|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-602 |
1.19e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 1.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 260 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQ 339
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELE----ELEAELAELEAELEELR-LELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 340 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAV 419
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 420 RLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEE 499
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 500 SLQQQQQEQEETLKLCRE-----EHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSA 574
Cdd:COG1196 454 LEEEEEALLELLAELLEEaalleAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAV 528
|
330 340
....*....|....*....|....*...
gi 1720435462 575 VLKDLKRqlhLERKRADKLQERLQEILT 602
Cdd:COG1196 529 LIGVEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-495 |
1.79e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 1.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 206 LKWEMEREEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEAdLKAQLARTQKLQQELEAAN 285
Cdd:COG1196 232 LKLRELEAELEELEAELE--ELEAELEELEAELAELEAELEEL----RLELEELELELEE-AQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 286 QSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 365
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 366 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHE 443
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLeeELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1720435462 444 DKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG-AKGWFERRLK 495
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLL 516
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
256-601 |
1.80e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 1.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 256 IEELQQRKEAdLKAQlART----QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSEL 331
Cdd:COG1196 195 LGELERQLEP-LERQ-AEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 332 ASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQ 411
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE-EELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 412 HKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKART---RELENLQHTVEELQAQVHSMDGAKG 488
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEeleEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 489 WFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRIL 568
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
330 340 350
....*....|....*....|....*....|...
gi 1720435462 569 EKKGSAVLKDLKRQLHLERKRADKLQERLQEIL 601
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-602 |
2.61e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 2.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 260 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTaktqelnmLREQTSELASELQHRQ 339
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELE----ELTAELQELEEKLEE--------LRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 340 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAV 419
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 420 RLRHEKeLLGVRARYERELRELHEdKKRQEEELRGQIREEKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKEAEE 499
Cdd:TIGR02168 368 EELESR-LEELEEQLETLRSKVAQ-LELQIASLNNEIERLEAR---LERLEDRRERLQQEI----------EELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 500 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVlkdl 579
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV---- 508
|
330 340
....*....|....*....|...
gi 1720435462 580 kRQLHLERKRADKLQERLQEILT 602
Cdd:TIGR02168 509 -KALLKNQSGLSGILGVLSELIS 530
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
251-596 |
2.98e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 2.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 251 DSRNKIEELQQR-KEADLKAQLARTQ--KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAkTQELNMLREQ 327
Cdd:TIGR02169 174 KALEELEEVEENiERLDLIIDEKRQQleRLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI-ERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 328 TSELASELQHRQAEYEELMGQKDDLNSQLQ-----ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvMLDELA 402
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 403 METLQEKSQHKEELGAVRLRHEK---ELLGVRARYERELRELHEdkkrQEEELRGQIREEKARTRELENLQHTVEELQAQ 479
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEE----VDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 480 vhsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHA---AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQ 556
Cdd:TIGR02169 408 -----------LDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1720435462 557 EvkdtvdgQRILEKKgsavLKDLKRQLHLERKRADKLQER 596
Cdd:TIGR02169 477 E-------YDRVEKE----LSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
204-495 |
2.25e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 204 VELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQT----------EKETLFNDSRNKIEELQQRKEAdLKAQLAR 273
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEeleqlrkeleELSRQISALRKDLARLEAEVEQ-LEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 274 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELaselqhrQAEYEELMGQKDDLN 353
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDEL-------RAELTLLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 354 SQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET---LQEKSQHKEELGAVRLRHEKELLGV 430
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720435462 431 RA---------RYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhTVEELQAQVHSMDGAKGWFERRLK 495
Cdd:TIGR02168 904 REleskrselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
253-600 |
2.25e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 253 RNKIEELqqrkEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerlehaaaLRALQDQIQTaKTQELNMLREQTSELA 332
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEE-----------LEQLRKELEE-LSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 333 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMetlqEKSQH 412
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA----ELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 413 KEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELrgqireeKARTRELENLQHTVEELQAQVHSMDGAKGWFER 492
Cdd:TIGR02168 816 NEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDI-------ESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 493 RLKEAEESLQQQQQEqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVkdTVDGQRILEKKG 572
Cdd:TIGR02168 888 ALALLRSELEELSEE--------LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAE 957
|
330 340
....*....|....*....|....*...
gi 1720435462 573 SAVLKDLKRQLHLERkRADKLQERLQEI 600
Cdd:TIGR02168 958 ALENKIEDDEEEARR-RLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-600 |
1.66e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 57 LRQKVAYLDKEFSKAQK--ALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNST---LMAEFSKLCSQLEQLELENR 131
Cdd:COG1196 198 LERQLEPLERQAEKAERyrELKEELKELEAELLLLKLRELEAELEELEAELEELEAEleeLEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 132 QLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEgqgdppgdvlptplapmplAEVELKWEME 211
Cdd:COG1196 278 ELEL-----ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE-------------------ELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 212 REEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQ--LARTQKLQQELEAANQSLA 289
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALraAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 290 ELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQ---TSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRL 366
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEaelEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 367 LEQLQEIGQ---------------EKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVR 431
Cdd:COG1196 494 LLLLEAEADyegflegvkaalllaGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 432 A----------------------------RYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSM 483
Cdd:COG1196 574 AtflpldkiraraalaaalargaigaavdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 484 DG--AKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDT 561
Cdd:COG1196 654 EGgsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
570 580 590
....*....|....*....|....*....|....*....
gi 1720435462 562 VDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEI 600
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
264-484 |
2.12e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 2.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 264 EADLKAQLARTQKLQQELEAANQSLAELRDQR--------QGERLEHAAALRALQDQIQTA-----KTQELNMLREQTSE 330
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIellepireLAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 331 LASELQHRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI-GQEKEQLTQDLQEARKSAEKRKVMLDELAmetlqek 409
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDE-------LEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE------- 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720435462 410 sQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMD 484
Cdd:COG4913 366 -ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-466 |
3.17e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 3.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 53 ELSSLRQKVAYLdkefskAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 132
Cdd:TIGR02168 678 EIEELEEKIEEL------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 133 lkegvpgaagahvdgellrLQAENTALQKNMAALQERYGKEAVRPSAVGEGqgdppgdvlptplapmpLAEVELKWEMER 212
Cdd:TIGR02168 752 -------------------LSKELTELEAEIEELEERLEEAEEELAEAEAE-----------------IEELEAQIEQLK 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 213 EEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLFNDSRNK---IEELQQRKE------ADLKAQLARTQKLQQELEA 283
Cdd:TIGR02168 796 EELKALREALD--ELRAELTLLNEEAANLRERLESLERRIAATerrLEDLEEQIEelsediESLAAEIEELEELIEELES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 284 ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAN 363
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 364 srlleqLQEIGQEKEQLTQDLQEARKSAEKrkvmldelametLQEKsqhKEELGAVRLRHEKELLGVRARYErELRELHE 443
Cdd:TIGR02168 953 ------LEEAEALENKIEDDEEEARRRLKR------------LENK---IKELGPVNLAAIEEYEELKERYD-FLTAQKE 1010
|
410 420
....*....|....*....|...
