENTSLLESL-DKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREgQSSRALE 1424
Cdd:pfam12128 396 KDKLAKIREARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLE-NFDERIE 474
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907073931 1425 ELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQieasRCEALLAQEKGQLSELQKSLEA 1485
Cdd:pfam12128 475 RAREEQEAANAEVERLQSELRQARKRRDQASEALR----QASRRLEERQSALDELELQLFP 531
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
1451-1589 |
7.22e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.54 E-value: 7.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1451 KDNLQKELQI-----------EASRCEALLAQE-KGQLsELQK---SLEAERSRS--LEL---SEALQHERLLTEQLSRN 1510
Cdd:PTZ00491 646 RDSLQKSVQLaieittksqeaAARHQAELLEQEaRGRL-ERQKmhdKAKAEEQRTklLELqaeSAAVESSGQSRAEALAE 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1511 SQEACARQETQVQHALLRklkAEKTRaLELEAMLEKVQKQaahtqqqleaqaqeRCVELRREKER-ELEIQRQRDEHKIE 1589
Cdd:PTZ00491 725 AEARLIEAEAEVEQAELR---AKALR-IEAEAELEKLRKR--------------QELELEYEQAQnELEIAKAKELADIE 786
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
225-470 |
7.47e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 225 ELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKereagspvlpahkdtaLQEEVESLTRVQweSRKQSEKDRATL 304
Cdd:COG3206 183 QLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQ----------------LSELESQLAEAR--AELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 305 LSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMddqaaereherEEFQQEIQRLEGQLRQAARp 384
Cdd:COG3206 245 LRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDV-----------IALRAQIAALRAQLQQEAQ- 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 385 rppgprdSQCVQLDEEVELLQEKLREkldgfnelvikkdfADQQLLIQEEEIKRLeetnASIQRQMVQLQEELEKQKKSM 464
Cdd:COG3206 313 -------RILASLEAELEALQAREAS--------------LQAQLAQLEARLAEL----PELEAELRRLEREVEVARELY 367
|
....*.
gi 1907073931 465 EELKEK 470
Cdd:COG3206 368 ESLLQR 373
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
143-263 |
7.75e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 143 EEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEgFKVEKVDLQEALGKKEESEQQL 222
Cdd:PRK12704 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE-QKQQELEKKEEELEELIEEQLQ 142
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1907073931 223 ILE------LEDLRKQLQQAAREllTLKEEKSVLWNQKEtltNEAKE 263
Cdd:PRK12704 143 ELErisgltAEEAKEILLEKVEE--EARHEAAVLIKEIE---EEAKE 184
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
1484-1597 |
7.93e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 41.01 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1484 EAERSRSLELSEALQHERLLTEQLSRNSQEACARQETQV---QHALLRKLKAEKTRALELEAMLEKVQ-KQAAHTQQQLE 1559
Cdd:COG2268 196 EIIRDARIAEAEAERETEIAIAQANREAEEAELEQEREIetaRIAEAEAELAKKKAEERREAETARAEaEAAYEIAEANA 275
|
90 100 110
....*....|....*....|....*....|....*...
gi 1907073931 1560 AQAQERCVELrREKERELEIQRQRDEHKIEQLQRLVRE 1597
Cdd:COG2268 276 EREVQRQLEI-AEREREIELQEKEAEREEAELEADVRK 312
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1304-1512 |
8.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1304 AYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSE--LHACKQENTSLLESLDKVQQEVLRLRAVLDGKE 1381
Cdd:COG3206 160 AYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 1382 KELKVVLEELESERGKGQALQAQQEeqQLRYLQREGQSSRALEElklsLEKQLAQNNQLCVALKHERAA-KDNLQKELQI 1460
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQSPV--IQQLRAQLAELEAELAE----LSARYTPNHPDVIALRAQIAAlRAQLQQEAQR 313
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907073931 1461 EASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQ 1512
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
160-481 |
8.40e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 160 NEEMAQAMQKQQELlerlrEESAAK-DRLALELHTAKGLLEGFKVEKV-----DLQEALGKKEESEQQLILELEDLRKQL 233
Cdd:TIGR04523 263 NKIKKQLSEKQKEL-----EQNNKKiKELEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKII 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 234 QQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLPAHKDTALQE---------EVESLTRVQWESRKQSEKDRATL 304
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesqinDLESKIQNQEKLNQQKDEQIKKL 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 305 LSQMRVLESELEDQLVQHrgcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEF----------QQEIQRL 374
Cdd:TIGR04523 418 QQEKELLEKEIERLKETI---IKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSInkikqnleqkQKELKSK 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 375 EGQLRQAarprppgprDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKR---------LEETNAS 445
Cdd:TIGR04523 495 EKELKKL---------NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkkenLEKEIDE 565
|
330 340 350
....*....|....*....|....*....|....*.
gi 1907073931 446 IQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDL 481
Cdd:TIGR04523 566 KNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
140-694 |
9.55e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 9.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 140 KQLEEARQLHRCVEREFrhrnEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 219
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 220 QQL---ILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLpahkdTALQEEVESLTRVQWESRKQ 296
Cdd:PRK03918 262 RELeerIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL-----SRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 297 SEKdratlLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSqrqfmddqaaerehereefqQEIQRLEG 376
Cdd:PRK03918 337 EER-----LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG--------------------LTPEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 377 QLRQAARPRppgprdsqcvqldEEVELLQEKLREKLDGFNELVIKKDFADQQL------------LIQEEEIKRLEETN- 443
Cdd:PRK03918 392 ELEELEKAK-------------EEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEEYt 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 444 ---ASIQRQMVQLQEELEKQKKSMEEL-----KEKEILKQENMGDLLLTTvsRSGLDEAGCPMLpqgssSRGPEAQPDVT 515
Cdd:PRK03918 459 aelKRIEKELKEIEEKERKLRKELRELekvlkKESELIKLKELAEQLKEL--EEKLKKYNLEEL-----EKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 516 ERAL-LQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEV----IEKLQSELSLMGPkvhevsdpqags 590
Cdd:PRK03918 532 EKLIkLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEP------------ 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 591 LHSELACLRGeglGGQALRSELQAAQAAKEVFGQLLADQAhGHSQALEALQQRLQDAE--------EVAARHLAELEHCV 662
Cdd:PRK03918 600 FYNEYLELKD---AEKELEREEKELKKLEEELDKAFEELA-ETEKRLEELRKELEELEkkyseeeyEELREEYLELSREL 675
|
570 580 590
....*....|....*....|....*....|..
gi 1907073931 663 ALREAEVEAMASQIQEFAATLKAKEAIIEQRD 694
Cdd:PRK03918 676 AGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
137-323 |
9.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 137 DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDR---------LALELHTAKGLLEGFKVEKVD 207
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073931 208 LQEAlgkkEESEQQLILELEDLRKQLQQAARELLTLKEEksvlWNQKETLTNEAKEREAGSPVLPAHKDTALQEEV---E 284
Cdd:COG4913 687 LAAL----EEQLEELEAELEELEEELDELKGEIGRLEKE----LEQAEEELDELQDRLEAAEDLARLELRALLEERfaaA 758
|
170 180 190
....*....|....*....|....*....|....*....
gi 1907073931 285 SLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR 323
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFN 797
|
|
| |
