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histone deacetylase complex subunit SAP130 isoform X4 [Mus musculus]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
654-1024
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 571.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 654 A Q GSSPRPSILRKKPAT D GAKPK SEV HV SI A T PVTV SL E TISN QN A EQ P T VAVP P TA Q Q P PPT IP SMI A A A S PPSQP AIA 733
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E GAKPK PDI HV AV A P PVTV AV E ALPG QN S EQ Q T ASAS P PS Q H P AQA IP TIL A P A A PPSQP SVV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 734 LST I P G A VP VTPP ---- ITTIA A T PT LS A p VGG T PSTVLGPPV PEIK V K E EAEP V D ITR pvs T VPPL ATNTV SP S L AL LA 809
Cdd:pfam16014 81 LST L P A A MA VTPP ipas MANVV A P PT QP A - ASS T AACAVSSVL PEIK I K Q EAEP M D TSQ --- S VPPL TPTSI SP A L TS LA 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 810 S NLS M P PS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKSA A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPP 889
Cdd:pfam16014 157 N NLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKSA P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPP 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 890 ITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CRAQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I 969
Cdd:pfam16014 237 ITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CRAQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L 316
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1720393121 970 IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDHKDRVLKLLN 1024
Cdd:pfam16014 317 IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDHKDRVLKLLN 371
PHA03247 super family
cl33720 large tegument protein UL36; Provisional
8-359
1.44e-05
large tegument protein UL36; Provisional
PHA03247 :Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 49.55
E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 8 R L R I P QASGLNVEMSSQQF P RLGTPSPGLSQ PPS QIASSGSAGLINQVATVND E AG RD ADVGT R EHVGPSSSLPP R EEKQ 87
Cdd:PHA03247 2597 R P R A P VDDRGDPRGPAPPS P LPPDTHAPDPP PPS PSPAANEPDPHPPPTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQA 2676
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 88 EPVVV RP YPQVQMLPAHHAVAS A T P VAVTAP P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STMS l P P KV PG QVT 167
Cdd:PHA03247 2677 SSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPA 2755
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 168 VTMESSIPQASAI P VATISGQQ G H P SN L HHIMTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TS 247
Cdd:PHA03247 2756 RPARPPTTAGPPA P APPAAPAA G P P RR L TRPAVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AG 2826
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 248 Q LP NAAT AQP AVQHLIHQ P IQ sr P PVTTSSTIP P AVVATVSATRAQSPVITTTA A HAADST L S RP TL S IQHPPS A -- AIS 325
Cdd:PHA03247 2827 P LP PPTS AQP TAPPPPPG P PP -- P SLPLGGSVA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQ 2904
330 340 350
....*....|....*....|....*....|....
gi 1720393121 326 IQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHTMAQ 359
Cdd:PHA03247 2905 PE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPPPPR 2938
PHA02732 super family
cl28620 hypothetical protein; Provisional
257-486
4.93e-03
hypothetical protein; Provisional
PHA02732 :Pssm-ID: 165099 [Multi-domain]
Cd Length: 1467
Bit Score: 40.89
E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 257 PA V Q H L IHQPIQSRPPVTTSST -- IPP AVVA ---- TVSATR A QSPVITTTAAHA A DS T LSR P TL S IQHPPSAA IS IQ r P A 330
Cdd:PHA02732 1182 PA P Q L L SSYIPTGSVLYQDPIF ty IPP GIIG msgt NTFTFK A AQLQLSAASSPP A AT T PTP P PS S SSSSSAQS IS TS - P G 1260
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 331 Q SR ----- DV T TR I TLPSH PAL G TPK qqlhtmaqktifs T G TPV A AAT V apilatntlp STTT A GSVSHTQAPT S TIVTM 405
Cdd:PHA02732 1261 Q IQ ivlng ST T IH I NFLFF PAL S TPK ------------- I G QIL A MPI V ---------- NSSG A FISLYVNSAI S ANFNV 1317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 406 T MPSHS S HA T AVTTSNIPVAKVV P QQITHTSPRIQPDYPP E r S SLIP IS GHRASPNPV A MET RN DNRP S V P VQ F QY F L P T 485
Cdd:PHA02732 1318 T IEYVF S NG T VIKRFTDEPGQIF P LPLINGDEEVIISVEN E - S TTFN IS ANNLGSAQL A LQL RN AISA S L P GP F AF F G P I 1396
.
