|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
350-644 |
1.55e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.70 E-value: 1.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 350 LHELEKNL-------------MQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEARE 416
Cdd:COG1196 195 LGELERQLeplerqaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 417 QLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS 496
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 497 EGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALE 576
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428054 577 EEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 644
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
309-614 |
1.74e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.15 E-value: 1.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 309 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEA 388
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 389 RQstskiDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLH 468
Cdd:COG1196 301 EQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 469 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE 548
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428054 549 EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 614
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
262-639 |
5.88e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 89.36 E-value: 5.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 262 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDketvfLQYRLQDLQqqYTESQKLSLKKDK 341
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-----LLKEKREYE--GYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 342 LLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT---SLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQL 418
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 419 KVSDQNLTQSKEEAHLSASSLEDAHRKIEncllqdkqkeevikDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 498
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIE--------------EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 499 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 578
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 579 IEALRQEAKRKekmaKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 639
Cdd:TIGR02169 464 LSKYEQELYDL----KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
345-613 |
3.49e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 87.05 E-value: 3.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 345 DKDERLHELEKNLMQVQNSLREKEAELEKLqctTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSD 422
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENR---LDELSQELSDASRKIGEIekEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 423 QNLTQSKEEAHLSASSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 502
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHK--LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 503 SNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEAL 582
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSI-------EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
250 260 270
....*....|....*....|....*....|....
gi 1720428054 583 R---QEAKRKEKMAKEHLRKLDEEKENLQAELTS 613
Cdd:TIGR02169 902 ErkiEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
349-660 |
3.65e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 3.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 349 RLHELEKNLMQVQNSLREKEAELEKL--QCTTKELDTSLQEARQstsKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLT 426
Cdd:COG1196 180 KLEATEENLERLEDILGELERQLEPLerQAEKAERYRELKEELK---ELEAELLLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 427 QSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE 506
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 507 KEKSLLQKTLDEDEKKIDELfhsTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEA 586
Cdd:COG1196 337 EELEELEEELEEAEEELEEA---EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428054 587 KRKEKMAKEHLRKLDEEKENLQAELTSRsSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 660
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
397-728 |
1.95e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 1.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 397 CEALRAEIQKLKDSLEEAREQLKVSdQNLTQSKEEAHLSASSLEDAHRKienclLQDKQKEEVIKDLQSQLHKLQKESSK 476
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKLRELE-----AELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 477 IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLdedekkidelfhstQVSEQKQRELTNSIRKLEEELLEIKG 556
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI--------------ARLEERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 557 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSL---NKYNSSQKVIQ 633
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAelaAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 634 ELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 712
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEaAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330
....*....|....*.
gi 1720428054 713 ERKAQLEDEIAAYEER 728
Cdd:COG1196 491 ARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-889 |
2.11e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 2.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 245 TKILKHLQEQKDSqcLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQD 324
Cdd:TIGR02168 212 AERYKELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK----LEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 325 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstsKIDCEALRAEI 404
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-----KEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 405 QKLKDSLEEAREQLKVSDQNLTQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHN 484
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSK----------------------------VAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 485 RQRLQELSSELSEGQRRLSNAEKEKslLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 564
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 565 LKKSKEQEKALEEEIEALRQEAKRKEKMAKEH-----LRKLDEEKEnlQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 639
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlseLISVDEGYE--AAIEAALGGRLQAVVVENLNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 640 ARQKDSIMILQTQLDSAIQ--------KEKNCFQNMVSKEAYEELVRKSGN-------CQDDLTQALEKLTQ-------- 696
Cdd:TIGR02168 569 ELGRVTFLPLDSIKGTEIQgndreilkNIEGFLGVAKDLVKFDPKLRKALSyllggvlVVDDLDNALELAKKlrpgyriv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 697 ------------ATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV 764
Cdd:TIGR02168 649 tldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 765 lqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTP--KETCRHHRENDQIMNNVEQWAKEQKIA 842
Cdd:TIGR02168 729 ----SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1720428054 843 NEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 889
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
399-738 |
2.21e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 81.27 E-value: 2.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 399 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 478
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 479 EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDE-KKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL 557
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 558 LEEKREQLKKS----KEQEKALEEEIEALRQEAKRKEKMAKEH---LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 630
Cdd:TIGR02169 831 LEKEIQELQEQridlKEQIKSIEKEIENLNGKKEELEEELEELeaaLRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 631 VIQELNAEIARQKDSIMILQTQLdSAIQKEKNCFQNMVSKEAYEELVRKSgncQDDLTQALEKL----TQATSETKSLNR 706
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAE---LQRVEEEIRALepvnMLAIQEYEEVLK 986
|
330 340 350
....*....|....*....|....*....|..
gi 1720428054 707 SLQQTQERKAQLEDEIAAYEERMKKLNmELKK 738
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYE-KKKR 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
176-813 |
3.22e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 3.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 176 QETLKRLSEVWQKVSEQDDLIQELRNKLacsNSLVLEREEAL--IKLQAEFASYTATHRHpptssedceditKILKHLQE 253
Cdd:COG1196 175 EEAERKLEATEENLERLEDILGELERQL---EPLERQAEKAEryRELKEELKELEAELLL------------LKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 254 QKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCV---IEKKDKETVFLQYRLQDLQQQYT 330
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELlaeLARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 331 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKlqcttkeldtsLQEARQstskidcEALRAEIQKLKDS 410
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE-----------AEEALL-------EAEAELAEAEEEL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 411 LEEAREQLKVSDQNLTQSKEEAHLsASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQE 490
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEEL-EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 491 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 570
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 571 QEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSI 646
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 647 MILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYE 726
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT---LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 727 ERMKKLNMELKKLQgfqqqseqevhnfdkklEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEP 806
Cdd:COG1196 693 LELEEALLAEEEEE-----------------RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
....*..
gi 1720428054 807 YSPPAKL 813
Cdd:COG1196 756 LPEPPDL 762
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
171-740 |
6.68e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 79.34 E-value: 6.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 171 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHrhpptssEDCEDITKILKH 250
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-------KELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 251 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLElDLHGLREETSCVIEKKDKETVFLqYRLQDLQQQYT 330
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDEL-REIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 331 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcTTKELDTSLQEARQSTSKIDCEALRAEIQKL--- 407
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEKELEELeka 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 408 KDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC--LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNR 485
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 486 QRLQELSSELSEGQRRLSNAEKEKSLlqKTLDEDEKKIDelfhsTQVSEQKQRELtnsiRKLEEELLEIKGlleeKREQL 565
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQL--KELEEKLKKYN-----LEELEKKAEEY----EKLKEKLIKLKG----EIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 566 KKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDs 645
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK- 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 646 imiLQTQLDSA-------------IQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 712
Cdd:PRK03918 624 ---LEEELDKAfeelaetekrleeLRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
570 580
....*....|....*....|....*...
gi 1720428054 713 ERKaqleDEIAAYEERMKKLNMELKKLQ 740
Cdd:PRK03918 701 EEL----EEREKAKKELEKLEKALERVE 724
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
248-805 |
8.65e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 8.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 248 LKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREE---TSCVIEKKDKETVFLQYRLQD 324
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 325 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEALRAEI 404
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE-----QLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 405 QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQ-----KEEVIKDLQSQLHKLQKESSKIEE 479
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQaeleeLEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 480 ERKHNRQRLQELSSELSEGQRRL-----------------SNAEKEKSL-----------------------------LQ 513
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLdslerlqenlegfsegvKALLKNQSGlsgilgvlselisvdegyeaaieaalggrLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 514 KTLDEDEKKIDELFHS--------------TQVSEQKQRELTNSIRK-----------LEEELLEIKGLLE--------- 559
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFlkqnelgrvtflplDSIKGTEIQGNDREILKniegflgvakdLVKFDPKLRKALSyllggvlvv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 560 ---------------------------------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKM-- 592
Cdd:TIGR02168 629 ddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKEle 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 593 -AKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKE 671
Cdd:TIGR02168 709 eLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 672 AyeelvrKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 751
Cdd:TIGR02168 789 A------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1720428054 752 NFDKKLEEMsnqvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 805
Cdd:TIGR02168 863 ELEELIEEL-------ESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
359-742 |
9.42e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 9.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 359 QVQNSLREKEAELEKLQCTTKELDTSLQearqstsKIDCEALRAEI-QKLKDSLEEAreqlkvsdqnltqskeEAHLSAS 437
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLK-------SLERQAEKAERyKELKAELREL----------------ELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 438 SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQkesskieeerkhnrqrlqelsSELSEGQRRLSNAEKEKSLLQKTLD 517
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELE---------------------EKLEELRLEVSELEEEIEELQKELY 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 518 EDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAK 594
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 595 EHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiQKEKNCFQNMVSKEAYE 674
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-ELKELQAELEELEEELE 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428054 675 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 742
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
248-799 |
1.95e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 1.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 248 LKHLQEQKDSQclhvEEYQNLVKDLR--------MELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQ 319
Cdd:COG1196 202 LEPLERQAEKA----ERYRELKEELKeleaelllLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 320 YRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEA 399
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE-----ELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 400 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 479
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 480 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLE 559
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 560 EKREQLKKS----------------KEQEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLD 619
Cdd:COG1196 509 GVKAALLLAglrglagavavligveAAYEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 620 SSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATS 699
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 700 ETKSL----NRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 775
Cdd:COG1196 669 ELLAAlleaEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|....*...
gi 1720428054 776 KMLAAKESQ----LREFQEEMATLRESL 799
Cdd:COG1196 749 EEEALEELPeppdLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
110-799 |
4.51e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 4.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 110 ELEFRTQELQASYCSLLQYQSILEKQtsdlLVLHRhcklKEDEDPENKGDHPKVRIYTSPCVIQEHQETL----KRLSEV 185
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQ----KQILR----ERLANLERQLEELEAQLEELESKLDELAEELaeleEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 186 WQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASytathrhpptssedceditkilkhLQEQKDSQCLHVEEY 265
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ------------------------LELQIASLNNEIERL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 266 QNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR-EETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQ 344
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 345 DKDERLHELEKNLMQVQNSLRE-KEAELEKLQCT----------------TKELDTSLQEARQSTSKIDCEALRAEIQKL 407
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEGvKALLKNQSGLSgilgvlselisvdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 408 KDSLEEAR----------EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL------- 470
Cdd:TIGR02168 566 KQNELGRVtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAkklrpgy 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 471 ------------------------------QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDE 520
Cdd:TIGR02168 646 rivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 521 KKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKE---KMAKEHL 597
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeelKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 598 RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfqnmvsKEAYEELv 677
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL-------------EELIEEL- 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 678 rksgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKL 757
Cdd:TIGR02168 872 ------ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1720428054 758 EEmsnqvlQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 799
Cdd:TIGR02168 946 SE------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
437-805 |
5.79e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.65 E-value: 5.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 437 SSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE----ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLL 512
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 513 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKL-EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEalrqEAKRKEK 591
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELE----DAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 592 MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIarqkdsimilqtqldsaiqkekncfqnmvske 671
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-------------------------------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 672 ayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 751
Cdd:TIGR02169 374 --EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1720428054 752 NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 805
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
173-816 |
1.26e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 173 QEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAthrhpptsseDCEDITKILKHLQ 252
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----------EISRLEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 253 EQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYTES 332
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE----LEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 333 QKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLE 412
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 413 EAREQLKVSDQNLTQSKEEAHLSAS------SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSK---------- 476
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQArldsleRLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalg 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 477 -----------------IEEERKHNRQR-------------LQELSSELSEGQRR----LSNAEKEKSLLQKTLD----- 517
Cdd:TIGR02168 545 grlqavvvenlnaakkaIAFLKQNELGRvtflpldsikgteIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 518 -----------EDEKKID----------ELFHSTQVSEQKQRELTNS-------IRKLEEELLEIKGLLEEKREQLKKSK 569
Cdd:TIGR02168 625 vlvvddldnalELAKKLRpgyrivtldgDLVRPGGVITGGSAKTNSSilerrreIEELEEKIEELEEKIAELEKALAELR 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 570 EQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSI 646
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 647 MILQTQLDSAIQkekncfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYE 726
Cdd:TIGR02168 785 EELEAQIEQLKE------ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 727 ERMK-------KLNMELKKLQGFQQQSEQEVH-------NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEM 792
Cdd:TIGR02168 859 AEIEeleelieELESELEALLNERASLEEALAllrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
730 740
....*....|....*....|....
gi 1720428054 793 ATLRESLLADEKEPYSPPAKLTPK 816
Cdd:TIGR02168 939 DNLQERLSEEYSLTLEEAEALENK 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
454-798 |
2.73e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 2.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 454 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvs 533
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL------- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 534 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI--EALRQEAKRKEKMAKEHlRKLDEEKENLQAEL 611
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEV-SRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 612 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDS--AIQKEKNCFQNMVSKEaYEELVRKSGNCQDDLTQ 689
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEleEELEELEAALRDLESR-LGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 690 ALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKL------NMELKKLQGFQQQSEQEVHNF---DKKLEEM 760
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeeELSLEDVQAELQRVEEEIRALepvNMLAIQE 980
|
330 340 350
....*....|....*....|....*....|....*...
gi 1720428054 761 SNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRES 798
Cdd:TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
171-611 |
2.82e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.84 E-value: 2.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 171 VIQEHQETLKRLSEVWQKV-----------SEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAThrhpptsSE 239
Cdd:PRK02224 242 VLEEHEERREELETLEAEIedlretiaeteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 240 DCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLRE---ETSCVIEKKDKETV 316
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREaveDRREEIEELEEEIE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 317 FLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKID 396
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECG-----QPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 397 CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSkEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSK 476
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 477 IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseQKQRELTNSIRKLEEELLEIKG 556
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL--------AAIADAEDEIERLREKREALAE 620
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720428054 557 LLEEKREQLKKSKEQEKALEEE-----IEALRQEAKRKEKM---AKEHLRKLDEEKENLQAEL 611
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYleqVEEKLDELREERDDLQAEI 683
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
344-803 |
3.52e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.45 E-value: 3.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKL--------------KD 409
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEL--ETLEAEIEDLretiaeterereelAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 410 SLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKD-------LQSQLHKLQKESSKIEEERK 482
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEcrvaaqaHNEEAESLREDADDLEERAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 483 HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKI--------------DELFHSTQVSEQKQRELTNSIRKLE 548
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgdapvdlgnaedflEELREERDELREREAELEATLRTAR 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 549 EELLEIKGLLE---------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAK--EHLRKLDEEKE 605
Cdd:PRK02224 440 ERVEEAEALLEagkcpecgqpvegsphvetieEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEaeDRIERLEERRE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 606 NLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELvrksgncq 684
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-------- 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 685 DDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-----LKKLQGFQQQSEQEVHNFDKKLEE 759
Cdd:PRK02224 592 ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEKLDE 671
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1720428054 760 MSNQvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADE 803
Cdd:PRK02224 672 LREE----RDDLQAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
490-809 |
3.55e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 3.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 490 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 569
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 570 EQEKALEEEIEALRQEAKRKEkmakEHLRKLDEEKENLQAELtsrsshldsslnkynsSQKVIQELNAEIARQKDSIMIL 649
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELE----EDLHKLEEALNDLEARL----------------SHSRIPEIQAELSKLEEEVSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 650 QTQLDSAIQKEKncfqnmvskeayeelvrksgncqdDLTQALEKLTQATSETKSLNRSLqqtQERKAQLEDEIAAYEERM 729
Cdd:TIGR02169 811 EARLREIEQKLN------------------------RLTLEKEYLEKEIQELQEQRIDL---KEQIKSIEKEIENLNGKK 863
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 730 KKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSP 809
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
236-804 |
6.61e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.71 E-value: 6.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 236 TSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKET 315
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 316 VfLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVqNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI 395
Cdd:PRK03918 242 E-LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 396 DCEA--LRAEIQKLKDSLEEAREqLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-LLQDKQKEEVIKDLQSQLHKLQK 472
Cdd:PRK03918 320 EEEIngIEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYEEAKAKKEELeRLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 473 ESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKS---LLQKTLDEDEKK--IDELFHSTQVSEQKQRELTNSIRKL 547
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 548 EEELLEIKGLLEEKRE--QLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKY 625
Cdd:PRK03918 479 RKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKS----LKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 626 NSSQKVIQELNAEIARQKDSIMILQTQLdsaiqkekncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLN 705
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKEL--------------------EELGFESVEELEERLKELEPFYNEYLELKDAE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 706 RSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfqQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQL 785
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
570
....*....|....*....
