|
Name |
Accession |
Description |
Interval |
E-value |
| Ubl_RB1CC1 |
cd17060 |
ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) ... |
2-76 |
4.67e-40 |
|
ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins; RB1CC1, also termed FAK family kinase-interacting protein of 200 kDa (FIP200), is the mammalian counterpart of the yeast Atg17 gene and functions as a component of the ULK1/Atg13/RB1CC1/Atg101 complex essential for induction of autophagy. RB1CC1 is a key signaling node to regulate cellular proliferation and differentiation. As a DNA-binding transcription factor, RB1CC1 has been implicated in the regulation of retinoblastoma 1 (RB1) expression. RB1CC1 contains a conserved ubiquitin-like (Ubl) domain with a beta-grasp Ubl fold, as well as a nuclear localization signal (KPRK), a leucine zipper motif and a coiled-coil structure.
Pssm-ID: 340580 Cd Length: 75 Bit Score: 142.70 E-value: 4.67e-40
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622958758 2 KLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTYSAGTDTNPIFLFNK 76
Cdd:cd17060 1 MLYVFLVNTGTMLTFDMSLAVQSVSDLKEAIEEKTKIPVEKQVLLVSGGESLDPDKRVSSYSAGTDTNPIFLFNK 75
|
|
| ATG11 |
pfam10377 |
Autophagy-related protein 11; The function of this family is conflicting. In the fission yeast, ... |
1439-1588 |
1.17e-27 |
|
Autophagy-related protein 11; The function of this family is conflicting. In the fission yeast, Schizosaccharomyces pombe, this protein has been shown to interact with the telomere cap complex and it is also required for dimerization and kinase activation of Atg1. However, in budding yeast, Saccharomyces cerevisiae, this protein is called ATG11 and is shown to be involved in autophagy.
Pssm-ID: 463063 Cd Length: 130 Bit Score: 109.23 E-value: 1.17e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1439 ETSMMSVQENIHMLS-----EEKQRIMLLERTLQLKEEenkrlnqrlmsqsmssvssrhseKIAIRDFQVGDLVLIILDE 1513
Cdd:pfam10377 1 ESAVIKRFKDVETLAkkltkENKSKREKLEKLQSEAHE-----------------------KITLKNFKVGDLALFLPTR 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1514 RHDN-----YVLFTVSPTLYFLHSESLPALdlkpgegasgaSRRPWVLGKVMEKEYCQAK---KAQNRFKVPLGTKFYRV 1585
Cdd:pfam10377 58 RHNDlstppWAAFNVGAPHYFLKADSLLAL-----------KSREWFVGRITSIEERVVDlsdKDSNPFKLSKGTVWYLV 126
|
...
gi 1622958758 1586 KAV 1588
Cdd:pfam10377 127 TAE 129
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
871-1356 |
1.85e-16 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 85.46 E-value: 1.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 871 KNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKDQKLLEMENIMHsqncEIKE 950
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEE---LENELNLLEKEKLNIQK----NIDK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 951 LKQSR---EIVLEDLKKLhvenDEKLQLLRAELQSLEQ--SHLKELEDTLQVRhIQEFEKVMTDHRISLEELKKENQQII 1025
Cdd:TIGR04523 192 IKNKLlklELLLSNLKKK----IQKNKSLESQISELKKqnNQLKDNIEKKQQE-INEKTTEISNTQTQLNQLKDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1026 NQIQ------ESHAAVIQEKEQQLQELKLKVSDLSdmrcklevelalKEAETDEIKILLEESRAQQKetlkslleqETEN 1099
Cdd:TIGR04523 267 KQLSekqkelEQNNKKIKELEKQLNQLKSEISDLN------------NQKEQDWNKELKSELKNQEK---------KLEE 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1100 LRTEISKLNQKIQDNNEnyqvglaelrTLMTIEKDqciselISRHEEESSILKAELNKVTSlhhqafEIENTLKEQIIEL 1179
Cdd:TIGR04523 326 IQNQISQNNKIISQLNE----------QISQLKKE------LTNSESENSEKQRELEEKQN------EIEKLKKENQSYK 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1180 QS--KLNSELSALEkQKDEKITQQEEKYEAIIQNLEKDKQKLviSQEQDR-EQLIQKLNCEKDEaiqtaLKEFILEREVV 1256
Cdd:TIGR04523 384 QEikNLESQINDLE-SKIQNQEKLNQQKDEQIKKLQQEKELL--EKEIERlKETIIKNNSEIKD-----LTNQDSVKELI 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1257 EKQLLEKVKHLENQIAK-SPAIDSTREDSSSLVAELQEKLQEekakfLEQLEEQEKRKNEEMQNVrTSLIAEQQTNFNTv 1335
Cdd:TIGR04523 456 IKNLDNTRESLETQLKVlSRSINKIKQNLEQKQKELKSKEKE-----LKKLNEEKKELEEKVKDL-TKKISSLKEKIEK- 528
|
490 500
....*....|....*....|.
