|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
158-458 |
6.90e-59 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 196.68 E-value: 6.90e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 158 LVEYMTKVHALEQVSQELETQLRAHLESK-AKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYE 236
Cdd:pfam00038 13 LASYIDKVRFLEQQNKLLETKISELRQKKgAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 237 NEQPFRKAAEEEVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEDVKVLYKQLA-GSELEQADVPMGTGLDDVL 315
Cdd:pfam00038 93 DELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSdTQVNVEMDAARKLDLTSAL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 316 ETIRVQWERDVEKNRAEAGALLQAKqqTEVVHVSQTQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHDA 395
Cdd:pfam00038 173 AEIRAQYEEIAAKNREEAEEWYQSK--LEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAET 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720429980 396 QHWHDMELQNLGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVASYHALLDREENK 458
Cdd:pfam00038 251 EERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
173-459 |
2.02e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 173 QELETQLRAHleSKAKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFK-ERYEneqpfrkaAEEEVSS 251
Cdd:TIGR02168 216 KELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSE--------LEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 252 LYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEDVKVLYKQLAGSELEQADVPMGTGLDDVLETIRVQWERDVEKNRA 331
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 332 EAGALLQAKQQTEVVH------VSQTQEEKLAAA-----LSVELHDTSRQVQSLQAETESLRALKRGLENSLHDAQ-HWH 399
Cdd:TIGR02168 366 ELEELESRLEELEEQLetlrskVAQLELQIASLNneierLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEEL 445
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 400 DMELQNLGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVASYHALLDREENKY 459
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-460 |
5.86e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 5.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 165 VHALEQVSQELETQLRAHLESKAKSsggwDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYENEQPFRKA 244
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAEL----EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 245 AEEEVSSLYKVIDEANLTKTDLEHQIESLKEELgflsRSYEEDVKVLYKQLAGSELEQADVpmgTGLDDVLETIRVQWER 324
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEA---EEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 325 DVEKNRAEAGALLQAKQQTEvvhVSQTQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHDAQHwhdmELQ 404
Cdd:COG1196 380 ELEELAEELLEALRAAAELA---AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE----EEA 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720429980 405 NLGAVVGRLEAELAEIRSETEQQQQERAHLLAcksQLQKDVASYHALLDREENKYG 460
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLE---ELAEAAARLLLLLEAEADYEG 505
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
228-453 |
2.04e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 228 ADDFKERYENEQpfrkaaeEEVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEDVKVLYKQLAGSELEQADVPM 307
Cdd:PRK02224 239 ADEVLEEHEERR-------EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 308 GTGLDDVLETIRVQWERDVEKNRAEAGALL-QAKQQTEVVHVSQTQEEKL---AAALSVELHDTSRQVQSLQAETESLRA 383
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNeEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEELEE 391
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 384 LKRGLENSLHDAqhwhdmelqnlGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVASYHALLD 453
Cdd:PRK02224 392 EIEELRERFGDA-----------PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLE 450
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
158-458 |
6.90e-59 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 196.68 E-value: 6.90e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 158 LVEYMTKVHALEQVSQELETQLRAHLESK-AKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYE 236
Cdd:pfam00038 13 LASYIDKVRFLEQQNKLLETKISELRQKKgAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 237 NEQPFRKAAEEEVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEDVKVLYKQLA-GSELEQADVPMGTGLDDVL 315
Cdd:pfam00038 93 DELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSdTQVNVEMDAARKLDLTSAL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 316 ETIRVQWERDVEKNRAEAGALLQAKqqTEVVHVSQTQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHDA 395
Cdd:pfam00038 173 AEIRAQYEEIAAKNREEAEEWYQSK--LEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAET 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720429980 396 QHWHDMELQNLGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVASYHALLDREENK 458
Cdd:pfam00038 251 EERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
173-459 |
2.02e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 173 QELETQLRAHleSKAKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFK-ERYEneqpfrkaAEEEVSS 251
Cdd:TIGR02168 216 KELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSE--------LEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 252 LYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEDVKVLYKQLAGSELEQADVPMGTGLDDVLETIRVQWERDVEKNRA 331