gi 1720428054 786 REFQEEMATLRESLLADEK 804
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
484-740 |
1.20e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.79 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 484 NRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS--EQKQRELTNSIRKLEEELLEIK---GLL 558
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdEIDVASAEREIAELEAELERLDassDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 559 EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNsSQKVIQELNAE 638
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF-AAALGDAVERE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 639 IARQkdsimiLQTQLDSAIQKEKNCFQNMVS-----KEAYEELVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSL 708
Cdd:COG4913 767 LREN------LEERIDALRARLNRAEEELERamrafNREWPAETADLDADLESLPEYLALLDRLEEDglpeyEERFKELL 840
|
250 260 270
....*....|....*....|....*....|....*..
gi 1720428054 709 QQTQERK-----AQLEDEIAAYEERMKKLNMELKKLQ 740
Cdd:COG4913 841 NENSIEFvadllSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
535-893 |
1.46e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 535 QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEaLRQEAKRKEK-MAKEHLRKLDEEKENLQAELTS 613
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRELELaLLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 614 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayEELVRKSGNCQDDLTQALEK 693
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------QILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 694 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQvlqwQRQHQS 773
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 774 DLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQ 853
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1720428054 854 VKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 893
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-609 |
2.53e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 66.71 E-value: 2.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 399 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 478
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 479 EERKHNRQRLQEL------------------SSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREL 540
Cdd:COG4942 97 AELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428054 541 TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 609
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
432-656 |
3.21e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 66.33 E-value: 3.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 432 AHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL 511
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 512 LQKTLDEDEKKIDELFHSTQVSEQKQREL----TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 587
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428054 588 RKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSA 656
Cdd:COG4942 175 ELEALLAE----LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
518-805 |
1.10e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 518 EDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKK-SKEQEKALE-EEIEALRQEAKRKEKMAKe 595
Cdd:TIGR02169 154 ERRKIIDEIAGVAEFDRKKEKAL-EELEEVEENIERLDLIIDEKRQQLERlRREREKAERyQALLKEKREYEGYELLKE- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 596 hLRKLDEEKENLQAELTSRSSHLDsslnkynSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS--KEAY 673
Cdd:TIGR02169 232 -KEALERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGelEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 674 EELVRKSGNCQDDLTQALEKLTQATSE-------TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS 746
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEidkllaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720428054 747 EQEVHNFDKKLEEMSNQV-------------LQWQRQHQSDLKM-LAAKESQLREFQEEMATLRESLLADEKE 805
Cdd:TIGR02169 384 RDELKDYREKLEKLKREInelkreldrlqeeLQRLSEELADLNAaIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
349-613 |
1.73e-10 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 64.76 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 349 RLHELEKNLMQVQNSLREKEAELEKLQcttkeldtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 428
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRAR--------IELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 429 KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 508
Cdd:pfam05557 75 AELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 509 KSLL---QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE--ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 583
Cdd:pfam05557 155 RQNLekqQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARipELEKELERLREHNKHLNENIENKLLLKEEVEDLK 234
|
250 260 270
....*....|....*....|....*....|
gi 1720428054 584 QEAKRKEKMaKEHLRKLDEEKENLQAELTS 613
Cdd:pfam05557 235 RKLEREEKY-REEAATLELEKEKLEQELQS 263
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
347-805 |
2.00e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 2.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 347 DERLHELEKNLMQ---VQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQ 423
Cdd:PRK03918 175 KRRIERLEKFIKRtenIEELIKEKEKELEEVLREINEISSELPELREELEKL--EKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 424 NLTQSKEEAHLSASSLEDAHRKIENclLQDKQKE-EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 502
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEE--LEEKVKElKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 503 SNAEKEKSLLQKT---LDEDEKKIDELFHSTQVSEqKQRELTNSIRKLEEELL-----EIKGLLEEKREQLKKSKEQEKA 574
Cdd:PRK03918 331 KELEEKEERLEELkkkLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 575 LEEEIEALRQEAKRKEKmAKEHLRKLDEEKENLQAELTsrSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLD 654
Cdd:PRK03918 410 ITARIGELKKEIKELKK-AIEELKKAKGKCPVCGRELT--EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 655 SAIQKEKNCFQNMVSKEAYEELVRK-SGNCQDDLTQA-------LEKLTQATSETKSLNRSLQQTQE---RKAQLEDEIA 723
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKlKKYNLEELEKKaeeyeklKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 724 AYEERMKKLNMELKKLqGFqqQSEQEVHNFDKKLEEMSNQVLQwqrqhqsdlkmLAAKESQLREFQEEMATLRESLLADE 803
Cdd:PRK03918 567 ELEEELAELLKELEEL-GF--ESVEELEERLKELEPFYNEYLE-----------LKDAEKELEREEKELKKLEEELDKAF 632
|
..
gi 1720428054 804 KE 805
Cdd:PRK03918 633 EE 634
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
318-551 |
2.19e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 2.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 318 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidc 397
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 398 eaLRAEIQKLKDSLeeaREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 477
Cdd:COG4942 95 --LRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428054 478 EEErkhnRQRLQELSSELSEGQRRLSNAEKEKsllQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEEL 551
Cdd:COG4942 170 EAE----RAELEALLAELEEERAALEALKAER---QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-609 |
5.92e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.40 E-value: 5.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 396 DCEALRAEIQKLKDS---LEEAREQLKVsdqnLTQSKE--EAHLSASSLEDAHRKIENcLLQDKQKEEVIKDLQSQLHKL 470
Cdd:COG4913 226 AADALVEHFDDLERAheaLEDAREQIEL----LEPIRElaERYAAARERLAELEYLRA-ALRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 471 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE-KEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEE 549
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEER-------ERRRARLEALLAALGL 373
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 550 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 609
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
171-805 |
9.44e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 9.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 171 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNklacsnslvLEREEALIKLQAEFASYTATHRhpptsseDCEDITKILKH 250
Cdd:TIGR02169 192 IIDEKRQQLERLRREREKAERYQALLKEKRE---------YEGYELLKEKEALERQKEAIER-------QLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 251 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMkleldlhglrEETSCVIEKKDKETVFLQYRLQDLQQQYT 330
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI----------GELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 331 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKidceaLRAEIQKLKDS 410
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD-----YREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 411 LEE---AREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENcLLQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQR 487
Cdd:TIGR02169 401 INElkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEE-EKEDKALE--IKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 488 LQELSSELSEGQRRLSNAEKEKSLLQKTL--------------------------------------------------D 517
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQARASEERVrggraveevlkasiqgvhgtvaqlgsvgeryataievaagnrlnnvvvedD 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 518 EDEKKIDEL-----------------------------------------------------FHSTQVSE--QKQRELTN 542
Cdd:TIGR02169 558 AVAKEAIELlkrrkagratflplnkmrderrdlsilsedgvigfavdlvefdpkyepafkyvFGDTLVVEdiEAARRLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 543 SIR--KLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDS 620
Cdd:TIGR02169 638 KYRmvTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER-----------LEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 621 SLNKYNSS-------QKVIQELNAEIARQKDSIMILQTQLDSAIQKekncfqnmvsKEAYEELVRKSGNCQDDLTQALEK 693
Cdd:TIGR02169 707 LSQELSDAsrkigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----------IENVKSELKELEARIEELEEDLHK 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 694 LTQATSETK-SLNRS-LQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQH 771
Cdd:TIGR02169 777 LEEALNDLEaRLSHSrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
730 740 750
....*....|....*....|....*....|....
gi 1720428054 772 QSDLKMLAAKESQLREFQEEMATLRESLLADEKE 805
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
308-799 |
1.44e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 308 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSL----------REKEAELEKLQCT 377
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlkkkiqknKSLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 378 TKELDTSLQEARQSTSKIDCEALRAE--IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENclLQDKQ 455
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQtqLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISD--LNNQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 456 KEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQ 535
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 536 KQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEaKRKEKMAKEHLRKLDEEKENLQAELTSRS 615
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET-IIKNNSEIKDLTNQDSVKELIIKNLDNTR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 616 SHLdsslnkynssQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayeelvrksgncqddlTQALEKLT 695
Cdd:TIGR04523 464 ESL----------ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK--------------------KELEEKVK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 696 QATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKlqgfqQQSEQEVHNFDKKLEEMSNQ---VLQWQRQHQ 772
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTqksLKKKQEEKQ 588
|
490 500
....*....|....*....|....*..
gi 1720428054 773 SDLKMLAAKESQLREFQEEMATLRESL 799
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
344-893 |
1.96e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSD- 422
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA-----EEARKAD-----ELKKAEEKKKADEAKKAEEKKKADEa 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 423 QNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 502
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 503 SNAEKEKSLlQKTLDEDEKKIDELfHSTQVSEQKQREL---TNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEEI 579
Cdd:PTZ00121 1388 EEKKKADEA-KKKAEEDKKKADEL-KKAAAAKKKADEAkkkAEEKKKADE--------AKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 580 EALRQEAKRKEKMAKEHLRKLDEEK---ENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDsimilqtQLDSA 656
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAkkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD-------EAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 657 IQKEKNCFQNMVSKEAYEELVRKSGNCQ--DDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNM 734
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 735 ELKKLQGFQQQSEQEvhnfdKKLEEMSNQVLQWQRQHQSDLKmlaaKESQLREFQEEMATLRESLLADEKEpysppaKLT 814
Cdd:PTZ00121 1611 EAKKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKK----KAEELKKAEEENKIKAAEEAKKAEE------DKK 1675
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428054 815 PKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 893
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
419-595 |
2.72e-09 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 60.56 E-value: 2.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 419 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 498
Cdd:PRK12704 27 KIAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLRNE---FEKELRERRNELQKLEKRL--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 499 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEkaLEE 577
Cdd:PRK12704 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLtAEEAKEILLEKVEEE--ARH 169
|
170
....*....|....*...
gi 1720428054 578 EIEALrqeAKRKEKMAKE 595
Cdd:PRK12704 170 EAAVL---IKEIEEEAKE 184
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
322-759 |
2.74e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 322 LQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIdcEALR 401
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK---KENQSYKQEIKNLESQI--NDLE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 402 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER 481
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 482 KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEK 561
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL-------KEKIEKLESEKKEKESKISDLEDELNKD 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 562 REQLKKS--KEQEKALEEEIEALRQE---AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELN 636
Cdd:TIGR04523 551 DFELKKEnlEKEIDEKNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 637 AEIARQKDSIMILQTQLDS---AIQKEKNCFQNMVSKEayEELVRKSgncqDDLTQALEKLTQATSETKSLNRSLQQTQE 713
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQikeTIKEIRNKWPEIIKKI--KESKTKI----DDIIELMKDWLKELSLHYKKYITRMIRIK 704
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1720428054 714 RKAQLEdeiaayeERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEE 759
Cdd:TIGR04523 705 DLPKLE-------EKYKEIEKELKKLDEFSKELENIIKNFNKKFDD 743
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
491-731 |
3.22e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 491 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 570
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 571 QEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQ 650
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 651 TQLDSAIQKEKNcfqnmvSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMK 730
Cdd:COG4942 164 ALRAELEAERAE------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
.
gi 1720428054 731 K 731
Cdd:COG4942 238 A 238
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
416-761 |
3.25e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 3.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 416 EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER---KHNRQRLQELS 492
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 493 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKKSKEQE 572
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 573 KALEEEIEALRQEAKRKEKMaKEHLRKLDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKD-SIMILQT 651
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRL----EELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 652 QLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQD---DLTQALEKLTQATSETKSLNRSLqqTQERKAQLedeIAAYEER 728
Cdd:PRK03918 392 ELEELEKAKEEI------EEEISKITARIGELKKeikELKKAIEELKKAKGKCPVCGREL--TEEHRKEL---LEEYTAE 460
|
330 340 350
....*....|....*....|....*....|...
gi 1720428054 729 MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMS 761
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKES 493
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
453-659 |
1.05e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 59.26 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 453 DKQKEEVIKDLQSQLHKLQ--KESSKI---EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 527
Cdd:COG3206 181 EEQLPELRKELEEAEAALEefRQKNGLvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 528 HSTQVSEqkqreltnsirkLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRkekMAKEHLRKLDEEKENL 607
Cdd:COG3206 261 QSPVIQQ------------LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEAL 325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1720428054 608 QAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQK 659
Cdd:COG3206 326 QAREAS----LQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQR 373
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
460-611 |
2.25e-08 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 55.70 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 460 IKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfHSTQVSEQKQRE 539
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV-RNNKEYEALQKE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428054 540 LTN---SIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 611
Cdd:COG1579 98 IESlkrRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
586-811 |
2.85e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.15 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 586 AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfq 665
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER--------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 666 nmvsKEAYEELVR---KSGNCQDDLTQAL--EKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 740
Cdd:COG3883 85 ----REELGERARalyRSGGSVSYLDVLLgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 741 GFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPA 811
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
364-740 |
5.52e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 5.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 364 LREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSasSLEDAH 443
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEEL--EELEAELEELREELEKLEKLLQLLPLYQELEALEAELA--ELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 444 RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERK-HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKK 522
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 523 IDELFHSTQVSEQKQR----------------------ELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 580
Cdd:COG4717 229 LEQLENELEAAALEERlkearlllliaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 581 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 660
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 661 KNCFQnmvsKEAYEELVRKSGNCQDDLTQALEKLTQATSETkslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 740
Cdd:COG4717 389 AALEQ----AEEYQELKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELE 459
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
486-728 |
6.02e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 6.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 486 QRLQELSSELSEGQRRLSNAEKEKSLLQKtLDEDEKKIDELFhsTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL 565
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAAR--ERLAELEYLRAALRLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 566 KKSKEQEKALEEEIEALRQEAKRkekmAKEHLRKLD-EEKENLQAEltsrsshldsslnkynssqkvIQELNAEIARQKD 644
Cdd:COG4913 305 ARLEAELERLEARLDALREELDE----LEAQIRGNGgDRLEQLERE---------------------IERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 645 SIMILQTQLDSAiqkeknCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKslnRSLQQTQERKAQLEDEIAA 724
Cdd:COG4913 360 RRARLEALLAAL------GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLRRELRELEAEIAS 430
|
....
gi 1720428054 725 YEER 728
Cdd:COG4913 431 LERR 434
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
172-733 |
6.60e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 172 IQEHQETLKRLSEvwqKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHpptSSEDCEDITKILKHL 251
Cdd:COG1196 248 LEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR---LEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 252 QEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTE 331
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 332 SQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI-DCEALRAEIQKLKDS 410
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLaELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 411 LEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQ---------DKQKEEVIKD------LQSQLHKLQKESS 475
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligvEAAYEAALEAalaaalQNIVVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 476 KIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDE-----LFHSTQVSEQKQRELTNS----IRK 546
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAdaryyVLGDTLLGRTLVAARLEAalrrAVT 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 547 LEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYN 626
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 627 SSQKVIQELNAEIARQkdsimiLQTQLDSAIQKEKNCFQNMVSKEAYEELVRKsgncQDDLTQALEKL----TQATSETK 702
Cdd:COG1196 722 EEEALEEQLEAEREEL------LEELLEEEELLEEEALEELPEPPDLEELERE----LERLEREIEALgpvnLLAIEEYE 791
|
570 580 590
....*....|....*....|....*....|.