gi 1720435462 444 DKKRQEEELRGQIREEKARTREL 466
Cdd:TIGR02168 1011 DLTEAKETLEEAIEEIDREARER 1033
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
209-438 |
1.97e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 1.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 209 EMEREEKKLlwEQLQGL-ELSEKLKKKQESFCRLQTEKETLfndsrnKIEELQQRKEAdLKAQLARtqkLQQELEAANQS 287
Cdd:COG4913 243 ALEDAREQI--ELLEPIrELAERYAAARERLAELEYLRAAL------RLWFAQRRLEL-LEAELEE---LRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 288 LAELRDQRQgerlEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL 367
Cdd:COG4913 311 LERLEARLD----ALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435462 368 EQLQEIGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYEREL 438
Cdd:COG4913 387 AEAAALLEALEEELEALEEALAEAEAAL----RDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
207-465 |
2.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 207 KWEMEREEKKLLWEQLQGLELS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQ-------QRKEADLKAQLARTQKLQ 278
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEElEKLTEEISELEKRLEEIEQLLEELNKKIKDLGeeeqlrvKEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 279 QELEAANQSLAELRDQRQGERLEHAAALRALQDQIQT-------------AKTQELNMLREQTSELASELQHRQAEYEEL 345
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdklteeyaELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 346 MGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHEK 425
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-IKKQEWKLEQLAADLSKYEQ 469
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1720435462 426 ELLGVRARYERELRELHEdKKRQEEELRGQIREEKARTRE 465
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSK-LQRELAEAEAQARASEERVRG 508
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
228-717 |
2.23e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 228 SEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAalr 307
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA--- 1400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 308 alqdQIQTAKTQELNMlREQTSELASELQHRQAEYEelmgQKDDLNSQLQESLRANSrlLEQLQEIGQEKEQLTQDLQEA 387
Cdd:PTZ00121 1401 ----EEDKKKADELKK-AAAAKKKADEAKKKAEEKK----KADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKKAEEA 1469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 388 RKSAEKRKVMLDELAMETLQEKSQH-KEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIR--EEKARTR 464
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEaKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKAD 1549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 465 ELENlqhtVEELQA--QVHSMDGAKGWFERR---LKEAEESLQQQQQEQEETLKLCREEHA--AELKGKDEELQNVREQL 537
Cdd:PTZ00121 1550 ELKK----AEELKKaeEKKKAEEAKKAEEDKnmaLRKAEEAKKAEEARIEEVMKLYEEEKKmkAEEAKKAEEAKIKAEEL 1625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 538 QQAQEERDGHVKTISNLKQEVKDTvDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEiltnskSRTGLEELVLSE 617
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKA-EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEA 1698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 618 MNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELS-DEEVAELFQRLAETQQEKWMLEEKVKH 696
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
490 500
....*....|....*....|.
gi 1720435462 697 LEVSSASMAEDLCRKSAIIET 717
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKK 1799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
269-480 |
1.02e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 269 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQiqtakTQELNMLREQTSELASELQHRQAEYEELMGQ 348
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 349 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavrlrheKELL 428
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--------AELA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1720435462 429 GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 480
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
229-488 |
1.68e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 229 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQrKEADLKAQLARTQKLQQELEAANQSLAELRDQ---RQGERLEHAAA 305
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISS-ELPELREELEKLEKEVKELEELKEEIEELEKElesLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 306 LRALQDQIQTAKtQELNMLREQTSELaSELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQ 385
Cdd:PRK03918 261 IRELEERIEELK-KEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 386 EARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRE 465
Cdd:PRK03918 339 RLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260
....*....|....*....|...
gi 1720435462 466 LENlqhTVEELQAQVHSMDGAKG 488
Cdd:PRK03918 417 LKK---EIKELKKAIEELKKAKG 436
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
272-459 |
2.07e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.96 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 272 ARTQKLQQELEAANQSLAELrdQRQGERLEH----AAALR-------ALQDQIQTAKtQELNMLREQTSELASELQHRQA 340
Cdd:COG3096 893 DRLEELREELDAAQEAQAFI--QQHGKALAQleplVAVLQsdpeqfeQLQADYLQAK-EQQRRLKQQIFALSEVVQRRPH 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 341 ----EYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQ----- 407
Cdd:COG3096 970 fsyeDAVGLLGENSDLNEKLRARLEqaeeARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgvqa 1049
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435462 408 ----------EKSQHKEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELRgQIREE 459
Cdd:COG3096 1050 daeaeerariRRDELHEELSQNRSR-RSQLEKQLTRCEAEMDSLQKRLRKAERDYK-QEREQ 1109
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
212-475 |
2.87e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 2.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 212 REEKKLLWEQLQGLElsEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQ 286
Cdd:COG4913 609 RAKLAALEAELAELE--EELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 287 SLAELRDQrqgerlehaaaLRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsRL 366
Cdd:COG4913 686 DLAALEEQ-----------LEELEAELEELE-EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LL 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 367 LEQLQEIGQEK--EQLTQDLQEARKSAEKRkvmLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHED 444
Cdd:COG4913 752 EERFAAALGDAveRELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPE-YLALLDRLEED 827
|
250 260 270
....*....|....*....|....*....|..
gi 1720435462 445 K-KRQEEELRGQIREEKarTRELENLQHTVEE 475
Cdd:COG4913 828 GlPEYEERFKELLNENS--IEFVADLLSKLRR 857
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-426 |
6.75e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 6.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 227 LSEKLKKKQESFCRLQTEKETLFNDsrnKIEELQQRKEAdLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 306
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLK---ELKELEEELKE-AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 307 RALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDLQE 386
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1720435462 387 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 426
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
229-415 |
7.40e-07 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 52.80 E-value: 7.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 229 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA 308
Cdd:pfam03528 11 AELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAVATVSENT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 309 LQDQIQTAKTQelnmLREQTSELASELQHRQAEYE-----ELMGQKDDLNSQLQESLRANSRLLEQLQEiGQEKEQLTQD 383
Cdd:pfam03528 91 KQEAIDEVKSQ----WQEEVASLQAIMKETVREYEvqfhrRLEQERAQWNQYRESAEREIADLRRRLSE-GQEEENLEDE 165
|
170 180 190
....*....|....*....|....*....|....
gi 1720435462 384 LQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 415
Cdd:pfam03528 166 MKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
66-580 |
8.95e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 8.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 66 KEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAGAHV 145
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 146 DGELLRLQAEntalQKNMAALQERYGKEAVRpsavgegqgdppgdvlptplapmplAEVELKWEMEREEKKLLWEQLQGL 225
Cdd:PTZ00121 1419 KADEAKKKAE----EKKKADEAKKKAEEAKK-------------------------ADEAKKKAEEAKKAEEAKKKAEEA 1469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 226 ELSEKLKKKQESfCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQS--------LAELRDQRQG 297
Cdd:PTZ00121 1470 KKADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkadeAKKAEEKKKA 1548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 298 ERLEHAAALRALQDQI---QTAKTQELNMLREQTSELASELQHRQAE-----YEELMGQKDDlNSQLQESLRANSRLLEQ 369
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKkaeEAKKAEEDKNMALRKAEEAKKAEEARIEevmklYEEEKKMKAE-EAKKAEEAKIKAEELKK 1627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 370 LQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavrlRHEKELlgvrARYERELRELHEDKKRQE 449
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK-----KKAEEA----KKAEEDEKKAAEALKKEA 1698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 450 EELRG--QIREEKA-RTRELENLQHTVEELQAQVHSMDgaKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGK 526
Cdd:PTZ00121 1699 EEAKKaeELKKKEAeEKKKAEELKKAEEENKIKAEEAK--KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 1720435462 527 DEELqnVREQLQQAQEERDGHV-KTISNLKQEVKDTVDGQrileKKGSAVLKDLK 580
Cdd:PTZ00121 1777 KEAV--IEEELDEEDEKRRMEVdKKIKDIFDNFANIIEGG----KEGNLVINDSK 1825
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
226-602 |
1.08e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 226 ELSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE----------ADLKAQLARTQKLQQELEAANQSLAELR 292
