|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2789-2867 |
1.57e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 104.98 E-value: 1.57e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720360658 2789 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKitmSRPFTKFRTAVRVVIAVLRLRFLVKKW 2867
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1085-1654 |
9.91e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 9.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1085 KQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKS 1164
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1165 VLWNQKETLTNEAKEREAALQEEVESLTRVQwESRKQSEKDRATLLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQL 1244
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELE-EELEELEEELEEAEEELEEAEAELAEAE------EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1245 AALDKHLRSQRQFMDDQAAEREHEreefQQEIQRLEGQLRQAARprppgpRDSQVELLQEKLREKLDGFNELVIKKDFAD 1324
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQL----EELEEAEEALLERLER------LEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1325 QQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD--LLLTTVSRSGLDEAGCPMLPQGSS 1402
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEGVKAALLLAGLRGLAGAVAV 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1403 SRGPEAQPDVTERALLqhENEVVHRRNSEIDELKSLIENLQEN-------------QRQLQKDKAEEIEQLHEVIEKLQS 1469
Cdd:COG1196 529 LIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1470 ELSLMGPKVHEVSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVF--GQLLADQAHGHSQALEALQQRLQDAEE 1547
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSagGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1548 VAARHLAELEHcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAvnkwkvshsleleAILLALAHFRHALEQQT 1627
Cdd:COG1196 687 RLAEEELELEE-ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE-------------ELLEELLEEEELLEEEA 752
|
570 580
....*....|....*....|....*..
gi 1720360658 1628 CATPDEPPELRQLRVQCARLSHQLQVL 1654
Cdd:COG1196 753 LEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-584 |
1.16e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 118 LELEALRLSLNNMHTAQLELTQA-NLQKEKETALTELREMLNGRRAQELALLQSRQQcELELLREQHAREKEEMAlrsgq 196
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDiARLEERRRELEERLEELEEELAELEEELEELEE-ELEELEEELEEAEEELE----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 197 EAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQsemeglQSQFQKELSEQKVELEKIFQAKHEAEV 276
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ------LEELEEAEEALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 277 SLKNLEAQHQAAIKKLQEDLQSEhcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLEsMKTNREE 356
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEG 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 357 LNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLEST 436
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAR 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 437 EISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEER 516
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 517 LASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLL 584
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
483-1156 |
1.99e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 483 KAEEKIQQMKEEFQK---KEAEWELSREELKREAE--ERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQI 557
Cdd:COG1196 176 EAERKLEATEENLERledILGELERQLEPLERQAEkaERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 558 LDLERSLMEQQGHLRQLEQELTRDDLlpcsqcgqepamaQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQ 637
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 638 DAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKR-HL 716
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAaQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 717 SNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKKEScHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHIEN 796
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 797 GKGPAADLQGAHQQDPAMALHNEGHLlveDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQV 876
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFL---EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 877 AQVRDKvFLLNRELEecRAELEQLQQRRERENQEgttlicmlRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSR 956
Cdd:COG1196 559 AAAAIE-YLKAAKAG--RATFLPLDKIRARAALA--------AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 957 ISERAGLLLDHEDAADTSDARLAAAALGdmwsdeglleidrtlpegaetssvceisshvcesffispentldceqpirrV 1036
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEG---------------------------------------------------G 656
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1037 YQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEG 1116
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 1720360658 1117 FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAAREL 1156
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
133-647 |
3.28e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 3.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 133 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEM-------------ALRSGQEAA 199
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAkkkaeeakkkadaAKKKAEEAK 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 200 ELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKVELE----------KIFQ 269
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADelkkaaaakkKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 270 AKHEAEVSLKNLEAQHQAAIKKLQEDLQ--SEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQL 347
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 348 ---ESMKTNREELNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR 424
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 425 LQEAREdsLESTEISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQV---------------KLSKAEEKIQ 489
Cdd:PTZ00121 1583 AEEAKK--AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlkkkeaeekkkaeELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 490 QMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESsmrhlqdQQAAQILDLERSLMEQQG 569
Cdd:PTZ00121 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-------KKAEELKKAEEENKIKAE 1733
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 570 HLRQLEQELTRDdllpcsqcGQEPAMAQEEKNGALLREKEDCAlqllmAQNRFLEERKEIMEKFAKEQDAFLRDAQEK 647
Cdd:PTZ00121 1734 EAKKEAEEDKKK--------AEEAKKDEEEKKKIAHLKKEEEK-----KAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
860-1471 |
2.52e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 2.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 860 QAELAKPQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEGTTLIC-MLRADLELAQGEGKALRDALRR 938
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkLEEAELKELQAELEELEEELEE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 939 LLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAalgdmwsdEGLLEIDRTLPEG--AETSSVCEISSHV- 1015
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL--------ERLQENLEGFSEGvkALLKNQSGLSGILg 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1016 CESFFISPENTLDceqpirrvyQSLSTAVEGLLEMALDSSKQ--------LEEARQ-------LHRCVEREFRHRNEEMA 1080
Cdd:TIGR02168 524 VLSELISVDEGYE---------AAIEAALGGRLQAVVVENLNaakkaiafLKQNELgrvtflpLDSIKGTEIQGNDREIL 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1081 QAMQKQQELLERLREESAA--------------KDRLALELHTAKGLLEGFKV-----EKVDLQEALGKKEESEQQLIL- 1140
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKlrkalsyllggvlvVDDLDNALELAKKLRPGYRIvtldgDLVRPGGVITGGSAKTNSSILe 674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1141 ---ELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQwESRKQSEKDRATLLSQMRVLE 1217
Cdd:TIGR02168 675 rrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR-KDLARLEAEVEQLEERIAQLS 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1218 SELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprppgprdS 1297
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR---------E 824
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1298 QVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMG 1377
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1378 DLllttvsRSGLDEAgcpmlpqgsssrgpeaqpdvteRALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEI 1457
Cdd:TIGR02168 905 EL------ESKRSEL----------------------RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
650
....*....|....
gi 1720360658 1458 EQLHEVIEKLQSEL 1471
Cdd:TIGR02168 957 EALENKIEDDEEEA 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2195-2549 |
9.71e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 9.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2195 RRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyg 2274
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2275 hvtwsycgtssasAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNN 2354
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2355 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ 2434
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2435 ETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQErcVELRREKEVSGNLRSAVDALRTHKQELGC-CL 2513
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAgAV 526
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720360658 2514 QREREKAAWLQAELEQLSARVKEQEARKDARRMERR 2549
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1163 |
1.54e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 345 SQLESMKTN-------REELNGSWDPVLAQASHLE-------ELEHLRSGFAQQQQQERAQHESELEHLrvyfEKKLKDA 410
Cdd:TIGR02168 179 RKLERTRENldrlediLNELERQLKSLERQAEKAErykelkaELRELELALLVLRLEELREELEELQEE----LKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 411 EKTYQEDLTVFQQRLQEARedsLESTEISSSCVLPEETSGREGKEPPDpLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ 490
Cdd:TIGR02168 255 LEELTAELQELEEKLEELR---LEVSELEEEIEELQKELYALANEISR-LEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 491 MKEEFQKKEAEWELSREELKREAEErLASMFLELREKAESEKLSIISRFEHRES------SMRHLQDQQAAQILDLERSL 564
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 565 MEQQGHLRQLEQELtrddllpcSQCGQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAfLRDA 644
Cdd:TIGR02168 410 ERLEDRRERLQQEI--------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA-LDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 645 QEKHNHelqllqqGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEIS---ALEKRHLSNLDE 721
Cdd:TIGR02168 481 ERELAQ-------LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAieaALGGRLQAVVVE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 722 LESCYVADVQTIRdEHQQALELLRAELEEQLQKKESCHREMLTQelENLKRQHAEELQSVRDSLRMEMSAqhIENGKGPA 801
Cdd:TIGR02168 554 NLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKALSY--LLGGVLVV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 802 ADLQGAHQQdpAMALHNEGHLLVEDGDAVLRSvdaeGLLhqAGPQELGDAHTVEMQKSQAELAkpQELQASQDQVAQVRD 881
Cdd:TIGR02168 629 DDLDNALEL--AKKLRPGYRIVTLDGDLVRPG----GVI--TGGSAKTNSSILERRREIEELE--EKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 882 KVFLLNRELEECRAELEQLQQRRERENQEgttlICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERA 961
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQ----ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 962 GLLLDHEDAADTSDARLAAAAlgdmwsdEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTL-DCEQPIRRVYQSL 1040
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLK-------EELKALREALDELRAELTLLNEEAANLRERLESLERRIaATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1041 STAVEGLLEMAL----------DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTA 1110
Cdd:TIGR02168 848 EELSEDIESLAAeieeleelieELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 1111 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
142-529 |
2.64e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.99 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 142 LQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQ 221
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 222 DWESERELCLENLRQELSLKHQSEMEGLQSQF-QKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA--IKKLQEDLQS 298
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIdEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREktEKLKVEEEKE 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 299 EHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLwSQLESMKTNREELNgswdpvlaqashlEELEHLR 378
Cdd:pfam02463 794 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEEL-ALELKEEQKLEKLA-------------EEELERL 859
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 379 SGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPD 458
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 459 PLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ-------MKEEFQKKEAEWELSREELKREAEERLASMFLELREKAE 529
Cdd:pfam02463 940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEElgkvnlmAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-430 |
2.23e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 156 MLNGRRAQELALLQSRQQcELELLREQhaREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWE---SERELCLE 232
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR-EIEELEEK--IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqiSALRKDLA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 233 NLRQ--ELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEA---QHQAAIKKLQEDLQSEHCQY--LQ 305
Cdd:TIGR02168 737 RLEAevEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELtlLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 306 DLEQKFREKEKAKELELETLQASYEDLKAQS---QEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEELEHLRSGFA 382
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1720360658 383 QQQQQERAQHESELEHLRVYFEkKLKDAEKTYQEDLTVFQQRLQEARE 430
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
485-1363 |
4.56e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 485 EEKIQQMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSL 564
Cdd:pfam02463 194 ELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 565 MEQQghLRQLEQELTRDDLLPCSQCGQEPAMAQEEKNGALLREKedcaLQLLMAQNRFLEERKEimekfaKEQDAFLRDA 644
Cdd:pfam02463 274 NKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK----LKESEKEKKKAEKELK------KEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 645 QEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELES 724
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 725 CYVADVQTIRDEHQQALELLRAELEEQLQKKEschremLTQELENLKRQHAEELQSVRdslrmemsAQHIENGKGPAADL 804
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEEL------EKQELKLLKDELELKKSEDL--------LKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 805 QGAHQQDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVemqksqAELAKPQELQASQDQVAQVRDKVF 884
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA------VENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 885 llnrELEECRAELEQLQQRRERENQEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLL 964
Cdd:pfam02463 562 ----ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 965 LDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAV 1044
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1045 EGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALEL-HTAKGLLEGFKVEKVD 1123
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEReKTEKLKVEEEKEEKLK 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1124 LQEALGKKEESEQQLILEledlrkQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLtrvqwesrkqSE 1203
Cdd:pfam02463 798 AQEEELRALEEELKEEAE------LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL----------EE 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1204 KDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQ---EIQRLE 1280
Cdd:pfam02463 862 EITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKyeeEPEELL 941
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1281 GQLRQAARPRPPGPRDSQVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKK 1360
Cdd:pfam02463 942 LEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
...
gi 1720360658 1361 SME 1363
Cdd:pfam02463 1022 FLE 1024
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2336-2596 |
1.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2336 SRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKE---LQIEASRCEALLAQEKGQLSELQKSLEAERSR----SLE 2408
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEEleqLRKELEELSRQISALRKDLARLEAEVEQLEERiaqlSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2409 LSEALQHERLLTEQLSRNSQEACARQETQVQhaLLRKLKAEKTRALELEAMLEKVQKQAAHTQqqleaqaqercVELRRE 2488
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKEELKALREALDELRAELTLLN-----------EEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2489 KEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKWQRDK--ET 2566
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElsEE 902
|
250 260 270
....*....|....*....|....*....|
gi 1720360658 2567 LRELEIQRQRDEHKIEQLQRLVRELRWKEE 2596
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2212-2597 |
3.42e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2212 ANELQKtlSKEQETASDVRK----RLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLR---LRYGHVTWSYCGTS 2284
Cdd:PTZ00121 1184 AEEVRK--AEELRKAEDARKaeaaRKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaeeERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2285 SASAGRAVLDGKEKELKVVlEELE--SERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLcvALKH 2362
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKA-DELKkaEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKA 1338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2363 ERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSealQHERLLTEQLSRNSQEACARQETqvqhal 2442
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK---AEEKKKADEAKKKAEEDKKKADE------ 1409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2443 LRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRthKQELGCCLQREREKAAW 2522
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--KADEAKKKAEEAKKADE 1487
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720360658 2523 LQAELEQlsARVKEQEARKDArrmERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEV 2597
Cdd:PTZ00121 1488 AKKKAEE--AKKKADEAKKAA---EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1053-1369 |
5.25e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1053 DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQ-KQQELLERLREESAAKDRLALELHTAKgllEGFKVEKVDLQEALGKK 1131
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1132 EESEQqliLELEDLRKQLQQ--AARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSE-KDRAT 1208
Cdd:PTZ00121 1602 EEEKK---MKAEEAKKAEEAkiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1209 LLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQ---RQFMDDQAAEREHEREEFQQEIQRLEG---- 1281
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAeeeNKIKAEEAKKEAEEDKKKAEEAKKDEEekkk 1758
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1282 --QLRQAARPRPPGPRDSQVELLQEKLREKLDGFNELVIK--KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEK 1357
Cdd:PTZ00121 1759 iaHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKkiKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADS 1838
|
330
....*....|..