gi 1720428054 703 SLNRSLQQTQERKAQLEDEIAAYEERMKKLN 733
Cdd:COG1196 792 ELEERYDFLSEQREDLEEARETLEEAIEEID 822
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
352-789 |
7.05e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 7.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 352 ELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQ-----STSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLT 426
Cdd:pfam15921 441 ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKvveelTAKKMTLESSERTVSDLTASLQEKERAIEATNAEIT 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 427 QSKEEAHLSASSLEDAhrkiencllqdKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE 506
Cdd:pfam15921 521 KLRSRVDLKLQELQHL-----------KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQ 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 507 KEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEa 586
Cdd:pfam15921 590 VEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE- 668
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 587 krkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQelnAEIARQKDSIMILQTQLDSAIQkekncfqn 666
Cdd:pfam15921 669 ----------LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ---SELEQTRNTLKSMEGSDGHAMK-------- 727
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 667 mVSKEAYEELVRKSGNCqDDLTQALEKLTQATSETkslNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS 746
Cdd:pfam15921 728 -VAMGMQKQITAKRGQI-DALQSKIQFLEEAMTNA---NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1720428054 747 EQEVHNFDKKLEEMSNQVLQW----QRQHQSDLKMLAAKESQLREFQ 789
Cdd:pfam15921 803 KEKVANMEVALDKASLQFAECqdiiQRQEQESVRLKLQHTLDVKELQ 849
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
381-616 |
7.12e-08 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 56.19 E-value: 7.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 381 LDTSLQEARQSTSKIDceaLRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVI 460
Cdd:pfam05667 261 LAGTEATSGASRSAQD---LAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETEEELQQQREEEL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 461 KDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqRRLSNAEKEKSLLQKT-----LDEDEKKIDELFHSTQVSEQ 535
Cdd:pfam05667 338 EELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEE--LKEQNEELEKQYKVKKktldlLPDAEENIAKLQALVDASAQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 536 KQRELTNSIRKLEEELL-EIKGLLEEKREQLKKSK---EQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAEl 611
Cdd:pfam05667 416 RLVELAGQWEKHRVPLIeEYRALKEAKSNKEDESQrklEEIKELREKIKEVAEEAKQKEELYKQ----LVAEYERLPKD- 490
|
....*
gi 1720428054 612 TSRSS 616
Cdd:pfam05667 491 VSRSA 495
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
453-764 |
1.06e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 55.70 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 453 DKQKEEVIKDLQsQLHKLQKESSKIEEERKHNRqRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE-DEKKIDELfhstq 531
Cdd:PRK05771 15 KSYKDEVLEALH-ELGVVHIEDLKEELSNERLR-KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvSVKSLEEL----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 532 vseqkqreltnsIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALrqeakrkekmakEHLRKLDEEKENLQael 611
Cdd:PRK05771 88 ------------IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL------------EPWGNFDLDLSLLL--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 612 tsRSSHLDS-----SLNKYNSSQKVIQELNAEIARQKdsimilqtqldsaiqKEKNCFQNMVSKEAYEELvrksgncqDD 686
Cdd:PRK05771 141 --GFKYVSVfvgtvPEDKLEELKLESDVENVEYISTD---------------KGYVYVVVVVLKELSDEV--------EE 195
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428054 687 LTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNmelKKLQGFQQQSEQEVHNFDKKLEEMSNQV 764
Cdd:PRK05771 196 ELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELA---KKYLEELLALYEYLEIELERAEALSKFL 270
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
372-707 |
1.14e-07 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 56.06 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 372 EKLQCTTKELDTSLQEARQSTSKiDCEALRAEIQKlkdsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIE---- 447
Cdd:PLN02939 71 ENGQLENTSLRTVMELPQKSTSS-DDDHNRASMQR-------DEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQnaek 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 448 NCLLQDKQKEEVIKDLQsqlhklqkessKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 527
Cdd:PLN02939 143 NILLLNQARLQALEDLE-----------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 528 HSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA---LEEE---IEALRQEAKRKEKMAKEHLRKLD 601
Cdd:PLN02939 212 IRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERvfkLEKErslLDASLRELESKFIVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 602 --------EEKENLQAELTSRSSHLDSS---LNKYNSSQKVIQELNAEIARQKDS------IMILQTQLDSAIQKEKNCF 664
Cdd:PLN02939 292 plqydcwwEKVENLQDLLDRATNQVEKAalvLDQNQDLRDKVDKLEASLKEANVSkfssykVELLQQKLKLLEERLQASD 371
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720428054 665 QNMVSK-EAYEELVRKSgncQDDLTQALEKltqatSETKSLNRS 707
Cdd:PLN02939 372 HEIHSYiQLYQESIKEF---QDTLSKLKEE-----SKKRSLEHP 407
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
346-887 |
1.71e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 346 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNL 425
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNK-----DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 426 TQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNA 505
Cdd:TIGR04523 106 SKINSE----------------------------IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 506 EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKRE---QLKKSKEQEKALEEEIEAL 582
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 583 RQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSImilqTQLDSAIQKEKN 662
Cdd:TIGR04523 238 QQE-----------INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL----NQLKSEISDLNN 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 663 CFQNMVSKEAYEELVRKsgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 742
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQ----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 743 QQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETC--R 820
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIikN 458
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 821 HHRENDQIMNNVEQWAKEQKIANEKLGNK---LREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEE 887
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKqkeLKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
348-594 |
2.13e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 54.93 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 348 ERLHELekNLMQVQNSLREKEAEleklqcttkeldtSLQEARqstskidceALRAEIQKLKDSLEEAREQLKVSDqnltq 427
Cdd:PRK05771 23 EALHEL--GVVHIEDLKEELSNE-------------RLRKLR---------SLLTKLSEALDKLRSYLPKLNPLR----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 428 sKEEAHLSASSLEDAHRKIENCLLQDkqkEEVIKDLQSQLHKLQKESSKIEEERKhNRQRLQELSSELSEGQR------- 500
Cdd:PRK05771 74 -EEKKKVSVKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIE-RLEPWGNFDLDLSLLLGfkyvsvf 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 501 --RLSNAEKEKSLLQK--------------------TLDEDEKKIDELFHSTQVSEQK---QRELTNSIRKLEEELLEIK 555
Cdd:PRK05771 149 vgTVPEDKLEELKLESdvenveyistdkgyvyvvvvVLKELSDEVEEELKKLGFERLEleeEGTPSELIREIKEELEEIE 228
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1720428054 556 GLLEEKREQLKKSKEQE----KALEEEIEALRQEAKRKEKMAK 594
Cdd:PRK05771 229 KERESLLEELKELAKKYleelLALYEYLEIELERAEALSKFLK 271
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
457-630 |
2.15e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.07 E-value: 2.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 457 EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDE----------- 525
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErreelgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 526 -------------LFHSTQVSE-----QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 587
Cdd:COG3883 95 lyrsggsvsyldvLLGSESFSDfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1720428054 588 RKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 630
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
395-571 |
3.45e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 54.09 E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 395 IDCEALRAEIQKLKdSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkiencllqdkQKEEVIKDLQSQLHKLQKES 474
Cdd:COG2433 363 VDRDEVKARVIRGL-SIEEALEELIEKELPEEEPEAEREKEHEERELT------------EEEEEIRRLEEQVERLEAEV 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 475 SKIEEERKHNRQRLQELSSELSEGQRR----------LSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNsI 544
Cdd:COG2433 430 EELEAELEEKDERIERLERELSEARSEerreirkdreISRLDREIERLERELEEERERIEEL-------KRKLERLKE-L 501
|
170 180
....*....|....*....|....*....
gi 1720428054 545 RKLE--EELLEIKGLLEEKREQLKKSKEQ 571
Cdd:COG2433 502 WKLEhsGELVPVKVVEKFTKEAIRRLEEE 530
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
172-582 |
3.48e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 3.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 172 IQEHQETLKRLSEVWQKVSEQDDLIQE----LRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCEDItki 247
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREeaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF--- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 248 LKHLQEQKDsqclhveEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETS---CVIEKKDKETVFLQYRLQD 324
Cdd:PRK02224 414 LEELREERD-------ELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSphvETIEEDRERVEELEAELED 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 325 LQQQYT------ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARqstskidce 398
Cdd:PRK02224 487 LEEEVEeveerlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR--------- 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 399 alrAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassleDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 478
Cdd:PRK02224 558 ---EAAAEAEEEAEEAREEVAELNSKLAELKERI--------ESLERIRTLLAAIADAEDEIERLREKREALAELNDERR 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 479 EERKHNRQRLQELSSELSEGqrRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLL 558
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEA--RIEEAREDKERAEEYLEQVEEKLDEL-------REERDDLQAEIGAVENELEELEELR 697
|
410 420
....*....|....*....|....
gi 1720428054 559 EEkREQLKKSKEQEKALEEEIEAL 582
Cdd:PRK02224 698 ER-REALENRVEALEALYDEAEEL 720
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
237-586 |
3.85e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 237 SSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscviekkdketv 316
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA------------- 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 317 flqyrLQDLQQQYTESQklslkkdkllqdkderlheleknlmqvqnsLREKEAELEKLQCTTKELDTSLQEARQSTSKID 396
Cdd:TIGR02169 781 -----LNDLEARLSHSR------------------------------IPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 397 CEA--LRAEIQKLKDSLEEAREQLKvsdqnltQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKES 474
Cdd:TIGR02169 826 LEKeyLEKEIQELQEQRIDLKEQIK-------SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 475 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQReLTNSIRKLE------ 548
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR-VEEEIRALEpvnmla 977
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1720428054 549 ----EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEA 586
Cdd:TIGR02169 978 iqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
508-649 |
4.42e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 53.71 E-value: 4.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 508 EKSLLQKTLDEDEKKIDELFHSTQVSEQKQREltnsIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 587
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEE----IRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEER 458
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720428054 588 RKEKMAKEhLRKLDEEKENLQAELtsrsshldsslnkyNSSQKVIQELNAEIARQKDSIMIL 649
Cdd:COG2433 459 REIRKDRE-ISRLDREIERLEREL--------------EEERERIEELKRKLERLKELWKLE 505
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
309-805 |
4.45e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 4.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 309 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERL-HELEKNLMQVQNSLREKEAELEKLQCTTKELD--TSL 385
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLtKELEDIKMSLQRSMSTQKALEEDLQIATKTICqlTEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 386 QEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKE---EVIKD 462
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEvelEELKK 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 463 LQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN 542
Cdd:pfam05483 413 ILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTA 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 543 SIRKL---------------------EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLD 601
Cdd:pfam05483 493 HCDKLllenkeltqeasdmtlelkkhQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 602 EEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQlDSAIQKEKNCFQNMVSKEAYEELVRKSG 681
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK-GSAENKQLNAYEIKVNKLELELASAKQK 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 682 NCQDDLTQALEKLTQATSETKslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQqqsEQEVHNFDKKLEEMS 761
Cdd:pfam05483 652 FEEIIDNYQKEIEDKKISEEK----LLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALM---EKHKHQYDKIIEERD 724
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1720428054 762 NQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 805
Cdd:pfam05483 725 SELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
344-583 |
4.86e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.76 E-value: 4.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkelDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQ 423
Cdd:PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALK------DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 424 NL----TQSkEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDlqSQLHKLQKESSKIEEERKHNRQRLQ--ELSSELSE 497
Cdd:PRK11281 150 QLvslqTQP-ERAQAALYANSQRLQQIRNLLKGGKVGGKALRP--SQRVLLQAEQALLNAQNDLQRKSLEgnTQLQDLLQ 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 498 GQRRLSNA-----EKEKSLLQ-----KTLDEDEKKIDELfhstQVSEQKQRELTNSI--------RKLEEELLEIKGLLE 559
Cdd:PRK11281 227 KQRDYLTAriqrlEHQLQLLQeainsKRLTLSEKTVQEA----QSQDEAARIQANPLvaqeleinLQLSQRLLKATEKLN 302
|
250 260 270
....*....|....*....|....*....|.
gi 1720428054 560 E-------KREQLKKSKEQEKALEEEIEALR 583
Cdd:PRK11281 303 TltqqnlrVKNWLDRLTQSERNIKEQISVLK 333
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
516-749 |
9.68e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 9.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 516 LDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKE 595
Cdd:COG3883 18 IQAKQKELSEL-------QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 596 HLRKLDEEKEN---LQAELTSRSshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmvskea 672
Cdd:COG3883 91 RARALYRSGGSvsyLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL------------ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428054 673 yEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQE 749
Cdd:COG3883 157 -AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
467-803 |
9.87e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 9.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 467 LHKLQKESSKIEEERKHNRQrLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKID--ELFHSTQVSEQKQRELTNSI 544
Cdd:COG4717 70 LKELKELEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 545 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNK 624
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 625 YNS--SQKVIQELNAEIARQKDSIMILQTQL----------------------------DSAIQKEKNCFQNMVSKEAYE 674
Cdd:COG4717 229 LEQleNELEAAALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgllaLLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 675 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMkklnmelkKLQGFQQQSEQEVHNFD 754
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--------QLEELEQEIAALLAEAG 380
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1720428054 755 KKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADE 803
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE 429
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
344-799 |
1.08e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLMQVQNSLREkeaeLEKLQCTTKELDTSLQEARQSTSKIDCEA--LRAEIQKLKDSLEEAREQLKVS 421
Cdd:pfam01576 8 QAKEEELQKVKERQQKAESELKE----LEKKHQQLCEEKNALQEQLQAETELCAEAeeMRARLAARKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 422 -------DQNLTQSKEEAHLSASSLEdAHRKIENCLLQDKQKEEV-----IKDLQSQLHKLQKESSKIEEERKHNRQRLQ 489
Cdd:pfam01576 84 leeeeerSQQLQNEKKKMQQHIQDLE-EQLDEEEAARQKLQLEKVtteakIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 490 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 569
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 570 EQEKALEEEIE---ALRQEAKRKEKMAKEHLRKLDEEKEN--------------LQAELTSRSSHLDSSLNKYNSSQKVI 632
Cdd:pfam01576 243 EELQAALARLEeetAQKNNALKKIRELEAQISELQEDLESeraarnkaekqrrdLGEELEALKTELEDTLDTTAAQQELR 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 633 QELNAEIARQKDSI----MILQTQLDSAIQKEKNCFQNMvsKEAYEELVRKSGNCQ----------DDLTQALEKLTQAT 698
Cdd:pfam01576 323 SKREQEVTELKKALeeetRSHEAQLQEMRQKHTQALEEL--TEQLEQAKRNKANLEkakqalesenAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 699 SET----KSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSD 774
Cdd:pfam01576 401 QDSehkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
490 500
....*....|....*....|....*
gi 1720428054 775 LKMLAAKESQLREFQEEMATLRESL 799
Cdd:pfam01576 481 TRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
352-775 |
1.49e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.36 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 352 ELEKNLMQVQNSLREKEAE-LEKLQCTTKELD---TSLQEARQSTSKID-----CEALRAEIQKLKDSLEEAREQLKVSD 422
Cdd:PRK10929 27 QITQELEQAKAAKTPAQAEiVEALQSALNWLEerkGSLERAKQYQQVIDnfpklSAELRQQLNNERDEPRSVPPNMSTDA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 423 QNltqskEEAHLSASSLEDAHRKIENclLQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 502
Cdd:PRK10929 107 LE-----QEILQVSSQLLEKSRQAQQ--EQDRARE--ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 503 SNAEkekSLLQKTldedekKIDELFHStQVSEQKQRELTnsirKLEEElleikgLLEEKREQLKKskeQEKALEEEIEAL 582
Cdd:PRK10929 178 LQAE---SAALKA------LVDELELA-QLSANNRQELA----RLRSE------LAKKRSQQLDA---YLQALRNQLNSQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 583 RQeakRKEKMAKEHLRKLDEEKENLQAELTSrsshldsslnKYNSSQKVIQELNAEiARQKDSIMILQTQLDSAIQKekn 662
Cdd:PRK10929 235 RQ---REAERALESTELLAEQSGDLPKSIVA----------QFKINRELSQALNQQ-AQRMDLIASQQRQAASQTLQ--- 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 663 cfqnmvskeayeelVRksgncqddltQALEKLT---QATSETKSLNRSLQQTQER------KAQLEDEIAayEERMKKLN 733
Cdd:PRK10929 298 --------------VR----------QALNTLReqsQWLGVSNALGEALRAQVARlpempkPQQLDTEMA--QLRVQRLR 351
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1720428054 734 MElkKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 775
Cdd:PRK10929 352 YE--DLLNKQPQLRQIRQADGQPLTAEQNRILDAQLRTQREL 391
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
454-808 |
1.92e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.00 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 454 KQKEEVIKDLQSQLHKLQKESSKIEEER----------------KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQK--- 514
Cdd:COG5022 813 RSYLACIIKLQKTIKREKKLRETEEVEFslkaevliqkfgrslkAKKRFSLLKKETIYLQSAQRVELAERQLQELKIdvk 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 515 -------TLDEDEKKIDELFHSTQVSEQKQRE-LTNSIRKLEEELLEIKglLEEKREQLKKSKEQEKALEEEIEALRQEA 586
Cdd:COG5022 893 sisslklVNLELESEIIELKKSLSSDLIENLEfKTELIARLKKLLNNID--LEEGPSIEYVKLPELNKLHEVESKLKETS 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 587 KRKEKMAKEH------LRKLDEEKENLQAELTSRSSHLDS---SLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 657
Cdd:COG5022 971 EEYEDLLKKStilvreGNKANSELKNFKKELAELSKQYGAlqeSTKQLKELPVEVAELQSASKIISSESTELSILKPLQK 1050
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 658 QKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-- 735
Cdd:COG5022 1051 LKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLqe 1130
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 736 ----LKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQR--------QHQSDLKMLAAKESQLREFQEEMATLRESLLADE 803
Cdd:COG5022 1131 iskfLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALpspppfaaLSEKRLYQSALYDEKSKLSSSEVNDLKNELIALF 1210
|
....*
gi 1720428054 804 KEPYS 808
Cdd:COG5022 1211 SKIFS 1215
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
364-608 |
2.87e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 364 LREKEAELEKLQCTTK-ELDTSLQEARQSTSKIDCEALR-AEIQKLKDSLEEAREQLKVSDQnltQSKEEAHLSASSLED 441
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKaEEAKKADEAKKAEEAKKADEAKkAEEKKKADELKKAEELKKAEEK---KKAEEAKKAEEDKNM 1578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 442 AHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHN----------RQRLQELSSELSEGQRRLSNAEKE--- 508
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKaeelkkaeeeKKKVEQLKKKEAEEKKKAEELKKAeee 1658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 509 ----KSLLQKTLDEDEKKIDELfhstQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKAlEEEIEALRQ 584
Cdd:PTZ00121 1659 nkikAAEEAKKAEEDKKKAEEA----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAE 1733
|
250 260
....*....|....*....|....*..