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERDdllaeaglddADAEAVEARREELEDRDEELRDRLEECR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 293 dQRQGERLEHAAALRALQDQIQTAKTQelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLqESLRA---------- 362
Cdd:PRK02224 335 -VAAQAHNEEAESLREDADDLEERAEE----LREEAAELESELEEAREAVEDRREEIEELEEEI-EELRErfgdapvdlg 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 363 -----NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE-------------LAMETLQEKSQHKEELGAVRLRHE 424
Cdd:PRK02224 409 naedfLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsPHVETIEEDRERVEELEAELEDLE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 425 KELLGVRARYER--ELRELH------EDKKRQEEELRGQIREEKARTRE-LENLQHTVEEL----QAQVHSMDGAKGWFE 491
Cdd:PRK02224 489 EEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAERRETIEEKRErAEELRERAAELeaeaEEKREAAAEAEEEAE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 492 RRLKEAEESLQQQQQEQEETLKLCR-EEHAAELKGKDEELQNVREQLQQAQE---ERDGHVKTISNLKQEVKDTVDGQRI 567
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLREKREALAElndERRERLAEKRERKRELEAEFDEARI 648
|
410 420 430
....*....|....*....|....*....|....*
gi 1720435462 568 LEKKGsavlkdlkrqlhlERKRADKLQERLQEILT 602
Cdd:PRK02224 649 EEARE-------------DKERAEEYLEQVEEKLD 670
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
255-479 |
2.21e-06 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 51.76 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 255 KIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAalRALQDQIqTAKTQELNMLREQTSELASE 334
Cdd:NF012221 1566 RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQRDAILEES--RAVTKEL-TTLAQGLDALDSQATYAGES 1642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 335 LQHRQAEYEElmGQKDDLNSQLQEslrANSRLLEQLQEIgqeKEQLTQDLQEARKSAEKRkvmldelamETLQEKSQHKe 414
Cdd:NF012221 1643 GDQWRNPFAG--GLLDRVQEQLDD---AKKISGKQLADA---KQRHVDNQQKVKDAVAKS---------EAGVAQGEQN- 1704
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720435462 415 elgavrlRHEKELLGVRARYERELRELHEDKKRQEEELR---GQIREEKARTR-ELENLQHTVEELQAQ 479
Cdd:NF012221 1705 -------QANAEQDIDDAKADAEKRKDDALAKQNEAQQAesdANAAANDAQSRgEQDASAAENKANQAQ 1766
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
255-712 |
2.76e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 255 KIEELQQRKEADLKAQLARtqklQQELEAANQSLAELRDQRQGERLEHAAALRALQDQiqtaKTQELNMLREQTSelASE 334
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAK----KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR----KADELKKAEEKKK--ADE 1294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 335 LqhRQAEYEElmgQKDDLNSQLQESLRANsRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETlqEKSQHKE 414
Cdd:PTZ00121 1295 A--KKAEEKK---KADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA--EAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 415 ELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRG--QIREEKARTRELENLQHTVEElqaqVHSMDGAKGWFER 492
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadELKKAAAAKKKADEAKKKAEE----KKKADEAKKKAEE 1442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 493 RLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVrEQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEK 570
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEakKADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 571 KGSAVLKDLKrqlhlERKRADKLQeRLQEILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIP 650
Cdd:PTZ00121 1522 KKADEAKKAE-----EAKKADEAK-KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720435462 651 -------------ARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKS 712
Cdd:PTZ00121 1596 evmklyeeekkmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
259-480 |
3.33e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 259 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHR 338
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 339 QAEYEELMGQKDDLNSQLQESlRANSRLLEQLQEIGQEKEQLTQDLQEarksaekrkvmlDELAMETLQeksqhkEELGA 418
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTP------------NHPDVIALR------AQIAA 302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435462 419 VRLRHEKELLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 480
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
372-625 |
4.30e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 4.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 372 EIGQEKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkellgvraryERELRELHEDKKRQE 449
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 450 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEE 529
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 530 LQNVREQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 609
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 1720435462 610 LEELVLSEMNSPSRTQ 625
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-394 |
4.62e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 4.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 196 LAPMPLAEVELKWEMEREEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQ 275
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIA--ELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 276 KLQQELEAANQSLAELRD---------QRQG-----------------------------ERLEHAAALRALQDQIQtAK 317
Cdd:COG4942 87 ELEKEIAELRAELEAQKEelaellralYRLGrqpplalllspedfldavrrlqylkylapARREQAEELRADLAELA-AL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720435462 318 TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 394
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
303-573 |
6.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 6.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 303 AAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQ 382
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 383 DLQEARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKELLgVRARYereLRELHEDKKRQEEELRGQIREEKAR 462
Cdd:COG4942 91 EIAELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 463 TRELENLQHTVEELQAQVhsmdgakgwferrlkeaeeslqQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQE 542
Cdd:COG4942 166 RAELEAERAELEALLAEL----------------------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250 260 270
....*....|....*....|....*....|.
gi 1720435462 543 ERDGHVKTISNLKQEVKDTVDGQRILEKKGS 573
Cdd:COG4942 224 ELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
54-780 |
9.10e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 9.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 54 LSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAK-----LHSQEEDFRLQNSTLMAEFSKLCSQLEQLEL 128
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELReeleeLQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 129 ENRQLKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERYgKEAVRPSAVGEGQgdppgdvlptplapmpLAEVELKW 208
Cdd:TIGR02168 275 EVSELEEEI-----EELQKELYALANEISRLEQQKQILRERL-ANLERQLEELEAQ----------------LEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 209 EMEREEKKLLWEQLQGL-ELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQqRKEADLKAQLARTQKLQQELEAANQS 287
Cdd:TIGR02168 333 DELAEELAELEEKLEELkEELESLEAELEELEAELEELESRLEELEEQLETLR-SKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 288 LAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRL- 366
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE---ELQEELERLEEALEELREELEEAEQALDAAERELAQLq 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 367 --LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLD------------ELAMET-LQEKSQH------KEELGAVRLRHEK 425
Cdd:TIGR02168 489 arLDSLERLQENLEGFSEGVKALLKNQSGLSGILGvlselisvdegyEAAIEAaLGGRLQAvvvenlNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 426 EL-----LGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhtVEELQAQVHSMDGAKGWFERRLKEAEES 500
Cdd:TIGR02168 569 ELgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA---LSYLLGGVLVVDDLDNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 501 L--------------QQQQQEQEETLKLCREEHAAELKGKDEELQnvrEQLQQAQEERDGHVKTISNLKQEVKDTVDGQR 566
Cdd:TIGR02168 646 RivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELE---EKIAELEKALAELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 567 ILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGL--------EELVLSEMNSPSRTQTGDSSSVSSFSYR 638
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELeerleeaeEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 639 EILKEKESSaipARSLSSSPQAQPPRPAELSDeEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIEty 718
Cdd:TIGR02168 803 EALDELRAE---LTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-- 876
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435462 719 VMDSRIDVSVAAGHTDRSGLGSVLRDLvKPGDENLREMNKKLQNMLEEQLTKNMHLHKASVD 780
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEELSEEL-RELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
213-594 |
1.17e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 213 EEKKLLWEQLQGLELSEK-LKKKQESFCRLQTEKETLfndsRNKIEELQQR-----KEADLKAQLARTQKLQQELEAANQ 286
Cdd:COG4717 71 KELKELEEELKEAEEKEEeYAELQEELEELEEELEEL----EAELEELREElekleKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 287 SLAELRDQRQgERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQ------ESL 360
Cdd:COG4717 147 RLEELEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEeaqeelEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 361 RANSRLLEQLQEIGQEKEQLTQDLQEAR------------KSAEKRKVMLDELAM-----------ETLQEKSQHKEELG 417
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEARLLLLiaaallallglgGSLLSLILTIAGVLFlvlgllallflLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 418 AVRLRHEKELLgVRARYERELRELHEDKKRQEEELRGQIR------------EEKARTRELENLQHTVEEL--QAQVHSM 483
Cdd:COG4717 306 ELQALPALEEL-EEEELEELLAALGLPPDLSPEELLELLDrieelqellreaEELEEELQLEELEQEIAALlaEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 484 DGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKD---EELQNVREQLQQAQEERDGHVKTISNLKQEVKD 560
Cdd:COG4717 385 EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeleEELEELEEELEELEEELEELREELAELEAELEQ 464
|
410 420 430
....*....|....*....|....*....|....