gi 1720393121 486 Y 486
Cdd:PHA02732 1397 L 1397
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
654-1024
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 571.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 654 A Q GSSPRPSILRKKPAT D GAKPK SEV HV SI A T PVTV SL E TISN QN A EQ P T VAVP P TA Q Q P PPT IP SMI A A A S PPSQP AIA 733
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E GAKPK PDI HV AV A P PVTV AV E ALPG QN S EQ Q T ASAS P PS Q H P AQA IP TIL A P A A PPSQP SVV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 734 LST I P G A VP VTPP ---- ITTIA A T PT LS A p VGG T PSTVLGPPV PEIK V K E EAEP V D ITR pvs T VPPL ATNTV SP S L AL LA 809
Cdd:pfam16014 81 LST L P A A MA VTPP ipas MANVV A P PT QP A - ASS T AACAVSSVL PEIK I K Q EAEP M D TSQ --- S VPPL TPTSI SP A L TS LA 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 810 S NLS M P PS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKSA A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPP 889
Cdd:pfam16014 157 N NLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKSA P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPP 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 890 ITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CRAQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I 969
Cdd:pfam16014 237 ITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CRAQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L 316
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1720393121 970 IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDHKDRVLKLLN 1024
Cdd:pfam16014 317 IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDHKDRVLKLLN 371
PHA03247
PHA03247 large tegument protein UL36; Provisional
578-829
8.80e-08
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 56.87
E-value: 8.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 578 AP IGTP G i HSAA P INTQG L Q P AAM A NQQ P Q P EGKTSVVLA D GATIVAN P ISNPFSAA PA ATT V vqthsq S ASTNTPAQ G S 657
Cdd:PHA03247 2600 AP VDDR G - DPRG P APPSP L P P DTH A PDP P P P SPSPAANEP D PHPPPTV P PPERPRDD PA PGR V ------ S RPRRARRL G R 2672
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 658 SPRP S ILRKK P ATDG A K P KSEVHV S I A T P VTVSLETISNQN A EQPTVAV PP TAQQPPPTI P SMI AA AS PP SQ PA IALSTI 737
Cdd:PHA03247 2673 AAQA S SPPQR P RRRA A R P TVGSLT S L A D P PPPPPTPEPAPH A LVSATPL PP GPAAARQAS P ALP AA PA PP AV PA GPATPG 2752
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 738 PG A V P VT PP I T TIAAT P TLS A - P VG G T P STVLG P P V PEIKVKE E AE P VDITRPVSTVPP LA TNTVS P SL A LL A SN L SM P P 816
Cdd:PHA03247 2753 GP A R P AR PP T T AGPPA P APP A a P AA G P P RRLTR P A V ASLSESR E SL P SPWDPADPPAAV LA PAAAL P PA A SP A GP L PP P T 2832
250
....*....|...
gi 1720393121 817 S DL P PGAS P RKK P 829
Cdd:PHA03247 2833 S AQ P TAPP P PPG P 2845
PHA03247
PHA03247 large tegument protein UL36; Provisional
8-359
1.44e-05
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 49.55
E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 8 R L R I P QASGLNVEMSSQQF P RLGTPSPGLSQ PPS QIASSGSAGLINQVATVND E AG RD ADVGT R EHVGPSSSLPP R EEKQ 87
Cdd:PHA03247 2597 R P R A P VDDRGDPRGPAPPS P LPPDTHAPDPP PPS PSPAANEPDPHPPPTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQA 2676
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 88 EPVVV RP YPQVQMLPAHHAVAS A T P VAVTAP P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STMS l P P KV PG QVT 167
Cdd:PHA03247 2677 SSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPA 2755
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 168 VTMESSIPQASAI P VATISGQQ G H P SN L HHIMTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TS 247
Cdd:PHA03247 2756 RPARPPTTAGPPA P APPAAPAA G P P RR L TRPAVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AG 2826
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 248 Q LP NAAT AQP AVQHLIHQ P IQ sr P PVTTSSTIP P AVVATVSATRAQSPVITTTA A HAADST L S RP TL S IQHPPS A -- AIS 325
Cdd:PHA03247 2827 P LP PPTS AQP TAPPPPPG P PP -- P SLPLGGSVA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQ 2904
330 340 350
....*....|....*....|....*....|....
