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Conserved domains on  [gi|1720435010|ref|XP_030107181|]
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ubiquitin carboxyl-terminal hydrolase 11 isoform X1 [Mus musculus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 1000871)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0046872|GO:0003723

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
39-654 1.41e-113

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 360.74  E-value: 1.41e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010  39 QCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQEL 118
Cdd:COG5560   282 QCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEF 361
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 119 LSFLLDGLHEDLNRVKKKEYVElcngagRPDL---------EVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVS 189
Cdd:COG5560   362 IAFLLDGLHEDLNRIIKKPYTS------KPDLspgddvvvkKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVS 435
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 190 VTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQhrVVVPKKGNISDLCVALSTHTSVAP-DKMIVADVFSHRFYK-L 267
Cdd:COG5560   436 ITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLK--IELDASSTIRGLKKLVDAEYGKLGcFEIKVMCIYYGGNYNmL 513
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 268 YQLEDPLS-GILDRDDIFVYEVTGriepvegsrDDIVVPVYlreRTPSrdyNNSYYGLILFGHPLLVSVPRDRFSwegLY 346
Cdd:COG5560   514 EPADKVLLqDIPQTDFVYLYETND---------NGIEVPVV---HLRI---EKGYKSKRLFGDPFLQLNVLIKAS---IY 575
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 347 NILMyrlsryvtkptsdeddgdekvdedededveddssseeekeemsaptvndgtREAEQEQAGTSSGVTERCPSLLDNS 426
Cdd:COG5560   576 DKLV---------------------------------------------------KEFEELLVLVEMKKTDVDLVSEQVR 604
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 427 LRasqwppRRRRKQLFTLQTVNsngtsDRTTSPEEMQTQPYIAMDWEPDMKRRYYDEVEAEGYVKHDCVGYM----LKKS 502
Cdd:COG5560   605 LL------REESSPSSWLKLET-----EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIreigAAER 673
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 503 PVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEF 582
Cdd:COG5560   674 TITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGV 753
                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435010 583 VIKPKNessPDLYkYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 654
Cdd:COG5560   754 EYMVDD---PRLI-YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
39-654 1.41e-113

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 360.74  E-value: 1.41e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010  39 QCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQEL 118
Cdd:COG5560   282 QCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEF 361
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 119 LSFLLDGLHEDLNRVKKKEYVElcngagRPDL---------EVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVS 189
Cdd:COG5560   362 IAFLLDGLHEDLNRIIKKPYTS------KPDLspgddvvvkKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVS 435
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 190 VTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQhrVVVPKKGNISDLCVALSTHTSVAP-DKMIVADVFSHRFYK-L 267
Cdd:COG5560   436 ITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLK--IELDASSTIRGLKKLVDAEYGKLGcFEIKVMCIYYGGNYNmL 513
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 268 YQLEDPLS-GILDRDDIFVYEVTGriepvegsrDDIVVPVYlreRTPSrdyNNSYYGLILFGHPLLVSVPRDRFSwegLY 346
Cdd:COG5560   514 EPADKVLLqDIPQTDFVYLYETND---------NGIEVPVV---HLRI---EKGYKSKRLFGDPFLQLNVLIKAS---IY 575
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 347 NILMyrlsryvtkptsdeddgdekvdedededveddssseeekeemsaptvndgtREAEQEQAGTSSGVTERCPSLLDNS 426
Cdd:COG5560   576 DKLV---------------------------------------------------KEFEELLVLVEMKKTDVDLVSEQVR 604
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 427 LRasqwppRRRRKQLFTLQTVNsngtsDRTTSPEEMQTQPYIAMDWEPDMKRRYYDEVEAEGYVKHDCVGYM----LKKS 502
Cdd:COG5560   605 LL------REESSPSSWLKLET-----EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIreigAAER 673
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 503 PVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEF 582
Cdd:COG5560   674 TITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGV 753
                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435010 583 VIKPKNessPDLYkYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 654
Cdd:COG5560   754 EYMVDD---PRLI-YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
503-653 1.29e-57

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 194.81  E-value: 1.29e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 503 PVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEF 582
Cdd:cd02674    83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435010 583 VIkpkNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQ 653
Cdd:cd02674   163 VD---TRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
493-652 1.66e-55