gi 1720428054 585 EAKRK---EKMAKEHLRKLDEEKENLQ 608
Cdd:PTZ00121 1734 EAKKEaeeDKKKAEEAKKDEEEKKKIA 1760
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
344-641 |
3.07e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQ----STSKIDCEALRAEIQklkdSLEEAREQLK 419
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVASAEREIA----ELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 420 VSDQNLTQSKEEAhlsassledahrkiencllqdKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELsselsegQ 499
Cdd:COG4913 682 ASSDDLAALEEQL---------------------EELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL-------Q 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 500 RRLSNAEKEKSLLQKTLdedekkIDELFHS---TQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKS-KEQEKAL 575
Cdd:COG4913 734 DRLEAAEDLARLELRAL------LEERFAAalgDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREwPAETADL 807
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428054 576 EEEIEALRQEAKRKEKMAKEHL-RKLDEEKENLQAELTSRSSHLDSSLNK-YNSSQKVIQELNAEIAR 641
Cdd:COG4913 808 DADLESLPEYLALLDRLEEDGLpEYEERFKELLNENSIEFVADLLSKLRRaIREIKERIDPLNDSLKR 875
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
171-791 |
3.12e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 171 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLA-CSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCE-DITKIL 248
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRArIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEqQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 249 KHLQEQKDSQCLHVEEYQNLVKDlrmelEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQyRLQDLQQQ 328
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQ-----QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ-HIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 329 YTESQKLSLKKDKLLQDKDERLHELEKnLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEAlRAEIQKLK 408
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDT-RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE-KIHLQESA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 409 DSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAH---------------------------RKIENCLLQDKQKEEVIK 461
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcgscihpnparqdidnpgpltRRMQRGEQTYAQLETSEE 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 462 DLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT 541
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 542 NSIRK------LEEELLEIKGLLEEKREQLKKSKEQEKAL-----EEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 610
Cdd:TIGR00618 626 DLQDVrlhlqqCSQELALKLTALHALQLTLTQERVREHALsirvlPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 611 LTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsAIQKEKNCFQNMVSKEAYEELVRksgncqddLTQA 690
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVTA--------ALQT 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 691 LEKLTQATSETKSLNRSLQQTQERKAQLEDEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ 770
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEI---GQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
650 660
....*....|....*....|.
gi 1720428054 771 HQSDLKMLAAKESQLREFQEE 791
Cdd:TIGR00618 854 YEECSKQLAQLTQEQAKIIQL 874
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
437-797 |
4.51e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 4.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 437 SSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS---EGQRRLSNAEKEKSLLQ 513
Cdd:PRK02224 187 GSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 514 KTLDEDEKKIDELfhSTQVSEQKQRELT-----------------------NSIRKLEEELLEIKGLLEEKREQLKKSKE 570
Cdd:PRK02224 265 ETIAETEREREEL--AEEVRDLRERLEEleeerddllaeaglddadaeaveARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 571 QEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDsslnkynssqkviqELNAEIARQKDSIMILQ 650
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAE----LESELEEAREAVEDRREEIE--------------ELEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 651 TQLDSAiqkekncfqnmvskEAYEELVRksgncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQ---------LEDE 721
Cdd:PRK02224 405 VDLGNA--------------EDFLEELR------EERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 722 -----IAAYEERMKKLNMELKKLQGfQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR 796
Cdd:PRK02224 465 phvetIEEDRERVEELEAELEDLEE-EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
.
gi 1720428054 797 E 797
Cdd:PRK02224 544 E 544
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
454-616 |
4.62e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 4.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 454 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE----------DEKKI 523
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSYL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 524 DELFHSTQVSE------------QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK----EQEKALE---EEIEALRQ 584
Cdd:COG3883 106 DVLLGSESFSDfldrlsalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKaeleAAKAELEaqqAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|..
gi 1720428054 585 EAKRKEKMAKEHLRKLDEEKENLQAELTSRSS 616
Cdd:COG3883 186 QLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
520-735 |
6.32e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 6.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 520 EKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKehLRK 599
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ--LLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 600 LDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsaiqkekncfqnmvskeayEELVRK 679
Cdd:COG4717 130 LYQELEALEAEL----AELPERLEELEERLEELRELEEELEELEAELAELQEELE-------------------ELLEQL 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428054 680 SGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME 735
Cdd:COG4717 187 SLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
684-906 |
7.36e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 7.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 684 QDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKL------ 757
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaelrae 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 758 -----EEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQimNNV 832
Cdd:COG4942 99 leaqkEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER--AEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428054 833 EQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIE--EKKLKAGNPRICVKAFPPNK 906
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAERTPAAGFAALK 252
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
348-589 |
1.01e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 49.30 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 348 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT-SLQEARQstskidcEALRAEIQKLKDSlEEAREQLKVSDQNLT 426
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEAaALQPGEE-------EELEEERRRLSNA-EKLREALQEALEALS 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 427 qskeEAHLSASSLedahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEerkhNRQRLQELSSELSEGQRRLSNae 506
Cdd:COG0497 237 ----GGEGGALDL--------------------LGQALRALERLAEYDPSLAE----LAERLESALIELEEAASELRR-- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 507 kekslLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKL---EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 583
Cdd:COG0497 287 -----YLDSLEFDPERLEEV-------EERLALLRRLARKYgvtVEELLAYAEELRAELAELENSDERLEELEAELAEAE 354
|
....*.
gi 1720428054 584 QEAKRK 589
Cdd:COG0497 355 AELLEA 360
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
108-700 |
1.05e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 108 QQELEfrtqELQASYCSLLQYQSILEKQTSDLLVLHRHCKLKEDEDpenkgdhpkvriytspcvIQEHQETLKRLSEVWQ 187
Cdd:COG1196 280 ELELE----EAQAEEYELLAELARLEQDIARLEERRRELEERLEEL------------------EEELAELEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 188 KVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFAsytathrhpptssEDCEDITKILKHLQEQKDSQclhvEEYQN 267
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA-------------EAEEELEELAEELLEALRAA----AELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 268 LVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETScVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKD 347
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 348 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQ 427
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 428 SKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKhnRQRLQELSSELSEGQRRLSNAEK 507
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR--YYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 508 EKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 587
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 588 RKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARqkdsimiLQTQLDS--AIqkekncfq 665
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER-------LEREIEAlgPV-------- 782
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1720428054 666 NMVSKEAYEE-------LVRKsgncQDDLTQALEKLTQATSE 700
Cdd:COG1196 783 NLLAIEEYEEleerydfLSEQ----REDLEEARETLEEAIEE 820
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
478-800 |
1.46e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.28 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 478 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS---IRKLEEELLEI 554
Cdd:TIGR01612 529 DIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEiiyINKLKLELKEK 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 555 KGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELtsrSSHLDSSLNK-YNSSQKVIQ 633
Cdd:TIGR01612 609 IKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL---SKIYEDDIDAlYNELSSIVK 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 634 ELNAEIARQKDSIMILQTQLDsaiqKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE-TKSLNRSLQQTQ 712
Cdd:TIGR01612 686 ENAIDNTEDKAKLDDLKSKID----KEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEiNKDLNKILEDFK 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 713 ERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVhNFDKKLEEMSNQVLQWQRQHqsdLKMLAAKESQLREFQEEM 792
Cdd:TIGR01612 762 NKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQI-NIDNIKDEDAKQNYDKSKEY---IKTISIKEDEIFKIINEM 837
|
....*...
gi 1720428054 793 ATLRESLL 800
Cdd:TIGR01612 838 KFMKDDFL 845
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
348-799 |
1.46e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 348 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLkvsdQNLTQ 427
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL----DELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 428 SKEEAhlSASSLEDAHRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELsegQRRLSNAEK 507
Cdd:COG4913 331 QIRGN--GGDRLEQLEREIE-------RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA---AALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 508 EKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEE----KREQLK--------KSKEQ---- 571
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEalglDEAELPfvgelievRPEEErwrg 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 572 --EKAL---------EEE-----IEALRQEAKR--------KEKMAKEHLRKLDEE--------KEN-----LQAELTSR 614
Cdd:COG4913 479 aiERVLggfaltllvPPEhyaaaLRWVNRLHLRgrlvyervRTGLPDPERPRLDPDslagkldfKPHpfrawLEAELGRR 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 615 SSHL--DS--SLNKYN--------------------------------SSQKVIQELNAEIARQKDSIMILQTQLDSAIQ 658
Cdd:COG4913 559 FDYVcvDSpeELRRHPraitragqvkgngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 659 KEKNCFQnmvSKEAYEELVRKSGNCQD---------DLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERM 729
Cdd:COG4913 639 ELDALQE---RREALQRLAEYSWDEIDvasaereiaELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEI 715
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428054 730 KKLNMELKKLQGFQQQSEQEVHNFDKK--------LEEMSNQVLQWQRQHQsdlkMLAAKESQLREFQEEMATLRESL 799
Cdd:COG4913 716 GRLEKELEQAEEELDELQDRLEAAEDLarlelralLEERFAAALGDAVERE----LRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
398-716 |
1.82e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 398 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA----HLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE 473
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKkaleYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 474 SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE 553
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 554 IKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQ 633
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 634 ELNAEIARQKDSIMILQTQLD---SAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQ 710
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEeeeESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
....*.
gi 1720428054 711 TQERKA 716
Cdd:pfam02463 493 QKLEER 498
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
344-595 |
1.92e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLK---- 419
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELN---EEYNELQAELEALQAEID--KLQAEIAEAEAEIEERREELGerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 420 -VSDQNLTQSKEEAHLSASSLEDahrkiencllqdkqkeevikdLQSQLHKLQKESSkieeerkHNRQRLQELSSELSEg 498
Cdd:COG3883 94 aLYRSGGSVSYLDVLLGSESFSD---------------------FLDRLSALSKIAD-------ADADLLEELKADKAE- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 499 qrrlsnAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 578
Cdd:COG3883 145 ------LEAKKAELEAKLAELEALKAEL-------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
250
....*....|....*..
gi 1720428054 579 IEALRQEAKRKEKMAKE 595
Cdd:COG3883 212 AAAAAAAAAAAAAAAAA 228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
322-574 |
1.92e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 322 LQDLQQQYTESQKLSLKkdkllQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidcEALR 401
Cdd:COG3206 154 ANALAEAYLEQNLELRR-----EEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA----------KLLL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 402 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkIENCLLQDKQKEevIKDLQSQLHKLQKESSKIEEER 481
Cdd:COG3206 219 QQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL---LQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDV 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 482 KHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE--EELLEikgLL 558
Cdd:COG3206 294 IALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvaRELYE---SL 370
|
250
....*....|....*.
gi 1720428054 559 EEKREQLKKSKEQEKA 574
Cdd:COG3206 371 LQRLEEARLAEALTVG 386
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
262-799 |
2.08e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 262 VEEYQNLVKDLRMELEAVSE----QKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSL 337
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 338 KKDKLLQDKDERLHELEKNLMQVQNSLRE--------KEAELEKL------------------QCTTKELDT--SLQEAR 389
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvdfEEASGKKIyehdsmstmhfrslgsaiSKILRELDTeiSYLKGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 390 QSTSKIDCEALRAE--------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVI 460
Cdd:pfam15921 240 IFPVEDQLEALKSEsqnkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIqEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 461 KDLQSQLHKLQkesSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEK-----------SLLQKTLDEDEKKIDEL-FH 528
Cdd:pfam15921 320 SDLESTVSQLR---SELREAKRMYEDKIEELEKQLVLANSELTEARTERdqfsqesgnldDQLQKLLADLHKREKELsLE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 529 STQVSEQKQRELTNSI------RKLEEELLEIK---GLLEEKREQLKKSKEQE-KALEEEIEALRQEAKRKEKM--AKEH 596
Cdd:pfam15921 397 KEQNKRLWDRDTGNSItidhlrRELDDRNMEVQrleALLKAMKSECQGQMERQmAAIQGKNESLEKVSSLTAQLesTKEM 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 597 LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEEL 676
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 677 VRKSGNCQDDLTQALEKLTQATSETkslNRSLQQTQERKAQLEDEIaayeermKKLNMELKKLQGFQQQSEQEVHNFDKK 756
Cdd:pfam15921 557 MAEKDKVIEILRQQIENMTQLVGQH---GRTAGAMQVEKAQLEKEI-------NDRRLELQEFKILKDKKDAKIRELEAR 626
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1720428054 757 LEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 799
Cdd:pfam15921 627 VSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL 669
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
447-753 |
2.22e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 447 ENCLLQDKQKEEVIKDLQSQLH-KLQKESSKIE-----EERKHNRQRLQELSSELSEGQRRLSNAEKEKSL--LQKTLDE 518
Cdd:COG3206 107 EDPLGEEASREAAIERLRKNLTvEPVKGSNVIEisytsPDPELAAAVANALAEAYLEQNLELRREEARKALefLEEQLPE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 519 DEKKIDElfhstqvSEQKQREL--TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEH 596
Cdd:COG3206 187 LRKELEE-------AEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 597 LRklDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNMVSKeayeel 676
Cdd:COG3206 260 LQ--SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-------LRAQLQQEAQRILASLEAELEA------ 324
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428054 677 vrksgncqddLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLnmeLKKLQGFQQQSEQEVHNF 753
Cdd:COG3206 325 ----------LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESL---LQRLEEARLAEALTVGNV 388
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
469-655 |
4.04e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 469 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLE 548
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 549 --EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYN 626
Cdd:COG4717 123 klLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180
....*....|....*....|....*....