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 332 EAGALLQAKQQTEVVH------VSQTQEEKLAAA-----LSVELHDTSRQVQSLQAETESLRALKRGLENSLHDAQ-HWH 399
Cdd:TIGR02168 366 ELEELESRLEELEEQLetlrskVAQLELQIASLNneierLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEEL 445
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 400 DMELQNLGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVASYHALLDREENKY 459
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-460 |
5.86e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 5.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 165 VHALEQVSQELETQLRAHLESKAKSsggwDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYENEQPFRKA 244
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAEL----EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 245 AEEEVSSLYKVIDEANLTKTDLEHQIESLKEELgflsRSYEEDVKVLYKQLAGSELEQADVpmgTGLDDVLETIRVQWER 324
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEA---EEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 325 DVEKNRAEAGALLQAKQQTEvvhVSQTQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHDAQHwhdmELQ 404
Cdd:COG1196 380 ELEELAEELLEALRAAAELA---AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE----EEA 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720429980 405 NLGAVVGRLEAELAEIRSETEQQQQERAHLLAcksQLQKDVASYHALLDREENKYG 460
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLE---ELAEAAARLLLLLEAEADYEG 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
163-458 |
7.05e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 163 TKVHALEQVSQELETQLRAHLESKAKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYENEQPFR 242
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 243 KAAEEEVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEdvkvlyKQLAGSELEQADVPMGTGLDDVLETIRVQW 322
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN------LRERLESLERRIAATERRLEDLEEQIEELS 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 323 ER--DVEKNRAEAGALLqAKQQTEVVHVSQ--TQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHDAQhw 398
Cdd:TIGR02168 852 EDieSLAAEIEELEELI-EELESELEALLNerASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE-- 928
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720429980 399 hdMELQnlgavvgRLEAELAEIRSE-TEQQQQERAHLLACKSQLQKDVASYHALLDREENK 458
Cdd:TIGR02168 929 --LRLE-------GLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
173-442 |
1.53e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 173 QELETQLRAHLESKAKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYENEQPFRKAAEEEVSSL 252
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 253 YKVIDEanltktdLEHQIESLKEELGFLSRSyeedvkvlykqLAGSELEQADvpmgtGLDDVLETIRVQWErdveknrae 332
Cdd:TIGR02169 764 EARIEE-------LEEDLHKLEEALNDLEAR-----------LSHSRIPEIQ-----AELSKLEEEVSRIE--------- 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 333 aGALLQAKQQTEVVHVSQTQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHDAQHW---HDMELQNLGAV 409
Cdd:TIGR02169 812 -ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAlrdLESRLGDLKKE 890
|
250 260 270
....*....|....*....|....*....|....*..
gi 1720429980 410 VGRLEAELAEIRSETEQQ----QQERAHLLACKSQLQ 442
Cdd:TIGR02169 891 RDELEAQLRELERKIEELeaqiEKKRKRLSELKAKLE 927
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
168-443 |
1.56e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 168 LEQVSQELETQLRAHLESKAKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYENEQPFRKAAEE 247
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 248 EVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEE---DVKVLYKQLAgsELEQADVPMGTGLDDVLETIRvQWER 324
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEElesELEALLNERA--SLEEALALLRSELEELSEELR-ELES 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 325 DVEKNRAEAGALlQAKQQTEVVHVS------QTQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENslhdaqhw 398
Cdd:TIGR02168 909 KRSELRRELEEL-REKLAQLELRLEglevriDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN-------- 979
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1720429980 399 hdmELQNLGAVvgRLEAeLAEIRSETEQQQ---QERAHLLACKSQLQK 443
Cdd:TIGR02168 980 ---KIKELGPV--NLAA-IEEYEELKERYDfltAQKEDLTEAKETLEE 1021
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
228-453 |
2.04e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 228 ADDFKERYENEQpfrkaaeEEVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEDVKVLYKQLAGSELEQADVPM 307
Cdd:PRK02224 239 ADEVLEEHEERR-------EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 308 GTGLDDVLETIRVQWERDVEKNRAEAGALL-QAKQQTEVVHVSQTQEEKL---AAALSVELHDTSRQVQSLQAETESLRA 383
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNeEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEELEE 391
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 384 LKRGLENSLHDAqhwhdmelqnlGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVASYHALLD 453
Cdd:PRK02224 392 EIEELRERFGDA-----------PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLE 450
|
|
| CEP63 |
pfam17045 |
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole ... |
246-443 |
9.85e-04 |
|
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole activity.