gi 1720360658 1358 QKKSMEELKEKE 1369
Cdd:PTZ00121 1839 KNMQLEEADAFE 1850
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
203-532 |
5.65e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 48.86 E-value: 5.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 203 EKLRSEMEKNAQT--------IETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKvelekifqaKHEA 274
Cdd:NF033838 72 SEIQKSLDKRKHTqnvalnkkLSDIKTEYLYELNVLKEKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 275 EVSLKNLEAQHQAAIKKlQEDLQSEHCQYLQDLEQKFREKE-KAKELELETLQAsyEDLKAQSQEEIRLLWSQLESMKtn 353
Cdd:NF033838 143 EATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEIAESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK-- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 354 reelngswdpvlAQASHLEELEHLRsgfaqqqqqERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR--LQE-ARE 430
Cdd:NF033838 218 ------------AEATRLEKIKTDR---------EKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRgvLGEpATP 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 431 DSLESTEISSSCVLPEETsgregkePPDPlDLQLGQpKVQESlvedcQVKLSKAEEKIQQMKEEFQK------------- 497
Cdd:NF033838 277 DKKENDAKSSDSSVGEET-------LPSP-SLKPEK-KVAEA-----EKKVEEAKKKAKDQKEEDRRnyptntyktlele 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720360658 498 --------KEAEWELSREELKR-EAEERLAsmflELREKAESEK 532
Cdd:NF033838 343 iaesdvkvKEAELELVKEEAKEpRNEEKIK----QAKAKVESKK 382
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2296-2598 |
1.05e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2296 KEKELKVVLEELESERgkgqALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVA-LKHERAAKDNLQKEL 2374
Cdd:pfam02463 171 KKEALKKLIEETENLA----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2375 QIEASRCEALLAQEKGQLSELQKSLEAERSRslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRAL 2454
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2455 ELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARV 2534
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720360658 2535 KEQEARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEVS 2598
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1070-1374 |
1.20e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1070 REFRHRNEEMAQAMQKQQELLERLREesaakdrLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQL 1149
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIID-------LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1150 QQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLE---SELEDQLVQ 1226
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLErrkVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1227 HRGCAQLAEEVATLKQQLAALDKHL-------RSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAarprppgpRDSQV 1299
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKElkeleikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER--------LSSAA 390
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720360658 1300 ELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE 1374
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2789-2867 |
1.57e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 104.98 E-value: 1.57e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720360658 2789 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKitmSRPFTKFRTAVRVVIAVLRLRFLVKKW 2867
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1085-1654 |
9.91e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 9.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1085 KQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKS 1164
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1165 VLWNQKETLTNEAKEREAALQEEVESLTRVQwESRKQSEKDRATLLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQL 1244
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELE-EELEELEEELEEAEEELEEAEAELAEAE------EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1245 AALDKHLRSQRQFMDDQAAEREHEreefQQEIQRLEGQLRQAARprppgpRDSQVELLQEKLREKLDGFNELVIKKDFAD 1324
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQL----EELEEAEEALLERLER------LEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1325 QQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD--LLLTTVSRSGLDEAGCPMLPQGSS 1402
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEGVKAALLLAGLRGLAGAVAV 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1403 SRGPEAQPDVTERALLqhENEVVHRRNSEIDELKSLIENLQEN-------------QRQLQKDKAEEIEQLHEVIEKLQS 1469
Cdd:COG1196 529 LIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1470 ELSLMGPKVHEVSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVF--GQLLADQAHGHSQALEALQQRLQDAEE 1547
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSagGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1548 VAARHLAELEHcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAvnkwkvshsleleAILLALAHFRHALEQQT 1627
Cdd:COG1196 687 RLAEEELELEE-ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE-------------ELLEELLEEEELLEEEA 752
|
570 580
....*....|....*....|....*..
gi 1720360658 1628 CATPDEPPELRQLRVQCARLSHQLQVL 1654
Cdd:COG1196 753 LEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1038-1602 |
6.63e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 6.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1038 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQEL-------LERLREESAAKDRLALELHTA 1110
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdiarlEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1111 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVES 1190
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1191 LtrvqwesrKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddqaaEREHERE 1270
Cdd:COG1196 409 E--------EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA-------ELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1271 EFQQEIQRLEGQLRQAArprppgprdsQVELLQEKLREKLDGFNELVIKKDFADQQ--------LLIQEEEIKRLEETNA 1342
Cdd:COG1196 474 LLEAALAELLEELAEAA----------ARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavaVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1343 SIQRQMVQLQEELEKQKKSMEELKEKeilkqenmgdlLLTTVSRSGLDEAgcpmlpQGSSSRGPEAQPDVTERALLQHEN 1422
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYLKAA-----------KAGRATFLPLDKI------RARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1423 EVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPkvhevsdpqagslhselaclRGEGLG 1502
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGG--------------------SLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1503 GQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMASQIQEFAATLK 1582
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580
....*....|....*....|
gi 1720360658 1583 AKEAIIEQRDLEIDAVNKWK 1602
Cdd:COG1196 747 LLEEEALEELPEPPDLEELE 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-584 |
1.16e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 118 LELEALRLSLNNMHTAQLELTQA-NLQKEKETALTELREMLNGRRAQELALLQSRQQcELELLREQHAREKEEMAlrsgq 196
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDiARLEERRRELEERLEELEEELAELEEELEELEE-ELEELEEELEEAEEELE----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 197 EAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQsemeglQSQFQKELSEQKVELEKIFQAKHEAEV 276
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ------LEELEEAEEALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 277 SLKNLEAQHQAAIKKLQEDLQSEhcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLEsMKTNREE 356
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEG 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 357 LNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLEST 436
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAR 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 437 EISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEER 516
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 517 LASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLL 584
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
867-1467 |
4.32e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 4.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 867 QELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEGTTLicmlRADLELAQGEGKALRDALRRLLDLFGDT 946
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 947 LKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEgaetssvceisshvcesffispent 1026
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE------------------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1027 ldceqpIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALE 1106
Cdd:COG1196 370 ------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1107 LHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQE 1186
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1187 EVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATL------KQQLAALDKHLRSQRQFMDD 1260
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkirARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1261 QAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQVELLQEKLREKLDGFNELVIKKDFA----DQQLLIQEEEIKR 1336
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSrrelLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1337 LEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERA 1416
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720360658 1417 LLQHENEVVHRRNSE--------IDELKSLIENLQENQRQLQkDKAEEIEQLHEVIEKL 1467
Cdd:COG1196 764 ELERELERLEREIEAlgpvnllaIEEYEELEERYDFLSEQRE-DLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
142-723 |
1.42e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 142 LQKEKETAL--TELREMLNGRRAQELALlqsrqqcELELLREQHAREKEEMalrsgQEAAELKEKLRSEMEKNAQTIETL 219
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLL-------KLRELEAELEELEAEL-----EELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 220 KQDweserelcLENLRQELSLKHQSEMEgLQSQFQKELSEQKVELEKIfQAKHEAEVSLKNLEAQHQAAIKKLQEDLQSe 299
Cdd:COG1196 273 RLE--------LEELELELEEAQAEEYE-LLAELARLEQDIARLEERR-RELEERLEELEEELAELEEELEELEEELEE- 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 300 hcqyLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELngswdpvLAQASHLEELEHLRS 379
Cdd:COG1196 342 ----LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA-------AELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 380 GfaqqQQQERAQHESELEHLrvyfEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEISSScVLPEETSGREGKEPPDP 459
Cdd:COG1196 411 A----LLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL-LAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 460 LDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKE-----AEWELSREELKREAEERLASMFLELREKAESEKLS 534
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 535 IIsrfehressmRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLLPCSQCGQEPAMAQEEKNGALLREKEDCALQ 614
Cdd:COG1196 562 AI----------EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 615 LLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLE 694
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
570 580
....*....|....*....|....*....
gi 1720360658 695 THVAELQVKHNAEISALEKRHLSNLDELE 723
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEE 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
483-1156 |
1.99e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 483 KAEEKIQQMKEEFQK---KEAEWELSREELKREAE--ERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQI 557
Cdd:COG1196 176 EAERKLEATEENLERledILGELERQLEPLERQAEkaERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 558 LDLERSLMEQQGHLRQLEQELTRDDLlpcsqcgqepamaQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQ 637
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELEL-------------ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 638 DAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKR-HL 716
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAaQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 717 SNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKKEScHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHIEN 796
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 797 GKGPAADLQGAHQQDPAMALHNEGHLlveDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQV 876
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFL---EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 877 AQVRDKvFLLNRELEecRAELEQLQQRRERENQEgttlicmlRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSR 956
Cdd:COG1196 559 AAAAIE-YLKAAKAG--RATFLPLDKIRARAALA--------AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 957 ISERAGLLLDHEDAADTSDARLAAAALGdmwsdeglleidrtlpegaetssvceisshvcesffispentldceqpirrV 1036
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEG---------------------------------------------------G 656
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1037 YQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEG 1116
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 1720360658 1117 FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAAREL 1156
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
133-647 |
3.28e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 3.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 133 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEM-------------ALRSGQEAA 199
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAkkkaeeakkkadaAKKKAEEAK 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 200 ELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKVELE----------KIFQ 269
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADelkkaaaakkKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 270 AKHEAEVSLKNLEAQHQAAIKKLQEDLQ--SEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQL 347
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 348 ---ESMKTNREELNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR 424
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 425 LQEAREdsLESTEISSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQV---------------KLSKAEEKIQ 489
Cdd:PTZ00121 1583 AEEAKK--AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlkkkeaeekkkaeELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 490 QMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESsmrhlqdQQAAQILDLERSLMEQQG 569
Cdd:PTZ00121 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-------KKAEELKKAEEENKIKAE 1733
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 570 HLRQLEQELTRDdllpcsqcGQEPAMAQEEKNGALLREKEDCAlqllmAQNRFLEERKEIMEKFAKEQDAFLRDAQEK 647
Cdd:PTZ00121 1734 EAKKEAEEDKKK--------AEEAKKDEEEKKKIAHLKKEEEK-----KAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
634-1193 |
3.72e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 3.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 634 AKEQDAFLRdAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQAL---LETHVAELQvKHNAEISA 710
Cdd:COG1196 222 LKELEAELL-LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELeleLEEAQAEEY-ELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 711 LEKRHLSNLDELEScyvADVQTIRDEHQQALELLRAELEEQLQKKESCHREMLTQELENLKRQHAEELQSVRDSLRMEMS 790
Cdd:COG1196 300 LEQDIARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 791 AQHIENGkgpAADLQGAHQQDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGpQELGDAHTVEMQKSQAELAKPQELQ 870
Cdd:COG1196 377 AEEELEE---LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE-EALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 871 ASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEGTTLICMLRADLELAQGEGKA-LRDALRRLLDLFGDTLKA 949
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAlLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 950 AVTLKSRISERAGLLLDHEDAADTSDARLAAAALGDmwSDEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDC 1029
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA--AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1030 EQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHT 1109
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1110 AKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVE 1189
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
....
gi 1720360658 1190 SLTR 1193
Cdd:COG1196 771 RLER 774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-784 |
4.15e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 4.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 152 ELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELK----EKLRSEMEKNAQTIETLKQDWESER 227
Cdd:PTZ00121 1186 EVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKkdaeEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 228 ELCLENLRQELSLKHQsEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDL 307
Cdd:PTZ00121 1266 ARRQAAIKAEEARKAD-ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 308 EQKFREKEKAKELELETLQASYEDLKAQSQEEIRllwsQLESMKTNREELNGSWDPVLAQASHLEELEHLRSGFAQQQQQ 387
Cdd:PTZ00121 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK----KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 388 ERAQHESelEHLRVYFEKKLKDAEKTYQEDLtvfQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPDPLDLQLGQP 467
Cdd:PTZ00121 1421 DEAKKKA--EEKKKADEAKKKAEEAKKADEA---KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 468 KVQESLVEDCQVKLSKAEE--KIQQMKEEFQKKEAEWELSREELKREAEERLASmflELREKAESEKLSIISRFEH--RE 543
Cdd:PTZ00121 1496 KKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKAEEakKA 1572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 544 SSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTrddllpcsqcGQEPAMAQEEKNGA-LLREKEDCALQLLMAQNRF 622
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK----------AEEAKKAEEAKIKAeELKKAEEEKKKVEQLKKKE 1642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 623 LEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAElQV 702
Cdd:PTZ00121 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE-EL 1721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 703 KHNAEISALEKRHLSNLDELESCYVADVQTIRDEH---QQALELLRAELEEQLQKKESCHREMLTQELENLKRQHAEELQ 779
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKkkiAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
....*
gi 1720360658 780 SVRDS 784
Cdd:PTZ00121 1802 DIFDN 1806
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-631 |
1.18e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 118 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQE 197
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 198 AAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQ-SEMEGLQSQFQKELSEQKVELEKIFQAKHEAEV 276
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 277 SLKNLEAQHQAAIKKLQEDLQSEHcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREE 356
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEE-ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 357 LNGSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQE--DLTVFQQRLQEAREDSL- 433
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvaVLIGVEAAYEAALEAALa 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 434 --------ESTEISSSCV--LPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWE 503
Cdd:COG1196 546 aalqnivvEDDEVAAAAIeyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 504 LSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDL 583
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1720360658 584 lpcsqcgQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIME 631
Cdd:COG1196 706 -------ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
860-1471 |
2.52e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 2.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 860 QAELAKPQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEGTTLIC-MLRADLELAQGEGKALRDALRR 938
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkLEEAELKELQAELEELEEELEE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 939 LLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAalgdmwsdEGLLEIDRTLPEG--AETSSVCEISSHV- 1015
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL--------ERLQENLEGFSEGvkALLKNQSGLSGILg 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1016 CESFFISPENTLDceqpirrvyQSLSTAVEGLLEMALDSSKQ--------LEEARQ-------LHRCVEREFRHRNEEMA 1080
Cdd:TIGR02168 524 VLSELISVDEGYE---------AAIEAALGGRLQAVVVENLNaakkaiafLKQNELgrvtflpLDSIKGTEIQGNDREIL 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1081 QAMQKQQELLERLREESAA--------------KDRLALELHTAKGLLEGFKV-----EKVDLQEALGKKEESEQQLIL- 1140
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKlrkalsyllggvlvVDDLDNALELAKKLRPGYRIvtldgDLVRPGGVITGGSAKTNSSILe 674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1141 ---ELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQwESRKQSEKDRATLLSQMRVLE 1217
Cdd:TIGR02168 675 rrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR-KDLARLEAEVEQLEERIAQLS 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1218 SELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprppgprdS 1297
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR---------E 824
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1298 QVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMG 1377
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1378 DLllttvsRSGLDEAgcpmlpqgsssrgpeaqpdvteRALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEI 1457
Cdd:TIGR02168 905 EL------ESKRSEL----------------------RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
650
....*....|....