gi 1720428054 627 SSQKVIQELNAEIARQKDSIMILQTQLDS 655
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQ 231
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
404-615 |
4.23e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 404 IQKLKDSLEEAREQLKVSDQNL-------TQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKES 474
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIarkqnkyDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIksKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 475 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseqkqRELTNSIRKLEEELLEI 554
Cdd:PHA02562 274 FQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL-----------EEIMDEFNEQSKKLLEL 342
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428054 555 KGLLEEKREQLKKSKEQEKALEEEIEALRQE-AKRKEKMAK--EHLRKLDEEKENLQAELTSRS 615
Cdd:PHA02562 343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEfVDNAEELAKlqDELDKIVKTKSELVKEKYHRG 406
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
493-660 |
6.43e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 493 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKK----- 567
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraral 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 568 ---------------SK-----------------------EQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 609
Cdd:COG3883 96 yrsggsvsyldvllgSEsfsdfldrlsalskiadadadllEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 610 ELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 660
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
454-805 |
6.44e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.43 E-value: 6.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 454 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS 533
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 534 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKeHLRKLDEEKENLQAELTS 613
Cdd:pfam07888 128 EARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELR-SLSKEFQELRNSLAQRDT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 614 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQDDLTQALEK 693
Cdd:pfam07888 207 QVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGL------GEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 694 LTQATSETKSLNRSLQQTQERKAQ----LEDEIAAYEERMKKLNMELKKLQGFQQQseqevhnfdkklEEMSNQVLQWQR 769
Cdd:pfam07888 281 AAQLTLQLADASLALREGRARWAQeretLQQSAEADKDRIEKLSAELQRLEERLQE------------ERMEREKLEVEL 348
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720428054 770 QHQSDLKMLAAKESQlREFQEEMATLResLLADEKE 805
Cdd:pfam07888 349 GREKDCNRVQLSESR-RELQELKASLR--VAQKEKE 381
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
318-790 |
6.55e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 6.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 318 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDC 397
Cdd:TIGR00606 417 LQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLT 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 398 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQL------HKLQ 471
Cdd:TIGR00606 497 ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQLE 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 472 KESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhSTQVSEQKQRELTNSIRKLEEEL 551
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC-GSQDEESDLERLKEEIEKSSKQR 655
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 552 LEIKG---LLEEKREQLK--------------KSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 614
Cdd:TIGR00606 656 AMLAGataVYSQFITQLTdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 615 SSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELvrksgncQDDLTQALEKL 694
Cdd:TIGR00606 736 QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERF-------QMELKDVERKI 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 695 TQATSETKSLNRSLQQTQERKaqledEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSD 774
Cdd:TIGR00606 809 AQQAAKLQGSDLDRTVQQVNQ-----EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRR 883
|
490
....*....|....*.
gi 1720428054 775 LKMLAAKESQLREFQE 790
Cdd:TIGR00606 884 QQFEEQLVELSTEVQS 899
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
349-525 |
6.74e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 6.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 349 RLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 428
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTEL-----EDLEKEIKRLELEIEEVEARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 429 KeeahlSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqrRLSNAEKE 508
Cdd:COG1579 86 R-----NNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAE 157
|
170
....*....|....*..
gi 1720428054 509 KSLLQKTLDEDEKKIDE 525
Cdd:COG1579 158 LEELEAEREELAAKIPP 174
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
362-891 |
7.53e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 362 NSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLED 441
Cdd:TIGR00618 161 KSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 442 AH---RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELssELSEGQRRLSNAEKEKSLLQKTLDE 518
Cdd:TIGR00618 241 SHaylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 519 DEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL--KKSKEQEKALEEEIEALRQE---AKRKEKMA 593
Cdd:TIGR00618 319 KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsiREISCQQHTLTQHIHTLQQQkttLTQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 594 KEHLRKLDEEKENLQAELTSRSS---HLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSK 670
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDlqgQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 671 EAYEELVRKSGncqddltQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQgfqqqseQEV 750
Cdd:TIGR00618 479 EQIHLQETRKK-------AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE-------TSE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 751 HNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR--ESLLADEKEPYSPPAKLTPKETCRHHRENDQI 828
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQniTVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720428054 829 MNNVEQWAKEQKIAnEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 891
Cdd:TIGR00618 625 QDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ 686
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
313-892 |
7.63e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 7.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 313 KETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQST 392
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 393 SKIDCEALRAEIQKLKDS---LEEAREQLKVSDQNLTQSKEEAHL--SASSLEDAHRKIENCLLQDKQKEEVIKDLQsQL 467
Cdd:PTZ00121 1157 ARKAEDARKAEEARKAEDakkAEAARKAEEVRKAEELRKAEDARKaeAARKAEEERKAEEARKAEDAKKAEAVKKAE-EA 1235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 468 HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLS-NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRK 546
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 547 LEEELLEIKGLLEEKREQLKKSKEQEKALEE----EIEALRQEAKRKEKMAKEHLRKLDEEKENLQA--ELTSRSSHLDS 620
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakKKAEEKKKADE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 621 SLNKYNSSQKVIQELN--AEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYE--ELVRKSGNCQDDLTQA--LEKL 694
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKkaEEAKKAEEAKKKAEEAkkADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 695 TQATSETKSLNRSLQQTQERKAQLEDEIAAYEErmKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMsnqvlqwqRQHQSD 774
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA--KKKADEAKKAEEAKKADEAKKAEEAKKADEA--------KKAEEK 1545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 775 LKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQV 854
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
570 580 590
....*....|....*....|....*....|....*...
gi 1720428054 855 KYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKA 892
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
495-613 |
7.82e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 7.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 495 LSEGQRRLSNAEKEKSLLQKtlDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA 574
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAK--EEIHKLRNEF-------EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|....*....
gi 1720428054 575 LEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqAELTS 613
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQELERI-SGLTA 152
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
246-805 |
7.90e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 7.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 246 KILKHLQEQKDSQCLHVEeYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscVIEKKDKETVFLQYRLQDL 325
Cdd:pfam12128 242 EFTKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ---WKEKRDELNGELSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 326 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLqcTTKELD-TSLQEARQSTSKIDCEALRAEI 404
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKAL--TGKHQDvTAKYNRRRSKIKEQNNRDIAGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 405 QKLKDSLEEAREQLKVS----------------DQNLTQSKEEAHLSASSLEDAHRKI------ENCLLQDKQKEEVIKD 462
Cdd:pfam12128 396 KDKLAKIREARDRQLAVaeddlqaleselreqlEAGKLEFNEEEYRLKSRLGELKLRLnqatatPELLLQLENFDERIER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 463 LQSQLHKLQKESSKIEEER------------KHNR--QRLQELSSELSEGQRRLS------------------------- 503
Cdd:pfam12128 476 AREEQEAANAEVERLQSELrqarkrrdqaseALRQasRRLEERQSALDELELQLFpqagtllhflrkeapdweqsigkvi 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 504 -----------------NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT-------NSIRKLEEELLEIKGLLE 559
Cdd:pfam12128 556 spellhrtdldpevwdgSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEealqsarEKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 560 EKREQLKKSKEQEKALEEEIEAL----RQEAKRKEKMAKEHLRKLDEEKENLQAELTS------------RSSHLDSSLN 623
Cdd:pfam12128 636 KASREETFARTALKNARLDLRRLfdekQSEKDKKNKALAERKDSANERLNSLEAQLKQldkkhqawleeqKEQKREARTE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 624 KYNSSQKVIQELNAEIARQKDSIMILQTQLD---SAIQKEKNcfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE 700
Cdd:pfam12128 716 KQAYWQVVEGALDAQLALLKAAIAARRSGAKaelKALETWYK--RDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQE 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 701 TKSLNRSLQQTQERKAQledeiaAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEmsnqvlqwQRQHQSDLKMLAA 780
Cdd:pfam12128 794 VLRYFDWYQETWLQRRP------RLATQLSNIERAISELQQQLARLIADTKLRRAKLEM--------ERKASEKQQVRLS 859
|
650 660
....*....|....*....|....*.
gi 1720428054 781 KE-SQLREFQEEMATLRESLLADEKE 805
Cdd:pfam12128 860 ENlRGLRCEMSKLATLKEDANSEQAQ 885
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
359-809 |
1.06e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 359 QVQNSLrEKEAELEKLQCTTKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA------ 432
Cdd:PRK11281 40 DVQAQL-DALNKQKLLEAEDKLVQQDLEQTLALLDKID--RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNdeetre 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 433 HLSASSLEDAHRKIENCL--LQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL---SEGQRRLSNAEK 507
Cdd:PRK11281 117 TLSTLSLRQLESRLAQTLdqLQNAQND--LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLkggKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 508 EksLLQKTLDEDEKKID----ELFHSTQVSE--QKQRELTNS-IRKLEEELLEIKGLLEEKReqLKKSKEQEKaleeeiE 580
Cdd:PRK11281 195 V--LLQAEQALLNAQNDlqrkSLEGNTQLQDllQKQRDYLTArIQRLEHQLQLLQEAINSKR--LTLSEKTVQ------E 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 581 ALRQEAKrkekmakehlrkldeekenlqaeltsrsshldsslNKYNSSQKVIQELNAeiarqkdsimilQTQLDsaiqke 660
Cdd:PRK11281 265 AQSQDEA-----------------------------------ARIQANPLVAQELEI------------NLQLS------ 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 661 kncfqnmvskeayEELVRKsgncqddlTQALEKLTQATSETKSLNRSLQQTQErkaQLEDEIAAyeermkklnmelkkLQ 740
Cdd:PRK11281 292 -------------QRLLKA--------TEKLNTLTQQNLRVKNWLDRLTQSER---NIKEQISV--------------LK 333
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428054 741 G--------FQQQseQEVHNfDKKLEEMSNQVLQWqRQHQSDLkmlaakeSQLREFQEEMATLRESLLADEKEPYSP 809
Cdd:PRK11281 334 GslllsrilYQQQ--QALPS-ADLIEGLADRIADL-RLEQFEI-------NQQRDALFQPDAYIDKLEAGHKSEVTD 399
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
513-639 |
1.14e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.97 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 513 QKTLDEDEKKIDELFHStqvSEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQekaLEEEIEALRQEAKRK--- 589
Cdd:PRK00409 508 KKLIGEDKEKLNELIAS---LEELERELEQKAEEAEALLKE----AEKLKEELEEKKEK---LQEEEDKLLEEAEKEaqq 577
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 590 -----EKMAKEHLRKLDEEKENLQA-----ELTSRSSHLDSSLNKYNSSQKVIQELNAEI 639
Cdd:PRK00409 578 aikeaKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
172-530 |
1.24e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 172 IQEHQETLK-RLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHpptssedcEDITKILKH 250
Cdd:TIGR02169 728 LEQEEEKLKeRLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--------SRIPEIQAE 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 251 LQEQKdsqclhvEEYQNLVKDLRmELEAvseqkkkimkdmmkleldlhglreetscVIEKKDKETVFLQYRLQDLQQQYT 330
Cdd:TIGR02169 800 LSKLE-------EEVSRIEARLR-EIEQ----------------------------KLNRLTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 331 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskidcealraEIQKLKDS 410
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER------------KIEELEAQ 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 411 LEEAREQLKVsdqnLTQSKEEAHLSASSLEDAHRKIEncllQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQE 490
Cdd:TIGR02169 912 IEKKRKRLSE----LKAKLEALEEELSEIEDPKGEDE----EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEE 983
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1720428054 491 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHST 530
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
312-623 |
1.43e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 312 DKETVFLQY---------RLQDLQQQYTESQKLSLKKDKllqdKDERLHELEKnlmQVQNSLRE----KEAELEKLQCTT 378
Cdd:COG5022 865 KKETIYLQSaqrvelaerQLQELKIDVKSISSLKLVNLE----LESEIIELKK---SLSSDLIEnlefKTELIARLKKLL 937
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 379 KELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQS-KEEAHLSASSLEDAHRKIENCLLQDKQKE 457
Cdd:COG5022 938 NNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGnKANSELKNFKKELAELSKQYGALQESTKQ 1017
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 458 evIKDLQSQLHKLQKESSKIEEER--KHNRQRLQELSSELSEGQRRLS------NAEKEKSLLQKTLDEDEKKIDELFHS 529
Cdd:COG5022 1018 --LKELPVEVAELQSASKIISSESteLSILKPLQKLKGLLLLENNQLQarykalKLRRENSLLDDKQLYQLESTENLLKT 1095
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 530 TQVSEQK--QRELTNSIRKLE---------EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLR 598
Cdd:COG5022 1096 INVKDLEvtNRNLVKPANVLQfivaqmiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA 1175
|
330 340
....*....|....*....|....*
gi 1720428054 599 KLDEEKENLQAELTSRSSHLDSSLN 623
Cdd:COG5022 1176 ALSEKRLYQSALYDEKSKLSSSEVN 1200
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
344-888 |
1.44e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLmqvQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLK---DSLEEAREQLKV 420
Cdd:TIGR00606 297 QGTDEQLNDLYHNH---QRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRhqeHIRARDSLIQSL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 421 SDQNLTQSKEEAHLSASSLEDAHR-KIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQ 499
Cdd:TIGR00606 374 ATRLELDGFERGPFSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 500 RRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI 579
Cdd:TIGR00606 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTT 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 580 EALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR-------SSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQ 652
Cdd:TIGR00606 534 RTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfpnkkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNE 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 653 LDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ----------ERKAQLEDEI 722
Cdd:TIGR00606 614 LESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTdenqsccpvcQRVFQTEAEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 723 aayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLAD 802
Cdd:TIGR00606 694 ---QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ 770
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 803 EKEPYSPPAKLTPKETCRHHRENDQ--IMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKK 880
Cdd:TIGR00606 771 ETLLGTIMPEEESAKVCLTDVTIMErfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
....*...
gi 1720428054 881 LKNEIEEK 888
Cdd:TIGR00606 851 LIQDQQEQ 858
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
318-636 |
1.58e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 318 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDC 397
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 398 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE---- 473
Cdd:pfam02463 268 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKElkel 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 474 ----------SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 543
Cdd:pfam02463 348 eikreaeeeeEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 544 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLN 623
Cdd:pfam02463 428 ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
330
....*....|...