Pssm-ID: 465338 [Multi-domain] Cd Length: 264 Bit Score: 40.96 E-value: 9.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 246 EEEVSSLYKVIDEANLTKTDL----EHQIESLKEELGFLSRSYEedvKVLYKQL----AGSELEQADVPMGTGLDDVLET 317
Cdd:pfam17045 55 HKEIGLLRQQLEELEKGKQELvakyEQQLQKLQEELSKLKRSYE---KLQRKQLkearEEAKSREEDRSELSRLNGKLEE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 318 IRvQWERDVEKNRAEAG---ALLQAKQQTEVVHVSQTQeeklAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHd 394
Cdd:pfam17045 132 FR-QKSLEWEQQRLQYQqqvASLEAQRKALAEQSSLIQ----SAAYQVQLEGRKQCLEASQSEIQRLRSKLERAQDSLC- 205
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1720429980 395 AQhwhDMELQNLGAvvgrLEAELAEIRSETEQQQQERAHLLACKSQLQK 443
Cdd:pfam17045 206 AQ---ELELERLRM----RVSELGDSNRKLLEEQQRLLEELRMSQRQLQ 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
264-476 |
1.18e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 264 TDLEHQIESLKEELGFLSRSYEEDVKVLYKQ--LAGSELEQAdvpmgtglddvletirvQWERDveKNRAEAGALlqakq 341
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQlvLANSELTEA-----------------RTERD--QFSQESGNL----- 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 342 qtevvhvsQTQEEKLAAalsvELHDTSRQVqSLQAEtESLRALKRGLENSLHDAQHWHDMELQNLGavVGRLEAELAEIR 421
Cdd:pfam15921 376 --------DDQLQKLLA----DLHKREKEL-SLEKE-QNKRLWDRDTGNSITIDHLRRELDDRNME--VQRLEALLKAMK 439
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1720429980 422 SETEQQQQERAHLLACKSQLQKDVASYHALLDREENKYGHVMcsgSSLSAGRMQM 476
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV---EELTAKKMTL 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
265-456 |
1.92e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 265 DLEHQIESLKEELGFLSrsYEEDVKVLYKQLAG--SELEQADVPMgtgldDVLETIRVQWERDVEKNRAEAGALLQAKQQ 342
Cdd:COG3206 193 EAEAALEEFRQKNGLVD--LSEEAKLLLQQLSEleSQLAEARAEL-----AEAEARLAALRAQLGSGPDALPELLQSPVI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 343 TEVVHVSQTQEEKLAAaLSVELHDTSRQVQSLQAETESLRA-LKRGLENSLHDAQHwhdmELQNLGAVVGRLEAELAEIR 421
Cdd:COG3206 266 QQLRAQLAELEAELAE-LSARYTPNHPDVIALRAQIAALRAqLQQEAQRILASLEA----ELEALQAREASLQAQLAQLE 340
|
170 180 190
....*....|....*....|....*....|....*
gi 1720429980 422 SETEQQQQERAHLLACKSQLQKDVASYHALLDREE 456
Cdd:COG3206 341 ARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
261-447 |
2.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 261 LTKTDLEHQIESLKEELGFLSRSYEEdVKVLYKQL--------AGSELEQADVPMGTgLDDVLETIRVQ--------WER 324
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEA-LEDAREQIellepireLAERYAAARERLAE-LEYLRAALRLWfaqrrlelLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 325 DVEKNRAEAGALLQAKQQTEVvHVSQTQEEKLAAALSVELHDTsRQVQSLQAETESLRALKRGLENSLHDAQHW-HDMEL 403
Cdd:COG4913 296 ELEELRAELARLEAELERLEA-RLDALREELDELEAQIRGNGG-DRLEQLEREIERLERELEERERRRARLEALlAALGL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1720429980 404 QN------LGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVAS 447
