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Conserved domains on  [gi|1720390870|ref|XP_030105835|]
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small ribosomal subunit protein uS10m isoform X2 [Mus musculus]

Protein Classification

uS10/mL48 family ribosomal protein( domain architecture ID 10448432)

uS10/mL48 family ribosomal protein similar to fungal mitochondrial 37S ribosomal protein S10, human mitochondrial 39S ribosomal protein L48 and 28S ribosomal protein S10, and archaeal 30S ribosomal protein S10

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 75-170 8.36e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


:

Pssm-ID: 459769  Cd Length: 98  Bit Score: 118.36  E-value: 8.36e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720390870  75 ILVKAHDRAVLDSYEYFAVLAAKELGISIK-VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVY 153
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSgPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81

                          90
                  ....*....|....*..
gi 1720390870 154 LEYIQRNLPEGVAMEVT 170
Cdd:pfam00338  82 LRYLQLNLPEGVDVEVK 98
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 75-170 8.36e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 118.36  E-value: 8.36e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720390870  75 ILVKAHDRAVLDSYEYFAVLAAKELGISIK-VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVY 153
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSgPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81

                          90
                  ....*....|....*..
gi 1720390870 154 LEYIQRNLPEGVAMEVT 170
Cdd:pfam00338  82 LRYLQLNLPEGVDVEVK 98
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 72-169 9.17e-12

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 59.02  E-value: 9.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720390870  72 RLSILVKAHDRAVLDSYEYFAVLAAKELGISIKVHEP-PRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTa 150
Cdd:PRK00596    5 KIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPlPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKT- 83

                          90       100
                  ....*....|....*....|
gi 1720390870 151 svyLEYIQR-NLPEGVAMEV 169
Cdd:PRK00596   84 ---VDALMKlDLPAGVDVEI 100
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 71-169 5.28e-11

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 57.06  E-value: 5.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720390870  71 KRLSILVKAHDRAVLDSYEYFAVLAAKELGISIKV-HEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGST 149
Cdd:COG0051     4 QKIRIRLKSYDHRLLDQSVKKIVETAKRTGAKVKGpIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKT 83

                          90       100
                  ....*....|....*....|
gi 1720390870 150 ASvylEYIQRNLPEGVAMEV 169
Cdd:COG0051    84 IR---ALMRLDLPAGVDIEI 100
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 75-170 8.36e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 118.36  E-value: 8.36e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720390870  75 ILVKAHDRAVLDSYEYFAVLAAKELGISIK-VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVY 153
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSgPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81

                          90
                  ....*....|....*..
gi 1720390870 154 LEYIQRNLPEGVAMEVT 170
Cdd:pfam00338  82 LRYLQLNLPEGVDVEVK 98
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 72-169 9.17e-12

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 59.02  E-value: 9.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720390870  72 RLSILVKAHDRAVLDSYEYFAVLAAKELGISIKVHEP-PRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTa 150
Cdd:PRK00596    5 KIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPlPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKT- 83

                          90       100
                  ....*....|....*....|
gi 1720390870 151 svyLEYIQR-NLPEGVAMEV 169
Cdd:PRK00596   84 ---VDALMKlDLPAGVDVEI 100
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 71-169 5.28e-11

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 57.06  E-value: 5.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720390870  71 KRLSILVKAHDRAVLDSYEYFAVLAAKELGISIKV-HEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGST 149
Cdd:COG0051     4 QKIRIRLKSYDHRLLDQSVKKIVETAKRTGAKVKGpIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKT 83

                          90       100
                  ....*....|....*....|
gi 1720390870 150 ASvylEYIQRNLPEGVAMEV 169
Cdd:COG0051    84 IR---ALMRLDLPAGVDIEI 100
AAA_lid_5 pfam17865
Midasin AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found ...
 126-167 9.32e-03

Midasin AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. This lid domain is found in midasin proteins.


Pssm-ID: 407722  Cd Length: 104  Bit Score: 34.48  E-value: 9.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1720390870 126 KHRVQYEMRTLYRCLELkhltgsTASVYLEY-IQRNLPEGVAM 167
Cdd:pfam17865  43 GQRPHYSLRTLCRALSY------ARAIAPRYgLRRALYEGFCM 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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