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Conserved domains on  [gi|1720363651|ref|XP_030101309|]
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proteasome activator complex subunit 4 isoform X3 [Mus musculus]

Protein Classification

DUF3437 domain-containing protein( domain architecture ID 10571137)

DUF3437 domain-containing protein similar to Homo sapiens proteasome activator 200 kDa (PA200) that functions together with proteasomes within cells and responds to a specific radiation-induced damage independent of the stage of cell cycle arrest

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3437 pfam11919
Domain of unknown function (DUF3437); This presumed domain is functionally uncharacterized. ...
 915-1000 5.33e-46

Domain of unknown function (DUF3437); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length.


:

Pssm-ID: 463397  Cd Length: 86  Bit Score: 159.25  E-value: 5.33e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720363651  915 VKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLL 994
Cdd:pfam11919    1 IRRHGAVLGLGALVLAFPYDVPPWVPEVLSELASHASDPAPIGKTVKKTLSEFKRTHQDTWEEDKKKFTEDQLEDLEDVL 80


                   ....*.
gi 1720363651  995 VSPCYY 1000
Cdd:pfam11919   81 SWPSYY 86
 
Name Accession Description Interval E-value
DUF3437 pfam11919
Domain of unknown function (DUF3437); This presumed domain is functionally uncharacterized. ...
 915-1000 5.33e-46

Domain of unknown function (DUF3437); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length.


Pssm-ID: 463397  Cd Length: 86  Bit Score: 159.25  E-value: 5.33e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720363651  915 VKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLL 994
Cdd:pfam11919    1 IRRHGAVLGLGALVLAFPYDVPPWVPEVLSELASHASDPAPIGKTVKKTLSEFKRTHQDTWEEDKKKFTEDQLEDLEDVL 80


                   ....*.
gi 1720363651  995 VSPCYY 1000
Cdd:pfam11919   81 SWPSYY 86
 
Name Accession Description Interval E-value
DUF3437 pfam11919
Domain of unknown function (DUF3437); This presumed domain is functionally uncharacterized. ...
 915-1000 5.33e-46

Domain of unknown function (DUF3437); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length.


Pssm-ID: 463397  Cd Length: 86  Bit Score: 159.25  E-value: 5.33e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720363651  915 VKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLL 994
Cdd:pfam11919    1 IRRHGAVLGLGALVLAFPYDVPPWVPEVLSELASHASDPAPIGKTVKKTLSEFKRTHQDTWEEDKKKFTEDQLEDLEDVL 80


                   ....*.
gi 1720363651  995 VSPCYY 1000
Cdd:pfam11919   81 SWPSYY 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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