gi 1720393121 326 IQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHTMAQ 359
Cdd:PHA03247 2905 PE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPPPPR 2938
PHA02732
PHA02732 hypothetical protein; Provisional
257-486
4.93e-03
hypothetical protein; Provisional
Pssm-ID: 165099 [Multi-domain]
Cd Length: 1467
Bit Score: 40.89
E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 257 PA V Q H L IHQPIQSRPPVTTSST -- IPP AVVA ---- TVSATR A QSPVITTTAAHA A DS T LSR P TL S IQHPPSAA IS IQ r P A 330
Cdd:PHA02732 1182 PA P Q L L SSYIPTGSVLYQDPIF ty IPP GIIG msgt NTFTFK A AQLQLSAASSPP A AT T PTP P PS S SSSSSAQS IS TS - P G 1260
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 331 Q SR ----- DV T TR I TLPSH PAL G TPK qqlhtmaqktifs T G TPV A AAT V apilatntlp STTT A GSVSHTQAPT S TIVTM 405
Cdd:PHA02732 1261 Q IQ ivlng ST T IH I NFLFF PAL S TPK ------------- I G QIL A MPI V ---------- NSSG A FISLYVNSAI S ANFNV 1317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 406 T MPSHS S HA T AVTTSNIPVAKVV P QQITHTSPRIQPDYPP E r S SLIP IS GHRASPNPV A MET RN DNRP S V P VQ F QY F L P T 485
Cdd:PHA02732 1318 T IEYVF S NG T VIKRFTDEPGQIF P LPLINGDEEVIISVEN E - S TTFN IS ANNLGSAQL A LQL RN AISA S L P GP F AF F G P I 1396
.
gi 1720393121 486 Y 486
Cdd:PHA02732 1397 L 1397
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
654-1024
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 571.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 654 A Q GSSPRPSILRKKPAT D GAKPK SEV HV SI A T PVTV SL E TISN QN A EQ P T VAVP P TA Q Q P PPT IP SMI A A A S PPSQP AIA 733
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E GAKPK PDI HV AV A P PVTV AV E ALPG QN S EQ Q T ASAS P PS Q H P AQA IP TIL A P A A PPSQP SVV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 734 LST I P G A VP VTPP ---- ITTIA A T PT LS A p VGG T PSTVLGPPV PEIK V K E EAEP V D ITR pvs T VPPL ATNTV SP S L AL LA 809
Cdd:pfam16014 81 LST L P A A MA VTPP ipas MANVV A P PT QP A - ASS T AACAVSSVL PEIK I K Q EAEP M D TSQ --- S VPPL TPTSI SP A L TS LA 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 810 S NLS M P PS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKSA A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPP 889
Cdd:pfam16014 157 N NLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKSA P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPP 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 890 ITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CRAQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I 969
Cdd:pfam16014 237 ITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CRAQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L 316
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1720393121 970 IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDHKDRVLKLLN 1024
Cdd:pfam16014 317 IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDHKDRVLKLLN 371
PHA03247
PHA03247 large tegument protein UL36; Provisional
578-829
8.80e-08
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 56.87
E-value: 8.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 578 AP IGTP G i HSAA P INTQG L Q P AAM A NQQ P Q P EGKTSVVLA D GATIVAN P ISNPFSAA PA ATT V vqthsq S ASTNTPAQ G S 657
Cdd:PHA03247 2600 AP VDDR G - DPRG P APPSP L P P DTH A PDP P P P SPSPAANEP D PHPPPTV P PPERPRDD PA PGR V ------ S RPRRARRL G R 2672
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 658 SPRP S ILRKK P ATDG A K P KSEVHV S I A T P VTVSLETISNQN A EQPTVAV PP TAQQPPPTI P SMI AA AS PP SQ PA IALSTI 737
Cdd:PHA03247 2673 AAQA S SPPQR P RRRA A R P TVGSLT S L A D P PPPPPTPEPAPH A LVSATPL PP GPAAARQAS P ALP AA PA PP AV PA GPATPG 2752
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 738 PG A V P VT PP I T TIAAT P TLS A - P VG G T P STVLG P P V PEIKVKE E AE P VDITRPVSTVPP LA TNTVS P SL A LL A SN L SM P P 816
Cdd:PHA03247 2753 GP A R P AR PP T T AGPPA P APP A a P AA G P P RRLTR P A V ASLSESR E SL P SPWDPADPPAAV LA PAAAL P PA A SP A GP L PP P T 2832
250
....*....|...