gi 1622958758 1336 LTREKMRKENIINDLSDKLKS 1356
Cdd:TIGR04523 529 LESEKKEKESKISDLEDELNK 549
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
847-1374 |
3.47e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 81.22 E-value: 3.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 847 IIEKVKCSLEITLKE--KHQKELQSLKNEYegklDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFaLVKHEKEAVI 924
Cdd:TIGR04523 132 QKKENKKNIDKFLTEikKKEKELEKLNNKY----NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL-LKLELLLSNL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 925 CLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQS-LEQSHLKELEDTLQVRHIQEF 1003
Cdd:TIGR04523 207 KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKiKKQLSEKQKELEQNNKKIKEL 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1004 EKVMTDHRISLEELKKENQQIINQIQESHaavIQEKEQQLQELKLK-------VSDLSDMRCKLEVELALKEAETDEIKI 1076
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQKEQDWNKELKSE---LKNQEKKLEEIQNQisqnnkiISQLNEQISQLKKELTNSESENSEKQR 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1077 LLEEsRAQQKETLKSLLE---QETENLRTEISKLNQKIQDNNENYQvglaelrtlmtiEKDQCISELISRH---EEESSI 1150
Cdd:TIGR04523 364 ELEE-KQNEIEKLKKENQsykQEIKNLESQINDLESKIQNQEKLNQ------------QKDEQIKKLQQEKellEKEIER 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1151 LKAELNKvtslhhQAFEIENtLKEQIIELQSKLNsELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVisqeqDREQL 1230
Cdd:TIGR04523 431 LKETIIK------NNSEIKD-LTNQDSVKELIIK-NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK-----SKEKE 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1231 IQKLNCEKdeaiqtalkefilerevveKQLLEKVKHLENQIAKSpaidstredssslvAELQEKLQEEKAKFLEQLEEQE 1310
Cdd:TIGR04523 498 LKKLNEEK-------------------KELEEKVKDLTKKISSL--------------KEKIEKLESEKKEKESKISDLE 544
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1311 KRKNEEMQNVRTSLIA----------EQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSED 1374
Cdd:TIGR04523 545 DELNKDDFELKKENLEkeideknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
857-1321 |
4.12e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 80.83 E-value: 4.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 857 ITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLE 936
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 937 MENIMHSQNCEIKELKQSREIVL-EDLKKLHVENDEKLQLLRAELQSLEQShlkeledtlqvrhIQEFEKVMTDHRISLE 1015
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDWnKELKSELKNQEKKLEEIQNQISQNNKI-------------ISQLNEQISQLKKELT 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1016 ELKKENQQIINQIQESHAAVIQEKEQQlQELKLKVSDLSDMRCKLEVELALKEAETDEIkilleESRAQQKETLKSLLEQ 1095
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKEN-QSYKQEIKNLESQINDLESKIQNQEKLNQQK-----DEQIKKLQQEKELLEK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1096 ETENLRTEISKLNQKIQD-NNENYQVGLA--ELRTLMTIEKDQC--ISELISRHEEESSILKAELNKVTS----LHHQAF 1166
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDlTNQDSVKELIikNLDNTRESLETQLkvLSRSINKIKQNLEQKQKELKSKEKelkkLNEEKK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1167 EIENT---LKEQIIELQSKLNsELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDR-EQLiqKLNCEKDEAI 1242
Cdd:TIGR04523 507 ELEEKvkdLTKKISSLKEKIE-KLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEiEEL--KQTQKSLKKK 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1243 QTALKEFIlerevveKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKF---LEQLEEQEKRKNEEMQN 1319
Cdd:TIGR04523 584 QEEKQELI-------DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIkskKNKLKQEVKQIKETIKE 656
|
..
gi 1622958758 1320 VR 1321
Cdd:TIGR04523 657 IR 658
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
856-1367 |
4.12e-15 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 81.25 E-value: 4.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 856 EITLKEKHQKELQSLKNEYEGKLDALIKETEENE--NKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQK 933
Cdd:TIGR00606 492 KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEqlNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 934 LLEMENIMHSQNCEIKELKQSreivLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRIS 1013
Cdd:TIGR00606 572 KKQLEDWLHSKSKEINQTRDR----LAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEE 647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1014 LEELKKEN----------QQIINQIQESHAA---VIQEKEQQLQELKLKVSDLSDM-------RCKLEVELALKEAETDE 1073
Cdd:TIGR00606 648 IEKSSKQRamlagatavySQFITQLTDENQSccpVCQRVFQTEAELQEFISDLQSKlrlapdkLKSTESELKKKEKRRDE 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1074 IKILLEesraqQKETLKSLLEQETENLRTEISKLNQKIQDNNENyqvglaelrtlmtIEKDQCISELISRHEEESSILKA 1153
Cdd:TIGR00606 728 MLGLAP-----GRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND-------------IEEQETLLGTIMPEEESAKVCLT 789
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1154 ELNKVTSLHHQAFEIENTLKEQIIELQSklnSELSALEKQKDEKITQQEEKYEAIIQNLEKDkQKLVISQEQDREQLIQK 1233
Cdd:TIGR00606 790 DVTIMERFQMELKDVERKIAQQAAKLQG---SDLDRTVQQVNQEKQEKQHELDTVVSKIELN-RKLIQDQQEQIQHLKSK 865
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1234 LNCEKDEAIQtaLKEFILEREVVEKQLLEKVKHLENQIAkspAIDSTREDSSSLvAELQEKLQEEKAKFLEQLEEQEKRK 1313
Cdd:TIGR00606 866 TNELKSEKLQ--IGTNLQRRQQFEEQLVELSTEVQSLIR---EIKDAKEQDSPL-ETFLEKDQQEKEELISSKETSNKKA 939
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1314 NEEMQNVRTSL---IAEQQTNFNTV---LTREKMRKENIINDLSDKLKSTMQQQER-DKDL 1367
Cdd:TIGR00606 940 QDKVNDIKEKVkniHGYMKDIENKIqdgKDDYLKQKETELNTVNAQLEECEKHQEKiNEDM 1000
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
859-1344 |
9.31e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 76.70 E-value: 9.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 859 LKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVIC-LQNE-------K 930
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSqLRSElreakrmY 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 931 DQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQ------SLEQSHLKEL--EDTLQVRHIQE 1002
Cdd:pfam15921 341 EDKIEELEKQLVLANSELTEARTERDQFSQESGNL----DDQLQKLLADLHkrekelSLEKEQNKRLwdRDTGNSITIDH 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1003 FEKVMTDHRISLEELKKENQQIINQIQ---ESHAAVIQEKEQQLQE---LKLKVSDLSDMRCKLEVELALKeaetdeiKI 1076
Cdd:pfam15921 417 LRRELDDRNMEVQRLEALLKAMKSECQgqmERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAK-------KM 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1077 LLEESRAQQKETLKSLLEQE--TENLRTEISKLNQKI-------------QDNNENYQVGLAELRTLMTiEKDQCISELI 1141
Cdd:pfam15921 490 TLESSERTVSDLTASLQEKEraIEATNAEITKLRSRVdlklqelqhlkneGDHLRNVQTECEALKLQMA-EKDKVIEILR 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1142 SRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQsklnsELSALEKQKDEKITQQEEKyeaiIQNLEKDKQKLVi 1221
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-----EFKILKDKKDAKIRELEAR----VSDLELEKVKLV- 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1222 SQEQDREQLIQKLNCEKDeaiqtalkefilerevvekQLLEKVKHLENQiakspaIDSTREDSSSLVAELQEKlQEEKAK 1301
Cdd:pfam15921 639 NAGSERLRAVKDIKQERD-------------------QLLNEVKTSRNE------LNSLSEDYEVLKRNFRNK-SEEMET 692
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1622958758 1302 FLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKE 1344
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQ 735
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1035-1362 |
5.47e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 5.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1035 VIQEKEQQLQELK------LKVSDLSDMRCKLEVELAL-------KEAETDEIKILLEESRAQQKETLKSLLEQETENLR 1101
Cdd:COG1196 194 ILGELERQLEPLErqaekaERYRELKEELKELEAELLLlklreleAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1102 TEISKLNQKIQDNNENYQVGLAELRTLmtiEKDqciselISRHEEESSILKAELNKvtslhhqafeientLKEQIIELQS 1181
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARL---EQD------IARLEERRRELEERLEE--------------LEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1182 KLnSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLViSQEQDREQLIQKLncekdEAIQTALKEFILEREVVEKQLL 1261
Cdd:COG1196 331 EL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALL-EAEAELAEAEEEL-----EELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1262 EKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKM 1341
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340
....*....|....*....|.