gi 1720435462 561 TVDGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 594
Cdd:COG4717 465 LEEDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-600 |
1.17e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 53 ELSSLRQKVAYLDKEFSKAQKALSKskKAQEVEVLLSENEMLQAKLHSQEEDF---RLQNSTLMAEFSKLCSQLEQLELE 129
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEE--LEAELEELESRLEELEEQLETLRSKVaqlELQIASLNNEIERLEARLERLEDR 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 130 NRQLKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERygkeavrpsavgegqgdppgdvlptplapmpLAEVELKWE 209
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE-------------------------------LERLEEALE 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 210 MEREEKKLLWEQLQGLELSEK-LKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEAD--LKAQLARTQKLQQELEA--- 283
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAqLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvLSELISVDEGYEAAIEAalg 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 284 -------------ANQSLAELRDQRQG---------------------ERLEHAAALRALQDQIQTAK------------ 317
Cdd:TIGR02168 545 grlqavvvenlnaAKKAIAFLKQNELGrvtflpldsikgteiqgndreILKNIEGFLGVAKDLVKFDPklrkalsyllgg 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 318 -------TQELNMLRE-----------------------QTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL 367
Cdd:TIGR02168 625 vlvvddlDNALELAKKlrpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR 704
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 368 EQLQEIGQEKEQLTQDLQEARksaekRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKR 447
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELS-----RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 448 QEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEET------LKLCREEHAA 521
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLeeqieeLSEDIESLAA 859
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720435462 522 ELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKgsavLKDLKRQLHLERKRADKLQERLQEI 600
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK----RSELRRELEELREKLAQLELRLEGL 934
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
203-344 |
1.45e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 203 EVELKWEMEREEKKLLWEQlqglELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQrKEADLKAQLARTQKLQQELE 282
Cdd:PRK12704 57 EALLEAKEEIHKLRNEFEK----ELRERRNELQKLEKRLLQKEENL----DRKLELLEK-REEELEKKEKELEQKQQELE 127
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435462 283 AANQSLAELRDQRQgERLEHAAALRALQdqiqtAKTQELNMLREQTSELASELQHrqaEYEE 344
Cdd:PRK12704 128 KKEEELEELIEEQL-QELERISGLTAEE-----AKEILLEKVEEEARHEAAVLIK---EIEE 180
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
241-544 |
2.83e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 241 LQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSlaelrdqRQGErLEHAAALRALQDQIQTAKTQE 320
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKA-------RQAE-MDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 321 LNMLREQTSELASElQHRQAEYEELMGQKddlnsqlqeslransRLLEQLQ-EIGQEKEQLTQDLQEARK-----SAEKR 394
Cdd:pfam17380 350 LERIRQEERKRELE-RIRQEEIAMEISRM---------------RELERLQmERQQKNERVRQELEAARKvkileEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 395 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELR----GQIREEKARTRELENLQ 470
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERkrkkLELEKEKRDRKRAEEQR 493
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720435462 471 HTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGkdEELQNVREQLQQAQEER 544
Cdd:pfam17380 494 RKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEM--EERRRIQEQMRKATEER 565
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
201-478 |
4.80e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 201 LAEVELKWEmEREEKKLLWEQLQGLELS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK---EADLKAQLARTQK 276
Cdd:PRK02224 484 LEDLEEEVE-EVEERLERAEDLVEAEDRiERLEERREDLEELIAERRETIEEKRERAEELRERAaelEAEAEEKREAAAE 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 277 LQQELEAANQSLAELRDQRQ--GERLEHAAALRALQDQIqTAKTQELNMLREQTSELAselqhrqaeyeelmgqkdDLNS 354
Cdd:PRK02224 563 AEEEAEEAREEVAELNSKLAelKERIESLERIRTLLAAI-ADAEDEIERLREKREALA------------------ELND 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 355 QLQEslransrlleQLQEIGQEKEQLTQDLQEARKSAEKRKvmlDELAMETLQEKSQHKEELGAVRLRHEKELLGVrary 434
Cdd:PRK02224 624 ERRE----------RLAEKRERKRELEAEFDEARIEEARED---KERAEEYLEQVEEKLDELREERDDLQAEIGAV---- 686
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1720435462 435 ERELRELhedkkrqeEELRGQIREEKARTRELENLQHTVEELQA 478
Cdd:PRK02224 687 ENELEEL--------EELRERREALENRVEALEALYDEAEELES 722
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-458 |
8.04e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 8.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 53 ELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 132
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 133 LKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPtplapmpLAEVELKWEMER 212
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-------LIGVEAAYEAAL 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 213 EEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARtqklqqELEAANQSLAELR 292
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV------DLVASDLREADAR 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 293 DQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQE 372
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 373 igQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEEL 452
Cdd:COG1196 695 --LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*.
gi 1720435462 453 RGQIRE 458
Cdd:COG1196 773 EREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
205-467 |
1.01e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 205 ELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQqRKEADLKAQLARTQKLQQELEAA 284
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALNDL 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 285 NQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANS 364
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 365 RLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELH 442
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELerKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
250 260
....*....|....*....|....*..
gi 1720435462 443 EDKKRQ--EEELRGQIREEKARTRELE 467
Cdd:TIGR02169 945 EIPEEElsLEDVQAELQRVEEEIRALE 971
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
201-388 |
1.15e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 201 LAEVELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKetlfNDSRNKIEELQQRKEADLKA-----QLARTQ 275
Cdd:COG3206 191 LEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL----AEAEARLAALRAQLGSGPDAlpellQSPVIQ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 276 KLQQELEAANQSLAELRdQRQGERlehAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQ 355
Cdd:COG3206 267 QLRAQLAELEAELAELS-ARYTPN---HPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
170 180 190
....*....|....*....|....*....|....*.
gi 1720435462 356 LQESLRANSRL--LEQLQEIGQEK-EQLTQDLQEAR 388
Cdd:COG3206 343 LAELPELEAELrrLEREVEVARELyESLLQRLEEAR 378
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
253-479 |
1.30e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 45.40 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 253 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQIQTAKTQEL 321
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 322 NMLREQTSElaselQHRQAEYEELMGQKDDLNS---QLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVML 398
Cdd:pfam05667 322 KVETEEELQ-----QQREEELEELQEQLEDLESsiqELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 399 --DELAMETLQEK----SQHKEELGAVRLRHEKELLgvrARYeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHT 472
Cdd:pfam05667 397 pdAEENIAKLQALvdasAQRLVELAGQWEKHRVPLI---EEY-RALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQ 472
|
....*..
gi 1720435462 473 VEELQAQ 479
Cdd:pfam05667 473 KEELYKQ 479
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-600 |
1.41e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 204 VELKWEMEREEKKLLWEQLQGLELSEKLKKKQ---ESFCRLQTEKETLFNDSRNKIEELQQRKEAD----LKAQLARTQK 276
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkeLKSELKNQEK 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 277 ----LQQELEAANQSLAELRDQRQGERLEhaaaLRALQDQIQTaKTQELNMLREQTSELASELQHRQAEYEELMGQKDDL 352
Cdd:TIGR04523 322 kleeIQNQISQNNKIISQLNEQISQLKKE----LTNSESENSE-KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 353 NSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKeELGAVRLRHEKELlgvrA 432
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK-NLDNTRESLETQL----K 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 433 RYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMdgakgwferrlkeaeeslqqqqQEQEETL 512
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL----------------------KEKIEKL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 513 KLCREEHAAELKGKDEELQNVREQLQQAQ--EERDGHVKTISNLKQEVKDTVDGQRILE---KKGSAVLKDLKRQLHLER 587
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKSLKKKQEEKQeliDQKEKEKKDLIKEIEEKE 609
|
410
....*....|...