Cdd:COG4913 374 PLpasaeeFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
167-345 |
3.25e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 167 ALEQVSQELETQLRAHLESKAKSSGGWDALRASWASSYQQVGEaVLEN---ARLLLQMETIQAGADDFKERYENEQPFRK 243
Cdd:COG3206 216 LLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE-LLQSpviQQLRAQLAELEAELAELSARYTPNHPDVI 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 244 AAEEEVSSLYKVID-EANLTKTDLEHQIESLKEELGFLSRSYEEdVKVLYKQLAGSELEQADVpmgtglddvletirvqw 322
Cdd:COG3206 295 ALRAQIAALRAQLQqEAQRILASLEAELEALQAREASLQAQLAQ-LEARLAELPELEAELRRL----------------- 356
|
170 180
....*....|....*....|...
gi 1720429980 323 ERDVEKNRAEAGALLQAKQQTEV 345
Cdd:COG3206 357 EREVEVARELYESLLQRLEEARL 379
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
244-422 |
3.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 244 AAEEEVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEdvkvLYKQLAGSELEQADvpmgtglddvletirvQWE 323
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDE----LEAQIRGNGGDRLE----------------QLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 324 RDVEKNRAEAGALLQAKQQTEvvhvsqtqeeKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSLHDAQHWHDMEL 403
Cdd:COG4913 345 REIERLERELEERERRRARLE----------ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
170
....*....|....*....
gi 1720429980 404 QNLGAVVGRLEAELAEIRS 422
Cdd:COG4913 415 RDLRRELRELEAEIASLER 433
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
242-447 |
4.19e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 242 RKAAEEEVSSLYKVIDEANLTKTDL--EHQIESLKEELGFLSrsyeedvkvlykqlAGSELEQADVPMGTGLDDVLETIR 319
Cdd:pfam12128 541 RKEAPDWEQSIGKVISPELLHRTDLdpEVWDGSVGGELNLYG--------------VKLDLKRIDVPEWAASEEELRERL 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 320 VQWERDVEKNRAEAGALLQAKQQTEVVHVSQTQEEKLAAA-----------LSVELHDTSRQVQSLQAE-----TESLRA 383
Cdd:pfam12128 607 DKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalknarldlrrLFDEKQSEKDKKNKALAErkdsaNERLNS 686
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720429980 384 LKRGLENSLHDAQHW----------HDME-LQNLGAVVGRLEAELAEIRSETEQQQ-QERAHLLACKSQLQKDVAS 447
Cdd:pfam12128 687 LEAQLKQLDKKHQAWleeqkeqkreARTEkQAYWQVVEGALDAQLALLKAAIAARRsGAKAELKALETWYKRDLAS 762
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
164-336 |
4.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 164 KVHALEQVSQELETQLRAHLESKAKSSGGWDALRASwASSYQQ----------VGEAVLENARLLLQMETIQAGADDFKE 233
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQER-REALQRlaeyswdeidVASAEREIAELEAELERLDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 234 RYENeqpfRKAAEEEVSSLYKVIDEANLTKTDLEHQIESLKEELGFLSR---SYEEDVKVLYKQLAGSELEQADVpmgtg 310
Cdd:COG4913 690 LEEQ----LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDrleAAEDLARLELRALLEERFAAALG----- 760
|
170 180
....*....|....*....|....*.