gi 1622958758 1342 RKENIINDLSDKLKSTMQQQE 1362
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
926-1315 |
7.58e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 7.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 926 LQNEKD---QKLLEMENIMHSQNCEIKELKQS---REIVLEDLKKLHVENDEKLQLLRAELQSLEQ--SHLKELEDTLQV 997
Cdd:TIGR02169 686 LKRELSslqSELRRIENRLDELSQELSDASRKigeIEKEIEQLEQEEEKLKERLEELEEDLSSLEQeiENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 998 RhIQEFEKVMTDHRISLEELK-KENQQIINQIQEShaavIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKI 1076
Cdd:TIGR02169 766 R-IEELEEDLHKLEEALNDLEaRLSHSRIPEIQAE----LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1077 LLEESRAQQKEtlkslLEQETENLRTEISKLNQKIqdnnENYQVGLAELRT-LMTIEKDqciselISRHEEESSILKAEL 1155
Cdd:TIGR02169 841 QRIDLKEQIKS-----IEKEIENLNGKKEELEEEL----EELEAALRDLESrLGDLKKE------RDELEAQLRELERKI 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1156 NKVTSLHHQAFEIENTLKEQIielqSKLNSELSALEKQKDEKITQQEEkyEAIIQNLEKDKQKLvisqeqdrEQLIQKLN 1235
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKL----EALEEELSEIEDPKGEDEEIPEE--ELSLEDVQAELQRV--------EEEIRALE 971
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1236 CEKDEAIQtalkefilEREVVEKQLLEkvkhlenqiakspaidstredssslVAELQEKLQEEKAKFLEQLEEQEKRKNE 1315
Cdd:TIGR02169 972 PVNMLAIQ--------EYEEVLKRLDE-------------------------LKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
929-1259 |
7.64e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 7.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 929 EKDQKLLEMENImhSQNCEIKELKQsrEIVLEDLKKLHVENDEKL--QLLRAELQSLEQS-HLKELEDTlqVRHIQEFEK 1005
Cdd:TIGR02169 171 KKEKALEELEEV--EENIERLDLII--DEKRQQLERLRREREKAEryQALLKEKREYEGYeLLKEKEAL--ERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1006 vmtdhriSLEELKKENQQIINQIQEShAAVIQEKEQQLQELKLKVSDLSDMRC--------KLEVELALKEAETDEIKIL 1077
Cdd:TIGR02169 245 -------QLASLEEELEKLTEEISEL-EKRLEEIEQLLEELNKKIKDLGEEEQlrvkekigELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1078 LEESRAQQKEtlkslLEQETENLRTEISKLNQKIQDNNenyqvglaelrtlmtIEKDQCISELISRhEEESSILKAELNK 1157
Cdd:TIGR02169 317 LEDAEERLAK-----LEAEIDKLLAEIEELEREIEEER---------------KRRDKLTEEYAEL-KEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1158 VTSLHHQAFEIENTLKEQIIELQSKLNS------ELSALEKQKDEKITQQEEKYEAIIQNLE------KDKQKLVISQEQ 1225
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINElkreldRLQEELQRLSEELADLNAAIAGIEAKINeleeekEDKALEIKKQEW 455
|
330 340 350
....*....|....*....|....*....|....
gi 1622958758 1226 DREQLIQKLNCEKDEAIQTALKEFILEREVVEKQ 1259
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
953-1315 |
1.54e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 953 QSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSH--LKELEDTLQVRhIQEFEKVMTDHRISLEELKKENQQIINQIQE 1030
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELeeLEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1031 SHAAvIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKEtlkslLEQETENLRTEISKLNQK 1110
Cdd:TIGR02168 752 LSKE-LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE-----LRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1111 IQDNnenyqvglaELRTLMTIEKDQCISELISRHEEESSILKAELNKVTSLhhqafeiENTLKEQIIELQSKLNSELSAL 1190
Cdd:TIGR02168 826 LESL---------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL-------IEELESELEALLNERASLEEAL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1191 EKQKDEKITQQEEkyeaiIQNLEKDKQKLvisqEQDREQLIQKLNcekdeAIQTALKEFILEREVVEKQLLEKVK-HLEN 1269
Cdd:TIGR02168 890 ALLRSELEELSEE-----LRELESKRSEL----RRELEELREKLA-----QLELRLEGLEVRIDNLQERLSEEYSlTLEE 955
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1270 QIAKSPAIDSTREDSSSLVAELQEKLQE-----EKAkfLEQLEEQEKRKNE 1315
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKElgpvnLAA--IEEYEELKERYDF 1004
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
883-1219 |
1.82e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 883 KETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEaviclqnEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDL 962
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELE-------QLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 963 KKLHVENDEKLQLLRAELQSLEQS--HLKELEDtlqvrHIQEFEKVMTDHRISLEELKKEnqqiinqiqeshaavIQEKE 1040
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAeeELAEAEA-----EIEELEAQIEQLKEELKALREA---------------LDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1041 QQLQELKLKVSDLSDMRCKLEVELALKEAETDEikilLEESRAQQKETLKSlLEQETENLRTEISKLNQKIQDNNENY-- 1118
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLED----LEEQIEELSEDIES-LAAEIEELEELIEELESELEALLNERas 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1119 -QVGLAELRTLMTIEKDQciselISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSALE---KQK 1194
Cdd:TIGR02168 885 lEEALALLRSELEELSEE-----LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLeeaEAL 959
|
330 340
....*....|....*....|....*
gi 1622958758 1195 DEKITQQEEKYEAIIQNLEKDKQKL 1219
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
855-1393 |
3.27e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 3.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 855 LEITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALV-----------KHEKEAV 923
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELlaelarleqdiARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 924 ICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEF 1003
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1004 EKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKEQQLQELKLKVSDLsdmrcKLEVELALKEAETDEIKILLEESRA 1083
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-----EALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1084 QQKETLKSLLEQETENLRTEISKLNQK-----IQDNNENYQVGLAELRTL-MTIEKDQCISELISRHEEESSILKAELNK 1157
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLlllleAEADYEGFLEGVKAALLLaGLRGLAGAVAVLIGVEAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1158 VtsLHHQAFEIENTLKEQIIELQSKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCE 1237
Cdd:COG1196 547 A--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1238 KDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEM 1317
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622958758 1318 QNVRTSLIAEQQTnfntvltREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLEEEVSKLR 1393
Cdd:COG1196 705 EERELAEAEEERL-------EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
888-1371 |
4.68e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 70.82 E-value: 4.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 888 NENKIKKLKGELVCLEEVLQNKDNEFALVkhekeaviclqnekDQKLLEMENIMHSQNCEIKELKQSreivLEDLKKLHV 967
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNL--------------DKNLNKDEEKINNSNNKIKILEQQ----IKDLNDKLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 968 ENDEKLQLLRAELQSLEqshlKELEDTLQVRHIQEFEKvmtdhrISLEELKKENQQIINQIQEShaavIQEKEQQLQELK 1047
Cdd:TIGR04523 93 KNKDKINKLNSDLSKIN----SEIKNDKEQKNKLEVEL------NKLEKQKKENKKNIDKFLTE----IKKKEKELEKLN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1048 LKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQ--QKETLKSLLE---QETENLRTEISKLNQK---IQDNNENYQ 1119
Cdd:TIGR04523 159 NKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKllKLELLLSNLKkkiQKNKSLESQISELKKQnnqLKDNIEKKQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1120 VGLAELRTLMTIEKDQcISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEqiielqskLNSELSALEKQKDEKIT 1199
Cdd:TIGR04523 239 QEINEKTTEISNTQTQ-LNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ--------LKSEISDLNNQKEQDWN 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1200 QqeeKYEAIIQNLEKDKQKLViSQEQDREQLIQKLNcEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQI----AKSP 1275
Cdd:TIGR04523 310 K---ELKSELKNQEKKLEEIQ-NQISQNNKIISQLN-EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKkenqSYKQ 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1276 AIDSTREDSSSLVAEL--QEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNtvLTREKMRKENIINDLSDK 1353
Cdd:TIGR04523 385 EIKNLESQINDLESKIqnQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD--LTNQDSVKELIIKNLDNT 462
|
490
....*....|....*...