gi 1720360658 1458 EQLHEVIEKLQSEL 1471
Cdd:TIGR02168 957 EALENKIEDDEEEA 970
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
858-1689 |
3.50e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 3.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 858 KSQAELAkpQELQASQDQVAQVrdKVFLLNRELEECRAELEQLQQRRERENQEGTTLicmlRADLELAQGEGKALRDALR 937
Cdd:TIGR02168 206 ERQAEKA--ERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEEL----TAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 938 RLLDLFGD---TLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAalgdmwsdegLLEIDRTLPE-GAETSSVCEISs 1013
Cdd:TIGR02168 278 ELEEEIEElqkELYALANEISRLEQQKQILRERLANLERQLEELEAQ----------LEELESKLDElAEELAELEEKL- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1014 hvcesffispentldceQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERL 1093
Cdd:TIGR02168 347 -----------------EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1094 REESAAKDRLALELHTAKGLLEgfKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETL 1173
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1174 TNEAKEREAaLQEEVESLTRV---QWESRKQSEKDRATLLSQMRV---LESELEDQLVQHRGcAQLAEEVATLKQQLAAL 1247
Cdd:TIGR02168 488 QARLDSLER-LQENLEGFSEGvkaLLKNQSGLSGILGVLSELISVdegYEAAIEAALGGRLQ-AVVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1248 DKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQ-----------VELLQE--KLREKLDGFN 1314
Cdd:TIGR02168 566 KQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvVDDLDNalELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1315 ELVIKKDF--------------ADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLl 1380
Cdd:TIGR02168 646 RIVTLDGDlvrpggvitggsakTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL- 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1381 lttvsrsgldeagcpmlPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQL 1460
Cdd:TIGR02168 725 -----------------SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1461 HEVIEKLQSELSLmgpkvhevSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQ 1540
Cdd:TIGR02168 788 EAQIEQLKEELKA--------LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1541 RLQDAEEVAARHLAELEHCVALREAEVEAMA---SQIQEFAATLKAKEAIIEQRDLEIDAVNKWKVSHSLELEAILLALA 1617
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALAllrSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720360658 1618 HFRHALEQQTCATPDEPPELRQLRVQCARlshqlqvlyrpflKCRMQLDQHQPHVASIGCANPCADDELEQE 1689
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEALENKIEDDEE-------------EARRRLKRLENKIKELGPVNLAAIEEYEEL 998
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1068-1367 |
5.41e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 5.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1068 VEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQlilELEDLRK 1147
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1148 QLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQS----EKDRATLLSQMRVLESELEDQ 1223
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElsklEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1224 lvqHRGCAQLAEEVATLKQQLAALDkhlrSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRppGPRDSQVELLQ 1303
Cdd:TIGR02169 825 ---TLEKEYLEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL--GDLKKERDELE 895
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1304 EKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE------LEKQKKSMEELKE 1367
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsLEDVQAELQRVEE 965
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2195-2549 |
9.71e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 9.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2195 RRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyg 2274
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2275 hvtwsycgtssasAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNN 2354
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2355 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ 2434
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2435 ETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQErcVELRREKEVSGNLRSAVDALRTHKQELGC-CL 2513
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAgAV 526
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720360658 2514 QREREKAAWLQAELEQLSARVKEQEARKDARRMERR 2549
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1163 |
1.54e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 345 SQLESMKTN-------REELNGSWDPVLAQASHLE-------ELEHLRSGFAQQQQQERAQHESELEHLrvyfEKKLKDA 410
Cdd:TIGR02168 179 RKLERTRENldrlediLNELERQLKSLERQAEKAErykelkaELRELELALLVLRLEELREELEELQEE----LKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 411 EKTYQEDLTVFQQRLQEARedsLESTEISSSCVLPEETSGREGKEPPDpLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ 490
Cdd:TIGR02168 255 LEELTAELQELEEKLEELR---LEVSELEEEIEELQKELYALANEISR-LEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 491 MKEEFQKKEAEWELSREELKREAEErLASMFLELREKAESEKLSIISRFEHRES------SMRHLQDQQAAQILDLERSL 564
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 565 MEQQGHLRQLEQELtrddllpcSQCGQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAfLRDA 644
Cdd:TIGR02168 410 ERLEDRRERLQQEI--------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA-LDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 645 QEKHNHelqllqqGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEIS---ALEKRHLSNLDE 721
Cdd:TIGR02168 481 ERELAQ-------LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAieaALGGRLQAVVVE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 722 LESCYVADVQTIRdEHQQALELLRAELEEQLQKKESCHREMLTQelENLKRQHAEELQSVRDSLRMEMSAqhIENGKGPA 801
Cdd:TIGR02168 554 NLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKALSY--LLGGVLVV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 802 ADLQGAHQQdpAMALHNEGHLLVEDGDAVLRSvdaeGLLhqAGPQELGDAHTVEMQKSQAELAkpQELQASQDQVAQVRD 881
Cdd:TIGR02168 629 DDLDNALEL--AKKLRPGYRIVTLDGDLVRPG----GVI--TGGSAKTNSSILERRREIEELE--EKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 882 KVFLLNRELEECRAELEQLQQRRERENQEgttlICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERA 961
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQ----ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 962 GLLLDHEDAADTSDARLAAAAlgdmwsdEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTL-DCEQPIRRVYQSL 1040
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLK-------EELKALREALDELRAELTLLNEEAANLRERLESLERRIaATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1041 STAVEGLLEMAL----------DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTA 1110
Cdd:TIGR02168 848 EELSEDIESLAAeieeleelieELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 1111 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
142-529 |
2.64e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.99 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 142 LQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQ 221
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 222 DWESERELCLENLRQELSLKHQSEMEGLQSQF-QKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA--IKKLQEDLQS 298
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIdEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREktEKLKVEEEKE 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 299 EHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLwSQLESMKTNREELNgswdpvlaqashlEELEHLR 378
Cdd:pfam02463 794 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEEL-ALELKEEQKLEKLA-------------EEELERL 859
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 379 SGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPD 458
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 459 PLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQ-------MKEEFQKKEAEWELSREELKREAEERLASMFLELREKAE 529
Cdd:pfam02463 940 LLLEEADEKEKEENNKEEEEERNKRLLLAKEElgkvnlmAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1130-1546 |
5.51e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 5.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1130 KKEESEQQLILELEDLrKQLQQAARELltlkeEKsvlwnQKETLTNEAK--EREAALQEEVESLTRVQWESRKQSEKDRa 1207
Cdd:TIGR02168 173 RRKETERKLERTRENL-DRLEDILNEL-----ER-----QLKSLERQAEkaERYKELKAELRELELALLVLRLEELREE- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1208 tlLSQMRVLESELEDQlvqhrgCAQLAEEVATLKQQLAALdkhlRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQaa 1287
Cdd:TIGR02168 241 --LEELQEELKEAEEE------LEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANEISRLEQQKQI-- 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1288 rprppgprdsqvelLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKE 1367
Cdd:TIGR02168 307 --------------LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1368 KEILKQENMGDLllttvsrsgldeagcpmlpqgsssrgpeaqpdvtERALLQHENEvVHRRNSEIDELKSLIENLQENQR 1447
Cdd:TIGR02168 373 RLEELEEQLETL----------------------------------RSKVAQLELQ-IASLNNEIERLEARLERLEDRRE 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1448 QLQKDKAEEIEQLHEVIEKLQSElslmgpkvhevsdpQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQ 1527
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQA--------------ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
410
....*....|....*....
gi 1720360658 1528 AHGHSQALEALQQRLQDAE 1546
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1084-1472 |
7.07e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 7.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1084 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLIL-ELEDLRKQLQQAARELLTLKEE 1162
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1163 KsvlwnqkETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVATLKQ 1242
Cdd:TIGR02169 253 L-------EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA----------SLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1243 QLaaldkhlrsqrQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARprppgprdsQVELLQEKLREKLDGFNELVikkdf 1322
Cdd:TIGR02169 316 EL-----------EDAEERLAKLEAEIDKLLAEIEELEREIEEERK---------RRDKLTEEYAELKEELEDLR----- 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1323 adqqlliqeEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQEnmgdlllttvsrsgldeagcpmLPQGSS 1402
Cdd:TIGR02169 371 ---------AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE----------------------ELQRLS 419
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720360658 1403 SRGPEAQPDVTerALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQK------DKAEEIEQLHEVIEKLQSELS 1472
Cdd:TIGR02169 420 EELADLNAAIA--GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKyeqelyDLKEEYDRVEKELSKLQRELA 493
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2065-2591 |
9.82e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 9.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2065 QALSEVTTDKGEKESLETHLTWSEELLRAIQEVFAREQEKAELQprpygsnLGDYNSLVQRLEKVIQEQgDPQKVQDHLC 2144
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA-------QAEEYELLAELARLEQDI-ARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2145 LSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKcIANELQKTLSKEQE 2224
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE-ELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2225 TASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyghvtwsycgtsSASAGRAVLDGKEKELKVVL 2304
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE------------EALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2305 EELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLE-------KQLAQNNQLCVALKHERAAKDNLQKELQIE 2377
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2378 ASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELE 2457
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2458 AMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQ 2537
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 2538 EARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRD------------------------EHKIEQLQRLVREL 2591
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELleeeelleeealeelpeppdleelERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-430 |
2.23e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 156 MLNGRRAQELALLQSRQQcELELLREQhaREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWE---SERELCLE 232
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR-EIEELEEK--IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqiSALRKDLA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 233 NLRQ--ELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEA---QHQAAIKKLQEDLQSEHCQY--LQ 305
Cdd:TIGR02168 737 RLEAevEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELtlLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 306 DLEQKFREKEKAKELELETLQASYEDLKAQS---QEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEELEHLRSGFA 382
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1720360658 383 QQQQQERAQHESELEHLRVYFEkKLKDAEKTYQEDLTVFQQRLQEARE 430
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1302-1594 |
3.54e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1302 LQEKLREKLdgFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMgDLLL 1381
Cdd:COG1196 218 LKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1382 TTVSRSGLDEAgcpmlpqgsssrgpeaqpdvTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLH 1461
Cdd:COG1196 295 AELARLEQDIA--------------------RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1462 EVIEKLQSelslmgpkvhevsdpQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQR 1541
Cdd:COG1196 355 EAEAELAE---------------AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 1542 LQDAEEVAARHLAELEHCVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLE 1594
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
485-1363 |
4.56e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 485 EEKIQQMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSL 564
Cdd:pfam02463 194 ELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 565 MEQQghLRQLEQELTRDDLLPCSQCGQEPAMAQEEKNGALLREKedcaLQLLMAQNRFLEERKEimekfaKEQDAFLRDA 644
Cdd:pfam02463 274 NKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK----LKESEKEKKKAEKELK------KEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 645 QEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELES 724
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 725 CYVADVQTIRDEHQQALELLRAELEEQLQKKEschremLTQELENLKRQHAEELQSVRdslrmemsAQHIENGKGPAADL 804
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEEL------EKQELKLLKDELELKKSEDL--------LKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 805 QGAHQQDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVemqksqAELAKPQELQASQDQVAQVRDKVF 884
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA------VENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 885 llnrELEECRAELEQLQQRRERENQEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLL 964
Cdd:pfam02463 562 ----ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 965 LDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAV 1044
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1045 EGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALEL-HTAKGLLEGFKVEKVD 1123
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEReKTEKLKVEEEKEEKLK 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1124 LQEALGKKEESEQQLILEledlrkQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLtrvqwesrkqSE 1203
Cdd:pfam02463 798 AQEEELRALEEELKEEAE------LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL----------EE 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1204 KDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQ---EIQRLE 1280
Cdd:pfam02463 862 EITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKyeeEPEELL 941
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1281 GQLRQAARPRPPGPRDSQVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKK 1360
Cdd:pfam02463 942 LEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
...