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 191.89  E-value: 1.66e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 493 DCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQF 572
Cdd:pfam00443 151 PIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 573 PiRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPV-NENQIESKAAYVLF 651
Cdd:pfam00443 231 P-LELDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVdEETAVLSSSAYILF 309

                  .
gi 1720435010 652 Y 652
Cdd:pfam00443 310 Y 310
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
39-654 1.41e-113

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 360.74  E-value: 1.41e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010  39 QCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQEL 118
Cdd:COG5560   282 QCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEF 361
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 119 LSFLLDGLHEDLNRVKKKEYVElcngagRPDL---------EVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVS 189
Cdd:COG5560   362 IAFLLDGLHEDLNRIIKKPYTS------KPDLspgddvvvkKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVS 435
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 190 VTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQhrVVVPKKGNISDLCVALSTHTSVAP-DKMIVADVFSHRFYK-L 267
Cdd:COG5560   436 ITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLK--IELDASSTIRGLKKLVDAEYGKLGcFEIKVMCIYYGGNYNmL 513
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 268 YQLEDPLS-GILDRDDIFVYEVTGriepvegsrDDIVVPVYlreRTPSrdyNNSYYGLILFGHPLLVSVPRDRFSwegLY 346
Cdd:COG5560   514 EPADKVLLqDIPQTDFVYLYETND---------NGIEVPVV---HLRI---EKGYKSKRLFGDPFLQLNVLIKAS---IY 575
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 347 NILMyrlsryvtkptsdeddgdekvdedededveddssseeekeemsaptvndgtREAEQEQAGTSSGVTERCPSLLDNS 426
Cdd:COG5560   576 DKLV---------------------------------------------------KEFEELLVLVEMKKTDVDLVSEQVR 604
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 427 LRasqwppRRRRKQLFTLQTVNsngtsDRTTSPEEMQTQPYIAMDWEPDMKRRYYDEVEAEGYVKHDCVGYM----LKKS 502
Cdd:COG5560   605 LL------REESSPSSWLKLET-----EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIreigAAER 673
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 503 PVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEF 582
Cdd:COG5560   674 TITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGV 753
                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435010 583 VIKPKNessPDLYkYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 654
Cdd:COG5560   754 EYMVDD---PRLI-YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
503-653 1.29e-57

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 194.81  E-value: 1.29e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 503 PVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEF 582
Cdd:cd02674    83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435010 583 VIkpkNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQ 653
Cdd:cd02674   163 VD---TRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
493-652 1.66e-55

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 191.89  E-value: 1.66e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 493 DCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQF 572
Cdd:pfam00443 151 PIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 573 PiRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPV-NENQIESKAAYVLF 651
Cdd:pfam00443 231 P-LELDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVdEETAVLSSSAYILF 309

                  .
gi 1720435010 652 Y 652
Cdd:pfam00443 310 Y 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
506-653 5.75e-40

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 147.24  E-value: 5.75e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 506 LKECIKLFTTVETLEKENPWYCSsCKQHQLATKKLDLWMLPEVLIIHLKRFSFS-KISREKLDTLVQFPIRdLDFSEFVI 584
Cdd:cd02257   101 LEDCLEKFFKEEILEGDNCYKCE-KKKKQEATKRLKIKKLPPVLIIHLKRFSFNeDGTKEKLNTKVSFPLE-LDLSPYLS 178
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720435010 585 KPKNESSPDL--YKYDLIAVSNHYGGMRD-GHYTTFACNKDSGQWHYFDDNSVSPVNENQIE-----SKAAYVLFYQ 653
Cdd:cd02257   179 EGEKDSDSDNgsYKYELVAVVVHSGTSADsGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
39-203 1.01e-34

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 134.11  E-value: 1.01e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010  39 QCLSNVPQLTEYFLNnryLEELNFRNPLGMKGELAEAYADLVKQTWSG-YHRSIVPNVFKNKVGHFASQFLGYQQHDSQE 117
Cdd:pfam00443  17 QSLFSIPPFRDYLLR---ISPLSEDSRYNKDINLLCALRDLFKALQKNsKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQE 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 118 LLSFLLDGLHEDLNRvkkkeyvelcngagrpdlevaqeawqNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCY 197
Cdd:pfam00443  94 FLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSD 147