gi 1622958758 1354 LKSTMQQQERDKDLIESL 1371
Cdd:TIGR04523 463 RESLETQLKVLSRSINKI 480
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
856-1377 |
5.84e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 5.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 856 EITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEfalVKHEKEAVICLQNEKDQKLL 935
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ---KQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 936 EMENIMHSQNCEIKELKQSREIvLEDLKKLHVENDEKLQLLRAELQSLEqSHLKELEDTL--QVRHIQEFEKVMTDHRIS 1013
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEK-LEELKEELESLEAELEELEAELEELE-SRLEELEEQLetLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1014 LEELKKEnqqiINQIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLL 1093
Cdd:TIGR02168 402 IERLEAR----LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1094 EQETENLRTEISKLN--QKIQDNNENYQVGLAEL----RTLMTIekDQCISELISRHEEE-------------------- 1147
Cdd:TIGR02168 478 DAAERELAQLQARLDslERLQENLEGFSEGVKALlknqSGLSGI--LGVLSELISVDEGYeaaieaalggrlqavvvenl 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1148 -------SSILKAELNKVTSL---HHQAFEIENTLKEQI----------------------------------------I 1177
Cdd:TIGR02168 556 naakkaiAFLKQNELGRVTFLpldSIKGTEIQGNDREILkniegflgvakdlvkfdpklrkalsyllggvlvvddldnaL 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1178 ELQSKLNSE-------------------------LSALEKQKD-EKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLI 1231
Cdd:TIGR02168 636 ELAKKLRPGyrivtldgdlvrpggvitggsaktnSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1232 QKLNCEKDEAIQTALKEFILEREVVEKQLLEKV-----KHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKF---- 1302
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERiaqlsKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlk 795
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622958758 1303 --LEQLEEQEKRKNEEMQNVRTSliAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:TIGR02168 796 eeLKALREALDELRAELTLLNEE--AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
835-1228 |
9.88e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 9.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 835 NSLKCTAVEIRNIIEKVK--------CSLEITlkEKHQKELqslKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVL 906
Cdd:PRK03918 415 GELKKEIKELKKAIEELKkakgkcpvCGRELT--EEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 907 qnkdnefalvkhekeaviclqnEKDQKLLEMENIMHsqncEIKELKQS-REIVLEDLKKlhveNDEKLQLLRAELQSLEq 985
Cdd:PRK03918 490 ----------------------KKESELIKLKELAE----QLKELEEKlKKYNLEELEK----KAEEYEKLKEKLIKLK- 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 986 SHLKELEDTLQvrHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKEQQLQELK--------LKVS-----D 1052
Cdd:PRK03918 539 GEIKSLKKELE--KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneyleLKDAekeleR 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1053 LSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQvGLAELR--TLMT 1130
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELE-ELEKRReeIKKT 695
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1131 IEKDQCISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSalekqkdEKITqqEEKYEAIIQ 1210
Cdd:PRK03918 696 LEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIF-------EELT--EGKYSGVRV 766
|
410
....*....|....*....
