uncharacterized protein C4orf54 homolog isoform X1 [Mus musculus]
Protein Classification
DUF4585 domain-containing protein( domain architecture ID 10633617)
DUF4585 domain-containing protein similar to Homo sapiens protein C4orf54 (also called familial obliterative portal venopathy or FOPV)
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||||
| DUF4585 | pfam15232 | Domain of unknown function (DUF4585); The function of this protein domain family is yet to be ... |
1604-1667 | 8.74e-25 | ||||||
Domain of unknown function (DUF4585); The function of this protein domain family is yet to be characterized. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells. : Pssm-ID: 464574 [Multi-domain] Cd Length: 73 Bit Score: 99.37 E-value: 8.74e-25
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| MSCRAMM_ClfB super family | cl41468 | MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ... |
142-469 | 5.28e-03 | ||||||
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif. The actual alignment was detected with superfamily member NF033845: Pssm-ID: 468203 [Multi-domain] Cd Length: 871 Bit Score: 41.86 E-value: 5.28e-03
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| Name | Accession | Description | Interval | E-value | ||||||
| DUF4585 | pfam15232 | Domain of unknown function (DUF4585); The function of this protein domain family is yet to be ... |
1604-1667 | 8.74e-25 | ||||||
Domain of unknown function (DUF4585); The function of this protein domain family is yet to be characterized. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells. Pssm-ID: 464574 [Multi-domain] Cd Length: 73 Bit Score: 99.37 E-value: 8.74e-25
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| MSCRAMM_ClfB | NF033845 | MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ... |
142-469 | 5.28e-03 | ||||||
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif. Pssm-ID: 468203 [Multi-domain] Cd Length: 871 Bit Score: 41.86 E-value: 5.28e-03
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| Name | Accession | Description | Interval | E-value | ||||||
| DUF4585 | pfam15232 | Domain of unknown function (DUF4585); The function of this protein domain family is yet to be ... |
1604-1667 | 8.74e-25 | ||||||
Domain of unknown function (DUF4585); The function of this protein domain family is yet to be characterized. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells. Pssm-ID: 464574 [Multi-domain] Cd Length: 73 Bit Score: 99.37 E-value: 8.74e-25
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| MSCRAMM_ClfB | NF033845 | MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ... |
142-469 | 5.28e-03 | ||||||
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif. Pssm-ID: 468203 [Multi-domain] Cd Length: 871 Bit Score: 41.86 E-value: 5.28e-03
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