gi 1720393121 817 S DL P PGAS P RKK P 829
Cdd:PHA03247 2833 S AQ P TAPP P PPG P 2845
PHA03247
PHA03247 large tegument protein UL36; Provisional
437-870
9.82e-06
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 49.94
E-value: 9.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 437 PRIQPDY PPER SSLI P i SGH R A S PNPV A METRNDNRP S V P V Q fqyfl PTYPPS A Y P laah T YTPI TS SVSTIRQY P VSAQ 516
Cdd:PHA03247 2641 HPPPTVP PPER PRDD P - APG R V S RPRR A RRLGRAAQA S S P P Q ----- RPRRRA A R P ---- T VGSL TS LADPPPPP P TPEP 2710
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 517 AP NSTIT A QTGVGVASTVHLNPMQ L MTVD A SH A RHIQGIQ P APISTQGIQ P API G TSGIQ P -- AP IGT P GIHSAA P INTQ 594
Cdd:PHA03247 2711 AP HALVS A TPLPPGPAAARQASPA L PAAP A PP A VPAGPAT P GGPARPARP P TTA G PPAPA P pa AP AAG P PRRLTR P AVAS 2790
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 595 GLQPAAMANQQPQ P EGKTSV VLA DG A TI va N P ISN P FSAA P AA T TVVQ T HSQSAS ---- TNT P AQ GS SPRPSIL R KK P AT 670
Cdd:PHA03247 2791 LSESRESLPSPWD P ADPPAA VLA PA A AL -- P P AAS P AGPL P PP T SAQP T APPPPP gppp PSL P LG GS VAPGGDV R RR P PS 2868
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 671 DG -- AKP KSEVHVSIATPVTVSLET i S NQNAEQ P TVAVPPTA Q QPP P TI P SMIAAAS PP S QP AIALSTI P GAV P VTP P I T 748
Cdd:PHA03247 2869 RS pa AKP AAPARPPVRRLARPAVSR - S TESFAL P PDQPERPP Q PQA P PP P QPQPQPP PP P QP QPPPPPP P RPQ P PLA P T T 2947
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 749 TI A ATP tls A P V G GT P STV LG P ------ P VP EIK V KEE A EPVDI tr P V S TV PPL a T NTVSPSLALL AS N L SMPPSDL PP G 822
Cdd:PHA03247 2948 DP A GAG --- E P S G AV P QPW LG A lvpgrv A VP RFR V PQP A PSREA -- P A S ST PPL - T GHSLSRVSSW AS S L ALHEETD PP P 3021
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1720393121 823 A S prkkp R KQ QHVIS -- TE EG D MMETNST D D E K S AAKS L LVKAEKRKS P P 870
Cdd:PHA03247 3022 V S ----- L KQ TLWPP dd TE DS D ADSLFDS D S E R S DLEA L DPLPPEPHD P F 3066
PHA03247
PHA03247 large tegument protein UL36; Provisional
8-359
1.44e-05
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 49.55
E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 8 R L R I P QASGLNVEMSSQQF P RLGTPSPGLSQ PPS QIASSGSAGLINQVATVND E AG RD ADVGT R EHVGPSSSLPP R EEKQ 87
Cdd:PHA03247 2597 R P R A P VDDRGDPRGPAPPS P LPPDTHAPDPP PPS PSPAANEPDPHPPPTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQA 2676
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 88 EPVVV RP YPQVQMLPAHHAVAS A T P VAVTAP P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STMS l P P KV PG QVT 167
Cdd:PHA03247 2677 SSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPA 2755
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 168 VTMESSIPQASAI P VATISGQQ G H P SN L HHIMTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TS 247
Cdd:PHA03247 2756 RPARPPTTAGPPA P APPAAPAA G P P RR L TRPAVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AG 2826
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 248 Q LP NAAT AQP AVQHLIHQ P IQ sr P PVTTSSTIP P AVVATVSATRAQSPVITTTA A HAADST L S RP TL S IQHPPS A -- AIS 325
Cdd:PHA03247 2827 P LP PPTS AQP TAPPPPPG P PP -- P SLPLGGSVA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQ 2904
330 340 350
....*....|....*....|....*....|....