gi 1720435462 588 KRADKLQERLQEI 600
Cdd:TIGR04523 610 KKISSLEKELEKA 622
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
215-601 |
1.42e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 215 KKLLWEQLQGLELSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAEL 291
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELkkqNNQLKDNIEKKQQEIN-EKTTEISNTQTQLNQLKDEQNKIKKQ 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 292 RDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQ 371
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEK---KLEEIQNQISQNNKIISQLNEQIS 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 372 EIGQEKEQLTQDLQEARKSAEKRKVMLDELametLQEKSQHKEELgaVRLRHEKELLgvraryERELRELHEDKKRQEEE 451
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEI--KNLESQINDL------ESKIQNQEKLNQQKDEQ 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 452 LRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFE------RRLKEAEESLQQQQQEQEETLKLCREEHAAELKG 525
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiknlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 526 KDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKR----------------------QL 583
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkkenlekeideknkeieEL 573
|
410
....*....|....*...
gi 1720435462 584 HLERKRADKLQERLQEIL 601
Cdd:TIGR04523 574 KQTQKSLKKKQEEKQELI 591
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
232-605 |
1.49e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 232 KKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQD 311
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQ 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 312 QIQTAKTQE--LNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARK 389
Cdd:TIGR00618 387 QKTTLTQKLqsLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 390 SAEKRKVMLDELAMETLQEKSQHKEElGAVRLRHEKEllgvraRYERELRELHEDKKRQeeelrgQIREEKARTRELENL 469
Cdd:TIGR00618 467 SLKEREQQLQTKEQIHLQETRKKAVV-LARLLELQEE------PCPLCGSCIHPNPARQ------DIDNPGPLTRRMQRG 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 470 QHTVEELQAQVHSMDGaKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVK 549
Cdd:TIGR00618 534 EQTYAQLETSEEDVYH-QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720435462 550 TISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 605
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
246-486 |
1.67e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 246 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlehaAALRALQDQIQTAKtQELNMLR 325
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAE-AEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 326 EQTSELASELQHRQAEY---EELMGQKD--DLNSQ---LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVM 397
Cdd:COG3883 86 EELGERARALYRSGGSVsylDVLLGSESfsDFLDRlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 398 LDELAMETLQEKSQHKEELgavrlrheKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 477
Cdd:COG3883 166 LEAAKAELEAQQAEQEALL--------AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237
|
....*....
gi 1720435462 478 AQVHSMDGA 486
Cdd:COG3883 238 AAAAAAASA 246
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
211-482 |
2.59e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 211 EREEKKLLWEQLQGLELSEKLKKKQESfcrlqtEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAE 290
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEI------EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 291 LRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQKDDLNSQLQESLRANSRLLEQL 370
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE-EELEKLQEKLEQLEEELLAKKKLESERL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 371 QEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEE 450
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270
....*....|....*....|....*....|..
gi 1720435462 451 ELRGQIREEKARTRELENLQHTVEELQAQVHS 482
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
261-700 |
2.98e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.35 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 261 QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ--DQIQTAKTQELNMLREQTSELASELQHR 338
Cdd:pfam05557 33 EKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKkyLEALNKKLNEKESQLADAREVISCLKNE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 339 QAEYE-ELMGQKDDLNSQLQESLRANSRLlEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELG 417
Cdd:pfam05557 113 LSELRrQIQRAELELQSTNSELEELQERL-DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFE-IQSQEQDSEIVK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 418 AVRLRhekelLGVRARYERELRELHEDKKRqeeelrgqireekartreLENLQHTVEELQAQVHSMdgakgwfERRLKEA 497
Cdd:pfam05557 191 NSKSE-----LARIPELEKELERLREHNKH------------------LNENIENKLLLKEEVEDL-------KRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 498 EESLQQQQQEQEETLKLCREEHAAELKGKDEEL-----QNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKG 572
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlrspEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 573 SAVLKDLKrQLHLERKRADKLQERLQ-EILTNSKSRTGLEELVLS---EMN----SPSRTQTGDSSSVSSFSY------- 637
Cdd:pfam05557 321 AQYLKKIE-DLNKKLKRHKALVRRLQrRVLLLTKERDGYRAILESydkELTmsnySPQLLERIEEAEDMTQKMqahneem 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435462 638 --------REILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 700
Cdd:pfam05557 400 eaqlsvaeEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
242-560 |
3.26e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 242 QTEKETLFNDSRNKIEELQQRKEADL-----KAQLARTQ--KLQQELE-----AANQS------LAELRDQRQGERLEHA 303
Cdd:pfam15921 255 QNKIELLLQQHQDRIEQLISEHEVEItglteKASSARSQanSIQSQLEiiqeqARNQNsmymrqLSDLESTVSQLRSELR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 304 AALRALQDQIQTaktqelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLranSRLLEQLQEIGQEKEQ---- 379
Cdd:pfam15921 335 EAKRMYEDKIEE--------LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---ADLHKREKELSLEKEQnkrl 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 380 LTQDLQEARKSAEKRKvMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYE--RELRELHEDKKRQEEELRGQIR 457
Cdd:pfam15921 404 WDRDTGNSITIDHLRR-ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 458 EEKARTRELENLQHTVEELQAQVHsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHaaeLKGKDEELQNVREQL 537
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQ---------EKERAIEATNAEITKLRSRVDLKLQELQH---LKNEGDHLRNVQTEC 550
|
330 340
....*....|....*....|...
gi 1720435462 538 QQAQEERDGHVKTISNLKQEVKD 560
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIEN 573
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
232-595 |
4.07e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 232 KKKQESFCRLQ-TEKET-------LFNDSR---NKIEELQQRKEADLKAQLARTQKLQQELEAANQSLaelrdQRQgerl 300
Cdd:pfam05483 238 KEKQVSLLLIQiTEKENkmkdltfLLEESRdkaNQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSL-----QRS---- 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 301 ehAAALRALQDQIQTAkTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE----QLQEIGQE 376
Cdd:pfam05483 309 --MSTQKALEEDLQIA-TKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEknedQLKIITME 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 377 KEQLTQDLQEARKSAEKRKVMLDELAM-----ETLQEKSQHKEELGAVRLRHEKELLGVRARYERELREL---------- 441
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNKEVELEELKKilaedEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLeiqltaikts 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 442 HEDKKRQEEELRGQIREEKARTRELENlqhTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAA 521
Cdd:pfam05483 466 EEHYLKEVEDLKTELEKEKLKNIELTA---HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720435462 522 ELKGKDeELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQE 595
Cdd:pfam05483 543 EMNLRD-ELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
322-612 |
4.56e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 322 NMLRE-QTSELASELQhrqAEYEELMGQKDDLnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 400
Cdd:COG4913 216 YMLEEpDTFEAADALV---EHFDDLERAHEAL-----EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 401 LAMETLQEKSQhkeelgavRLRHEKELLGVRaryERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQV 480
Cdd:COG4913 288 RRLELLEAELE--------ELRAELARLEAE---LERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 481 hsmdgakgwfERRLKEaeeslqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 560
Cdd:COG4913 355 ----------EERERR-------------------RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1720435462 561 TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 612
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
89-617 |
4.89e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 89 SENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAgAHVDGELLRLQAENTALQKNmaalQE 168
Cdd:pfam15921 292 SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI-EELEKQLVLANSELTEARTE----RD 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 169 RYGKEAvrpsavgeGQGDppgDVLPTPLAPMPLAEVELkwEMEREEKKLLWEQLQGLELS------------------EK 230
Cdd:pfam15921 367 QFSQES--------GNLD---DQLQKLLADLHKREKEL--SLEKEQNKRLWDRDTGNSITidhlrrelddrnmevqrlEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 231 LKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAElrDQRQGERLehAAALRALQ 310
Cdd:pfam15921 434 LLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES--SERTVSDL--TASLQEKE 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 311 DQIQtAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSqLQESLRANSRLLEQLQeigQEKEQLTQDLQEARKS 390
Cdd:pfam15921 510 RAIE-ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA-LKLQMAEKDKVIEILR---QQIENMTQLVGQHGRT 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 391 AEKRKVmldelametlqEKSQHKEELGAVRLRHeKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQ 470
Cdd:pfam15921 585 AGAMQV-----------EKAQLEKEINDRRLEL-QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 471 HTVEELQAQVHSMDGAKGWFERR---LKEAEESLQQQQQEQEETLKLcreehaaELKGKDEELQNVREQLqQAQEERDGH 547
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKM-------QLKSAQSELEQTRNTL-KSMEGSDGH 724
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720435462 548 -VKTISNLKQEV---KDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSE 617
Cdd:pfam15921 725 aMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
240-393 |
5.33e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 240 RLQTEKETLfNDSRNKIEELQQRK-----EADLKAQLARTQKLQQELEAANQSLAELRDQ----RQGERLEHAAALRALQ 310
Cdd:COG3206 183 QLPELRKEL-EEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARlaalRAQLGSGPDALPELLQ 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 311 DQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE-QLQEIGQEKEQLTQDLQEARK 389
Cdd:COG3206 262 SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEaELEALQAREASLQAQLAQLEA 341
|
....