gi 1720360658 1361 SME 1363
Cdd:pfam02463 1022 FLE 1024
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
674-1285 |
7.20e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 7.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 674 HRSELTEQLASSESRRQALlETHVAELQvkhnAEISALEKRHLSNLDELEScyvadvQTIRDEHQQALELLRAELEEQLQ 753
Cdd:COG1196 233 KLRELEAELEELEAELEEL-EAELEELE----AELAELEAELEELRLELEE------LELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 754 KKESCHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHIENgkgpAADLQGAHQQDPAMALHNEGHLLVEDGDAVLRS 833
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 834 VDAEgllhqagpQELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKvflLNRELEECRAELEQLQQRRERENQEGTT 913
Cdd:COG1196 378 EEEL--------EELAEELLEALRAAAELAAQLEELEEAEEALLERLER---LEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 914 LICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAALGDMWSDEGLL 993
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 994 EIDRTLPEGAETSSVCEISSHVCEsffISPENTLDCEQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRcVEREFR 1073
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQN---IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA-IGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1074 HRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAA 1153
Cdd:COG1196 603 LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1154 RELLTLKEEksvlwnQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVqhrgcAQL 1233
Cdd:COG1196 683 ELAERLAEE------ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL-----EEE 751
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1720360658 1234 AEEVATLKQQLAALdkhlrsqrqfmddqaaerehereefQQEIQRLEGQLRQ 1285
Cdd:COG1196 752 ALEELPEPPDLEEL-------------------------ERELERLEREIEA 778
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1055-1577 |
8.73e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.05 E-value: 8.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1055 SKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALElhTAKGLLEGFKVEKVDLQEALGKKEES 1134
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE--TLKKEVKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1135 EQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLT-----------------------NEAKEREAALQEEVESL 1191
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTsllgyfpnkkqledwlhskskeiNQTRDRLAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1192 TRVQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAE 1264
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1265 RE------HEREEFQQEIQRLEGQLRQAARPRPpgprdSQVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLE 1338
Cdd:TIGR00606 676 NQsccpvcQRVFQTEAELQEFISDLQSKLRLAP-----DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELR 750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1339 ETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGPEAQPDVTE-RAL 1417
Cdd:TIGR00606 751 NKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQvNQE 830
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1418 LQHENEVVHRRNSEIDELKSLIENLQENQRQLQKD----KAEEI-------------EQLHEVIEKLQSELSLMGPKVHE 1480
Cdd:TIGR00606 831 KQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKtnelKSEKLqigtnlqrrqqfeEQLVELSTEVQSLIREIKDAKEQ 910
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1481 VSdPQAGSLHSELAclRGEGLGGQALRSELQAAQAAKEVFGQLlaDQAHGHSQALEALQQ-----RLQDAEEVAARHLAE 1555
Cdd:TIGR00606 911 DS-PLETFLEKDQQ--EKEELISSKETSNKKAQDKVNDIKEKV--KNIHGYMKDIENKIQdgkddYLKQKETELNTVNAQ 985
|
570 580
....*....|....*....|..
gi 1720360658 1556 LEHCVALREAEVEAMASQIQEF 1577
Cdd:TIGR00606 986 LEECEKHQEKINEDMRLMRQDI 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2336-2596 |
1.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2336 SRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKE---LQIEASRCEALLAQEKGQLSELQKSLEAERSR----SLE 2408
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEEleqLRKELEELSRQISALRKDLARLEAEVEQLEERiaqlSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2409 LSEALQHERLLTEQLSRNSQEACARQETQVQhaLLRKLKAEKTRALELEAMLEKVQKQAAHTQqqleaqaqercVELRRE 2488
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKEELKALREALDELRAELTLLN-----------EEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2489 KEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKWQRDK--ET 2566
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElsEE 902
|
250 260 270
....*....|....*....|....*....|
gi 1720360658 2567 LRELEIQRQRDEHKIEQLQRLVRELRWKEE 2596
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1074-1282 |
1.44e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1074 HRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKvdLQEALGKKEESEQQLILELEDLRKQLQQAA 1153
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWF--AQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1154 RELLTLKEEKSVLwnqKETLTNEAKEREAALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESEL---EDQLVQHRgc 1230
Cdd:COG4913 316 ARLDALREELDEL---EAQIRGNGGDRLEQLEREIERLER----ELEERERRRARLEALLAALGLPLpasAEEFAALR-- 386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1720360658 1231 AQLAEEVATLKQQLAALDKHLRSQRqfmdDQAAEREHEREEFQQEIQRLEGQ 1282
Cdd:COG4913 387 AEAAALLEALEEELEALEEALAEAE----AALRDLRRELRELEAEIASLERR 434
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
117-577 |
4.35e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 117 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELLREQHAREKEEMALRSGQ 196
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 197 EAAELKEKLrsemEKNAQTIETLKQdWESErelcLENLRQELSL---KHQSEMEGLQSQFQKELSEQKVELEKIFQAKHE 273
Cdd:pfam12128 331 HGAFLDADI----ETAAADQEQLPS-WQSE----LENLEERLKAltgKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 274 AEVSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDL-EQKFREKEKAKELELETLQASY-EDLK---AQSQEEIRLLWSQLE 348
Cdd:pfam12128 402 IREARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 349 SMKTNREELNGSwdpvLAQASHLEELEHLRSGFAQQQQQERAQHESELEH--------LRVYFEK----------KLKDA 410
Cdd:pfam12128 482 AANAEVERLQSE----LRQARKRRDQASEALRQASRRLEERQSALDELELqlfpqagtLLHFLRKeapdweqsigKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 411 EKTYQEDLTVFQQRLQEAREDS-------LESTEISSSCVLPEETSGREGKeppdpldlqlgqpkvQESLVEDCQVKLSK 483
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSVGGELNlygvkldLKRIDVPEWAASEEELRERLDK---------------AEEALQSAREKQAA 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 484 AEEKIQQMKEEFQKKEAEWELSREELKrEAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERS 563
Cdd:pfam12128 623 AEEQLVQANGELEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAW 701
|
490
....*....|....
gi 1720360658 564 LMEQQGHLRQLEQE 577
Cdd:pfam12128 702 LEEQKEQKREARTE 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
145-519 |
4.39e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 145 EKETALTELREMlnGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWE 224
Cdd:TIGR02169 171 KKEKALEELEEV--EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 225 SEREL---------------CLENLRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAI 289
Cdd:TIGR02169 249 LEEELeklteeiselekrleEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 290 KKLQEdLQSEHCQYLQDLEQKFREKEKAKElELETLQASYEDLKAQSQE---EIRLLWSQLESMKTNREELNGSWDPVLA 366
Cdd:TIGR02169 329 AEIDK-LLAEIEELEREIEEERKRRDKLTE-EYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 367 QASHLEELEHLRSGfaqqqqqERAQHESELEHLRvyfekklkdaektyqEDLTVFQQRLQEAREdslestEIssscvlpe 446
Cdd:TIGR02169 407 ELDRLQEELQRLSE-------ELADLNAAIAGIE---------------AKINELEEEKEDKAL------EI-------- 450
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 447 etsgregkeppdpldlqlgqpKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEERLAS 519
Cdd:TIGR02169 451 ---------------------KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
119-357 |
1.22e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.89 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 119 ELEALRLSLNNMHTAQLELTQANLQKEKETALTEL---REMLNGRRAQelallqsrqqcELELLREQHAREKEEMalRSG 195
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQ-----------ELEAARKVKILEEERQ--RKI 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 196 QEAAELKEKLRSEMEkNAQTIETLKQDWESERElcLENLRQElSLKHQSEMEGLQSQfQKELSEQKVELEKIFQAKHEAE 275
Cdd:pfam17380 416 QQQKVEMEQIRAEQE-EARQREVRRLEEERARE--MERVRLE-EQERQQQVERLRQQ-EEERKRKKLELEKEKRDRKRAE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 276 -----VSLKNLEAQHQAAI------KKLQEDLQSEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEirllw 344
Cdd:pfam17380 491 eqrrkILEKELEERKQAMIeeerkrKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER----- 565
|
250
....*....|...
gi 1720360658 345 SQLESMKTNREEL 357
Cdd:pfam17380 566 SRLEAMEREREMM 578
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
134-501 |
1.81e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 134 QLELTQANLQKeKETALTELREMLNGRRAQ-ELAllqsrqqcelELLREQHAREKE---EMALRSGQEAAELKEKLRSEM 209
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQaEKA----------ERYKELKAELRElelALLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 210 EKNAQTIETLkQDWESERELCLENLRQElslkhQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAI 289
Cdd:TIGR02168 249 KEAEEELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 290 KKLQEDLQSEHCQylqdleqkfREKEKAKELELETLQASYEDLKAQSQEEIRllwsQLESMKTNREELNgswdpvlaqas 369
Cdd:TIGR02168 323 AQLEELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE----------- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 370 hlEELEHLRSGFAqQQQQERAQHESELEHLrvyfEKKLKDAEKTYQEdltvfQQRLQEAREDSLESTEIssscvlpEETS 449
Cdd:TIGR02168 379 --EQLETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL-------KELQ 439
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1720360658 450 GREGKEPPDPLDLQLGQPKVQESLvEDCQVKLSKAEEKIQQMKEEFQKKEAE 501
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEAL-EELREELEEAEQALDAAERELAQLQAR 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1142-1354 |
1.90e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1142 LEDLRKQLQQAARELLTLKEEKSVLWNQKETLTneakEREAALQEevesLTRVQWEsrkqsEKDRATLLSQMRVLESELE 1221
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQ----ERREALQR----LAEYSWD-----EIDVASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1222 DQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRdsqvEL 1301
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKG----EIGRLEKELEQAEEELDELQDRLEAAEDLARLELR----AL 750
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 1302 LQEKLREKLDGFNELVIKKDFADQqlliQEEEIKRLEETNASIQRQMVQLQEE 1354
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEER----IDALRARLNRAEEELERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2359-2592 |
2.39e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2359 ALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEacarqetqv 2438
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE--------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2439 QHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELgcclQRERE 2518
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL----AALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720360658 2519 KAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKwQRDKETLRELEIQRQRDEHKIEQLQRLVRELR 2592
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL-AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
144-542 |
2.76e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 144 KEKETALTELREMLNG--RRAQELALLQSR-QQCELELLREQHAREKEEMALRSGQEAAELKEKLRSEMEKNAQTIETLK 220
Cdd:PRK03918 210 NEISSELPELREELEKleKEVKELEELKEEiEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 221 QDWESERELC---------LENLRQELSlKHQSEMEGLQSQFqKELSEQKVELEKIFQAKHEAEVSLKNLEAQHqaaikK 291
Cdd:PRK03918 290 EKAEEYIKLSefyeeyldeLREIEKRLS-RLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERH-----E 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 292 LQEDLqsehcqyLQDLEQKFREKEKAKELELETLQASYEDL---KAQSQEEIRLLWSQLESMKTNREELNgswdpvlaqa 368
Cdd:PRK03918 363 LYEEA-------KAKKEELERLKKRLTGLTPEKLEKELEELekaKEEIEEEISKITARIGELKKEIKELK---------- 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 369 shlEELEHLRSGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREdsLESTEISSSCVLPEET 448
Cdd:PRK03918 426 ---KAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE--LEKVLKKESELIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 449 SGREGKEppdpldlqlgqpkVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAE--ERLASMFLELRE 526
Cdd:PRK03918 501 LAEQLKE-------------LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkKKLAELEKKLDE 567
|
410
....*....|....*.