                  ....*.
gi 1720435010 198 LSVPLP 203
Cdd:pfam00443 148 LSLPIP 153
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
506-652 5.51e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 123.15  E-value: 5.51e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 506 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFskISREKLDTLVQFPIRdLDFSEFVIK 585
Cdd:cd02661   164 LEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSN--FRGGKINKQISFPET-LDLSPYMSQ 240
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720435010 586 PKNESspdlYKYDLIAVSNHYGG-MRDGHYTTFACNkDSGQWHYFDDNSVSPVNENQIESKAAYVLFY 652
Cdd:cd02661   241 PNDGP----LKYKLYAVLVHSGFsPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
506-652 1.65e-29

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 119.78  E-value: 1.65e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 506 LKECIKLFTTVETLEkENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKI-SREKLDTLVQFPIRdLDFSEFV- 583
Cdd:cd02660   178 LSDCLDRFTRPEKLG-DFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNkTSRKIDTYVQFPLE-LNMTPYTs 255
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720435010 584 -----IKPKNESSPDlYKYDLIAVSNHYGGMRDGHYTTFaCNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFY 652
Cdd:cd02660   256 ssigdTQDSNSLDPD-YTYDLFAVVVHKGTLDTGHYTAY-CRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
506-656 1.82e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 110.81  E-value: 1.82e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 506 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFS--KISREKLDTLVQFPIRdLDFSEFV 583
Cdd:cd02659   153 LEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDfeTMMRIKINDRFEFPLE-LDMEPYT 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 584 ---IKPKNESSPDL----YKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESK----------- 645
Cdd:cd02659   232 ekgLAKKEGDSEKKdsesYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEEcfggeetqkty 311
                         170       180
                  ....*....|....*....|..
gi 1720435010 646 -----------AAYVLFYQRQD 656
Cdd:cd02659   312 dsgprafkrttNAYMLFYERKS 333
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
501-653 1.10e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 107.09  E-value: 1.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 501 KSPVQLKECIKLFTTVETLEKENPWYCSSCKQhqlATKKLDLWMLPEVLIIHLKRF------SFSKISREkldtlVQFPI 574
Cdd:cd02667   108 KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFqqprsaNLRKVSRH-----VSFPE 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 575 RdLDFSEFViKPKNESSPDLYK--YDLIAVSNHYGGMRDGHYTTFA---------------------CNKDSGQWHYFDD 631
Cdd:cd02667   180 I-LDLAPFC-DPKCNSSEDKSSvlYRLYGVVEHSGTMRSGHYVAYVkvrppqqrlsdltkskpaadeAGPGSGQWYYISD 257
                         170       180
                  ....*....|....*....|..
gi 1720435010 632 NSVSPVNENQIESKAAYVLFYQ 653
Cdd:cd02667   258 SDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
505-652 1.06e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 96.72  E-value: 1.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 505 QLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKIS--REKLDTLVQFPiRDLDFSEF 582
Cdd:cd02668   157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTgaKKKLNASISFP-EILDMGEY 235
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 583 VIkpknESSPDLYKYDLIAVSNHYG-GMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIE------------------ 643
Cdd:cd02668   236 LA----ESDEGSYVYELSGVLIHQGvSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKlgnsedpakprkseikkg 311
                         170
                  ....*....|..
gi 1720435010 644 ---SKAAYVLFY 652
Cdd:cd02668   312 thsSRTAYMLVY 323
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
506-653 1.99e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 95.45  E-value: 1.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 506 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFS-KISR-EKLDTLVQFPirdldfSEFV 583
Cdd:cd02663   149 ITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDeQLNRyIKLFYRVVFP------LELR 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 584 IKPKNESSPDLYK-YDLIAVSNHYGG--MRdGHYTTFAcnKDSGQWHYFDDNSVSPVNENQIE--------SKAAYVLFY 652
Cdd:cd02663   223 LFNTTDDAENPDRlYELVAVVVHIGGgpNH-GHYVSIV--KSHGGWLLFDDETVEKIDENAVEeffgdspnQATAYVLFY 299

                  .
gi 1720435010 653 Q 653
Cdd:cd02663   300 Q 300
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
106-203 2.65e-17