gi 1622958758 1211 NLEKDKQKL-VISQEQDRE 1228
Cdd:PRK03918 767 KAEENKVKLfVVYQGKERP 785
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
843-1128 |
1.37e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 843 EIRNIIEKVKCSLEITLKEKHQKE----LQSLKNEYEGKLdaLIKETEENENKIKKLKGELVCLEEVLQNKD---NEFAL 915
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAEryqaLLKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEELEKLTeeiSELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 916 VKHEKEAVICLQNEKDQKLLEMENI-----MHSQNCEIKELKQS---REIVLEDLKKLHVENDEKLQLLRAELQSLE--- 984
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLrvkekIGELEAEIASLERSiaeKERELEDAEERLAKLEAEIDKLLAEIEELErei 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 985 ----------QSHLKELEDTLQVRhIQEFEKVMTDHRISLEELKKEnQQIINQIQESHAAVIQEKEQQLQELKLKVSDLS 1054
Cdd:TIGR02169 346 eeerkrrdklTEEYAELKEELEDL-RAELEEVDKEFAETRDELKDY-REKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622958758 1055 DMRCKLEV---ELALKEAETDEIKILLEESRAQQKETLKSL--LEQETENLRTEISKLNQKIQDNNENYQVGLAELRTL 1128
Cdd:TIGR02169 424 DLNAAIAGieaKINELEEEKEDKALEIKKQEWKLEQLAADLskYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
949-1234 |
1.37e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 949 KELKQSREIVLEDLKKLHVEN-DEKLQLLRAELQSLEQsHLKELEDTLQVR--HIQEFEKVMTDHRISLEELKKENQQII 1025
Cdd:COG1196 216 RELKEELKELEAELLLLKLRElEAELEELEAELEELEA-ELEELEAELAELeaELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1026 NQIQESHAAvIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKEtLKSLLEQETENLRTEIS 1105
Cdd:COG1196 295 AELARLEQD-IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE-AEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1106 KLNQKIQDNNENYQVGLAELRTLMTIEKDqcISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNS 1185
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQ--LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1622958758 1186 ELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKL 1234
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
856-1377 |
2.64e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.55 E-value: 2.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 856 EITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAViclqNEKDQKLL 935
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI----EELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 936 EMENIMHSQNCEIKELKQSREIVLEDLKKLH------------VENDEKLQLLRAELQSLEQSHLKELED-TLQVRHIQE 1002
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEekvkelkelkekAEEYIKLSEFYEEYLDELREIEKRLSRlEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1003 FEKVMTDHRISLEELKKENQQIINQIQEshaavIQEKEQQLQELKLKVSDLSDMRCKlevelaLKEAETDEIKILLEESR 1082
Cdd:PRK03918 329 RIKELEEKEERLEELKKKLKELEKRLEE-----LEERHELYEEAKAKKEELERLKKR------LTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1083 AQQKEtlkslLEQETENLRTEISKLNQKIQDNNENyqvglaelrtLMTIEKDQ-----CISELISRHEEE-SSILKAELN 1156
Cdd:PRK03918 398 KAKEE-----IEEEISKITARIGELKKEIKELKKA----------IEELKKAKgkcpvCGRELTEEHRKElLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1157 KVTSLHHQAFEIENTLKEQIIELQSKLN--SELSALEKQKDEkITQQEEKYEAIiqNLEKDKQKlvisqEQDREQLIQKL 1234
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKkeSELIKLKELAEQ-LKELEEKLKKY--NLEELEKK-----AEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1235 NCEKDEAIQTA-----LKEFILEREVVEKQLLEKVKHLENQIAKspaidsTREDSSSLVAELQEKLQEEKAKFLEQLE-- 1307
Cdd:PRK03918 535 IKLKGEIKSLKkelekLEELKKKLAELEKKLDELEEELAELLKE------LEELGFESVEELEERLKELEPFYNEYLElk 608
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622958758 1308 --EQEKRKNEEMQNVRTSLIAEQQTNFNTVLTR-EKMRKEniINDLsdKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:PRK03918 609 daEKELEREEKELKKLEEELDKAFEELAETEKRlEELRKE--LEEL--EKKYSEEEYEELREEYLELSRELAG 677
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
843-1321 |
3.33e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 3.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 843 EIRNIIEKVKcsLEITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKG------ELVCLEEVLQNKDNEFALV 916
Cdd:PRK03918 235 ELKEEIEELE--KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 917 KHEKEAVICLQNEKDQKLLEMEnimhSQNCEIKELKQSREIVLEDLKKLH--VENDEKLQLLRAELQSLEqSHLKELEDT 994
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEerHELYEEAKAKKEELERLK-KRLTGLTPE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 995 LQVRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQ------------------EKEQQLQELKLKVSDLSDM 1056
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelteeHRKELLEEYTAELKRIEKE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1057 RCKLEVELALKEAETDEIKILLEESRAQQKetLKSLLEQeTENLRTEISKLN-QKIQDNNENYQVGLAELRTLmtiekdq 1135
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIK--LKELAEQ-LKELEEKLKKYNlEELEKKAEEYEKLKEKLIKL------- 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1136 ciselisrhEEESSILKAELNKVTSLHHQAFEIENTLKEqiielqskLNSELSALEKQKDEKITQQEEKYEAIIQNLEKD 1215
Cdd:PRK03918 538 ---------KGEIKSLKKELEKLEELKKKLAELEKKLDE--------LEEELAELLKELEELGFESVEELEERLKELEPF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1216 KQKLV--ISQEQDREQLIQKLNCEKDEaiqtaLKEFILEREVVEKQLLEKVKHLEnQIAKSPAIDSTREdssslVAELQE 1293
Cdd:PRK03918 601 YNEYLelKDAEKELEREEKELKKLEEE-----LDKAFEELAETEKRLEELRKELE-ELEKKYSEEEYEE-----LREEYL 669
|
490 500
....*....|....*....|....*...
gi 1622958758 1294 KLQEEKAKFLEQLEEQEKRKNEEMQNVR 1321
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLE 697
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
830-1245 |
1.17e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 830 QCDFSNSLKCTAVEIRNIIEKVkcsleitlkekhqkelqSLKNEYEGKLDALIKETEENENKIKKLkgELVcLEEVLQNK 909
Cdd:TIGR02169 141 QGDVTDFISMSPVERRKIIDEI-----------------AGVAEFDRKKEKALEELEEVEENIERL--DLI-IDEKRQQL 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 910 DNefalvkhekeavicLQNEKDQKLlemenimhsQNCEIKELKQSREIVLEDLKKLhvENDEKLQLLRAELQSLEqshlK 989
Cdd:TIGR02169 201 ER--------------LRREREKAE---------RYQALLKEKREYEGYELLKEKE--ALERQKEAIERQLASLE----E 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 990 ELEDtLQVRhIQEFEKVMTDHRISLEEL----KKENQQIINQIQESHAAVIQEKEQ---QLQELKLKVSDLSDMRCKLEV 1062
Cdd:TIGR02169 252 ELEK-LTEE-ISELEKRLEEIEQLLEELnkkiKDLGEEEQLRVKEKIGELEAEIASlerSIAEKERELEDAEERLAKLEA 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1063 ELALKEAETDEIKILLEESRAQqketlKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRtlmtiEKDQCISELIS 1142
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKR-----RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK-----DYREKLEKLKR 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1143 RHEEessiLKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNsELSALEKQKDEKITQQEEKYEAIIQNLEK-DKQKLVI 1221
Cdd:TIGR02169 400 EINE----LKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEWKLEQLAADLSKyEQELYDL 474
|
410 420
....*....|....*....|....*
gi 1622958758 1222 SQEQDR-EQLIQKLNCEKDEAIQTA 1245
Cdd:TIGR02169 475 KEEYDRvEKELSKLQRELAEAEAQA 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1059-1373 |
1.58e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1059 KLEVELALKEAETDEIKILLEESRAQQKEtlkslLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMtiEKDQCIS 1138
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEE-----LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE--ERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1139 ELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQ---SKLNSELSALEKQKDE---KITQQEEKYEAIIQNL 1212
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeelKALREALDELRAELTLlneEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1213 EKDKQKLVISQEQDREQliqklncekdEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKS-PAIDSTREDSSSLVAEL 1291
Cdd:TIGR02168 834 AATERRLEDLEEQIEEL----------SEDIESLAAEIEELEELIEELESELEALLNERASLeEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1292 QEKlqEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESL 1371
Cdd:TIGR02168 904 REL--ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
..