gi 1720360658 527 kAESEKLSIISRFEHR 542
Cdd:PRK03918 568 -LEEELAELLKELEEL 582
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
116-798 |
2.81e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 116 HSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSG 195
Cdd:pfam02463 193 EELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 196 QEAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKElsEQKVELEKIFQAKHEAE 275
Cdd:pfam02463 273 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE--KEEIEELEKELKELEIK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 276 VSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDLEQKFREKEKAKELELEtlqasYEDLKAQSQEEIRLLWSQLESMKTNRE 355
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-----LKSEEEKEAQLLLELARQLEDLLKEEK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 356 ElngswdpvlAQASHLEELEHLRsGFAQQQQQERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLES 435
Cdd:pfam02463 426 K---------EELEILEEEEESI-ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 436 TEISSSCVLPEETSGREGKEPPDPLDLQLGQ---------PKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSR 506
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISahgrlgdlgVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 507 EELKREAEERLASMFLELREKAESEKLSIISRFEHRE-SSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLLP 585
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATlEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 586 CSQCGQEPAMAQ--EEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQL 663
Cdd:pfam02463 656 EGLAEKSEVKASlsELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 664 LALRmELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELESCYVADVQTIRDEHQQALEL 743
Cdd:pfam02463 736 EELK-LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720360658 744 LRAELEEQLQKKESCHREMLTQELENLK--RQHAEELQSVRDSLRMEMSAQHIENGK 798
Cdd:pfam02463 815 ELLEEEQLLIEQEEKIKEEELEELALELkeEQKLEKLAEEELERLEEEITKEELLQE 871
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2212-2597 |
3.42e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2212 ANELQKtlSKEQETASDVRK----RLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLR---LRYGHVTWSYCGTS 2284
Cdd:PTZ00121 1184 AEEVRK--AEELRKAEDARKaeaaRKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaeeERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2285 SASAGRAVLDGKEKELKVVlEELE--SERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLcvALKH 2362
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKA-DELKkaEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKA 1338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2363 ERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSealQHERLLTEQLSRNSQEACARQETqvqhal 2442
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK---AEEKKKADEAKKKAEEDKKKADE------ 1409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2443 LRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRthKQELGCCLQREREKAAW 2522
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--KADEAKKKAEEAKKADE 1487
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720360658 2523 LQAELEQlsARVKEQEARKDArrmERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEV 2597
Cdd:PTZ00121 1488 AKKKAEE--AKKKADEAKKAA---EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1141-1368 |
4.93e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 4.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1141 ELEDLRKQLQQAARELLTLKEEKSVLwnqkeTLTNEAKEREAALQEEVESLTRVQweSRKQSEKDRATLLSQMRVLESEL 1220
Cdd:COG3206 183 QLPELRKELEEAEAALEEFRQKNGLV-----DLSEEAKLLLQQLSELESQLAEAR--AELAEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1221 EDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMddqaaereherEEFQQEIQRLEGQLRQAARpRPPGPRDSQVE 1300
Cdd:COG3206 256 LPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDV-----------IALRAQIAALRAQLQQEAQ-RILASLEAELE 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 1301 LLQEKLREkldgfnelvikkdfADQQLLIQEEEIKRLeetnASIQRQMVQLQEELEKQKKSMEELKEK 1368
Cdd:COG3206 324 ALQAREAS--------------LQAQLAQLEARLAEL----PELEAELRRLEREVEVARELYESLLQR 373
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1053-1369 |
5.25e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1053 DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQ-KQQELLERLREESAAKDRLALELHTAKgllEGFKVEKVDLQEALGKK 1131
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1132 EESEQqliLELEDLRKQLQQ--AARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSE-KDRAT 1208
Cdd:PTZ00121 1602 EEEKK---MKAEEAKKAEEAkiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1209 LLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQ---RQFMDDQAAEREHEREEFQQEIQRLEG---- 1281
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAeeeNKIKAEEAKKEAEEDKKKAEEAKKDEEekkk 1758
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1282 --QLRQAARPRPPGPRDSQVELLQEKLREKLDGFNELVIK--KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEK 1357
Cdd:PTZ00121 1759 iaHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKkiKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADS 1838
|
330
....*....|..
gi 1720360658 1358 QKKSMEELKEKE 1369
Cdd:PTZ00121 1839 KNMQLEEADAFE 1850
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
203-532 |
5.65e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 48.86 E-value: 5.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 203 EKLRSEMEKNAQT--------IETLKQDWESERELCLENLRQELSLKHQSEMEGLQSQFQKELSEQKvelekifqaKHEA 274
Cdd:NF033838 72 SEIQKSLDKRKHTqnvalnkkLSDIKTEYLYELNVLKEKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 275 EVSLKNLEAQHQAAIKKlQEDLQSEHCQYLQDLEQKFREKE-KAKELELETLQAsyEDLKAQSQEEIRLLWSQLESMKtn 353
Cdd:NF033838 143 EATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEIAESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK-- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 354 reelngswdpvlAQASHLEELEHLRsgfaqqqqqERAQHESELEHLRVYFEKKLKDAEKTYQEDLTVFQQR--LQE-ARE 430
Cdd:NF033838 218 ------------AEATRLEKIKTDR---------EKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRgvLGEpATP 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 431 DSLESTEISSSCVLPEETsgregkePPDPlDLQLGQpKVQESlvedcQVKLSKAEEKIQQMKEEFQK------------- 497
Cdd:NF033838 277 DKKENDAKSSDSSVGEET-------LPSP-SLKPEK-KVAEA-----EKKVEEAKKKAKDQKEEDRRnyptntyktlele 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720360658 498 --------KEAEWELSREELKR-EAEERLAsmflELREKAESEK 532
Cdd:NF033838 343 iaesdvkvKEAELELVKEEAKEpRNEEKIK----QAKAKVESKK 382
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1034-1469 |
5.81e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1034 RRVYQSLSTAVEGLL-EMALDS--SKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTA 1110
Cdd:PRK02224 285 RERLEELEEERDDLLaEAGLDDadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1111 KGLLEGfkvEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVES 1190
Cdd:PRK02224 365 AAELES---ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1191 LTRVQW------------------------ESRKQSEKDRAtLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAA 1246
Cdd:PRK02224 442 VEEAEAlleagkcpecgqpvegsphvetieEDRERVEELEA-ELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERRED 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1247 LDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprppgprdsQVELLQEKLREKLDGFNELVIKKDFADQQ 1326
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA----------EAEEEAEEAREEVAELNSKLAELKERIES 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1327 LLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQEnmgdlLLTTVSRSGLDEAgcpmlpQGSSSRGP 1406
Cdd:PRK02224 591 LERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE-----LEAEFDEARIEEA------REDKERAE 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720360658 1407 EAQPDVTE--RALLQHENEVVHRRNSEIDELKSLiENLQENQRQLQkDKAEEIEQLHEVIEKLQS 1469
Cdd:PRK02224 660 EYLEQVEEklDELREERDDLQAEIGAVENELEEL-EELRERREALE-NRVEALEALYDEAEELES 722
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
242-914 |
8.83e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 242 HQSEMEGLQ---SQFQKELSEQKVELEKIFQAKHEAEVSLKNL------EAQHQAAIKKLQEDLQSEHCQYLQDLeQKFR 312
Cdd:PTZ00121 1065 HVGQDEGLKpsyKDFDFDAKEDNRADEATEEAFGKAEEAKKTEtgkaeeARKAEEAKKKAEDARKAEEARKAEDA-RKAE 1143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 313 EKEKAKELELETLQASYEDlkAQSQEEIRLLWSQLESMKTNREElngswdpVLAQASHLEELEHLRsgfaQQQQQERAQH 392
Cdd:PTZ00121 1144 EARKAEDAKRVEIARKAED--ARKAEEARKAEDAKKAEAARKAE-------EVRKAEELRKAEDAR----KAEAARKAEE 1210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 393 ESELEHLRVYFEKKLKDAEKtyqedltvfqqRLQEAREDSLEST---EISSSCVLPEETSGREGKEPPDPLDLQLGQPKV 469
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVK-----------KAEEAKKDAEEAKkaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 470 QESLVEDCQVK----LSKAEEKiqqMKEEFQKKEAEWELSREELKREAEERLASMfLELREKAESEKLSIISRFEHRESS 545
Cdd:PTZ00121 1280 ADELKKAEEKKkadeAKKAEEK---KKADEAKKKAEEAKKADEAKKKAEEAKKKA-DAAKKKAEEAKKAAEAAKAEAEAA 1355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 546 MRHLQ-DQQAAQILDLERSLMEQQGH-LRQLEQELTRDDLLPcSQCGQEPAMAQEEKNGALLREKEDcALQLLMAQNRFL 623
Cdd:PTZ00121 1356 ADEAEaAEEKAEAAEKKKEEAKKKADaAKKKAEEKKKADEAK-KKAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKA 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 624 EERKEIMEKfAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASsESRRQALLETHVAELQVK 703
Cdd:PTZ00121 1434 DEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE-EAKKKADEAKKAAEAKKK 1511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 704 HNAEISALEKRHLSNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKKESCHREMLTQELENLKRQHAEELQSVRD 783
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 784 SLRMEMSAQHIENGKGPAADLQGAHQ-QDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAE 862
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEaKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1720360658 863 LAKPQELQASQDQVAQvRDKVFLLNRELEECRaELEQLQQRRERENQEGTTL 914
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDE-KKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEEL 1721
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2296-2598 |
1.05e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2296 KEKELKVVLEELESERgkgqALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVA-LKHERAAKDNLQKEL 2374
Cdd:pfam02463 171 KKEALKKLIEETENLA----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2375 QIEASRCEALLAQEKGQLSELQKSLEAERSRslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRAL 2454
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2455 ELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARV 2534
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720360658 2535 KEQEARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEVS 2598
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
203-319 |
1.17e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 47.90 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 203 EKLRSEMEKNAQTIETLKQDweserelcLENLRQELSLKhqseMEGLQSQFQKELSEQKVEL-EKIFQAKHEAEVSLKNL 281
Cdd:PRK00409 526 EELERELEQKAEEAEALLKE--------AEKLKEELEEK----KEKLQEEEDKLLEEAEKEAqQAIKEAKKEADEIIKEL 593
|
90 100 110
....*....|....*....|....*....|....*....
gi 1720360658 282 EAQHQAAIKKLQE-DLQSEHCQYLQDLEQKFREKEKAKE 319
Cdd:PRK00409 594 RQLQKGGYASVKAhELIEARKRLNKANEKKEKKKKKQKE 632
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1070-1374 |
1.20e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1070 REFRHRNEEMAQAMQKQQELLERLREesaakdrLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQL 1149
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIID-------LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1150 QQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLE---SELEDQLVQ 1226
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLErrkVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1227 HRGCAQLAEEVATLKQQLAALDKHL-------RSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAarprppgpRDSQV 1299
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKElkeleikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER--------LSSAA 390
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720360658 1300 ELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE 1374
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
846-1577 |
1.27e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 846 QELGDAHTVEMQKSQAELAKPQ-ELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEgttlICMLRADLEL 924
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRlEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ----LEELEAQLEE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 925 AQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARL--AAAALGDMWSDEGLLEIDRTLPEG 1002
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLetLRSKVAQLELQIASLNNEIERLEA 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1003 AETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQA 1082
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1083 MQKQ---QELLERLREESAAKDRLALELHTAKG----LLEGFKVEK---VDLQEALGkkeESEQQLILELEDLRKQLQQA 1152
Cdd:TIGR02168 488 QARLdslERLQENLEGFSEGVKALLKNQSGLSGilgvLSELISVDEgyeAAIEAALG---GRLQAVVVENLNAAKKAIAF 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1153 ARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLES-------------- 1218
Cdd:TIGR02168 565 LKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDldnalelakklrpg 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1219 ----ELEDQLVQHRGC-------------------AQLAEEVATLKQQLAALDKHL---RSQRQFMDDQAAEREHEREEF 1272
Cdd:TIGR02168 645 yrivTLDGDLVRPGGVitggsaktnssilerrreiEELEEKIEELEEKIAELEKALaelRKELEELEEELEQLRKELEEL 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1273 QQEIQRLEGQLRQAARPRppGPRDSQVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQ 1352
Cdd:TIGR02168 725 SRQISALRKDLARLEAEV--EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1353 EELEKQKKSMEELKEKEILKQENMGDLLLTTVSRsgldeagcpmlpqgsssrgpEAQPDVTERALLQhENEVVHRRNSEI 1432
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAAT--------------------ERRLEDLEEQIEE-LSEDIESLAAEI 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1433 DELKSLIENLQENQRQLQKDKAEEIEQLHEviekLQSELSLMGPKVHEVSDpQAGSLHSELaclrgeglggQALRSELQA 1512
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALAL----LRSELEELSEELRELES-KRSELRREL----------EELREKLAQ 926
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720360658 1513 AQAAKEVFGQLLAdqahghsQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMASQIQEF 1577
Cdd:TIGR02168 927 LELRLEGLEVRID-------NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2283-2540 |
1.47e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2283 TSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRyLQREGQSSRALEELKLSLEKQLAQNNQLCVALKH 2362
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2363 ERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACAR-QETQVQHA 2441
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRlEDLEEQIE 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2442 LLRKLKAEKTRALE-LEAMLEKVQKQAAHTQQQLEAQAQERcVELRREKEvsgNLRSAVDALRTHKQELGCCLQREREKA 2520
Cdd:TIGR02168 849 ELSEDIESLAAEIEeLEELIEELESELEALLNERASLEEAL-ALLRSELE---ELSEELRELESKRSELRRELEELREKL 924
|
250 260
....*....|....*....|
gi 1720360658 2521 AWLQAELEQLSARVKEQEAR 2540
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQER 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
136-409 |
1.50e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 136 ELTQANLQKEKEtaltELREMLNGRRAQELALLQSRQQCELELLREQHAREKEE--MALRSGQEAAELKEKLRSEMEKNA 213
Cdd:PTZ00121 1526 EAKKAEEAKKAD----EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKAEEAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 214 QTIETLKQDWESERElclENLRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQ 293
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAE---EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 294 EDLQSEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEE 373
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1720360658 374 LEHLRSGFAQQQQQERAQHES--------ELEHLRVYFEKKLKD 409
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIRKEKEAvieeeldeEDEKRRMEVDKKIKD 1802
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1069-1367 |
1.56e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1069 EREFRHRNEEMAQAMQKQQELLERLREEsaakdrlaleLHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQ 1148
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1149 LQQAarelltLKEEKSVLWNQKETLTNEAKEREAALQEEVEsltrvqwESRKQSEKDRATLLSQMRVLESELEDQLvqhr 1228
Cdd:pfam12128 669 KNKA------LAERKDSANERLNSLEAQLKQLDKKHQAWLE-------EQKEQKREARTEKQAYWQVVEGALDAQL---- 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1229 gcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPR-----DSQVELLQ 1303
Cdd:pfam12128 732 --ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyQETWLQRR 809
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 1304 EKLREKLDGFNELVIKkdfADQQLLIQEEEIKR----LEETNASIQRQMVQLQEELEKQKKSMEELKE 1367
Cdd:pfam12128 810 PRLATQLSNIERAISE---LQQQLARLIADTKLrrakLEMERKASEKQQVRLSENLRGLRCEMSKLAT 874
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
119-722 |
1.69e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 119 ELEALRLSLNNMHTAQLELT---------QANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEE 189
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQkelyalaneISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 190 MALRSGQEAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQELSL-KHQSEMEGLQSQFQKELSEQKVELEKIF 268
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLnNEIERLEARLERLEDRRERLQQEIEELL 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 269 QAKHEAEVSLKNLE-AQHQAAIKKLQEDLQSEHCQY--LQDLEQKFREKEKAKELELETLQASYEDLKAQsQEEIRLLWS 345
Cdd:TIGR02168 428 KKLEEAELKELQAElEELEEELEELQEELERLEEALeeLREELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 346 QLESMKTNREELNGSWDPVLAQ---------------------------------ASHLEELEHLRSGFAQQQQQERAQH 392
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELisvdegyeaaieaalggrlqavvvenlnaakkaIAFLKQNELGRVTFLPLDSIKGTEI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 393 ESELEHLR-------------VYFEKKLKDAeKTYQEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREG-----K 454
Cdd:TIGR02168 587 QGNDREILkniegflgvakdlVKFDPKLRKA-LSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGvitggS 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 455 EPPDPLDLQLGQP--------KVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWE------------LSREELKREAE 514
Cdd:TIGR02168 666 AKTNSSILERRREieeleekiEELEEKIAELEKALAELRKELEELEEELEQLRKELEelsrqisalrkdLARLEAEVEQL 745
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 515 E----RLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQaAQILDLERSLMEQQGHLRQLEQELTRDdllpcsqcg 590
Cdd:TIGR02168 746 EeriaQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE-AQIEQLKEELKALREALDELRAELTLL--------- 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 591 QEPAMAQEEKNGALLREKEDCALQLLMAQNRfLEERKEIMEKFAKEQDAfLRDAQEKhnHELQLLQQGHQQQLLALRMEL 670
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEE-LEELIEE--LESELEALLNERASLEEALAL 891
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1720360658 671 ETKHRSELTEQLASSESRRQALLE--THVAELQVKHNAEISALEKRHLSNLDEL 722
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRelEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1125-1380 |
1.70e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 47.26 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1125 QEALGKKEESEQQLILELEDLRKQLQQAARELL----TLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWEsrk 1200
Cdd:COG5185 267 LEKLGENAESSKRLNENANNLIKQFENTKEKIAeytkSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTA--- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1201 QSEKDRATLLSQMRVLESELEdQLVQHRGCAQLAEEVATLKQQLAALDKHL----RSQRQFMDDQAAEREHEREEFQQEI 1276
Cdd:COG5185 344 EIEQGQESLTENLEAIKEEIE-NIVGEVELSKSSEELDSFKDTIESTKESLdeipQNQRGYAQEILATLEDTLKAADRQI 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1277 QRLEGQLRQAarprppgprDSQVELLQEKLREKLDGFNELVIKKDFADQQLLIQE--EEIKRLEETNASIQRQMVQLQEE 1354
Cdd:COG5185 423 EELQRQIEQA---------TSSNEEVSKLLNELISELNKVMREADEESQSRLEEAydEINRSVRSKKEDLNEELTQIESR 493
|
250 260
....*....|....*....|....*.