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 81.57  E-value: 2.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 106 QFLGYQQHDSQELLSFLLDGLHedlnrvkkkeyvelcngagrpdlevaqeawqnhkrrndSVIVDTFHGLFKSTLVCPDC 185
Cdd:cd02674    16 QCLSADQQDAQEFLLFLLDGLH--------------------------------------SIIVDLFQGQLKSRLTCLTC 57
                          90
                  ....*....|....*...
gi 1720435010 186 GNVSVTFDPFCYLSVPLP 203
Cdd:cd02674    58 GKTSTTFEPFTYLSLPIP 75
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
106-204 3.75e-16

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 78.68  E-value: 3.75e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 106 QFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEyvelcngagrpdlevaqeawqNHKRRNDSVIVDTFHGLFKSTLVCPDC 185
Cdd:cd02257    16 QALFSEQQDAHEFLLFLLDKLHEELKKSSKRT---------------------SDSSSLKSLIHDLFGGKLESTIVCLEC 74
                          90
                  ....*....|....*....
gi 1720435010 186 GNVSVTFDPFCYLSVPLPV 204
Cdd:cd02257    75 GHESVSTEPELFLSLPLPV 93
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
499-653 5.09e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 76.59  E-value: 5.09e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 499 LKKSPVQLKECIKLFTTVETLEkenpWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISRE-KLDTLVQFPirdl 577
Cdd:cd02658   173 LVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPkKLDVPIDVP---- 244
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 578 dfseFVIKPKnesspdlyKYDLIAVSNHYG-GMRDGHYTTFacNK----DSGQWHYFDDNSVSPVNENQIESKAAYVLFY 652
Cdd:cd02658   245 ----EELGPG--------KYELIAFISHKGtSVHSGHYVAH--IKkeidGEGKWVLFNDEKVVASQDPPEMKKLGYIYFY 310

                  .
gi 1720435010 653 Q 653
Cdd:cd02658   311 Q 311
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
520-654 7.08e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 75.61  E-value: 7.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 520 EKENPWYCSSCKQHQLATKKldlwMLPEVLIIHLKRFSfSKISREKLDTLVQFPIrDLDFSefvIKPKNESSPDLYkYDL 599
Cdd:COG5533   158 AKENEELEVQAKQEYEVSFV----KLPKILTIQLKRFA-NLGGNQKIDTEVDEKF-ELPVK---HDQILNIVKETY-YDL 227
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1720435010 600 IAVSNHYGGMRDGHYTtfACNKDSGQWHYFDDNSVSPVNENQIE---SKAAYVLFYQR 654
Cdd:COG5533   228 VGFVLHQGSLEGGHYI--AYVKKGGKWEKANDSDVTPVSEEEAInekAKNAYLYFYER 283
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
510-653 1.23e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 75.61  E-value: 1.23e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 510 IKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKIS--REKL------DTLVQFPIRD-LDFS 580
Cdd:cd02664   140 LNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKThvREKImdnvsiNEVLSLPVRVeSKSS 219
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 581 EFVIKPKNESSPD-------LYKYDLIAVSNHYG-GMRDGHYTTFA--------------------CNKDSGQWHYFDDN 632
Cdd:cd02664   220 ESPLEKKEEESGDdgelvtrQVHYRLYAVVVHSGySSESGHYFTYArdqtdadstgqecpepkdaeENDESKNWYLFNDS 299
                         170       180
                  ....*....|....*....|....*...
gi 1720435010 633 SVSPVNENQIE-------SKAAYVLFYQ 653
Cdd:cd02664   300 RVTFSSFESVQnvtsrfpKDTPYILFYE 327
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
545-653 2.08e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 75.82  E-value: 2.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 545 LPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLyKYDLIAVSNHYGG-MRDGHYTTFACNKDS 623
Cdd:cd02669   332 LPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLST-KYNLVANIVHEGTpQEDGTWRVQLRHKST 410
                          90       100       110
                  ....*....|....*....|....*....|
gi 1720435010 624 GQWHYFDDNSVSPVNENQIESKAAYVLFYQ 653
Cdd:cd02669   411 NKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
506-652 5.31e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 70.69  E-value: 5.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 506 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISR------EKLDTLVQFPIrDLDF 579
Cdd:cd02671   182 LKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFdcygglSKVNTPLLTPL-KLSL 260
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 580 SEFVIKPKNESspdlykYDLIAVSNHYGG-MRDGHYTTFACnkdsgqWHYFDDNSVSPVNENQIE---------SKAAYV 649
Cdd:cd02671   261 EEWSTKPKNDV------YRLFAVVMHSGAtISSGHYTAYVR------WLLFDDSEVKVTEEKDFLealspntssTSTPYL 328