gi 1622958758 1372 SE 1373
Cdd:TIGR02168 982 KE 983
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
866-1374 |
2.78e-10 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 65.15 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 866 ELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQN 945
Cdd:pfam05557 31 ELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 946 CEIKELKQSREIvledlkklhveNDEKLQLLRAELQSLEQSHlkeledTLQVRHIQEFEKVMTDHRISLEELKKENQQII 1025
Cdd:pfam05557 111 NELSELRRQIQR-----------AELELQSTNSELEELQERL------DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIK 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1026 -----NQIQESHAAVIQEKEQQLqelkLKVSDLSDMRCKLEVELAlKEAETDEIKILLEEsraqQKETLKSLLEQETE-- 1098
Cdd:pfam05557 174 elefeIQSQEQDSEIVKNSKSEL----ARIPELEKELERLREHNK-HLNENIENKLLLKE----EVEDLKRKLEREEKyr 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1099 ----NLRTEISKLNQKIQDNNENYQVGLAELRTLMTI--EKDQCISELISRHEEESSILKAELNKVTSLHHQAFEIENTL 1172
Cdd:pfam05557 245 eeaaTLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLsrRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1173 KeQIIELQSKLNSELSALEKQKDEKI--TQQEEKYEAIIQNLEKDKQKLVISQEQDR-----EQLIQKLNCeKDEAIQTA 1245
Cdd:pfam05557 325 K-KIEDLNKKLKRHKALVRRLQRRVLllTKERDGYRAILESYDKELTMSNYSPQLLErieeaEDMTQKMQA-HNEEMEAQ 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1246 LKefILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAkfleQLEEQEKRKNE-EMQNVRTSL 1324
Cdd:pfam05557 403 LS--VAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLEL----ERQRLREQKNElEMELERRCL 476
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1325 iaeqQTNFNTVLTREKMRKENIINDLSDKLKSTMQQ----QERDKDLIESLSED 1374
Cdd:pfam05557 477 ----QGDYDPKKTKVLHLSMNPAAEAYQQRKNQLEKlqaeIERLKRLLKKLEDD 526
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
833-1241 |
4.02e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 833 FSNSLKCTAVEIRNIIEKVKCSLEITLKEkhQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNE 912
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSE--LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 913 FALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSreivledlkklhvENDEKLQLLRAELQSLEQSHlkele 992
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR-------------LSHSRIPEIQAELSKLEEEV----- 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 993 dtlqvrhiQEFEKVMTDHRISLEELKKENQQIinqiqeshaaviqekEQQLQELKLKVSDLSDMRCKLEVELALKEAETD 1072
Cdd:TIGR02169 808 --------SRIEARLREIEQKLNRLTLEKEYL---------------EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1073 EIKILLEESRAQQKETLKSL--LEQETENLRTEISKLNQKIQDNNENYQvgLAELRTLMTIEKDQCISELISRHEEESSI 1150
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLgdLKKERDELEAQLRELERKIEELEAQIE--KKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1151 LKAELNKVTSLhhqafeientlkEQIIELQSKLNSELSALEKQKDEKItQQEEKYEAIIQNLEKDKQKLVISQEQDREqL 1230
Cdd:TIGR02169 943 DEEIPEEELSL------------EDVQAELQRVEEEIRALEPVNMLAI-QEYEEVLKRLDELKEKRAKLEEERKAILE-R 1008
|
410
....*....|.
gi 1622958758 1231 IQKLNCEKDEA 1241
Cdd:TIGR02169 1009 IEEYEKKKREV 1019
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
843-1373 |
4.98e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 64.36 E-value: 4.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 843 EIRNIIEKVKCSLEITLKEKHQKeLQSLKNEY-------EGKLDALIKETEENENKIKklkgELVCLEEVLQNKDNEFal 915
Cdd:pfam05483 201 ELRVQAENARLEMHFKLKEDHEK-IQHLEEEYkkeindkEKQVSLLLIQITEKENKMK----DLTFLLEESRDKANQL-- 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 916 vkhekEAVICLQNEKDQKLLEMEnimHSQNCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEQSHLKELEDTL 995
Cdd:pfam05483 274 -----EEKTKLQDENLKELIEKK---DHLTKELEDIKMSLQRSMSTQKAL----EEDLQIATKTICQLTEEKEAQMEELN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 996 QVRHIQEFekVMTDHRI---SLEELKKENQQIINQIQESHAAVIQEKEQQLQELKlkvsDLSDMRCKLEVELALKEAETD 1072
Cdd:pfam05483 342 KAKAAHSF--VVTEFEAttcSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE----EMTKFKNNKEVELEELKKILA 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1073 EIKILLEESRAQQKetlkslLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTlmtiekdqciSEliSRHEEESSILK 1152
Cdd:pfam05483 416 EDEKLLDEKKQFEK------IAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKT----------SE--EHYLKEVEDLK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1153 AELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSALEKQKDEKIT--QQEEKYEAIIQNLEKDKQKLVISQEQDREQL 1230
Cdd:pfam05483 478 TELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINckKQEERMLKQIENLEEKEMNLRDELESVREEF 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1231 IQ-----KLNCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIA-KSPAIDSTREDSSSL-----VAELQEKLQEEK 1299
Cdd:pfam05483 558 IQkgdevKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEnKNKNIEELHQENKALkkkgsAENKQLNAYEIK 637
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1300 AKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLtrEKMRKENIINDLSDKLkstmqQQERDKDLIESLSE 1373
Cdd:pfam05483 638 VNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLL--EEVEKAKAIADEAVKL-----QKEIDKRCQHKIAE 704
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
872-1478 |
7.47e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.22 E-value: 7.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 872 NEYEGKLDALIKETEENENKIKKlkgelvcLEEVLQNKDNEFALVKHEKEAVICLQNEKDqkllemenimhsqnceiKEL 951
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAEL-------IIDLEELKLQELKLKEQAKKALEYYQLKEK-----------------LEL 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 952 KQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQShlkeledtlqvrhIQEFEKVMTDHRISLEELKKENQQIINQIQES 1031
Cdd:pfam02463 222 EEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESS-------------KQEIEKEEEKLAQVLKENKEEEKEKKLQEEEL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1032 HAAVIQEKEQQLQELKLKVSDLSDMRcklEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKI 1111
Cdd:pfam02463 289 KLLAKEEEELKSELLKLERRKVDDEE---KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1112 QDNNENYQVGLAELRtlmtiEKDQCISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSALE 1191