gi 1720429980 311 lDDVLETIRVQWERDVEKNRAEAGAL 336
Cdd:COG4913 761 -DAVERELRENLEERIDALRARLNRA 785
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
151-392 |
6.32e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.17 E-value: 6.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 151 VEDLGGCLVEYmTKVHALEQVSQELETQLRAHLESKAKSsggwDALRASWASSYQQVGEAVLENARLLLQMETIQAGADD 230
Cdd:COG5185 291 FENTKEKIAEY-TKSIDIKKATESLEEQLAAAEAEQELE----ESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIEN 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 231 FKERYENEQPFRKA--AEEEVSSLYKVIDEA---------------NLTKTDLEHQIESLKEELGFLSRSYEEDVKVLyk 293
Cdd:COG5185 366 IVGEVELSKSSEELdsFKDTIESTKESLDEIpqnqrgyaqeilatlEDTLKAADRQIEELQRQIEQATSSNEEVSKLL-- 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 294 QLAGSELEQADVPMGTGLDDVLETIRVQWERDVEKNRAEA-GALLQAKQQtevVHVSQTQEEKLAAALSVELHdTSRQVQ 372
Cdd:COG5185 444 NELISELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLnEELTQIESR---VSTLKATLEKLRAKLERQLE-GVRSKL 519
|
250 260
....*....|....*....|
gi 1720429980 373 SLQAETESLRALKRGLENSL 392
Cdd:COG5185 520 DQVAESLKDFMRARGYAHIL 539
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
222-430 |
6.38e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.17 E-value: 6.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 222 ETIQAGADDFKERYENEQPFRKAAEEEVSSLYKvidEANLTKTDLEHQIESLKEELgflsRSYEEDVKVLYKQLAGSELE 301
Cdd:COG5185 246 EDLAQTSDKLEKLVEQNTDLRLEKLGENAESSK---RLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 302 QADVPMGtglddvlETIRVQWERDVEKNRAEAGALLQAKQQTEVVHVSQTQEEKLAAalSVELHDTSRQVQSLQAETESL 381
Cdd:COG5185 319 AAAEAEQ-------ELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVG--EVELSKSSEELDSFKDTIEST 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1720429980 382 RalkRGLENSLHDAQHWHDMELQNLGAVVGRLEAELAEIRSETEQQQQE 430
Cdd:COG5185 390 K---ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSS 435
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
213-441 |
8.72e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 38.88 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 213 ENARLLLQMETIQA--GADDFKERyeneqpfRKAAEEEVSSLYKVIDE-ANLTKTdLEHQIESLKEElgflsrsyeedVK 289
Cdd:PRK10929 36 KAAKTPAQAEIVEAlqSALNWLEE-------RKGSLERAKQYQQVIDNfPKLSAE-LRQQLNNERDE-----------PR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720429980 290 VLYKQLAGSELEQADVPMGTGLddvLETIR-VQWERDveKNRAEAGALLQ-AKQQTEVVHVSQTQEEKLAAALSVELHDT 367
Cdd:PRK10929 97 SVPPNMSTDALEQEILQVSSQL---LEKSRqAQQEQD--RAREISDSLSQlPQQQTEARRQLNEIERRLQTLGTPNTPLA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720429980 368 SRQVQSLQAETESLRALKRGLEnslhdaqhwhdmeLQNLGAvvgRLEAELAEIRSETEQQQQER--AHLLACKSQL 441
Cdd:PRK10929 172 QAQLTALQAESAALKALVDELE-------------LAQLSA---NNRQELARLRSELAKKRSQQldAYLQALRNQL 231
|
|
| |