                  ...
gi 1720435010 650 LFY 652
Cdd:cd02671   329 LFY 331
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
545-652 8.19e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 69.67  E-value: 8.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 545 LPEVLIIHLKRFSFSKISREKLDTL--VQFPIrDLDFSEFVikpknesSPDLYkYDLIAVSNHYGGMRD-GHYTTFACNK 621
Cdd:cd02657   196 LPKYLTVQFVRFFWKRDIQKKAKILrkVKFPF-ELDLYELC-------TPSGY-YELVAVITHQGRSADsGHYVAWVRRK 266
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1720435010 622 DSGQWHYFDDNSVSPVNENQIESKA-------AYVLFY 652
Cdd:cd02657   267 NDGKWIKFDDDKVSEVTEEDILKLSgggdwhiAYILLY 304
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
39-208 1.56e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 69.32  E-value: 1.56e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010  39 QCLSNVPQLTEYFLNNRYLEELNFRNPLGMKG-ELAEAYADLvkqTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQE 117
Cdd:cd02660    17 QALLHNPLLRNYFLSDRHSCTCLSCSPNSCLScAMDEIFQEF---YYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHE 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 118 LLSFLLDGLHEDLNRVKKKEY-VELCNgagrpdlevaqeawqnhkrrndsVIVD-TFHGLFKSTLVCPDCGNVSVTFDPF 195
Cdd:cd02660    94 FFQFLLDQLHTHYGGDKNEANdESHCN-----------------------CIIHqTFSGSLQSSVTCQRCGGVSTTVDPF 150
                         170
                  ....*....|...
gi 1720435010 196 CYLSVPLPVCSRR 208
Cdd:cd02660   151 LDLSLDIPNKSTP 163
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
506-653 1.49e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 62.00  E-value: 1.49e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 506 LKECIKLFTTVETLEKENpwyCSSCkqhQLATKKLdlwmlPEVLIIHLKRFSFS-KISREKLDTLVQFPirdldfsEFVI 584
Cdd:cd02662    98 LEHCLDDFLSTEIIDDYK---CDRC---QTVIVRL-----PQILCIHLSRSVFDgRGTSTKNSCKVSFP-------ERLP 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 585 KpknesspdlYKYDLIAVSNHYGGMRDGHYTTF--------------------ACNKDSGQWHYFDDNSVSPVNENQI-E 643
Cdd:cd02662   160 K---------VLYRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfvrmreGPSSTSHPWWRISDTTVKEVSESEVlE 230
                         170
                  ....*....|
gi 1720435010 644 SKAAYVLFYQ 653
Cdd:cd02662   231 QKSAYMLFYE 240
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
93-206 1.74e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 59.32  E-value: 1.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010  93 PNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLhedlnrvkkkeyvelcngagrpdlevaqeawqnhkrrnDSVIVDTF 172
Cdd:cd02667    32 PKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGL--------------------------------------RTFIDSIF 73
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1720435010 173 HGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVCS 206
Cdd:cd02667    74 GGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEI 107
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
506-642 1.84e-09

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 61.04  E-value: 1.84e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010  506 LKECIKLFTTVETLEKENPWYCsscKQHQL--ATKKLDLWMLPEVLIIHLKRFS--FSKISREKLDTLVQFPIrDLDFSE 581
Cdd:COG5077    340 LQESFRRYIQVETLDGDNRYNA---EKHGLqdAKKGVIFESLPPVLHLQLKRFEydFERDMMVKINDRYEFPL-EIDLLP 415
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435010  582 FVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQI 642
Cdd:COG5077    416 FLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEV 476
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
508-653 1.03e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 56.75  E-value: 1.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 508 ECIKLFTTvetLEKENPWYCSSCKQHQLATKKLDLWMLP----EVLIIHLKRF-------SFSKISREKLDTLVQFPIRD 576
Cdd:cd02672   121 QLLKRSLD---LEKVTKAWCDTCCKYQPLEQTTSIRHLPdillLVLVINLSVTngefddiNVVLPSGKVMQNKVSPKAID 197
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 577 LDFSEfvikpKNESSPDLYKYDLIA-VSNHYGGMRDGHYTTF----ACNKDSGQWHYFDDNSVSPVnenqieSKAAYVLF 651
Cdd:cd02672   198 HDKLV-----KNRGQESIYKYELVGyVCEINDSSRGQHNVVFvikvNEESTHGRWYLFNDFLVTPV------SELAYILL 266

