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Conserved domains on  [gi|1720372630|ref|XP_030102683|]
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pecanex-like protein 1 isoform X6 [Mus musculus]

Protein Classification

oligosaccharide repeat unit polymerase; pecanex family protein( domain architecture ID 10523572)

oligosaccharide repeat unit polymerase may act to polymerize the oligosaccharide repeat units of surface polysaccharides, including O-antigen in Gram-negative bacteria and capsular polysaccharide in Gram-positive bacteria; pecanex family protein similar to Drosophila melanogaster protein pecanex that is involved in neurogenesis

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
 1307-1533 9.17e-138

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


:

Pssm-ID: 461533  Cd Length: 227  Bit Score: 427.12  E-value: 9.17e-138
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630 1307 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 1386
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630 1387 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1466
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720372630 1467 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1533
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 5-138 1.22e-03

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 1.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630    5 AAPSSSASEDANKNPHA--NEFTVPGDRP---PEQSAESKEEQSEKPSLATDSRVCkDDGGKQKEGDVRPKSSSLIHRTT 79
Cdd:PHA03307   192 EPPPSTPPAAASPRPPRrsSPISASASSPapaPGRSAADDAGASSSDSSSSESSGC-GWGPENECPLPRPAPITLPTRIW 270

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630   80 SAHKPGRRRTGKKRASSFDSSRHRDYVSFRGVSGTKPH-SAVFGHDEDSSDQSDLSRAPS 138
Cdd:PHA03307   271 EASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPApSSPRASSSSSSSRESSSSSTS 330
 
Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
 1307-1533 9.17e-138

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


Pssm-ID: 461533  Cd Length: 227  Bit Score: 427.12  E-value: 9.17e-138
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630 1307 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 1386
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630 1387 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1466
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720372630 1467 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1533
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 5-138 1.22e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 1.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630    5 AAPSSSASEDANKNPHA--NEFTVPGDRP---PEQSAESKEEQSEKPSLATDSRVCkDDGGKQKEGDVRPKSSSLIHRTT 79
Cdd:PHA03307   192 EPPPSTPPAAASPRPPRrsSPISASASSPapaPGRSAADDAGASSSDSSSSESSGC-GWGPENECPLPRPAPITLPTRIW 270

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630   80 SAHKPGRRRTGKKRASSFDSSRHRDYVSFRGVSGTKPH-SAVFGHDEDSSDQSDLSRAPS 138
Cdd:PHA03307   271 EASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPApSSPRASSSSSSSRESSSSSTS 330
 
Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
 1307-1533 9.17e-138

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


Pssm-ID: 461533  Cd Length: 227  Bit Score: 427.12  E-value: 9.17e-138
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630 1307 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 1386
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630 1387 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1466
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720372630 1467 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1533
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 5-138 1.22e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 1.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630    5 AAPSSSASEDANKNPHA--NEFTVPGDRP---PEQSAESKEEQSEKPSLATDSRVCkDDGGKQKEGDVRPKSSSLIHRTT 79
Cdd:PHA03307   192 EPPPSTPPAAASPRPPRrsSPISASASSPapaPGRSAADDAGASSSDSSSSESSGC-GWGPENECPLPRPAPITLPTRIW 270

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720372630   80 SAHKPGRRRTGKKRASSFDSSRHRDYVSFRGVSGTKPH-SAVFGHDEDSSDQSDLSRAPS 138
Cdd:PHA03307   271 EASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPApSSPRASSSSSSSRESSSSSTS 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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