gi 1720360658 1355 LEKQKKSMEELKEKEILKQENMGDLL 1380
Cdd:COG5185 494 VSTLKATLEKLRAKLERQLEGVRSKL 519
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
199-969 |
1.76e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 199 AELKEKLRSEMEKNAQTIETLKQDWESERELCLEnlRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSL 278
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQ--ELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 279 KNLEAQHQAAIKKLQEDLQSEhcQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESmktNREELN 358
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD---DEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 359 GSWDPVLAQASHLEELEHLRSGFAQQQQQERAQHESELEhlRVYFEKKLKDAEKTYQEDLTVFQQRLQEAREDSLESTEI 438
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 439 SSSCVLPEETSGREGKEPPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEA--EWELSREELKREAEER 516
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQElkLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 517 LASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLE-RSLMEQQGHLRQLEQELTRDDLLPCSQCGQEPAM 595
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVgGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 596 AQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKhNHELQLLQQGHQQQLLALRMELETKHR 675
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ-LDKATLEADEDDKRAKVVEGILKDTEL 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 676 SELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKK 755
Cdd:pfam02463 635 TKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKK 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 756 ESCHRE----MLTQELENLKRQHAEELQSVRDSLRMEMSAQHIENGKGPAADLQGAHQQDPA--MALHNEGHLLVEDGDA 829
Cdd:pfam02463 715 LKLEAEellaDRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELaeEREKTEKLKVEEEKEE 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 830 VLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKVFLLNRE-LEECRAELEQLQQRREREN 908
Cdd:pfam02463 795 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEeLERLEEEITKEELLQELLL 874
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720360658 909 QEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHED 969
Cdd:pfam02463 875 KEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1141-1358 |
2.47e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1141 ELEDLRKQ------LQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMR 1214
Cdd:COG4913 243 ALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1215 VLESELEDQLVQHRG--CAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprpp 1292
Cdd:COG4913 323 EELDELEAQIRGNGGdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALE----- 397
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720360658 1293 gprdSQVELLQEKLREKLDGFNELvikkdfaDQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQ 1358
Cdd:COG4913 398 ----EELEALEEALAEAEAALRDL-------RRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1031-1361 |
3.00e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1031 QPIRRVYQSLSTAVEGLLEMALDSS--KQLEEARQLHRCVEREFrhrnEEMAQAMQKQQELLERLREESAAKDRLALELH 1108
Cdd:COG3096 809 QKLQRLHQAFSQFVGGHLAVAFAPDpeAELAALRQRRSELEREL----AQHRAQEQQLRQQLDQLKEQLQLLNKLLPQAN 884
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1109 TakgLLEGFKVEKVD-LQEALGKKEESEQQL------ILELEDLRKQLQ-------QAARELLTLKEEKSVLWNQKETLT 1174
Cdd:COG3096 885 L---LADETLADRLEeLREELDAAQEAQAFIqqhgkaLAQLEPLVAVLQsdpeqfeQLQADYLQAKEQQRRLKQQIFALS 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1175 NEAKEREA-ALQEEVESLTrvqwESRKQSEKDRAtllsQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRS 1253
Cdd:COG3096 962 EVVQRRPHfSYEDAVGLLG----ENSDLNEKLRA----RLEQAEEARREAREQLR---QAQAQYSQYNQVLASLKSSRDA 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1254 QRQFMDDqaaerehereeFQQEIQRLEGQLRQAARPRPPGPRDSqvelLQEKLREKLDGFNELvikkdfaDQQLLIQEEE 1333
Cdd:COG3096 1031 KQQTLQE-----------LEQELEELGVQADAEAEERARIRRDE----LHEELSQNRSRRSQL-------EKQLTRCEAE 1088
|
330 340
....*....|....*....|....*...
gi 1720360658 1334 IKRLEETNASIQRQMVQLQEELEKQKKS 1361
Cdd:COG3096 1089 MDSLQKRLRKAERDYKQEREQVVQAKAG 1116
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
139-583 |
4.41e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 4.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 139 QANLQKEKETALTELREMLNGRRAQELALLQSRQQCE----------LELLREQHAREKEEMALRSGQEAAELKEKLRSE 208
Cdd:TIGR00618 450 TAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETrkkavvlarlLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 209 MEKNAQTIETLKQDWESERELCLENLRQELSLKHQseMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA 288
Cdd:TIGR00618 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 289 IKKLQED----LQSEHCQYLQDLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELNGSwdpv 364
Cdd:TIGR00618 608 DMLACEQhallRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQ---- 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 365 lAQASHLEELEHLRSGFAQQQQQERAQHESELEHLRVYFE--KKLKDAEKTYQEDLTVFQQRLQEAREDSLEsteisssc 442
Cdd:TIGR00618 684 -KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEieNASSSLGSDLAAREDALNQSLKELMHQART-------- 754
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 443 VLPEETSGREGKEPPDPLDLQLGQPkvQESLVEDCQVKLSKAEEKIQQMKE---EFQKKEAEWELSREELKREAEERLAS 519
Cdd:TIGR00618 755 VLKARTEAHFNNNEEVTAALQTGAE--LSHLAAEIQFFNRLREEDTHLLKTleaEIGQEIPSDEDILNLQCETLVQEEEQ 832
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720360658 520 MFLELREKAESEkLSIISRFEHRESSMRHLQD--QQAAQILDLERSL--------MEQQGHLRQLEQELTRDDL 583
Cdd:TIGR00618 833 FLSRLEEKSATL-GEITHQLLKYEECSKQLAQltQEQAKIIQLSDKLnginqikiQFDGDALIKFLHEITLYAN 905
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
134-358 |
5.32e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 5.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 134 QLELTQANlqkekeTALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEmalrsgqeaaelKEKLRSEMEKNA 213
Cdd:TIGR04523 273 QKELEQNN------KKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK------------LEEIQNQISQNN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 214 QTIETLKQDweserelcLENLRQELSlkhqsEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQ 293
Cdd:TIGR04523 335 KIISQLNEQ--------ISQLKKELT-----NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQ 401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720360658 294 EDlqsehcqylQDLEQKFREKEKAKELELETLQASYEDLKAQ---SQEEIRLLWSQLESMKTNREELN 358
Cdd:TIGR04523 402 NQ---------EKLNQQKDEQIKKLQQEKELLEKEIERLKETiikNNSEIKDLTNQDSVKELIIKNLD 460
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1056-1471 |
5.88e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1056 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLA-----LELHTAKGLLEGFKVEKVDLQEALGK 1130
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgreLTEEHRKELLEEYTAELKRIEKELKE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1131 KEESEQQLILELEDLRKQLQQAaRELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLtrvqwesrkqsEKDRATLL 1210
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKE-SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKL-----------KEKLIKLK 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1211 SQMRVLESELEdqlvqhrgcaqlaeEVATLKQQLAALDKHLRSqrqfmddqaaerehereeFQQEIQRLEGQLRQAARpr 1290
Cdd:PRK03918 539 GEIKSLKKELE--------------KLEELKKKLAELEKKLDE------------------LEEELAELLKELEELGF-- 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1291 ppgprdSQVELLQEKLREKLDGFNELVIKKDfADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEK-E 1369
Cdd:PRK03918 585 ------ESVEELEERLKELEPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKyS 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1370 ILKQENMGDLLLTTVSR-SGLDEagcpmlpqgsSSRGPEAQPDVTERAL--LQHENEVVHRRNSEIDELKSLIENLQENQ 1446
Cdd:PRK03918 658 EEEYEELREEYLELSRElAGLRA----------ELEELEKRREEIKKTLekLKEELEEREKAKKELEKLEKALERVEELR 727
|
410 420
....*....|....*....|....*
gi 1720360658 1447 RQLQKDKAEEIEQLHEVIEKLQSEL 1471
Cdd:PRK03918 728 EKVKKYKALLKERALSKVGEIASEI 752
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2116-2428 |
6.14e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2116 LGDYNSLVQRLEKVIQEQGDPQKVQDHLclsdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLR 2195
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEEL-----TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2196 RQVELLAYKVEQEKCIANELQKTLSKEQETA---SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLR 2272
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2273 yghvtwsyCGTSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREgqSSRALEELKLSLEKQLAQ 2352
Cdd:TIGR02168 386 --------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720360658 2353 NNQLCVALKHERAAKDNLQKELQIEASRcealLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQ 2428
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1091-1288 |
6.28e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1091 ERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQK 1170
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1171 ETLTNEAKEREAALQ-----EEVESLtrVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLA 1245
Cdd:COG4942 100 EAQKEELAELLRALYrlgrqPPLALL--LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1720360658 1246 ALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAAR 1288
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1084-1470 |
7.59e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1084 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 1163
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1164 SVLW------------NQKETLTNEAKEREAA---LQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEDQLVQHr 1228
Cdd:TIGR04523 305 EQDWnkelkselknqeKKLEEIQNQISQNNKIisqLNEQISQLKK----ELTNSESENSEKQRELEEKQNEIEKLKKEN- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1229 gcAQLAEEVATLKQQLAALDKHLRSQR---QFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprppgprdSQVELLQEK 1305
Cdd:TIGR04523 380 --QSYKQEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQEKELLEKEIERLKETIIKNN---------SEIKDLTNQ 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1306 LREKLDGFNELVIKKDfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLlttvs 1385
Cdd:TIGR04523 449 DSVKELIIKNLDNTRE-------SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLT----- 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1386 rsgldeagcpmlPQGSSSRgpeaqpdVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKD-KAEEIEQLHEVI 1464
Cdd:TIGR04523 517 ------------KKISSLK-------EKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDeKNKEIEELKQTQ 577
|
....*.