gi 1720435462 390 SAEK 393
Cdd:COG3206 342 RLAE 345
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
226-411 |
5.65e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 226 ELSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRD---------QRQ 296
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDAL-QAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREelgeraralYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 297 GERLEHAAAL---RALQDQIQTAKTqeLNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEI 373
Cdd:COG3883 99 GGSVSYLDVLlgsESFSDFLDRLSA--LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 1720435462 374 GQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 411
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
229-607 |
6.22e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 229 EKLKKKQESFCRLQTEkETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSL-------AELRDQRQGERLE 301
Cdd:pfam12128 478 EEQEAANAEVERLQSE-LRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLlhflrkeAPDWEQSIGKVIS 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 302 HAAALRALQDQIQTAKT--QELNM----LREQTSELASELQHRQAEYEELmgqkDDLNSQLQESLRANSRLLEQLQEIGQ 375
Cdd:pfam12128 557 PELLHRTDLDPEVWDGSvgGELNLygvkLDLKRIDVPEWAASEEELRERL----DKAEEALQSAREKQAAAEEQLVQANG 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 376 EKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVraryERELRELHEDKKRQEEELRGQ 455
Cdd:pfam12128 633 ELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL----EAQLKQLDKKHQAWLEEQKEQ 708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 456 IREekARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAeeslqqqqqeqeetLKLCREEHAAELKGKDEELQNV-- 533
Cdd:pfam12128 709 KRE--ARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE--------------LKALETWYKRDLASLGVDPDVIak 772
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 534 ----REQLQQ--AQEERDGHVKTI-------------SNLKQEVKDTVDGQRILEKKGSAVLKDLKR---QLHLERKRAD 591
Cdd:pfam12128 773 lkreIRTLERkiERIAVRRQEVLRyfdwyqetwlqrrPRLATQLSNIERAISELQQQLARLIADTKLrraKLEMERKASE 852
|
410
....*....|....*.
gi 1720435462 592 KLQERLQEILTNSKSR 607
Cdd:pfam12128 853 KQQVRLSENLRGLRCE 868
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
251-543 |
6.74e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 251 DSRNKIEELQQRKEA---DLKAQLARTQKLQQELEAANQSLA----ELRDQRQGERLEhaAALRALqdqiqTAKTQELNM 323
Cdd:PRK04863 297 TSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNlvqtALRQQEKIERYQ--ADLEEL-----EERLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 324 LREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELam 403
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEE---EVDELKSQLADYQQA----LDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA-- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 404 ETLQEKSQHKEELGAVRLRHEKELLGV----RARYERELRELH--------EDKKRQEEELRGQIREEKARTRELENLQH 471
Cdd:PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVaqaaHSQFEQAYQLVRkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRM 520
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720435462 472 TVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQ---LQQAQEE 543
Cdd:PRK04863 521 RLSELEQRLRQQQRA-----ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERrmaLRQQLEQ 590
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
251-600 |
6.81e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 251 DSRNKIEELQQRKE---ADLKAQLARTQKLQQELEAANQSLAELRD-QRQGERLEH-AAALRALqdqiqTAKTQELNMLR 325
Cdd:COG3096 296 GARRQLAEEQYRLVemaRELEELSARESDLEQDYQAASDHLNLVQTaLRQQEKIERyQEDLEEL-----TERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 326 EqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEkrkvmLDELAMET 405
Cdd:COG3096 371 E---EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA----LDVQQTRAIQYQQAVQALEKARALCG-----LPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 406 L---QEKSQHKEELGAVRLRHEKELLGV----RARYERELREL--------HEDKKRQEEELRGQIREEKARTRELENLQ 470
Cdd:COG3096 439 AedyLAAFRAKEQQATEEVLELEQKLSVadaaRRQFEKAYELVckiageveRSQAWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 471 HTVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKT 550
Cdd:COG3096 519 AQLAELEQRLRQQQNA-----ERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720435462 551 ISNLKQEVKDTVDGQRILEKKGSAV---LKDLK-----RQLHLERKRA-----DKLQERLQEI 600
Cdd:COG3096 594 IKELAARAPAWLAAQDALERLREQSgeaLADSQevtaaMQQLLEREREatverDELAARKQAL 656
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
206-426 |
9.03e-04 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 42.36 E-value: 9.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 206 LKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFnDSRNKIEELQQRKEADLKAQLA-----RTQKLQQE 280
Cdd:pfam15742 81 LTAEWKHCQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSRVA-DAEEKILELQQKLEHAHKVCLTdtcilEKKQLEER 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 281 LEAANQSLAELRDQRQGERLEhaaalRALQDQIQTAKTQELNMLREQTSELA---SELQHRQAEYEELMGQKDDLNSQLQ 357
Cdd:pfam15742 160 IKEASENEAKLKQQYQEEQQK-----RKLLDQNVNELQQQVRSLQDKEAQLEmtnSQQQLRIQQQEAQLKQLENEKRKSD 234
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720435462 358 ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSaekrkvmLDELAMETLQEKSQHKEELGAVRLRHEKE 426
Cdd:pfam15742 235 EHLKSNQELSEKLSSLQQEKEALQEELQQVLKQ-------LDVHVRKYNEKHHHHKAKLRRAKDRLVHE 296
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
206-483 |
9.50e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 206 LKWEMEREEKKLLWEQLQGL-----ELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQE 280
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 281 LEAANQSLAELRDqrqgERLEHAAALRALQDQIQTaktqELNMLREQTSELASELQHRQAEYE------------ELMGQ 348
Cdd:pfam12128 324 LEALEDQHGAFLD----ADIETAAADQEQLPSWQS----ELENLEERLKALTGKHQDVTAKYNrrrskikeqnnrDIAGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 349 KDDLNSQLQESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAM---------ETLQEKSQHKEELGA 418
Cdd:pfam12128 396 KDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpELLLQLENFDERIER 475
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720435462 419 VRLRHEKEllgvRARYERELRELHEDKKRQEEELRgQIREEKARTRELEN-LQHTVEELQAQVHSM 483
Cdd:pfam12128 476 AREEQEAA----NAEVERLQSELRQARKRRDQASE-ALRQASRRLEERQSaLDELELQLFPQAGTL 536
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
53-482 |
1.03e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 53 ELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLhsQEEDFRLQN-STLMAEFSKLCSQLEQLELENR 131
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAEL--AELPERLEElEERLEELRELEEELEELEAELA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 132 QLKEGVPGAA---GAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEgqgdppgdvlptplapmPLAEVELKW 208
Cdd:COG4717 174 ELQEELEELLeqlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE-----------------ELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 209 EMEREEKKLLWEQLQGLELS-----EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEA 283
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 284 ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDlnsqlqESLRAN 363
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDE------EELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 364 SRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET-LQEKSQHKEELGAVRLRHEKELLGVRARYER-ELREL 441
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEeLEELEEELEELEEELEELREELAELEAELEQlEEDGE 470
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1720435462 442 HEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHS 482
Cdd:COG4717 471 LAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
226-598 |
1.10e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 226 ELSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEH 302
