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Conserved domains on  [gi|1720393028|ref|XP_030106313|]
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uncharacterized protein LOC240216 isoform X5 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Motor_domain super family cl22853
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
 1-93 3.44e-03

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


The actual alignment was detected with superfamily member COG5059:

Pssm-ID: 473979 [Multi-domain]  Cd Length: 568  Bit Score: 38.95  E-value: 3.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393028   1 MLASVGQGYNTTLLLQGQ-----------ETEAPRFVPQVLQMLFE--EALPLCSSGPVLCTLSLVQINRIgqaRDLLSP 67
Cdd:COG5059    81 LIDSLLLGYNCTVFAYGQtgsgktytmsgTEEEPGIIPLSLKELFSklEDLSMTKDFAVSISYLEIYNEKI---YDLLSP 157

                          90       100
                  ....*....|....*....|....*.
gi 1720393028  68 CVEDLPVLDVAPLGLVVKDASEVEVS 93
Cdd:COG5059   158 NEESLNIREDSLLGVKVAGLTEKHVS 183
 
Name Accession Description Interval E-value
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
1-93 3.44e-03

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 38.95  E-value: 3.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393028   1 MLASVGQGYNTTLLLQGQ-----------ETEAPRFVPQVLQMLFE--EALPLCSSGPVLCTLSLVQINRIgqaRDLLSP 67
Cdd:COG5059    81 LIDSLLLGYNCTVFAYGQtgsgktytmsgTEEEPGIIPLSLKELFSklEDLSMTKDFAVSISYLEIYNEKI---YDLLSP 157

                          90       100
                  ....*....|....*....|....*.
gi 1720393028  68 CVEDLPVLDVAPLGLVVKDASEVEVS 93
Cdd:COG5059   158 NEESLNIREDSLLGVKVAGLTEKHVS 183
 
Name Accession Description Interval E-value
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
1-93 3.44e-03

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 38.95  E-value: 3.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720393028   1 MLASVGQGYNTTLLLQGQ-----------ETEAPRFVPQVLQMLFE--EALPLCSSGPVLCTLSLVQINRIgqaRDLLSP 67
Cdd:COG5059    81 LIDSLLLGYNCTVFAYGQtgsgktytmsgTEEEPGIIPLSLKELFSklEDLSMTKDFAVSISYLEIYNEKI---YDLLSP 157

                          90       100
                  ....*....|....*....|....*.
gi 1720393028  68 CVEDLPVLDVAPLGLVVKDASEVEVS 93
Cdd:COG5059   158 NEESLNIREDSLLGVKVAGLTEKHVS 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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