gi 1720360658 1465 EKLQSE 1470
Cdd:TIGR04523 578 KSLKKK 583
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2184-2555 |
9.19e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 9.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2184 EARGSQREHQLRRQVELLAYKVEQEKcIANELQKTlSKEQETASDVRKRLVVEQNAVQDLKSELHAcKQENTSLLESLDK 2263
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKK-AEEAKKADEAKKKAEEAKKKADEAKKAAEA-KKKADEAKKAEEA 1521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2264 VQQEVLRlryghvtwsycgtsSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELK 2343
Cdd:PTZ00121 1522 KKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2344 LSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALlAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQL 2423
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2424 SRN-------SQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSgnlR 2496
Cdd:PTZ00121 1667 AKKaeedkkkAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED---K 1743
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2497 SAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKD-ARRMERRSSRADL 2555
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDeKRRMEVDKKIKDI 1803
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
152-940 |
9.35e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 9.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 152 ELREMLNGRRAQELALLQSRQQcELELLREQHArekeEMALRSGQEAAELKEKLRSEMEKnAQTIETLKQDWESERELCL 231
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKLQ-EMQMERDAMA----DIRRRESQSQEDLRNQLQNTVHE-LEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 232 ENLRQeLSLKHQSEMEGLQSQFqkeLSEQKVELEKIFQAKHEAEVSLKNLeaqhQAAIKKLQEDLQSEhCQYLQ------ 305
Cdd:pfam15921 173 EQLRK-MMLSHEGVLQEIRSIL---VDFEEASGKKIYEHDSMSTMHFRSL----GSAISKILRELDTE-ISYLKgrifpv 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 306 --DLEQKFREKEKAKELELETLQASYEDLKAQSQEEIRLLWSQLESMKTNREELNGSWDPVLAQAS--------HLEELE 375
Cdd:pfam15921 244 edQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARnqnsmymrQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 376 HLRSgfaqqqqqeraQHESELEHLRVYFEKKLKDAEKtyqeDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKE 455
Cdd:pfam15921 324 STVS-----------QLRSELREAKRMYEDKIEELEK----QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 456 PPDPLDLQLGQPKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEERLASmfleLREKAES-EKLS 534
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAA----IQGKNESlEKVS 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 535 -IISRFEHRESSMRHLQDQQAAQILDLERSlmeqqghlrqleqELTRDDLlpcSQCGQEPAMAQEEKNGAL--LREKEDC 611
Cdd:pfam15921 465 sLTAQLESTKEMLRKVVEELTAKKMTLESS-------------ERTVSDL---TASLQEKERAIEATNAEItkLRSRVDL 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 612 ALQLLmaqnRFLEERKEIMEKFAKEQDAFLRDAQEKhnhelqLLQQGHQQQLLALRMELETKH-RSELTEQLASSE---- 686
Cdd:pfam15921 529 KLQEL----QHLKNEGDHLRNVQTECEALKLQMAEK------DKVIEILRQQIENMTQLVGQHgRTAGAMQVEKAQleke 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 687 --SRRQALLETHVaeLQVKHNAEISALEKRhLSNLdELESCYVADVQTirdEHQQALELLRAELEEQLQKKESCHREM-- 762
Cdd:pfam15921 599 inDRRLELQEFKI--LKDKKDAKIRELEAR-VSDL-ELEKVKLVNAGS---ERLRAVKDIKQERDQLLNEVKTSRNELns 671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 763 LTQELENLKRQ---HAEELQSVRDSLRMEM-SAQ-HIENGKGPAADLQGAHQQDPAMALHNEGHLLVEDG--DAVLRSVD 835
Cdd:pfam15921 672 LSEDYEVLKRNfrnKSEEMETTTNKLKMQLkSAQsELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGqiDALQSKIQ 751
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 836 aegLLHQAGPQELGDAHTVEMQKSQ--AELAK--------PQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRE 905
Cdd:pfam15921 752 ---FLEEAMTNANKEKHFLKEEKNKlsQELSTvateknkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQ 828
|
810 820 830
....*....|....*....|....*....|....*.
gi 1720360658 906 RENQEGTTLICMLRADLELAQGEGKALRDALR-RLL 940
Cdd:pfam15921 829 RQEQESVRLKLQHTLDVKELQGPGYTSNSSMKpRLL 864
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2153-2430 |
9.59e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 9.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2153 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETA 2226
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2227 SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEvlrlryghvtwsycgtssASAGRAVLDGKEKELKvvleE 2306
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE------------------LKALREALDELRAELT----L 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2307 LESERGKgqalqaqQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEA 2383
Cdd:TIGR02168 815 LNEEAAN-------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEE 887
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1720360658 2384 LLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEA 2430
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2445-2600 |
1.02e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2445 KLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCV-ELRREKEVSGNLRSAVDALRTHKQELgcclqrerekaawl 2523
Cdd:COG2433 367 EVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEErELTEEEEEIRRLEEQVERLEAEVEEL-------------- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2524 QAELEQLSARVKEQEAR-KDARRMERRSSRADldkRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELR--WKEEVSGG 2600
Cdd:COG2433 433 EAELEEKDERIERLERElSEARSEERREIRKD---REISRLDREIERLERELEEERERIEELKRKLERLKelWKLEHSGE 509
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1139-1580 |
1.02e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1139 ILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLES 1218
Cdd:pfam12128 243 FTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1219 ELEDQLVQHRgcAQLAEEVATLKQQLAALDKhLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQlrqaarprppgpRDSQ 1298
Cdd:pfam12128 323 ELEALEDQHG--AFLDADIETAAADQEQLPS-WQSELENLEERLKALTGKHQDVTAKYNRRRSK------------IKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1299 VELLQEKLREKLDGfnelvikkdfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKKsmeELKEKEILKQENMGD 1378
Cdd:pfam12128 388 NNRDIAGIKDKLAK----------------IREARDRQLAVAEDDLQALESELREQLEAGKL---EFNEEEYRLKSRLGE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1379 LllttvsrsgldeagcpmlpqgsssRGPEAQPDVTERALLQHEN--EVVHRRNSEIDELKSLIENLQENQRQLQK--DKA 1454
Cdd:pfam12128 449 L------------------------KLRLNQATATPELLLQLENfdERIERAREEQEAANAEVERLQSELRQARKrrDQA 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1455 -EEIEQLHEVIEKLQSELSlmgpKVHEVSDPQAGSLHSELA------------CLRGEGLGGQALRSELQAAQAAKE--V 1519
Cdd:pfam12128 505 sEALRQASRRLEERQSALD----ELELQLFPQAGTLLHFLRkeapdweqsigkVISPELLHRTDLDPEVWDGSVGGElnL 580
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720360658 1520 FG------QLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAmASQIQEFAAT 1580
Cdd:pfam12128 581 YGvkldlkRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK-ASREETFART 646
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1273-1392 |
1.17e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1273 QQEIQRLEGQLrqaARPRppgprdSQVELLQEKLREKLDGFNELVIKKDFADQQLLIQ---EEEIKRLEETNASIQRQMV 1349
Cdd:COG2433 412 EEEIRRLEEQV---ERLE------AEVEELEAELEEKDERIERLERELSEARSEERREirkDREISRLDREIERLERELE 482
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1720360658 1350 QLQEELEKQKKSMEELkeKEILKQENMGDLL----LTTVSRSGLDEA 1392
Cdd:COG2433 483 EERERIEELKRKLERL--KELWKLEHSGELVpvkvVEKFTKEAIRRL 527
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
203-349 |
1.35e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 203 EKLRSEMEKNAQTIetLKqdwESERELclENLRQELSLKHQSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNle 282
Cdd:PRK12704 30 EAKIKEAEEEAKRI--LE---EAKKEA--EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR-- 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720360658 283 aqHQAAIKKLQEDLQSEhcqyLQDLEQKFREKEKaKELELETLQASY----EDLKAQSQEEIR-LLWSQLES 349
Cdd:PRK12704 101 --KLELLEKREEELEKK----EKELEQKQQELEK-KEEELEELIEEQlqelERISGLTAEEAKeILLEKVEE 165
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
176-431 |
1.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 176 LELLREQHAREKEEMAlrsgqEAAELKEKLRSEMEKNAQTIETLKQ---------DWES-ERELclENLRQELS--LKHQ 243
Cdd:COG4913 612 LAALEAELAELEEELA-----EAEERLEALEAELDALQERREALQRlaeyswdeiDVASaEREI--AELEAELErlDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 244 SEMEGLQSQF---QKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDLEQKFREkEKAKEL 320
Cdd:COG4913 685 DDLAALEEQLeelEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA-ALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 321 ElETLQASYEDLKAQSQEEIRLLWSQLESMKT--NRE--ELNGSWDPVLAQASH-LEELEHLRsgfaqqqqqeraqhESE 395
Cdd:COG4913 764 E-RELRENLEERIDALRARLNRAEEELERAMRafNREwpAETADLDADLESLPEyLALLDRLE--------------EDG 828
|
250 260 270
....*....|....*....|....*....|....*..
gi 1720360658 396 LEHlrvyFEKKLKDA-EKTYQEDLTVFQQRLQEARED 431
Cdd:COG4913 829 LPE----YEERFKELlNENSIEFVADLLSKLRRAIRE 861
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1051-1294 |
1.48e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1051 ALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEgfkvekvDLQEALGK 1130
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA-------ALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1131 KEESEQQLILELEDLRKQLQQAARELLTLKEEKSVlwnqKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLL 1210
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPL----ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1211 SQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPR 1290
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
....
gi 1720360658 1291 PPGP 1294
Cdd:COG4942 244 PAAG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1038-1472 |
1.49e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1038 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVErEFRHRNEEMAQAMQKQQELLERLREESAAK-DRLALELHTAKGLLEG 1116
Cdd:pfam15921 110 QSVIDLQTKLQEMQMERDAMADIRRRESQSQE-DLRNQLQNTVHELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1117 FKVEKVDLQEALGKK-EESEQQLILELEDLRKQLQQAARELLT----LKEEKSVLWNQKETLTNEAKER-EAALQE---- 1186
Cdd:pfam15921 189 IRSILVDFEEASGKKiYEHDSMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKiELLLQQhqdr 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1187 ----------EVESLTRVQWESRKQSEkdraTLLSQMRVLESELEDQLVQH-RGCAQLAEEVATLKQQLAALDK------ 1249
Cdd:pfam15921 269 ieqlisehevEITGLTEKASSARSQAN----SIQSQLEIIQEQARNQNSMYmRQLSDLESTVSQLRSELREAKRmyedki 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1250 -HLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQVELLQEKLREKLDGFNELVIkkDFADQQLL 1328
Cdd:pfam15921 345 eELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITI--DHLRRELD 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1329 IQEEEIKRLE--------ETNASIQRQMVQLQ---EELEKQKKSMEELKE-KEILkqenmgdlllttvsRSGLDEAGCPM 1396
Cdd:pfam15921 423 DRNMEVQRLEallkamksECQGQMERQMAAIQgknESLEKVSSLTAQLEStKEML--------------RKVVEELTAKK 488
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720360658 1397 LPQGSSSRgpeAQPDVTerALLQHENEVVHRRNSEIDELKSLIEnLQENQRQLQKDKAEEIEQLHEVIEKLQSELS 1472
Cdd:pfam15921 489 MTLESSER---TVSDLT--ASLQEKERAIEATNAEITKLRSRVD-LKLQELQHLKNEGDHLRNVQTECEALKLQMA 558
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1460-1596 |
1.82e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1460 LHEVIEKLQSELSLMGPKVHEVSD------PQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQ 1533
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADllslerQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 1534 ALEALQQrlqdaeeVAARHLAElehcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEID 1596
Cdd:PRK09039 124 ELDSEKQ-------VSARALAQ----VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1145-1476 |
2.13e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1145 LRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWEsRKQSEKDRATLLSQMRVLESELEdql 1224
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE-IEQLEQEEEKLKERLEELEEDLS--- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1225 vqhrgcaQLAEEVATLKQQLAALDKHL-RSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAarprppgprDSQVELLQ 1303
Cdd:TIGR02169 748 -------SLEQEIENVKSELKELEARIeELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL---------EEEVSRIE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1304 EKLREKLDGFNELVIKKDFAdqqlliqEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLlltT 1383
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYL-------EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL---E 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1384 VSRSGLDEagcpmlpqgsSSRGPEAQPDVTERAlLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEE------- 1456
Cdd:TIGR02169 882 SRLGDLKK----------ERDELEAQLRELERK-IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeee 950
|
330 340
....*....|....*....|..
gi 1720360658 1457 --IEQLHEVIEKLQSELSLMGP 1476
Cdd:TIGR02169 951 lsLEDVQAELQRVEEEIRALEP 972
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
119-551 |
2.14e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 119 ELEALRLSLNNMHTAQLELTQANLQKEK--------ETALTELREMLNGRRAQELALLQSRQQCE-----------LELL 179
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEIEELEKELESlegskrklEEKIRELEERIEELKKEIEELEEKVKELKelkekaeeyikLSEF 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 180 REQHAREKEEMALRSG---QEAAELKEKLRSEMEKNAQTIETLKQDWESERELCLENLRQEL---SLKHQSEMEGLQSQF 253
Cdd:PRK03918 302 YEEYLDELREIEKRLSrleEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeeAKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 254 Q-KELSEQKVELEKIFQAKHEAEV----------SLKNLEAQHQAAIKKLQE----------DLQSEHcqyLQDLEQKFR 312
Cdd:PRK03918 382 TgLTPEKLEKELEELEKAKEEIEEeiskitarigELKKEIKELKKAIEELKKakgkcpvcgrELTEEH---RKELLEEYT 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 313 EKEKAKELELETLQASYEDLKAQ---------SQEEIRLLWSQLESMKTNREELNGSWDPVLAQAShlEELEHLRSGFAQ 383
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKElrelekvlkKESELIKLKELAEQLKELEEKLKKYNLEELEKKA--EEYEKLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 384 -----QQQQERAQHESELEHLRVYFEKKLKDAEktyqEDLTVFQQRLQEAREDSLESTEISSSCVLPEETSGREGKEPPD 458
Cdd:PRK03918 537 lkgeiKSLKKELEKLEELKKKLAELEKKLDELE----EELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 459 PLdlqlgqpKVQESLVEDCQVKLSKAEEKIQQMKEEFQKKEAEWELSREELKREAEERLASMFLELREKAESEKLSIISR 538
Cdd:PRK03918 613 EL-------EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEEL 685
|
490
....*....|...