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIE-ELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 303 AAALRALQDQIQTAKTqelnmLRE-----------QTSELASELQHRQAEYEELMGQKDDLNSQlQESLRANSRLLEQLQ 371
Cdd:PRK02224 432 EATLRTARERVEEAEA-----LLEagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEE-VEEVEERLERAEDLV 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 372 EIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRqeee 451
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETIEEKR-ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK---- 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 452 lRGQIREEKARTRELENLQHTVEELQAQVHsmdgakgwferRLKEAEESLQQQQQEQEETLKLCREEH---AAELKGKD- 527
Cdd:PRK02224 581 -LAELKERIESLERIRTLLAAIADAEDEIE-----------RLREKREALAELNDERRERLAEKRERKrelEAEFDEARi 648
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435462 528 EELQNVREQLQQAQEERDGHVKTisnlKQEVKDTvdgqriLEKKGSAVLKDLKRQLHLeRKRADKLQERLQ 598
Cdd:PRK02224 649 EEAREDKERAEEYLEQVEEKLDE----LREERDD------LQAEIGAVENELEELEEL-RERREALENRVE 708
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
225-480 |
1.13e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 225 LELSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLARTQK---LQQ----ELEAANQSLAELRDQRQG 297
Cdd:PRK04863 358 EELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLADYQQaldVQQtraiQYQQAVQALERAKQLCGL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 298 ERLEHAAA---LRALQDQIQTAkTQELNMLrEQTSELASEL--QHRQAeYEELMGQKDDLN-SQLQESLRANSRLLEQLQ 371
Cdd:PRK04863 433 PDLTADNAedwLEEFQAKEQEA-TEELLSL-EQKLSVAQAAhsQFEQA-YQLVRKIAGEVSrSEAWDVARELLRRLREQR 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 372 EIGQEKEQLTQDLQEARKSAEKRKV---MLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHEDKKRQ 448
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQRLRQQQRaerLLAEFCKR-LGKNLDDEDELEQLQEELEARLESLSE-SVSEARERRMALRQQ 587
|
250 260 270
....*....|....*....|....*....|..
gi 1720435462 449 EEELRGQIREEKARTRELENLQHTVEELQAQV 480
Cdd:PRK04863 588 LEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
204-471 |
1.74e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 204 VELKWEMEREEKKLlwEQLQGLELSEKLKKKQESfcrlqTEKETLFNDSRnKIEELQQRKEADLKAQLARTQKLQQELEA 283
Cdd:COG5022 832 LRETEEVEFSLKAE--VLIQKFGRSLKAKKRFSL-----LKKETIYLQSA-QRVELAERQLQELKIDVKSISSLKLVNLE 903
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 284 ANQSLAELRDQRQGE-------RLEHAAALRALQDQIQTA--------KTQELNMLREQTSELASELQHRQAEYEELMGQ 348
Cdd:COG5022 904 LESEIIELKKSLSSDlienlefKTELIARLKKLLNNIDLEegpsieyvKLPELNKLHEVESKLKETSEEYEDLLKKSTIL 983
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 349 KDDLNSQLQESLRANSRLLEQLQEIGqekeqltqDLQEARKSAEKRKVMLDELAMETLQEKSQHKE-----ELGAVRLRH 423
Cdd:COG5022 984 VREGNKANSELKNFKKELAELSKQYG--------ALQESTKQLKELPVEVAELQSASKIISSESTElsilkPLQKLKGLL 1055
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1720435462 424 EKELLGVRARYE-----RELRELHEDKKRQEEELRGQIREEKARTRELENLQH 471
Cdd:COG5022 1056 LLENNQLQARYKalklrRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
201-574 |
1.87e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 201 LAEVELKWEMEREEKKLLWEQLQGL--------ELSEKLKKKQESFCRLQtEKETLFNDSRNKIEELQQRK--------- 263
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELeekeerleELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKkrltgltpe 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 264 --EADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQIQTAKTQ-----ELNMLREQTSELA---S 333
Cdd:PRK03918 388 klEKELEELEKAKEEIEEEISKITARIGELK-KEIKELKKAIEELKKAKGKCPVCGRElteehRKELLEEYTAELKrieK 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 334 ELQHRQAEYEELMGQKDDLNSQL--QESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAME--TLQE 408
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEikSLKK 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 409 KSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE--------------EKARTRELENLQHTVE 474
Cdd:PRK03918 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKElepfyneylelkdaEKELEREEKELKKLEE 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 475 ELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQeerdghvKTISNL 554
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK-------KTLEKL 699
|
410 420
....*....|....*....|
gi 1720435462 555 KQEVKDTVDGQRILEKKGSA 574
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKA 719
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
252-400 |
2.01e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 252 SRNKIEELQQRKEADLKAQLARTQKLQQEL------------EAANQSLAELRDQRQGERLEHAAA---LRALQDQ---- 312
Cdd:PRK11448 51 ALLGIYEPPCENQHDLLRRLGKEGFLPDEIldvfhklrkignKAVHEFHGDHREALMGLKLAFRLAvwfHRTYGKDwdfk 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 313 ------------IQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQL 380
Cdd:PRK11448 131 pgpfvppedpenLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
|
170 180
....*....|....*....|...
gi 1720435462 381 TQDLQEARKSAEKR---KVMLDE 400
Cdd:PRK11448 211 SQERKQKRKEITDQaakRLELSE 233
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
176-293 |
2.74e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 41.24 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 176 RPSAVGEGQGDPPGDVLPTPLAPMPLAEVelkwemereeKKLLWEQL---------QGLELSEKLKKKQESFCRLQTEKE 246
Cdd:PRK06975 294 QPAAAAAAPAPPPNPPATPPEPPARRGRG----------SAALWFVVvvlacaaavGGYALNRKVDRLDQELVQRQQAND 363
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1720435462 247 TLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRD 293
Cdd:PRK06975 364 AQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRD 416
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
213-599 |
3.70e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 213 EEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELR 292
Cdd:pfam01576 138 EDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGES 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 293 DQRQGERLEHAAALRALQDQIQtAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQE 372
Cdd:pfam01576 218 TDLQEQIAELQAQIAELRAQLA-KKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRD 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 373 IGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEdkkRQEEEL 452
Cdd:pfam01576 297 LGEELEALKTELEDTLDTTAAQQ----ELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTE---QLEQAK 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 453 RGQIREEKARtrelENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLcREEHAAELKGKDEELQN 532
Cdd:pfam01576 370 RNKANLEKAK----QALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQ-RAELAEKLSKLQSELES 444
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720435462 533 VREQLQQAQEERDGHVKTISNLKQEVKDTvdgQRILEKKGSAVLKDLKRQLHLERKRADkLQERLQE 599
Cdd:pfam01576 445 VSSLLNEAEGKNIKLSKDVSSLESQLQDT---QELLQEETRQKLNLSTRLRQLEDERNS-LQEQLEE 507
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
220-442 |
4.54e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 220 EQLQGLELSEKLKKKQesfcrLQTEKEtLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELrDQRQGER 299
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQ-----IKTYNK-NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL-VMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 300 LEHAAALR----ALQDQIQTAK---------------TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 360
Cdd:PHA02562 254 SAALNKLNtaaaKIKSKIEQFQkvikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 361 RANSRLLEQLQEIGQEKeqltQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAVRlRHEKELLGVRARYERELRE 440
Cdd:PHA02562 334 EQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQ-DELDKIVKTKSELVKEKYH 404
|
..