Cdd:pfam02463 366 EKLEQLEEELLAKKK-----LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1192 KQkdeKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLncEKDEAIQTALKEFILEREVVEKQllekvKHLENQI 1271
Cdd:pfam02463 441 LK---QGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLV--KLQEQLELLLSRQKLEERSQKES-----KARSGLK 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1272 AKSPAIDSTREDSSSLVAELQEKLQEEKAKFLEQLEEqekrkNEEMQNVRTSLIAEQQTNFNTVLTREK--MRKENIIND 1349
Cdd:pfam02463 511 VLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIST-----AVIVEVSATADEVEERQKLVRALTELPlgARKLRLLIP 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1350 LSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLEEEVSKLRSSSFVPSPYVATAPELYGACAPELPGESDRSAVETA 1429
Cdd:pfam02463 586 KLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVK 665
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1622958758 1430 DEGRVDSAMETSMMSVQENIHMLS---EEKQRIMLLERTLQLKEEENKRLNQ 1478
Cdd:pfam02463 666 ASLSELTKELLEIQELQEKAESELakeEILRRQLEIKKKEQREKEELKKLKL 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1146-1377 |
7.92e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 7.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1146 EESSILKAELnkvTSLHHQAFEIENTLKEQIIELQSKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKL-VISQE 1224
Cdd:COG1196 220 EELKELEAEL---LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEyELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1225 QDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKFLE 1304
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1305 QLEEQEKRKNEEMQNVRTSL-IAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:COG1196 377 AEEELEELAEELLEALRAAAeLAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
867-1255 |
1.02e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.60 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 867 LQSLKNEYEGKLD---ALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHS 943
Cdd:pfam15921 435 LKAMKSECQGQMErqmAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEA 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 944 QNCEIKELKQSREIVLEDLKKLHVENDEkLQLLRAELQSLeQSHLKELEDTLQV--RHIQEFEKVMTDHRISLEELKKEN 1021
Cdd:pfam15921 515 TNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTECEAL-KLQMAEKDKVIEIlrQQIENMTQLVGQHGRTAGAMQVEK 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1022 QQIINQIQESHAAVIQ------EKEQQLQELKLKVSDLSDMRCKL-----EVELALKEAETDEIKILLE--------ESR 1082
Cdd:pfam15921 593 AQLEKEINDRRLELQEfkilkdKKDAKIRELEARVSDLELEKVKLvnagsERLRAVKDIKQERDQLLNEvktsrnelNSL 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1083 AQQKETLKSLLEQETENLRTEISKLNQKIQdnneNYQVGLAELR-TLMTIE-KDQCISELISRHEEESSILKAELNKVTS 1160
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLK----SAQSELEQTRnTLKSMEgSDGHAMKVAMGMQKQITAKRGQIDALQS 748
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1161 ---LHHQAFEIENTLKEQIIELQSKLNSELSALEKQKD------EKITQQEEKYEAIIQNLEK--DKQKLVISQEQDreq 1229
Cdd:pfam15921 749 kiqFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNkmagelEVLRSQERRLKEKVANMEValDKASLQFAECQD--- 825
|
410 420
....*....|....*....|....*.
gi 1622958758 1230 LIQKlncEKDEAIQTALKEFILEREV 1255
Cdd:pfam15921 826 IIQR---QEQESVRLKLQHTLDVKEL 848
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
949-1253 |
1.25e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 949 KELK-QSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHlKELEDTLQVRHIQefekvMTDHRISLEELKKEnQQIINQ 1027
Cdd:TIGR02168 216 KELKaELRELELALLVLRLEELREELEELQEELKEAEEEL-EELTAELQELEEK-----LEELRLEVSELEEE-IEELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1028 IQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKEtlkslLEQETENLRTEISKL 1107
Cdd:TIGR02168 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-----LKEELESLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1108 NQKIQDNNEnyqvGLAELRTLMTIEKdqciSELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSEL 1187
Cdd:TIGR02168 364 EAELEELES----RLEELEEQLETLR----SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622958758 1188 SALEKQ---KDEKITQQEEKYEAIIQNLEkdkqklviSQEQDREQLIQKLNCEKDEAIQTALKEFILER 1253
Cdd:TIGR02168 436 KELQAEleeLEEELEELQEELERLEEALE--------ELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
828-1346 |
1.37e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 63.53 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 828 KEQCDFSNSLKCTAVEIRNII-----EKVKCSLEITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCL 902
Cdd:TIGR01612 506 KDIIDFMELYKPDEVPSKNIIgfdidQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLF 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 903 EEVLQNKD-----NEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKEL-KQSREIVLEdlkklHVENDEKL-QL 975
Cdd:TIGR01612 586 DKYLEIDDeiiyiNKLKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELaKISPYQVPE-----HLKNKDKIyST 660
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 976 LRAELQSLEQSHLKELEDTLQvRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKEQQLQELKLKVSD-LS 1054
Cdd:TIGR01612 661 IKSELSKIYEDDIDALYNELS-SIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDiIV 739
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1055 DMRCKLEVELalkeaeTDEIKILLEESRAQQKETLKSLLEQETEN-----LRTEISKL-----------NQKIQDNNENY 1118
Cdd:TIGR01612 740 EIKKHIHGEI------NKDLNKILEDFKNKEKELSNKINDYAKEKdelnkYKSKISEIknhyndqinidNIKDEDAKQNY 813
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1119 QVGLAELRTLmTIEKDQcISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSalekqkDEKI 1198
Cdd:TIGR01612 814 DKSKEYIKTI-SIKEDE-IFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEIS------DDKL 885
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1199 TQQEEKY-------EAIIQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAI---QTALKEF-------ILEREVVEKQ-- 1259
Cdd:TIGR01612 886 NDYEKKFndsksliNEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFhnkQNILKEIlnknidtIKESNLIEKSyk 965
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1260 ------LLEKVKHLEnQIAKSPAIDSTREDSSSLVA---ELQEKLQEEKAKFL-EQLEEQEKRKNEEMQ-------NVRT 1322
Cdd:TIGR01612 966 dkfdntLIDKINELD-KAFKDASLNDYEAKNNELIKyfnDLKANLGKNKENMLyHQFDEKEKATNDIEQkiedankNIPN 1044
|
570 580
....*....|....*....|....