gi 1720360658 539 FEHRESSMRHLQD 551
Cdd:PRK03918 686 EKRREEIKKTLEK 698
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1084-1384 |
2.26e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1084 QKQQELLERLREES--AAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQqLILELEdlrkqlqqaaRELLTLKE 1161
Cdd:pfam17380 287 RQQQEKFEKMEQERlrQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQER-MAMERE----------RELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1162 EksvlwNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVlesELEDQLVQHRGCAQLAEEVATLK 1241
Cdd:pfam17380 356 E-----ERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKV---KILEEERQRKIQQQKVEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1242 QQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQVELLQEKLREKL----------- 1310
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKIlekeleerkqa 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1311 ---DGFNELVIKKDFADQQLLIQEEEIKRLEETN----------ASIQRQMVQLQEE------LEKQKKSMEELKEKEIL 1371
Cdd:pfam17380 508 mieEERKRKLLEKEMEERQKAIYEEERRREAEEErrkqqemeerRRIQEQMRKATEErsrleaMEREREMMRQIVESEKA 587
|
330
....*....|...
gi 1720360658 1372 KQENMGDLLLTTV 1384
Cdd:pfam17380 588 RAEYEATTPITTI 600
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1297-1469 |
2.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1297 SQVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELkEKEILKQENM 1376
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL-RAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1377 GDLLLTTVSRSGLDEAGCPMLPQGSSSRGpeaqpdVTERALLQHeneVVHRRNSEIDELKSLIENLQENQRQLQKDKAEE 1456
Cdd:COG4942 106 LAELLRALYRLGRQPPLALLLSPEDFLDA------VRRLQYLKY---LAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170
....*....|...
gi 1720360658 1457 IEQLHEVIEKLQS 1469
Cdd:COG4942 177 EALLAELEEERAA 189
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1046-1369 |
3.32e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1046 GLLEMALDSSKQLEEARQLhrcvEREFRHRNEEMAQAMQKQQELLERLREE-SAAKDRLALeLHTAKGLLEgfKVEK--- 1121
Cdd:COG3096 282 ELSERALELRRELFGARRQ----LAEEQYRLVEMARELEELSARESDLEQDyQAASDHLNL-VQTALRQQE--KIERyqe 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1122 ------VDLQEALGKKEESEQQLI----------LELEDLRKQL---QQAARELLT-----------LKEEKSVLWNQKE 1171
Cdd:COG3096 355 dleeltERLEEQEEVVEEAAEQLAeaearleaaeEEVDSLKSQLadyQQALDVQQTraiqyqqavqaLEKARALCGLPDL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1172 TLTNeAKEREAALQEEVESLTRVQWESRKQ--------SEKDRATLLSQMRVLESELED-------QLVQHRGCAQLAEE 1236
Cdd:COG3096 435 TPEN-AEDYLAAFRAKEQQATEEVLELEQKlsvadaarRQFEKAYELVCKIAGEVERSQawqtareLLRRYRSQQALAQR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1237 VATLKQQLAALDKHLRSqrqfmddqaaerehereefQQEIQRLEGQLRQAARprppGPRDSQVELlqeklrekldgfnel 1316
Cdd:COG3096 514 LQQLRAQLAELEQRLRQ-------------------QQNAERLLEEFCQRIG----QQLDAAEEL--------------- 555
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 1317 vikkdfaDQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKE 1369
Cdd:COG3096 556 -------EELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARA 601
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2176-2433 |
3.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2176 LCAALTSTEARGSQRE-HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQEN 2254
Cdd:COG4942 13 LAAAAQADAAAEAEAElEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2255 TSLLESLDKVQQEVLRLryghvtwsycgtssasAGRAVLDGKEKELKVVLeelesergkgqalQAQQEEQQLRYLQREGQ 2334
Cdd:COG4942 93 AELRAELEAQKEELAEL----------------LRALYRLGRQPPLALLL-------------SPEDFLDAVRRLQYLKY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2335 SSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQ 2414
Cdd:COG4942 144 LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250
....*....|....*....
gi 1720360658 2415 HERLLTEQLSRNSQEACAR 2433
Cdd:COG4942 224 ELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
851-1444 |
3.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 851 AHTVEMQKSQAELAKPQELQASQDQVAQVRdKVFLLNRELEECRAELEQLQQRRERenqegttlicmLRADLELAQGEgk 930
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQR-RLELLEAELEELRAELARLEAELER-----------LEARLDALREE-- 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 931 aLRDALRRLLDLFGDTLKAavtLKSRISERAGLLLDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEGAEtssvce 1010
Cdd:COG4913 325 -LDELEAQIRGNGGDRLEQ---LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE------ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1011 isshvcesffispentldceqpirrvyqslstavegllemaldsskqlEEARQLHRCVEREFRHRNEEmAQAMQKQQELL 1090
Cdd:COG4913 395 ------------------------------------------------ALEEELEALEEALAEAEAAL-RDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1091 ERLREESAAKDRLALELHTAKGLLEgfkvekvdlqEALGKKEeseqqlilelEDLRkqlqqAARELLTLKEEKS------ 1164
Cdd:COG4913 426 AEIASLERRKSNIPARLLALRDALA----------EALGLDE----------AELP-----FVGELIEVRPEEErwrgai 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1165 --VLWNQKETLTNEAkEREAALQEEVESL---TRVQWE-------SRKQSEKDRATLLSQMRVLESELED---QLVQHRG 1229
Cdd:COG4913 481 erVLGGFALTLLVPP-EHYAAALRWVNRLhlrGRLVYErvrtglpDPERPRLDPDSLAGKLDFKPHPFRAwleAELGRRF 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1230 CAQLAEEVATLKQQ-----LAALDKHLRSQRQfMDDQAAER---------EHEREEFQQEIQRLEGQLRQAARPRppGPR 1295
Cdd:COG4913 560 DYVCVDSPEELRRHpraitRAGQVKGNGTRHE-KDDRRRIRsryvlgfdnRAKLAALEAELAELEEELAEAEERL--EAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1296 DSQVELLQEKLR--EKLDGFNELVIKKDFADQQLLIQEEEIKRLEETN---ASIQRQMVQLQEELEKQKKSMEELKEKEI 1370
Cdd:COG4913 637 EAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIG 716
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720360658 1371 LKQENMGDLL-LTTVSRSGLDEAGcpmlPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKSLIENLQE 1444
Cdd:COG4913 717 RLEKELEQAEeELDELQDRLEAAE----DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEE 787
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
855-1256 |
3.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 855 EMQKSQAELAKPQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEgttlicMLRADLELAQGEGKALRD 934
Cdd:COG4717 180 EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE------LEAAALEERLKEARLLLL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 935 ALRRLLDLFGdtlkAAVTLKSRISERAGLLLdhedaadtsdARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEISsh 1014
Cdd:COG4717 254 IAAALLALLG----LGGSLLSLILTIAGVLF----------LVLGLLALLFLLLAREKASLGKEAEELQALPALEELE-- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1015 vcesffispentldcEQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVERefrhrneemaqamQKQQELLERLR 1094
Cdd:COG4717 318 ---------------EEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE-------------LEEELQLEELE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1095 EESAAkdrlalelhtakgLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTL--KEEKSVLWNQKET 1172
Cdd:COG4717 370 QEIAA-------------LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1173 LTNEAKEREAALQEEVESLTRVQWESRKQSEKDRatlLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLR 1252
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELEQLEEDGE---LAELLQELEELKAEL------RELAEEWAALKLALELLEEARE 507
|
....
gi 1720360658 1253 SQRQ 1256
Cdd:COG4717 508 EYRE 511
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1145-1585 |
4.04e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1145 LRKQLQQAARELLTLKEEKSVL----WNQKETLTNEAKEREAALQEEVESLTRVQwESRKQSEKDRATLLSQMRVLEsEL 1220
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELnlkeLKELEEELKEAEEKEEEYAELQEELEELE-EELEELEAELEELREELEKLE-KL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1221 EDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAErehereefQQEIQRLEGQLRQAARPRPPGprdsqve 1300
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEEL--------EAELAELQEELEELLEQLSLA------- 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1301 lLQEKLREKLDGFNELvikkdfadqqlliqEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE------ 1374
Cdd:COG4717 190 -TEEELQDLAEELEEL--------------QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllli 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1375 ---------NMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKS---LIENL 1442
Cdd:COG4717 255 aaallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPDL 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1443 QENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSElaclrgeglggQALRSELQAAQAAKEVFGQ 1522
Cdd:COG4717 335 SPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDE-----------EELRAALEQAEEYQELKEE 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720360658 1523 LLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMASQIQEFAATLKAKE 1585
Cdd:COG4717 404 LEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1070-1227 |
6.05e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1070 REFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGfkvekvDLQEALGKKEESEQQLIL-----ELED 1144
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL------EIEEVEARIKKYEEQLGNvrnnkEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1145 LRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQ---SEKDRATLLSQMRVLESELE 1221
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEElaeLEAELEELEAEREELAAKIP 173
|
....*.
gi 1720360658 1222 DQLVQH 1227
Cdd:COG1579 174 PELLAL 179
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
144-294 |
7.31e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 144 KEKETALTELREMLNGRRAQELALLQSRQQCELELLREQHAREKEEMALRSGQ--EAAELKEKLRSEMEKN-AQTIETLK 220
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARldALREELDELEAQIRGNgGDRLEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 221 QD---WESERELCLENLRQ--------ELSLKH-QSEMEGLQSQFQKELSEQKVELEKIFQAKHEAEVSLKNLEAQHQAA 288
Cdd:COG4913 345 REierLERELEERERRRARleallaalGLPLPAsAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
|
....*.
gi 1720360658 289 IKKLQE 294
Cdd:COG4913 425 EAEIAS 430
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1118-1370 |
8.41e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1118 KVEKVDLQEAL---GKKEESEQqlilELEDLRKQLQQAARELLTLKEEksvLWNQKETLTNEAKEREAAL-QEEVESLTR 1193
Cdd:PRK11281 59 KLVQQDLEQTLallDKIDRQKE----ETEQLKQQLAQAPAKLRQAQAE---LEALKDDNDEETRETLSTLsLRQLESRLA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1194 VQWESRKQSEKDRATLLSQMRVLESELEdqlvqhRGCAQLAEEVatlkQQLAALDKHLRSQRqfmDDQAAEREHEREEFQ 1273
Cdd:PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPE------RAQAALYANS----QRLQQIRNLLKGGK---VGGKALRPSQRVLLQ 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 1274 QEIQRLEGQLRQaarprppgprdSQVEL-----LQEKLREKLDgfnELVIKKDFADQQLLIQEEEI--KRLEETnasiQR 1346
Cdd:PRK11281 199 AEQALLNAQNDL-----------QRKSLegntqLQDLLQKQRD---YLTARIQRLEHQLQLLQEAInsKRLTLS----EK 260
|
250 260
....*....|....*....|....
gi 1720360658 1347 QMVQLQEELEKQKKSMEELKEKEI 1370
Cdd:PRK11281 261 TVQEAQSQDEAARIQANPLVAQEL 284
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2192-2466 |
8.64e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2192 HQLRRQVELL---AYKVEQEKCIANEL---QKTLSKeqetasdvrKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQ 2265
Cdd:TIGR02168 196 NELERQLKSLerqAEKAERYKELKAELrelELALLV---------LRLEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2266 QEVLRLRYGHvtwsycgtSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRY---LQREGQSSRALEEL 2342
Cdd:TIGR02168 267 EKLEELRLEV--------SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 2343 KLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALqherlltEQ 2422
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-------ER 411
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1720360658 2423 LSRNSQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQ 2466
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE 455
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
73-399 |
9.97e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 73 PSCSNTLEGTRGASAAQEQ----EDCELDVTDLQGQQQTQPPPPQTAHSL---ELEALRLSLNNMHTAQLELTQANLQKE 145
Cdd:PRK02224 455 PECGQPVEGSPHVETIEEDrervEELEAELEDLEEEVEEVEERLERAEDLveaEDRIERLEERREDLEELIAERRETIEE 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 146 KETALTELREmlngrRAQELallqsrqQCELELLREQhAREKEEMALRSGQEAAELKEKLrsemEKNAQTIETLKQDWES 225
Cdd:PRK02224 535 KRERAEELRE-----RAAEL-------EAEAEEKREA-AAEAEEEAEEAREEVAELNSKL----AELKERIESLERIRTL 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 226 ERELclENLRQELS-----LKHQSEMEGLQSQFQKELSEQKVELEKIFQAkheaevslknleaqhqAAIKKLQEDLQSEH 300
Cdd:PRK02224 598 LAAI--ADAEDEIErlrekREALAELNDERRERLAEKRERKRELEAEFDE----------------ARIEEAREDKERAE 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720360658 301 cQYLQDLEQKFREKEKAKEleletlqasyeDLkaqsQEEIRLLWSQLESMKTNREELNGSWDPVLAQASHLEELEHLRSG 380
Cdd:PRK02224 660 -EYLEQVEEKLDELREERD-----------DL----QAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESM 723
|
330
....*....|....*....
gi 1720360658 381 FAQQQQQERAQHESELEHL 399
Cdd:PRK02224 724 YGDLRAELRQRNVETLERM 742
|
|
| |