gi 1720435462 441 LH 442
Cdd:PHA02562 405 RG 406
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
213-401 |
4.65e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 213 EEKKLLWEQLQGLELSEK-LKKKQESFcrLQTEKETlFNDSRNKIEELQQRKEADLKAQLARtqkLQQELEAANQSLAEL 291
Cdd:pfam12128 675 ERKDSANERLNSLEAQLKqLDKKHQAW--LEEQKEQ-KREARTEKQAYWQVVEGALDAQLAL---LKAAIAARRSGAKAE 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 292 RDQRQGERLEHAAALRALQDQIQTAKTQELNMlrEQTSELASELQHRQAEYEELMG-----QKDDLNSQLQESLRANSRL 366
Cdd:pfam12128 749 LKALETWYKRDLASLGVDPDVIAKLKREIRTL--ERKIERIAVRRQEVLRYFDWYQetwlqRRPRLATQLSNIERAISEL 826
|
170 180 190
....*....|....*....|....*....|....*
gi 1720435462 367 LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL 401
Cdd:pfam12128 827 QQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
227-372 |
4.94e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 227 LSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKeADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHA 303
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELadlLSLERQGNQDLQDSV-ANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720435462 304 AALRALQDQIQTAKTQ------ELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLqeslraNSRLLEQLQE 372
Cdd:PRK09039 123 QELDSEKQVSARALAQvellnqQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL------NVALAQRVQE 191
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
210-392 |
5.34e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 210 MEREEKKLLWEQLQGLEL--SEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEAdLKAQLA--RTQKLQQELEAAN 285
Cdd:pfam17380 407 LEEERQRKIQQQKVEMEQirAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVER-LRQQEEerKRKKLELEKEKRD 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 286 QSLAELRDQRQGERlEHAAALRALQDQIQTAKTQELNMLREQTSeLASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 365
Cdd:pfam17380 486 RKRAEEQRRKILEK-ELEERKQAMIEEERKRKLLEKEMEERQKA-IYEEERRREAEEERRKQQEMEERRRIQEQMRKATE 563
|
170 180
....*....|....*....|....*..
gi 1720435462 366 LLEQLQEIGQEKEQLTQDLQEARKSAE 392
Cdd:pfam17380 564 ERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
254-716 |
5.46e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 254 NKIEELQQRKEADLKAQL----ARTQKLQQELEA-------ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ--E 320
Cdd:pfam15921 95 NESNELHEKQKFYLRQSVidlqTKLQEMQMERDAmadirrrESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQieQ 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 321 LNMLREQTSELASELQHRQAEYEELMGQK----DDLNSQLQESL-RANSRLLEQLQ-EIGQEKEQL--TQDLQEARKSAE 392
Cdd:pfam15921 175 LRKMMLSHEGVLQEIRSILVDFEEASGKKiyehDSMSTMHFRSLgSAISKILRELDtEISYLKGRIfpVEDQLEALKSES 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 393 KRKVmldELAMEtlqeksQHKEELGAVRLRHEKELLGVRARyERELRELHEDKKRQEEELRGQIREEKAR-TRELENLQH 471
Cdd:pfam15921 255 QNKI---ELLLQ------QHQDRIEQLISEHEVEITGLTEK-ASSARSQANSIQSQLEIIQEQARNQNSMyMRQLSDLES 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 472 TVEELQAQVHSmdgAKGWFERRLKEAEESLQQQQQEQEETlKLCREEHAAELKGKDEELQNVREQLQQAQEE-------- 543
Cdd:pfam15921 325 TVSQLRSELRE---AKRMYEDKIEELEKQLVLANSELTEA-RTERDQFSQESGNLDDQLQKLLADLHKREKElslekeqn 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 544 -----RD-GHVKTISNLKQEVKD-TVDGQRIlekkgSAVLKDLKR--QLHLERKRA-----DKLQERLQEILTNSKSRTG 609
Cdd:pfam15921 401 krlwdRDtGNSITIDHLRRELDDrNMEVQRL-----EALLKAMKSecQGQMERQMAaiqgkNESLEKVSSLTAQLESTKE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 610 LEELVLSEMNSPSRTQtgdsssvssfsyreilkekESSAIPARSLSSSPQaQPPRPAELSDEEVAELFQRLAETQQEKWM 689
Cdd:pfam15921 476 MLRKVVEELTAKKMTL-------------------ESSERTVSDLTASLQ-EKERAIEATNAEITKLRSRVDLKLQELQH 535
|
490 500 510
....*....|....*....|....*....|
gi 1720435462 690 L---EEKVKHLEVSSASMAEDLCRKSAIIE 716
Cdd:pfam15921 536 LkneGDHLRNVQTECEALKLQMAEKDKVIE 565
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
240-600 |
6.46e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 240 RLQTEKETLFNDSRNKIEElqqRKEADLKAQLArtqklqqeleAANQSLAELRDQrqgerLEHaaalraLQDQIQTAKTQ 319
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEE---KEEKDLHERLN----------GLESELAELDEE-----IER------YEEQREQARET 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 320 elnmlREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEkrkvmLD 399
Cdd:PRK02224 236 -----RDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG-----LD 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 400 ELAMETLQ--------EKSQHKEELGAVRL---RHEKELLGVR---ARYERELRELHEDKKRQEEELRGQIREEKARTRE 465
Cdd:PRK02224 306 DADAEAVEarreeledRDEELRDRLEECRVaaqAHNEEAESLRedaDDLEERAEELREEAAELESELEEAREAVEDRREE 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 466 LENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESlqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQE--- 542
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREE---------------RDELREREAELEATLRTARERVEEAEAlle 450
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435462 543 -----------ERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKR--QLHLERKRADKLQERLQEI 600
Cdd:PRK02224 451 agkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERaeDLVEAEDRIERLEERREDL 521
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
52-450 |
7.60e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 52 PELSSLRQKV-AYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRlQNSTLMAEFSKLCSQLEQLELEN 130
Cdd:TIGR00618 459 IHLQESAQSLkEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPN-PARQDIDNPGPLTRRMQRGEQTY 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 131 RQLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEG-QGDPPGDVLPTPLAPMPLAEVELKWE 209
Cdd:TIGR00618 538 AQLET-----SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDiPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 210 MEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKE-TLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSL 288
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHaLQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 289 AELRdqrqgERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMG-----QKDDLNSQLQESLRAN 363
Cdd:TIGR00618 693 TYWK-----EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKelmhqARTVLKARTEAHFNNN 767
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 364 SRLLEQLQeIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHE 443
Cdd:TIGR00618 768 EEVTAALQ-TGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGE 846
|
....*..
gi 1720435462 444 DKKRQEE 450
Cdd:TIGR00618 847 ITHQLLK 853
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
250-479 |
9.58e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.51 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 250 NDSRNKIEELQQRKE-------------------ADLKAQLARTQKLQQELEAANQSLAElrDQRQGERLEHAAAlralQ 310
Cdd:PRK11281 39 ADVQAQLDALNKQKLleaedklvqqdleqtlallDKIDRQKEETEQLKQQLAQAPAKLRQ--AQAELEALKDDND----E 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 311 DQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQL---QESLRANSrllEQLQEIGQEKEQLTQDlqEA 387
Cdd:PRK11281 113 ETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPeraQAALYANS---QRLQQIRNLLKGGKVG--GK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435462 388 RKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLrheKELLGVRaryeRELRELHEDkkRQEEELrgQIREEKARTRELE 467
Cdd:PRK11281 188 ALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL---QDLLQKQ----RDYLTARIQ--RLEHQL--QLLQEAINSKRLT 256
|
250
....*....|..
gi 1720435462 468 NLQHTVEELQAQ 479
Cdd:PRK11281 257 LSEKTVQEAQSQ 268
|
|
| |