gi 1720428054 624 KYNSSQKVIQELN 636
Cdd:pfam02463 508 GLKVLLALIKDGV 520
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
266-605 |
2.21e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 266 QNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQD 345
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 346 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQK------LKDSLEEAREQLK 419
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKeeklkaQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 420 VSDQNLTQS-KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 498
Cdd:pfam02463 812 EEAELLEEEqLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 499 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEK----- 573
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLlakee 971
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1720428054 574 -------ALEEEIEALRQEAKRKEKMA------KEHLRKLDEEKE 605
Cdd:pfam02463 972 lgkvnlmAIEEFEEKEERYNKDELEKErleeekKKLIRAIIEETC 1016
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
365-818 |
2.54e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.81 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 365 REKEAELEKLQCTTKELDTSLQEARQSTSKIDCE--ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDA 442
Cdd:pfam10174 271 EEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESEllALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 443 HRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNaekekslLQKTLDEDEKK 522
Cdd:pfam10174 351 RLRLE-------EKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIEN-------LQEQLRDKDKQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 523 IDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQlKKSKEQEKAleEEIEALRQEAKR-KEKMakEHLRKLD 601
Cdd:pfam10174 417 LAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQ-REREDRERL--EELESLKKENKDlKEKV--SALQPEL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 602 EEKENLQAELTSRSSHLDSSLNKYNSSQKviqELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmVSKEAYEELVrksg 681
Cdd:pfam10174 492 TEKESSLIDLKEHASSLASSGLKKDSKLK---SLEIAVEQKKEECSKLENQLKKAHNAE-------EAVRTNPEIN---- 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 682 ncqddltqalekltqatsetkslnrslqqtqERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMS 761
Cdd:pfam10174 558 -------------------------------DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELE 606
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428054 762 NQVLqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKET 818
Cdd:pfam10174 607 SLTL---RQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEEL 660
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
398-750 |
2.72e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 398 EALRAEIQKLKDSLEEAREqlkvsDQNLTQSKEEA-------HLSAS----------SLEDAHRKIENCL-------LQD 453
Cdd:PRK04863 789 EQLRAEREELAERYATLSF-----DVQKLQRLHQAfsrfigsHLAVAfeadpeaelrQLNRRRVELERALadhesqeQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 454 KQKEEVIKDLQSQLHKLQKESSKIEEErkHNRQRLQELSSELSEGQ----------RRLSNAEKEKSLLQktldEDEKKI 523
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNLLADE--TLADRVEEIREQLDEAEeakrfvqqhgNALAQLEPIVSVLQ----SDPEQF 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 524 DELFHSTQVSEQKQRELTNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEE--IEALRQEAKRKEKMakehLRKLD 601
Cdd:PRK04863 938 EQLKQDYQQAQQTQRDAKQQAFALTE--------VVQRRAHFSYEDAAEMLAKNSdlNEKLRQRLEQAEQE----RTRAR 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 602 EEKENLQAELTsrsshldsslnKYNSsqkviqelnaeiarqkdsimiLQTQLDSAIQkekncfqnmvskeAYEELVrksg 681
Cdd:PRK04863 1006 EQLRQAQAQLA-----------QYNQ---------------------VLASLKSSYD-------------AKRQML---- 1036
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428054 682 ncqDDLTQALEKLT---------QATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ-GFQQQSEQEV 750
Cdd:PRK04863 1037 ---QELKQELQDLGvpadsgaeeRARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLErDYHEMREQVV 1112
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
348-657 |
3.33e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 348 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQStskIDCEALRA-EIQKLKDSLEEAREQLKVSDQNLT 426
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LDVQQTRAiQYQQAVQALEKARALCGLPDLTPE 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 427 QSKEEAHLSASSLEDAHRKiencLLQDKQKEEVIKDLQSQLHK----LQKESSKIEEERKHNR---------------QR 487
Cdd:COG3096 438 NAEDYLAAFRAKEQQATEE----VLELEQKLSVADAARRQFEKayelVCKIAGEVERSQAWQTarellrryrsqqalaQR 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 488 LQELSSELSEGQRRLSNAEKEKSLLQktldedekkidelfhstQVSEQKQRELTNSIrKLEEELLEIKGLLEEKREQLKK 567
Cdd:COG3096 514 LQQLRAQLAELEQRLRQQQNAERLLE-----------------EFCQRIGQQLDAAE-ELEELLAELEAQLEELEEQAAE 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 568 SKEQEKALEEEIEALRQEAKRKEKMAKEhLRKLDEEKENLQAELtsrSSHLDSSLNKYNSSQKVIQELNaEIARQKDSIM 647
Cdd:COG3096 576 AVEQRSELRQQLEQLRARIKELAARAPA-WLAAQDALERLREQS---GEALADSQEVTAAMQQLLERER-EATVERDELA 650
|
330
....*....|
gi 1720428054 648 ILQTQLDSAI 657
Cdd:COG3096 651 ARKQALESQI 660
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
325-749 |
3.65e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 44.28 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 325 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKlQCTTKELDTSLQEARQSTSKidceaLRAEI 404
Cdd:pfam13166 87 LGEESIEIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEKLEADFLD-ECWKKIKRKKNSALSEALNG-----FKYEA 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 405 QKLKDSLEEAREQLKVSDQNLTQSKEEAhLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLhKLQKESSKIEEERKHN 484
Cdd:pfam13166 161 NFKSRLLREIEKDNFNAGVLLSDEDRKA-ALATVFSDNKPEIAPLTFNVIDFDALEKAEILIQ-KVIGKSSAIEELIKNP 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 485 rqrlqELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKK-IDELFhstqvseqkQRELTNSIRKLEEELLEIKGLLEEKRE 563
Cdd:pfam13166 239 -----DLADWVEQGLELHKAHLDTCPFCGQPLPAERKAaLEAHF---------DDEFTEFQNRLQKLIEKVESAISSLLA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 564 QLKKSKEQEK---ALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqaeltSRSSHLDSSLNKYNSSQKVIQELNAEIA 640
Cdd:pfam13166 305 QLPAVSDLASllsAFELDVEDIESEAEVLNSQLDGLRRALEAKRKDP-----FKSIELDSVDAKIESINDLVASINELIA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 641 RQKDSImilqTQLDSAIQKEKNCFQNMVSKEAYEELVrksgNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLED 720
Cdd:pfam13166 380 KHNEIT----DNFEEEKNKAKKKLRLHLVEEFKSEID----EYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEA 451
|
410 420 430
....*....|....*....|....*....|.
gi 1720428054 721 EIAAYEERMKKLNMELKK--LQGFQQQSEQE 749
Cdd:pfam13166 452 QLRDHKPGADEINKLLKAfgFGELELSFNEE 482
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
493-610 |
3.74e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.30 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 493 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfhstqvseqkqreltnSIRKLEEELLEikglLEEKREQLKKSKEQE 572
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFE--------------------RLAELRDELAE----LEEELEALKARWEAE 466
|
90 100 110
....*....|....*....|....*....|....*...
gi 1720428054 573 KALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 610
Cdd:COG0542 467 KELIEEIQELKEELEQRYGKIPELEKELAELEEELAEL 504
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
13-653 |
3.80e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 13 GLKNEAGERDRDVSNLNSKLLSLQLDIKNLHDVCKRQGKTLQENQLCVEEAMLKANHNKKQAQTLVFTDNQMDFRVNK-- 90
Cdd:TIGR04523 23 GYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKln 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 91 ------QYHLRQLQQLKKKLLTLQQELEFRTQELQASYCSLLQYQSILEKQTSDLLVLHRHCKlKEDEDPENKGDHPKVR 164
Cdd:TIGR04523 103 sdlskiNSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLK-KQKEELENELNLLEKE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 165 IYTSPCVIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTA----THRHPPTSSED 240
Cdd:TIGR04523 182 KLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTeisnTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 241 CEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKimkdmmkleldlhGLREETSCVIEKKDKEtvflqy 320
Cdd:TIGR04523 262 QNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ-------------DWNKELKSELKNQEKK------ 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 321 rLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIdcEAL 400
Cdd:TIGR04523 323 -LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK---KENQSYKQEIKNLESQI--NDL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 401 RAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEE 480
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRS 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 481 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEE 560
Cdd:TIGR04523 477 INKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL-------KEKIEKLESEKKEKESKISDLEDELNK 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 561 KREQLKKS--KEQEKALEEEIEALRQE---AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQEL 635
Cdd:TIGR04523 550 DDFELKKEnlEKEIDEKNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
650
....*....|....*...
gi 1720428054 636 NAEIARQKDSIMILQTQL 653
Cdd:TIGR04523 630 SSIIKNIKSKKNKLKQEV 647
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
372-645 |
4.03e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 372 EKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLL 451
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREEL--EQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 452 QDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ 531
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 532 VSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 611
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270
....*....|....*....|....*....|....
gi 1720428054 612 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDS 645
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLL 302
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
308-508 |
4.58e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 308 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQE 387
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 388 ARQSTSKID--------------CEALRAEI---QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENcl 450
Cdd:COG3883 98 SGGSVSYLDvllgsesfsdfldrLSALSKIAdadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA-- 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428054 451 lQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 508
Cdd:COG3883 176 -QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
458-772 |
5.32e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 5.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 458 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvSEQKQ 537
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA-------AQAEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 538 RELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSH 617
Cdd:COG4372 97 AQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 618 LDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQA 697
Cdd:COG4372 177 SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVI 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428054 698 TSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ 772
Cdd:COG4372 257 LKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
469-797 |
5.39e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 469 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSnaekeksllqkTLDEDEKKIDELFHSTQVSEQKQRELT---NSIR 545
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAES-----------DLEQDYQAASDHLNLVQTALRQQEKIEryqADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 546 KLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR--------------------QEAKRKEKMAKE-------HLR 598
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKsqladyqqaldvqqtraiqyQQAVQALERAKQlcglpdlTAD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 599 KLDEEKENLQAELTSRSSHLDSSLNKYNSSQkviqelnaEIARQKDSIMILQTQLDSAIQKE--KNCFQNMVskEAYEEL 676
Cdd:PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQ--------AAHSQFEQAYQLVRKIAGEVSRSeaWDVARELL--RRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 677 VRKSGNCQdDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQgfQQQSEqevhnfdkk 756
Cdd:PRK04863 509 RHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS--ESVSE--------- 576
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1720428054 757 LEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE 797
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLRE 617
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
319-571 |
6.29e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 319 QYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI--D 396
Cdd:TIGR00606 835 QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspL 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 397 CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVIKDLQSQLHKLQKESS 475
Cdd:TIGR00606 915 ETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIqDGKDDYLKQKETELNTVNAQLEECEKHQE 994
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 476 KIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLlqKTLDEDEKKIDELFHSTQVSEQKQ--RELTNSIRKLEEELLE 553
Cdd:TIGR00606 995 KINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENEL--KEVEEELKQHLKEMGQMQVLQMKQehQKLEENIDLIKRNHVL 1072
|
250
....*....|....*...
gi 1720428054 554 IKGLLEEKREQLKKSKEQ 571
Cdd:TIGR00606 1073 ALGRQKGYEKEIKHFKKE 1090
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-552 |
7.02e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 7.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 182 LSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRhppTSSEDCEDITKILKHLQEQKDSQCLH 261
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS---EKQRELEEKQNEIEKLKKENQSYKQE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 262 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDK 341
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 342 LLQDKDERLHELEK-------NLMQVQNSLREKEAELEKLQCTTKELDTSLQE--ARQSTSKIDCEALRAEIQKLKDSLE 412
Cdd:TIGR04523 462 TRESLETQLKVLSRsinkikqNLEQKQKELKSKEKELKKLNEEKKELEEKVKDltKKISSLKEKIEKLESEKKEKESKIS 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 413 EAREQLKVSDQNLTQSK------------EEAHLSASSLEDAHRKIENCLlqdKQKEEVIKDLQSQLHKLQKESSKIEEE 480
Cdd:TIGR04523 542 DLEDELNKDDFELKKENlekeideknkeiEELKQTQKSLKKKQEEKQELI---DQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720428054 481 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELL 552
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELS 690
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
670-805 |
7.19e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 670 KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQ----- 744
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllply 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428054 745 ----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkmLAAKESQLREFQEEMATLRESLLADEKE 805
Cdd:COG4717 132 qeleALEAELAELPERLEELEERLEELRELEEE----LEELEAELAELQEELEELLEQLSLATEE 192
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
406-597 |
7.29e-04 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 43.32 E-value: 7.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 406 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSL-EDAHRKiencllQDKQKEEVIKDLQSQLHKLQKEsskIEEERKHN 484
Cdd:PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIkKTAKRE------SKALKKELLLEAKEEARKYREE---IEQEFKSE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 485 RQRLQELSSELSEGQRRLsnaekeksllqktldedEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 564
Cdd:PRK00106 96 RQELKQIESRLTERATSL-----------------DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 565 LKKS-------------KEQEKALEEEI-----EALRQEAKRKEKMAKEHL 597
Cdd:PRK00106 159 LERVaalsqaeareiilAETENKLTHEIatrirEAEREVKDRSDKMAKDLL 209
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
450-608 |
8.46e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.07 E-value: 8.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 450 LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHS 529
Cdd:pfam05262 177 ISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 530 TQVSEQKQReltNSIRKLEEELLEIKGLLEEKREQ--LKKSKEQEKALEEEIEALRQEAKRKEKMAK----EHLRKLDEE 603
Cdd:pfam05262 257 AKNLPKPAD---TSSPKEDKQVAENQKREIEKAQIeiKKNDEEALKAKDHKAFDLKQESKASEKEAEdkelEAQKKREPV 333
|
....*
gi 1720428054 604 KENLQ 608
Cdd:pfam05262 334 AEDLQ 338
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
546-679 |
8.50e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 8.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 546 KLEEELLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeEKENLQAEltsrsSHLDSSLNK 624
Cdd:PRK12704 32 KIKEAEEEAKRILEEaKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL--EKRLLQKE-----ENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428054 625 YNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQ---NMVSKEAYEELVRK 679
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELErisGLTAEEAKEILLEK 162
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
452-577 |
9.17e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 452 QDKQK-EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRR----LSNAEKEkslLQKTLDEDEKKIDEL 526
Cdd:PRK00409 513 EDKEKlNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEedklLEEAEKE---AQQAIKEAKKEADEI 589
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 527 FHSTQVSEQKQRELTNSiRKLEEELLEIKGLLEEKREQLKKSKEQEKALEE 577
Cdd:PRK00409 590 IKELRQLQKGGYASVKA-HELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| FapA |
pfam03961 |
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta ... |
535-617 |
9.40e-04 |
|
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta solenoid domain of FapA and its homologs. Members of this family include FapA (flagellar assembly protein A) found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction. This entry shows similarity to pfam03775 suggesting a similar functional role.
Pssm-ID: 461111 [Multi-domain] Cd Length: 272 Bit Score: 42.29 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 535 QKQRELTNSIRKLEEELLEIKGLLEekreqlKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 614
Cdd:pfam03961 156 EKLEELEKELEELEEELEKLKKRLK------KLPKKARGQLPPEKREQLEKLLETKNKLSEELEELEEELKELKEELESL 229
|
...
gi 1720428054 615 SSH 617
Cdd:pfam03961 230 LGE 232
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
439-891 |
1.36e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 439 LEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE 518
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 519 DEKKIDElfhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK--RKEKMAKEH 596
Cdd:TIGR04523 129 LEKQKKE-------NKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDkiKNKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 597 LRKLDEEKENLQAELTSRSSHLDsslNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEA-YEE 675
Cdd:TIGR04523 202 LLSNLKKKIQKNKSLESQISELK---KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKeLEQ 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 676 LVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEV 750
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 751 HNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLrefqeematlreslladekepysppakltpketcrhhrendqimN 830
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI--------------------------------------------N 394
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 831 NVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 891
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELI 455
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
399-642 |
1.49e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 399 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 478
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 479 EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHStqvSEQKQRELTNSIRKLEEELLEIKGLL 558
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE---EEALEEQLEAEREELLEELLEEEELL 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 559 EEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQAELTSrsshLDSSLNKYnssQKVIQEL 635
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLEREIEALGPvnlLAIEEYEELEERYDFLSEQRED----LEEARETL---EEAIEEI 821
|
....*..