gi 1720393121 326 IQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHTMAQ 359
Cdd:PHA03247 2905 PE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPPPPR 2938
PHA03247
PHA03247 large tegument protein UL36; Provisional
118-512
5.49e-05
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 47.63
E-value: 5.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 118 PP AH L T PA --------- VP LSFSEGLMKP P PKPTMPS RP I AP APPSTMSL P PKVP G QVTVTMES S - I P QASAI P VATISG 187
Cdd:PHA03247 2551 PP PP L P PA appaapdrs VP PPRPAPRPSE P AVTSRAR RP D AP PQSARPRA P VDDR G DPRGPAPP S p L P PDTHA P DPPPPS 2630
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 188 QQGHPSNLHHIMTTN V QMSIIRSNA P G P P ------------ LHIG AS HL P RGAAAA A VMSS - SKV T TVLR P TSQL P NAAT 254
Cdd:PHA03247 2631 PSPAANEPDPHPPPT V PPPERPRDD P A P G rvsrprrarrlg RAAQ AS SP P QRPRRR A ARPT v GSL T SLAD P PPPP P TPEP 2710
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 255 A QP A VQHLIHQ P IQSRPPVTT S STI P P A VVATVSATRAQS P V - ITTT A AHAADSTLSR P TLSIQHPPSAAISIQ RPA QSR 333
Cdd:PHA03247 2711 A PH A LVSATPL P PGPAAARQA S PAL P A A PAPPAVPAGPAT P G g PARP A RPPTTAGPPA P APPAAPAAGPPRRLT RPA VAS 2790
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 334 DVTT R IT LPS ------ H PA LGTPKQQLHTM A QKTIFSTGT P VA A ATV AP ILATNTL P STTTA G SVSHTQAP tsti V TMTM 407
Cdd:PHA03247 2791 LSES R ES LPS pwdpad P PA AVLAPAAALPP A ASPAGPLPP P TS A QPT AP PPPPGPP P PSLPL G GSVAPGGD ---- V RRRP 2866
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 408 PS H S SH A TAVTTSNI PV AKV vpqqithts P R IQPDYPP E RSS L I P ISGH R ASPNPVAMETRNDNR P SV P V Q F Q YFL P TY P 487
Cdd:PHA03247 2867 PS R S PA A KPAAPARP PV RRL --------- A R PAVSRST E SFA L P P DQPE R PPQPQAPPPPQPQPQ P PP P P Q P Q PPP P PP P 2937
410 420
....*....|....*....|....*
gi 1720393121 488 PSAY PLA AH T YTPITSSV S TIRQY P 512
Cdd:PHA03247 2938 RPQP PLA PT T DPAGAGEP S GAVPQ P 2962
PRK14950
PRK14950 DNA polymerase III subunits gamma and tau; Provisional
725-845
3.61e-03
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain]
Cd Length: 585
Bit Score: 41.33
E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 725 SPPS Q PAIA L ST I PGAVPVT P PITTIAA T PTLSA PV GG TP STVLG P PVPEIKVKEEA EPV -- DI T R P VSTVP P L A TNTVS 802
Cdd:PRK14950 344 TSYG Q LPLE L AV I EALLVPV P APQPAKP T AAAPS PV RP TP APSTR P KAAAAANIPPK EPV re TA T P P PVPPR P V A PPVPH 423
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1720393121 803 PSLALLASNLSMP P S D LP P GAS P r KK P R K QQHVISTEE GD MM E 845
Cdd:PRK14950 424 TPESAPKLTRAAI P V D EK P KYT P - PA P P K EEEKALIAD GD VL E 465
PHA02732
PHA02732 hypothetical protein; Provisional
257-486
4.93e-03
hypothetical protein; Provisional
Pssm-ID: 165099 [Multi-domain]