                  ..
gi 1720435010 652 YQ 653
Cdd:cd02672   267 YQ 268
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
513-652 2.52e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 55.23  E-value: 2.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 513 FTTVETLEKEnpwyCSSCKqHQLATKKLDLWMLPEVLIIHLKRFSFSKISREkldtlvqfpirDLDFSEFVIKpKNESSP 592
Cdd:cd02673   119 FKTWSPIEKD----CSSCK-CESAISSERIMTFPECLSINLKRYKLRIATSD-----------YLKKNEEIMK-KYCGTD 181
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720435010 593 DlyKYDLIAVSNHYG-GMRDGHYTTFACNKDSG-QWHYFDDNSVSPVNENQIE---SKAAYVLFY 652
Cdd:cd02673   182 A--KYSLVAVICHLGeSPYDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDVStnaRSSGYLIFY 244
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
545-652 6.61e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 51.02  E-value: 6.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 545 LPEVLIIHLKRFSFSKISREKLDTLVQFP--IRDLdfsefvikpknesspdlyKYDLIAVSNHYGGMRDGHYTTFACNKD 622
Cdd:cd02665   128 LPPVLTFELSRFEFNQGRPEKIHDKLEFPqiIQQV------------------PYELHAVLVHEGQANAGHYWAYIYKQS 189
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1720435010 623 SGQWHYFDDNSVSPVNENQIESKA--------AYVLFY 652
Cdd:cd02665   190 RQEWEKYNDISVTESSWEEVERDSfgggrnpsAYCLMY 227
USP7_C2 pfam14533
Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific ...
194-315 3.11e-04

Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific proteases has no known function.


Pssm-ID: 464201  Cd Length: 204  Bit Score: 42.47  E-value: 3.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 194 PFCY--LSVPLPVC-SRRVLEVFFVPmDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAP---DKMIVADVFSHRFYKL 267
Cdd:pfam14533   1 ALYYevLDISLSELeNKKSIKVTWLS-PGLKKEEELELLVPKNGTVADLLEELQKKVKLSEegsGKIRLYEVSNHKIYKE 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1720435010 268 YQLEDPLSGILDRDDIFVYEVTgrIEPVEGSRDDIVVPVYLRERTPSR 315
Cdd:pfam14533  80 LSEDEPIDSLNDYLTLYAEEIP--EEELNLDEGERLIPVFHFQKEPSR 125
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
107-203 6.04e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 39.22  E-value: 6.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 107 FLGYQQHDSQELLSFLLDGLHEDLNRVKKKEyvelcngagrpdLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCG 186
Cdd:cd02663    60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAE------------KANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCE 127
                          90
                  ....*....|....*..
gi 1720435010 187 NVSVTFDPFCYLSVPLP 203
Cdd:cd02663   128 TVSSRDETFLDLSIDVE 144
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
508-634 6.58e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 39.18  E-value: 6.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720435010 508 ECIKLFTTVETLEKenPWyCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKldTLVQFPirdLDFsEFVIKPK 587
Cdd:pfam13423 180 SILKSSLERETTTK--AW-CEKCKRYQPLESRRTVRNLPPVLSLNAALTNEEWRQLWK--TPGWLP---PEI-GLTLSDD 250
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1720435010 588 NESSPDLYKYDLIAVSNHYGGMRD-GHYTTFACNKDS-------GQWHYFDDNSV 634
Cdd:pfam13423 251 LQGDNEIVKYELRGVVVHIGDSGTsGHLVSFVKVADSeledpteSQWYLFNDFLV 305
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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