gi 1720428054 636 NAEIARQ 642
Cdd:COG1196 822 DRETRER 828
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
177-603 |
1.51e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 177 ETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDcEDITKILKHLQEQKD 256
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 257 SQCLHVEEYQNLVKDLRMELEAVSEqkkkimkdmmkLELDLHGLREETSCVIEKKDKEtvfLQYRLQDLQQQYTESQKLS 336
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAE-----------LQEELEELLEQLSLATEEELQD---LAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 337 LKKDKLLQDKDERLHELEKNLM--QVQNSLREKE---------AELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQ 405
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEaaALEERLKEARlllliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 406 KLKDSLEEARE-QLKVSDQNLTQSKEEAHLSASSLEDAHRKIEncLLQDKQKEEVIKDLQSQLHKLQKESsKIEEERKHN 484
Cdd:COG4717 296 EKASLGKEAEElQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREAEELEEEL-QLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 485 RQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 564
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL-----GELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1720428054 565 LKKSKEQEKALEEEIEALR-----QEAKRKEKMAKEHLRKLDEE 603
Cdd:COG4717 448 LEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEE 491
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
348-722 |
1.53e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 348 ERLHELEKNLMQVQNSLREKEA-------ELEKLQCTTKELDTSLQEAR----------QSTSKIdcEALRAEIQKLKDS 410
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYrlvemarELEELSARESDLEQDYQAASdhlnlvqtalRQQEKI--ERYQEDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 411 LEEAREQLKVSDQNLTQSKEEAHLS-------ASSLEDAHRKIE---NCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEE 480
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARLEAAeeevdslKSQLADYQQALDvqqTRAIQYQQAVQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 481 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEQKQRELTN---SIRKLEEELLEIKGL 557
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEV--ERSQAWQTARELLRryrSQQALAQRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 558 LEEKREQLkkskEQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNA 637
Cdd:COG3096 521 LAELEQRL----RQQQNAERLLEEFCQRIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRA 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 638 EIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAyeelvrksgnCQDDLTQALEKLTQATSETkslnrslQQTQERKAQ 717
Cdd:COG3096 593 RIKELAARAPAWLAAQDALERLREQSGEALADSQE----------VTAAMQQLLEREREATVER-------DELAARKQA 655
|
....*
gi 1720428054 718 LEDEI 722
Cdd:COG3096 656 LESQI 660
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
398-887 |
1.56e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 398 EALRAEIQKLKDSLEEAREQLKVSDQNLTQskeeahlsassledahrkiencllqdkqkeevikdLQSQLHKLQKESSKI 477
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQ-----------------------------------ANGELEKASREETFA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 478 EEERKHNRQRLQELSSELSEGQRRLSNA-EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREltnsirkleeelleikG 556
Cdd:pfam12128 645 RTALKNARLDLRRLFDEKQSEKDKKNKAlAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE----------------Q 708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 557 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENlqaeltsrsshldsSLNKYNSSQKVIQELN 636
Cdd:pfam12128 709 KREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKR--------------DLASLGVDPDVIAKLK 774
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 637 AEIArqkdsimilqtqldSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDD-LTQALEKLTQATSETK-SLNRSLQQTQER 714
Cdd:pfam12128 775 REIR--------------TLERKIERIAVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQqQLARLIADTKLR 840
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 715 KAQLEDEIAAYEERMKKLNMELKKLQGFQQ-----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkMLAAKESQLREFQ 789
Cdd:pfam12128 841 RAKLEMERKASEKQQVRLSENLRGLRCEMSklatlKEDANSEQAQGSIGERLAQLEDLKLKRDY---LSESVKKYVEHFK 917
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 790 EEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENdQIMNNVEQWAK---EQKIaneklgNKLREQVKYIAK-LTGEKD 865
Cdd:pfam12128 918 NVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYR-KLVPYLEQWFDvrvPQSI------MVLREQVSILGVdLTEFYD 990
|
490 500
....*....|....*....|..
gi 1720428054 866 HLHNVMVHLQQENKKLKNEIEE 887
Cdd:pfam12128 991 VLADFDRRIASFSRELQREVGE 1012
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
453-600 |
1.58e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 453 DKQKEEVIKDLQSQLHKLQKESSK-IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEkkiDELFHSTQ 531
Cdd:PRK12705 36 ERILQEAQKEAEEKLEAALLEAKElLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE---NQLEEREK 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 532 VSEQKQRELTNSIRKLEEELLEIKGLL-EEKREQLKKSKEQEkaLEEEIEalrQEAKRKEKMAKEHLRKL 600
Cdd:PRK12705 113 ALSARELELEELEKQLDNELYRVAGLTpEQARKLLLKLLDAE--LEEEKA---QRVKKIEEEADLEAERK 177
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
400-568 |
1.67e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 400 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEahlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKESSKI 477
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTE-------LEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 478 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvseqKQRELTNSIRKLEEELLEikgl 557
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEE----------KKAELDEELAELEAELEE---- 160
|
170
....*....|.
gi 1720428054 558 LEEKREQLKKS 568
Cdd:COG1579 161 LEAEREELAAK 171
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
454-724 |
1.77e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.34 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 454 KQKEEVIKDLQSQLhklQKESSK-------IEEERKHNRQRLQELSSELSE-GQRRLSNAEKEKSllQKTLDEDEKKIDE 525
Cdd:PTZ00108 995 KRKEYLLGKLEREL---ARLSNKvrfikhvINGELVITNAKKKDLVKELKKlGYVRFKDIIKKKS--EKITAEEEEGAEE 1069
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 526 LFHSTQVSEQKQRE---------------LTN-SIRKLEEELLEIKGLLEEKR---------EQLKKSKEQEKALEEEIE 580
Cdd:PTZ00108 1070 DDEADDEDDEEELGaavsydyllsmpiwsLTKeKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEE 1149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 581 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKY----NSSQKVIQELNAEIARQKDSIMILQTQLDSA 656
Cdd:PTZ00108 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVvgnsKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDE 1229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 657 IQKEKNCFQNMV---SKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAA 724
Cdd:PTZ00108 1230 EQKTKPKKSSVKrlkSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
455-643 |
1.96e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 455 QKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQR--RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 532
Cdd:pfam17380 338 EQERMAMERERELERIRQE----ERKRELERIRQEEIAMEISRMREleRLQMERQQKNERVRQELEAARKVKILEEERQR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 533 SEQKQRELTNSIRKLEEEL--LEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEA----KRKEKMAKEHLRKLDEEKEN 606
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEArqREVRRLEEERAREMERVRLEEQERQQQVERLRQQEeerkRKKLELEKEKRDRKRAEEQR 493
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1720428054 607 ---LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQK 643
Cdd:pfam17380 494 rkiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
456-594 |
1.99e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 456 KEEVIKDLQSQLHKLqkeSSKIEEERKHNrqrlQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEq 535
Cdd:PRK09039 51 KDSALDRLNSQIAEL---ADLLSLERQGN----QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA--EGRAGE- 120
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428054 536 kqreltnsirkLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQ-----EAKRKEKMAK 594
Cdd:PRK09039 121 -----------LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAaldasEKRDRESQAK 173
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
478-816 |
2.47e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 41.39 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 478 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTldedekkiDELFHSTQVSEQKQRELTNSIRKLEEELLEikgl 557
Cdd:pfam02029 10 ERRRRAREERRRQKEEEEPSGQVTESVEPNEHNSYEED--------SELKPSGQGGLDEEEAFLDRTAKREERRQK---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 558 leEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHL---RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 634
Cdd:pfam02029 78 --RLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWekeEKRDSRLGRYKEEETEIREKEYQENKWSTEVRQAEEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 635 LNAEIARQKDSIMI-LQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQE 713
Cdd:pfam02029 156 GEEEEDKSEEAEEVpTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 714 RK----AQLEDEIAAYEERMK---KLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQH-QSDLKMLAAKESQL 785
Cdd:pfam02029 236 REeeaeVFLEAEQKLEELRRRrqeKESEEFEKLRQKQQEAELELEELKKKREERRKLLEEEEQRRkQEEAERKLREEEEK 315
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1720428054 786 REFQEEMATLR-----------ESLLADEKEPYSPpakLTPK 816
Cdd:pfam02029 316 RRMKEEIERRRaeaaekrqklpEDSSSEGKKPFKC---FSPK 354
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
346-495 |
2.67e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 346 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstskidcEALRAEIQKLKDSLEEAREQLKVSDQNL 425
Cdd:PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA---------EAERSRLQALLAELAGAGAAAEGRAGEL 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 426 TQS-KEEAHLSASSLedahRKIEncLLQDKqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL 495
Cdd:PRK09039 122 AQElDSEKQVSARAL----AQVE--LLNQQ-----IAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
248-630 |
2.94e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 248 LKHLQEQKDSQCLHVEEYQNLVKDLRM--ELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYrlqdl 325
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKaeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY----- 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 326 qQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAE-I 404
Cdd:PTZ00121 1602 -EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEeA 1680
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 405 QKLKDSLEEAREQLKVSDQ------NLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 478
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEeakkaeELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 479 EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLqktldEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE-ELLEIKGL 557
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM-----EVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmEDSAIKEV 1835
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720428054 558 LEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 630
Cdd:PTZ00121 1836 ADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
501-889 |
2.96e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 501 RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 580
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 581 ALRQEAKRKE---KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 657
Cdd:TIGR04523 114 NDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 658 QKEKNCFQNMVSKEAYEELVRKsgncqddltqALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELK 737
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKS----------LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 738 KLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ-----HQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAK 812
Cdd:TIGR04523 264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428054 813 LTPKETCRHHRENDQIMNNVEQWAKEQKIanEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 889
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEI--EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
176-787 |
3.21e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 176 QETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYtathrhpptsSEDCEDITKILKHLQEQK 255
Cdd:pfam01576 415 QELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL----------ESQLQDTQELLQEETRQK 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 256 DSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR---EETSCVIEKKDKETVFLQYRLQDLQQQYTES 332
Cdd:pfam01576 485 LNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKkklEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 333 QKLSLKKDKLLqdkdERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDCEALRAE--------- 403
Cdd:pfam01576 565 AAAYDKLEKTK----NRLQQELDDLLVDLDHQRQLVSNLEKKQ---KKFDQMLAEEKAISARYAEERDRAEaeareketr 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 404 ----------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIencllqdkqkEEVIKDLQSQLHKLQKE 473
Cdd:pfam01576 638 alslaraleeALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRAL----------EQQVEEMKTQLEELEDE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 474 SSKIEEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvsEQKQRELTNSIRK-LEEEL 551
Cdd:pfam01576 708 LQATEDAKLRLEVNMQALKAQFErDLQARDEQGEEKRRQLVKQVRELEAELED--------ERKQRAQAVAAKKkLELDL 779
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 552 LEIKGLL-------EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeekENLQAELTSRSSHLDSSLNK 624
Cdd:pfam01576 780 KELEAQIdaankgrEEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKL----KNLEAELLQLQEDLAASERA 855
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 625 YNSSQKVIQELNAEIARQKDSimilqtqlDSAIQKEKNCFQNMVSkEAYEELVRKSGNCQddltQALEKLTQATSETKSL 704
Cdd:pfam01576 856 RRQAQQERDELADEIASGASG--------KSALQDEKRRLEARIA-QLEEELEEEQSNTE----LLNDRLRKSTLQVEQL 922
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 705 NRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG-FQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKES 783
Cdd:pfam01576 923 TTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGtVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEK 1002
|
....
gi 1720428054 784 QLRE 787
Cdd:pfam01576 1003 KLKE 1006
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
412-754 |
3.39e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 412 EEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQD-KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRlQE 490
Cdd:COG5185 228 IINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYTKS-ID 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 491 LSSELSEGQRRLSNAEKEKSLLQKTLdEDEKKIDELFHSTqvsEQKQRELTNSIRKLEEELLEIKGL--LEEKREQLKKS 568
Cdd:COG5185 307 IKKATESLEEQLAAAEAEQELEESKR-ETETGIQNLTAEI---EQGQESLTENLEAIKEEIENIVGEveLSKSSEELDSF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 569 KEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRsshLDSSLNKYNSSQKVIQELNAEIARQKDSIMi 648
Cdd:COG5185 383 KDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQ---IEQATSSNEEVSKLLNELISELNKVMREAD- 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 649 lqtqldsaiqkekncfqnmvskeayeelvrksGNCQDDLTQALEKLTQATSETK-SLNRSLQQTQERKAQLEDEIAAYEE 727
Cdd:COG5185 459 --------------------------------EESQSRLEEAYDEINRSVRSKKeDLNEELTQIESRVSTLKATLEKLRA 506
|
330 340
....*....|....*....|....*..
gi 1720428054 728 RMKklnmelKKLQGFQQQSEQEVHNFD 754
Cdd:COG5185 507 KLE------RQLEGVRSKLDQVAESLK 527
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
529-805 |
3.43e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 529 STQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQ 608
Cdd:COG1340 2 KTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 609 aELTSRSSHLDSSLNKYNSSQKVIQELNAEIArqkdsimilqtQLDSAIQKEKNCFQNMV-SKEAYEELVRKSgncqddl 687
Cdd:COG1340 82 -ELNEKLNELREELDELRKELAELNKAGGSID-----------KLRKEIERLEWRQQTEVlSPEEEKELVEKI------- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 688 tQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQW 767
Cdd:COG1340 143 -KELEKELEKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEA 221
|
250 260 270
....*....|....*....|....*....|....*...
gi 1720428054 768 QRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 805
Cdd:COG1340 222 QEKADELHEEIIELQKELRELRKELKKLRKKQRALKRE 259
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
453-799 |
3.72e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 453 DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 532
Cdd:COG5185 168 LTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELED 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 533 SEQKQRELTNSIRKLEEELLEIkglLEEKREQLKKSKEQEKALEEEIEALRQEAKrkEKMAKEHLRKLDEEKENLQAELT 612
Cdd:COG5185 248 LAQTSDKLEKLVEQNTDLRLEK---LGENAESSKRLNENANNLIKQFENTKEKIA--EYTKSIDIKKATESLEEQLAAAE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 613 SRSSHLDSSLnkynssqkviqELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALE 692
Cdd:COG5185 323 AEQELEESKR-----------ETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKE 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 693 KLTQATSETKslnrslQQTQERKAQLEDEIAAYEERMKKLNMELKKL-------QGFQQQSEQEVHNFDKKLEEMSNQVL 765
Cdd:COG5185 392 SLDEIPQNQR------GYAQEILATLEDTLKAADRQIEELQRQIEQAtssneevSKLLNELISELNKVMREADEESQSRL 465
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720428054 766 QWQRQH--QSDLKMLAAKESQLREFQEEMATLRESL 799
Cdd:COG5185 466 EEAYDEinRSVRSKKEDLNEELTQIESRVSTLKATL 501
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
312-526 |
3.74e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 312 DKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkeldtslqearqs 391
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 392 tskidcealrAEIQKLKDSLEEAREQLKVSDQNLtqSKEEAHLSASSLEDAHRKIEN-CLLQDKQKeEVIKDLQSQLHKL 470
Cdd:COG3883 79 ----------AEIEERREELGERARALYRSGGSV--SYLDVLLGSESFSDFLDRLSAlSKIADADA-DLLEELKADKAEL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428054 471 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 526
Cdd:COG3883 146 EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
363-577 |
3.83e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 363 SLREKEAELEKLQCTTKELDtsLQEARQSTSKID-CEALRAEIQKLKDSLEEAREQLkvsdQNLTQSKEEAHLSASSLED 441
Cdd:COG4717 50 RLEKEADELFKPQGRKPELN--LKELKELEEELKeAEEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 442 AHRKIENcLLQDKQKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL-LQKTLDEDE 520
Cdd:COG4717 124 LLQLLPL-YQELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLaTEEELQDLA 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428054 521 KKIDELfhstqvsEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQEKALEE 577
Cdd:COG4717 199 EELEEL-------QQRLAELEEELEEAQEELEE----LEEELEQLENELEAAALEER 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
455-791 |
4.23e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 455 QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ-VS 533
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQdKI 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 534 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKmakEHLRKLDEEKENLQAELTS 613
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK---EEKLKAQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 614 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSaiqkEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEK 693
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE----EELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 694 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG------FQQQSEQEVHNFDKKLEEMSNQVLQW 767
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEepeellLEEADEKEKEENNKEEEEERNKRLLL 967
|
330 340
....*....|....*....|....
gi 1720428054 768 QRQHQSDLKMLAAKESQLREFQEE 791
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYN 991
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
251-799 |
4.24e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 251 LQEQKDSQCLHVEEYQNLVKDLR---MELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKD--KETVFLQYRLQDL 325
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKssnLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNnlKSALNELSSLEDM 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 326 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtSLQEARQSTSKIDcealrAEIQ 405
Cdd:PRK01156 251 KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKN---DIENKKQILSNID-----AEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 406 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEdahrkiencllqdkqKEEVIKDLQSQLHKLQKESSKIEEERKHNR 485
Cdd:PRK01156 323 KYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILE---------------LEGYEMDYNSYLKSIESLKKKIEEYSKNIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 486 QRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE-EELLEIKG--LLEEKR 562
Cdd:PRK01156 388 RMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgQSVCPVCGttLGEEKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 563 EQLKKSKEQEKA-LEEEI-----------EALRQEAKRKEKMAKEHLRKL---DEEKENLQAELTS---RSSHLDSSLNK 624
Cdd:PRK01156 468 NHIINHYNEKKSrLEEKIreieievkdidEKIVDLKKRKEYLESEEINKSineYNKIESARADLEDikiKINELKDKHDK 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 625 YNSSQKVIQELNAEIARQK-DSIMILQTQLDS----AIQKEKNCFQNMVsKEAYEELVRKSGNCQDDLTQALEKLTQATS 699
Cdd:PRK01156 548 YEEIKNRYKSLKLEDLDSKrTSWLNALAVISLidieTNRSRSNEIKKQL-NDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 700 ETKSLNRSLQQTQERKAQLED---EIAAYEER---MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ- 772
Cdd:PRK01156 627 EANNLNNKYNEIQENKILIEKlrgKIDNYKKQiaeIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEi 706
|
570 580
....*....|....*....|....*....