Cd Length: 1467
Bit Score: 40.89
E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 257 PA V Q H L IHQPIQSRPPVTTSST -- IPP AVVA ---- TVSATR A QSPVITTTAAHA A DS T LSR P TL S IQHPPSAA IS IQ r P A 330
Cdd:PHA02732 1182 PA P Q L L SSYIPTGSVLYQDPIF ty IPP GIIG msgt NTFTFK A AQLQLSAASSPP A AT T PTP P PS S SSSSSAQS IS TS - P G 1260
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 331 Q SR ----- DV T TR I TLPSH PAL G TPK qqlhtmaqktifs T G TPV A AAT V apilatntlp STTT A GSVSHTQAPT S TIVTM 405
Cdd:PHA02732 1261 Q IQ ivlng ST T IH I NFLFF PAL S TPK ------------- I G QIL A MPI V ---------- NSSG A FISLYVNSAI S ANFNV 1317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 406 T MPSHS S HA T AVTTSNIPVAKVV P QQITHTSPRIQPDYPP E r S SLIP IS GHRASPNPV A MET RN DNRP S V P VQ F QY F L P T 485
Cdd:PHA02732 1318 T IEYVF S NG T VIKRFTDEPGQIF P LPLINGDEEVIISVEN E - S TTFN IS ANNLGSAQL A LQL RN AISA S L P GP F AF F G P I 1396
.
gi 1720393121 486 Y 486
Cdd:PHA02732 1397 L 1397
Atrophin-1
pfam03154 Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
473-813
5.51e-03
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain]
Cd Length: 991
Bit Score: 40.91
E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 473 P SVPV Q FQYFL P TY PP SAYPLA A H T YT P IT S SV S TIR Q - Y P VSA Q A PN S T I - TA QTGVGVAS T VH L N P MQ L MTVDASHAR 550
Cdd:pfam03154 172 P VLQA Q SGAAS P PS PP PPGTTQ A A T AG P TP S AP S VPP Q g S P ATS Q P PN Q T Q s TA APHTLIQQ T PT L H P QR L PSPHPPLQP 251
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 551 HI Q GIQ P API S T Q GIQPAPIGTSGI - Q P APIG T PGI H SAA P INT Q GLQPAAMAN Q QPQ P E G KTSVVLADGATIVAN P I S N 629
Cdd:pfam03154 252 MT Q PPP P SQV S P Q PLPQPSLHGQMP p M P HSLQ T GPS H MQH P VPP Q PFPLTPQSS Q SQV P P G PSPAAPGQSQQRIHT P P S Q 331
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 630 PFSAA -------------------- P AA TT VVQTHSQSA S TNT P AQG S S P R P ---- S I L RKK PA TDGAKPK S EV H VSI A T 685
Cdd:pfam03154 332 SQLQS qqppreqplppaplsmphik P PP TT PIPQLPNPQ S HKH P PHL S G P S P fqmn S N L PPP PA LKPLSSL S TH H PPS A H 411
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393121 686 P VTVS L ETI S N Q ---- N A EQ P TVAVPPTAQQ P PPTI P SMIAAASP PSQ PAIAL - STI PG AV P V ----- T PP IT T IA A T P T 755
Cdd:pfam03154 412 P PPLQ L MPQ S Q Q lppp P A QP P VLTQSQSLPP P AASH P PTSGLHQV PSQ SPFPQ h PFV PG GP P P itpps G PP TS T SS A M P G 491
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720393121 756 LSA P VGGTP S T ------ VLGP P V P EIKV KEEA e PVDITR P V S TV PP LATNTVS P SLALLA S NL S 813
Cdd:pfam03154 492 IQP P SSASV S S sgpvpa AVSC P L P PVQI KEEA - LDEAEE P E S PP PP PRSPSPE P TVVNTP S HA S 554
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