gi 1720428054 773 --SDLKMLAAKESQLREFQEEMATLRESL 799
Cdd:PRK01156 707 lrTRINELSDRINDINETLESMKKIKKAI 735
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
558-799 |
4.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 558 LEEKREQLKKSKEQEKALEEeIEALRQEAKRkekmAKEHLRKLDEEKENLQAELTSRsshldsslnKYNSSQKVIQELNA 637
Cdd:COG4913 237 LERAHEALEDAREQIELLEP-IRELAERYAA----ARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 638 EIARQKDSIMILQTQLDSAIQKEkncfqnmvskEAYEELVRKSGncqddlTQALEKLtqatsetkslnrslqqtQERKAQ 717
Cdd:COG4913 303 ELARLEAELERLEARLDALREEL----------DELEAQIRGNG------GDRLEQL-----------------EREIER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 718 LEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE 797
Cdd:COG4913 350 LERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
..
gi 1720428054 798 SL 799
Cdd:COG4913 430 SL 431
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
545-894 |
4.86e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 545 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLD--SSL 622
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLL 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 623 NKYNSSQKVIQELnaEIARQKdsimilQTQLDSAIQKEKNCFQnmVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETK 702
Cdd:COG5022 865 KKETIYLQSAQRV--ELAERQ------LQELKIDVKSISSLKL--VNLELESEIIELKKSLSSDLIENLEFKTELIARLK 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 703 SLNRSLQ---------QTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS---EQEVHNFDKKLEEmsnqvlqwqrq 770
Cdd:COG5022 935 KLLNNIDleegpsieyVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGnkaNSELKNFKKELAE----------- 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 771 HQSDLKMLAAKESQLREFQEEMATLResllADEKEPYSPPAKLtpketcrhhrendQIMNNVEqwakEQKIANEKLGNKL 850
Cdd:COG5022 1004 LSKQYGALQESTKQLKELPVEVAELQ----SASKIISSESTEL-------------SILKPLQ----KLKGLLLLENNQL 1062
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720428054 851 REQVKYIaKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAGN 894
Cdd:COG5022 1063 QARYKAL-KLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTN 1105
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
544-640 |
5.14e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 544 IRKLEEELLEikglLEEKREQLKKskEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSShLDSSLN 623
Cdd:COG0542 413 LDELERRLEQ----LEIEKEALKK--EQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE-LEQRYG 485
|
90
....*....|....*..
gi 1720428054 624 KYNSSQKVIQELNAEIA 640
Cdd:COG0542 486 KIPELEKELAELEEELA 502
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
294-644 |
5.31e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 294 ELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEK 373
Cdd:COG4372 12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 374 LQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-- 449
Cdd:COG4372 92 AQAELAQAQEELESLQEEAEELqeELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALeq 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 450 ---LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 526
Cdd:COG4372 172 elqALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 527 FHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKEN 606
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
330 340 350
....*....|....*....|....*....|....*...
gi 1720428054 607 LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 644
Cdd:COG4372 332 LAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
12-730 |
6.19e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 12 KGLKNEAGERDRDVSNLNSKLLSLQLDIKNLHDVCKRQGKTLQENQLCVEEAMLKANHNKKQAQTLvftDNQMDFRVNKQ 91
Cdd:TIGR00606 401 ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL---EGSSDRILELD 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 92 YHLRqlqqlkkklltlQQELEFRTQELQASYCSLLQYQSILEKQTSDLLvlhrHCKLKEDEDPENKGDHPKVRIYTSPCV 171
Cdd:TIGR00606 478 QELR------------KAERELSKAEKNSLTETLKKEVKSLQNEKADLD----RKLRKLDQEMEQLNHHTTTRTQMEMLT 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 172 IQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLER------EEALIKLQAEFASYTATHRHpptSSEDCEDIT 245
Cdd:TIGR00606 542 KDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSkeinqtRDRLAKLNKELASLEQNKNH---INNELESKE 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 246 KILKHLQEQKDSQClHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETS--CVIEKKDKET-VFLQYRL 322
Cdd:TIGR00606 619 EQLSSYEDKLFDVC-GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQscCPVCQRVFQTeAELQEFI 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 323 QDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidceaLRA 402
Cdd:TIGR00606 698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR------------LKN 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 403 EIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSaSSLEDAHRKIENCLLQ------DKQKEEVIKDLQSQLHKLQKESSK 476
Cdd:TIGR00606 766 DIEEQETLLGTIMPEEESAKVCLTDVTIMERFQ-MELKDVERKIAQQAAKlqgsdlDRTVQQVNQEKQEKQHELDTVVSK 844
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 477 IE------EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhsTQVSEQKQRELTNSIRKleee 550
Cdd:TIGR00606 845 IElnrkliQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI--REIKDAKEQDSPLETFL---- 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 551 lleiKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 630
Cdd:TIGR00606 919 ----EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQE 994
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 631 VIQE----LNAEIARQKDSIMILQTQLDSAIQKEKncfqnmvSKEAYEELVRKSGNC-QDDLTQALEKLTQATSETKSLN 705
Cdd:TIGR00606 995 KINEdmrlMRQDIDTQKIQERWLQDNLTLRKRENE-------LKEVEEELKQHLKEMgQMQVLQMKQEHQKLEENIDLIK 1067
|
730 740
....*....|....*....|....*
gi 1720428054 706 RSLQQTQERKAQLEDEIAAYEERMK 730
Cdd:TIGR00606 1068 RNHVLALGRQKGYEKEIKHFKKELR 1092
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
344-710 |
6.59e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.13 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 344 QDKDERLHELEKNLMQVQNS--LREKEAELEKLQCTTKELDtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVS 421
Cdd:pfam09731 124 QEKEKALEEVLKEAISKAESatAVAKEAKDDAIQAVKAHTD-SLKEASDTAEISREKATDSALQKAEALAEKLKEVINLA 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 422 DQNLTQSKeeahlsASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQ----ELSSELSE 497
Cdd:pfam09731 203 KQSEEEAA------PPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQQELVsifpDIIPVLKE 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 498 GQrrLSNAEKEKSLLQKTLDEDEKkidelfHSTQVSEQKQRELtnsiRKLEEELLEIKGLLEEKREQLkkSKEQEKALEE 577
Cdd:pfam09731 277 DN--LLSNDDLNSLIAHAHREIDQ------LSKKLAELKKREE----KHIERALEKQKEELDKLAEEL--SARLEEVRAA 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 578 EIEALRQEAKRKEkmakEHLRKLDEEKenLQAELTSRSSHLDSSLNKYNSSQKviQELNAEIARqkdsimilqtQLDSAI 657
Cdd:pfam09731 343 DEAQLRLEFERER----EEIRESYEEK--LRTELERQAEAHEEHLKDVLVEQE--IELQREFLQ----------DIKEKV 404
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1720428054 658 QKEKNCFQNMVSkEAYEELvrksgncqddltQALEKLTQATSETKSLNRSLQQ 710
Cdd:pfam09731 405 EEERAGRLLKLN-ELLANL------------KGLEKATSSHSEVEDENRKAQQ 444
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
353-634 |
6.70e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.41 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 353 LEKnLMQVQNSLREKEAELEKLQCTT------KELDtSLQEARQSTSKIDcEALRAEIQKLK-----DSLEEAREQLKVS 421
Cdd:PTZ00108 1101 KEK-VEKLNAELEKKEKELEKLKNTTpkdmwlEDLD-KFEEALEEQEEVE-EKEIAKEQRLKsktkgKASKLRKPKLKKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 422 DQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSqlhklqkESSKIEEERKHNRQRLQELSSELSEGQRR 501
Cdd:PTZ00108 1178 EKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSS-------GSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 502 LSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQrelTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEA 581
Cdd:PTZ00108 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPP---PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKS 1327
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1720428054 582 lRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 634
Cdd:PTZ00108 1328 -EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
620-868 |
7.15e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 620 SSLNKYNSSQkvIQELNAEIARQKDSIMILQTQLDsaIQKEkncFQNMVSKEAYEELVRKSgncqddltqalEKLTQATS 699
Cdd:PHA02562 166 SEMDKLNKDK--IRELNQQIQTLDMKIDHIQQQIK--TYNK---NIEEQRKKNGENIARKQ-----------NKYDELVE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 700 ETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfQQQSEQEVHNF-----------------DKKLEEMSN 762
Cdd:PHA02562 228 EAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS-KIEQFQKVIKMyekggvcptctqqisegPDRITKIKD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 763 QVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE--SLLADEKEPYSppakltpketcRHHRENDQIMNNVEQWAKEQK 840
Cdd:PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLElkNKISTNKQSLI-----------TLVDKAKKVKAAIEELQAEFV 375
|
250 260 270
....*....|....*....|....*....|.
gi 1720428054 841 IANE---KLGNKLREQVKYIAKLTGEKDHLH 868
Cdd:PHA02562 376 DNAEelaKLQDELDKIVKTKSELVKEKYHRG 406
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
481-760 |
7.36e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 481 RKHNRQRLQELSSELSEGQRRLSNA----EKEKSLL-------QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE 549
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESnelhEKQKFYLrqsvidlQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 550 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQaelTSRSSHLDSSLNKynssq 629
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMS---TMHFRSLGSAISK----- 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 630 kVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSK--EAYEELVRKSgncQDDLTQALEKLTQATSETKSLNRS 707
Cdd:pfam15921 225 -ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQhqDRIEQLISEH---EVEITGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 708 LQQTQER-----------------------------KAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLE 758
Cdd:pfam15921 301 LEIIQEQarnqnsmymrqlsdlestvsqlrselreaKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ 380
|
..
gi 1720428054 759 EM 760
Cdd:pfam15921 381 KL 382
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
400-882 |
7.37e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 400 LRAEIQKLKDsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 479
Cdd:PRK01156 178 LRAEISNIDY----LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 480 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN----------SIRKLEE 549
Cdd:PRK01156 254 YESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNidaeinkyhaIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 550 ------ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSrSSHLDSSLN 623
Cdd:PRK01156 334 lqkdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEID-PDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 624 KYNSSqkvIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNM---------------VSKEAYEELVRKSGNcqdDLT 688
Cdd:PRK01156 413 EINVK---LQDISSKVSS-------LNQRIRALRENLDELSRNMemlngqsvcpvcgttLGEEKSNHIINHYNE---KKS 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 689 QALEKLTQATSETKSLNRSLQQTQERKAQLE----DEIAAYEERMKKLNMELKKLQgfqqQSEQEVHNFDKKLEEMSNQV 764
Cdd:PRK01156 480 RLEEKIREIEIEVKDIDEKIVDLKKRKEYLEseeiNKSINEYNKIESARADLEDIK----IKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 765 ----LQWQRQHQSD-LKMLA--------AKESQLREFQEEMATLRESLlaDEKEPYSPPAKLTPKETCRHHRENDQIMNN 831
Cdd:PRK01156 556 kslkLEDLDSKRTSwLNALAvislidieTNRSRSNEIKKQLNDLESRL--QEIEIGFPDDKSYIDKSIREIENEANNLNN 633
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 832 VEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLK 882
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
419-595 |
7.65e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 38.71 E-value: 7.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 419 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 498
Cdd:pfam12072 23 SIAEAKIGSAEELA---KRIIEEAKKEAET------KKKEALLEAKEEIHKLRAE---AERELKERRNELQRQERRL--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 499 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEKALE- 576
Cdd:pfam12072 88 LQKEETLDRKDESLEKKEESLEKKEKELEAQQQQLEEKEEELEELIEEQRQELERISGLtSEEAKEILLDEVEEELRHEa 167
|
170 180
....*....|....*....|.
gi 1720428054 577 -EEIEALRQEAKRK-EKMAKE 595
Cdd:pfam12072 168 aVMIKEIEEEAKEEaDKKAKE 188
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
513-642 |
8.30e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.56 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 513 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE-------IKGLLEEKREQLKKSKEQEKALEEEIEALRQE 585
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAaeaersrLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428054 586 AKRkekmAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVI----QELNAEIARQ 642
Cdd:PRK09039 132 SAR----ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIadlgRRLNVALAQR 188
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
234-448 |
8.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 234 PPTSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDK 313
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 314 ETVFLQYRLQDLQQQYTE----SQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEAR 389
Cdd:COG4942 91 EIAELRAELEAQKEELAEllraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428054 390 QSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIEN 448
Cdd:COG4942 171 AERAEL--EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
398-738 |
8.95e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 39.84 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 398 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 477
Cdd:PLN03229 425 EAVKTPVRELEGEVEKLKEQILKAKESSSKPSELA------LNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 478 EEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKtLDedekKIDELFHSTQVSEQKQR--ELTNSIRKLEEELLEi 554
Cdd:PLN03229 499 NSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNYLSLKYK-LD----MLNEFSRAKALSEKKSKaeKLKAEINKKFKEVMD- 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 555 KGLLEEKREQLKKSKEQEKAleEEIEALRQEAKRK-EKMAKEHLRKLDE--EKENLQAELTSRSSHLDSSLNKYNSSQKV 631
Cdd:PLN03229 573 RPEIKEKMEALKAEVASSGA--SSGDELDDDLKEKvEKMKKEIELELAGvlKSMGLEVIGVTKKNKDTAEQTPPPNLQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 632 IQELNAEIARQKDSImILQTQLDSAIQKEKncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQT 711
Cdd:PLN03229 651 IESLNEEINKKIERV-IRSSDLKSKIELLK------------LEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSEL 717
|
330 340
....*....|....*....|....*..
gi 1720428054 712 QERKAQLEDEIAAYEERMKKLNMELKK 738
Cdd:PLN03229 718 KEKFEELEAELAAARETAAESNGSLKN 744
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
563-661 |
9.00e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 563 EQLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQ 642
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKE---QDEASFERLAELRDELAELEEELEA----LKARWEAEKELIEEIQELKEELEQR 483
|
90
....*....|....*....
gi 1720428054 643 KDSIMILQTQLDSAIQKEK 661
Cdd:COG0542 484 YGKIPELEKELAELEEELA 502
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
314-613 |
9.91e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 39.84 E-value: 9.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 314 ETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLH-ELEKNLMQVQNSLREKEaELEKLQCTTKELDTSLQEARQst 392
Cdd:PLN03229 480 IAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNYLSLKY-KLDMLNEFSRAKALSEKKSKA-- 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 393 skidcEALRAEI-QKLKDSLE--EAREQLKVSDQNLTQSKeeahlsASSLEDahrkienclLQDKQKEEVIKdlqsqlhk 469
Cdd:PLN03229 557 -----EKLKAEInKKFKEVMDrpEIKEKMEALKAEVASSG------ASSGDE---------LDDDLKEKVEK-------- 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428054 470 lqkesskieeerkHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEK-KIDELfhstqvSEQKQRELTNSIRkl 547
Cdd:PLN03229 609 -------------MKKEIELELAGVLkSMGLEVIGVTKKNKDTAEQTPPPNLQeKIESL------NEEINKKIERVIR-- 667
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428054 548 eeeLLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLrKLDEEKENLQAELTS 613
Cdd:PLN03229 668 ---SSDLKSKIELlKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSS-ELKEKFEELEAELAA 730
|
|
| |