gi 1622958758 1323 SLIAEQQTNFNTVLTREKMRKENI 1346
Cdd:TIGR01612 1045 IEIAIHTSIYNIIDEIEKEIGKNI 1068
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
815-1374 |
1.38e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 63.53 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 815 IKEDLCH--FRTFVQKEQCDFSNSLKCTAVEIRNIIEKVkcsleitlkEKHQKELQSLKNEyegkldaliketeeNENKI 892
Cdd:TIGR01612 1089 IKEKLKHynFDDFGKEENIKYADEINKIKDDIKNLDQKI---------DHHIKALEEIKKK--------------SENYI 1145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 893 KKLKGELVCLEEVLQNK-DNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVL-------EDLKK 964
Cdd:TIGR01612 1146 DEIKAQINDLEDVADKAiSNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKginlsygKNLGK 1225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 965 LHVE--NDEK------LQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRISLEELKKenQQIINQIQESHAAVI 1036
Cdd:TIGR01612 1226 LFLEkiDEEKkksehmIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKD--HHIISKKHDENISDI 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1037 QEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESraqqkETLKSLLE-QETENLRTEISKLNQKIQDNN 1115
Cdd:TIGR01612 1304 REKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEI-----ANIYNILKlNKIKKIIDEVKEYTKEIEENN 1378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1116 ENYQVGLAELRTLM-TIEKDQCISELISRheEESSILKAELNKVtslhhqafeIENT--LKEQIIELQSKLNSEL-SALE 1191
Cdd:TIGR01612 1379 KNIKDELDKSEKLIkKIKDDINLEECKSK--IESTLDDKDIDEC---------IKKIkeLKNHILSEESNIDTYFkNADE 1447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1192 KQKD-----EKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAIQTalKEFILEREVVEKQLLEKVKH 1266
Cdd:TIGR01612 1448 NNENvlllfKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKN--AKAIEKNKELFEQYKKDVTE 1525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1267 LENQ---IAKSPAIDSTREDSSSLVAELQEKlqeeKAKFLEQLEEQEKRKNE-EMQNVRTSLIAEQQTNFNTVLTREKMR 1342
Cdd:TIGR01612 1526 LLNKysaLAIKNKFAKTKKDSEIIIKEIKDA----HKKFILEAEKSEQKIKEiKKEKFRIEDDAAKNDKSNKAAIDIQLS 1601
|
570 580 590
....*....|....*....|....*....|....*...
gi 1622958758 1343 KENI------INDLSDKLKSTMQQQERDKDLIESLSED 1374
Cdd:TIGR01612 1602 LENFenkflkISDIKKKINDCLKETESIEKKISSFSID 1639
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
855-1365 |
2.09e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.36 E-value: 2.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 855 LEITLKEKHQKELQSLKNEYEGKL---DALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKD 931
Cdd:PRK02224 192 LKAQIEEKEEKDLHERLNGLESELaelDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIED---LRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 932 QKLLEMENIMHsqncEIKELKQSREIVLEDLKKLhvendeklqLLRAELQSLEQSHLKELEDTLQVRhIQEFEKVMTDHR 1011
Cdd:PRK02224 269 ETEREREELAE----EVRDLRERLEELEEERDDL---------LAEAGLDDADAEAVEARREELEDR-DEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1012 ISLEELKKEnqqiinqiQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQ------- 1084
Cdd:PRK02224 335 VAAQAHNEE--------AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvd 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1085 --QKETLKSLLEQETENLRTEISKLNQKIQDNNENyqvgLAELRTLMTIEK---------DQCISELISRHEEESSILKA 1153
Cdd:PRK02224 407 lgNAEDFLEELREERDELREREAELEATLRTARER----VEEAEALLEAGKcpecgqpveGSPHVETIEEDRERVEELEA 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1154 ELNKvtslhhqafeientLKEQIIELQSKLNS--ELSALEKQKDEKitqqEEKYEAIIQNLEKDKQKLvisqEQDREQL- 1230
Cdd:PRK02224 483 ELED--------------LEEEVEEVEERLERaeDLVEAEDRIERL----EERREDLEELIAERRETI----EEKRERAe 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1231 -----IQKLNCEKDEAIQTALKefilEREVVEKQlLEKVKHLENQIAkspAIDSTRE------DSSSLVAELQEKLQE-- 1297
Cdd:PRK02224 541 elrerAAELEAEAEEKREAAAE----AEEEAEEA-REEVAELNSKLA---ELKERIEslerirTLLAAIADAEDEIERlr 612
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622958758 1298 EKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTmqQQERDK 1365
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDEL--REERDD 678
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
869-1370 |
2.61e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 62.30 E-value: 2.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 869 SLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFAlvkhEKEAVICLQNEKDQKLLEMENIMHSQncei 948
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENK----EEEKEKKLQEEELKLLAKEEEELKSE---- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 949 KELKQSREIVLEDLKKLHVENDEKLQ--LLRAELQSLEQSHLKELEDTLQVRH---IQEFEKVMTDHRISLEELKKENQQ 1023
Cdd:pfam02463 302 LLKLERRKVDDEEKLKESEKEKKKAEkeLKKEKEEIEELEKELKELEIKREAEeeeEEELEKLQEKLEQLEEELLAKKKL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1024 IINQIQESHAAVIQEKEQQLQELKlKVSDLSDMRCKLEVELAL----KEAETDEIKILLEESRAQQKETLKSLLEQETEN 1099
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEK-EAQLLLELARQLEDLLKEekkeELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1100 LRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIEL 1179
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1180 QS--KLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLN-----CEKDEAIQTALKEFILE 1252
Cdd:pfam02463 541 YKvaISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEidpilNLAQLDKATLEADEDDK 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1253 REVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQE-----KLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAE 1327
Cdd:pfam02463 621 RAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKsevkaSLSELTKELLEIQELQEKAESELAKEEILRRQLE 700
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1622958758 1328 QQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIES 1370
Cdd:pfam02463 701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQ 743
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
947-1377 |
3.61e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 61.32 E-value: 3.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 947 EIKELKQSREIVLEDLKKLHvENDEKLQLLRAELQSLEQsHLKELEDTLQVRHI----QEFEKVMTDHRISLEELKKENQ 1022
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELRE-ELEKLEKLLQLLPLyqelEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1023 QIINQIQEshaavIQEKEQQLQELKLKVSDLSDmRCKLEVELALKEAETDEIKilLEESRAQQKETLKSLlEQETENLRT 1102
Cdd:COG4717 157 ELRELEEE-----LEELEAELAELQEELEELLE-QLSLATEEELQDLAEELEE--LQQRLAELEEELEEA-QEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1103 EISKLNQKIQDNNENYQvgLAELRTLMTIEKDQCISELISRHEEESS---------------ILKAELNKVTSLHHQAFE 1167
Cdd:COG4717 228 ELEQLENELEAAALEER--LKEARLLLLIAAALLALLGLGGSLLSLIltiagvlflvlgllaLLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1168 IENTLKEQIIELQSKLNSELSALEKQKDEKITQQEEKYEAI------IQNLEKDKQKLVISQ-EQDREQLIQKLNCEKDE 1240
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIeelqelLREAEELEEELQLEElEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1241 AIqtalkEFILEREVVEKQLLEKVKHLENQIAkspaiDSTREDSSSLVAELQEKLQEEkakfLEQLEEQEKRKNEEMQNv 1320
Cdd:COG4717 386 EL-----RAALEQAEEYQELKEELEELEEQLE-----ELLGELEELLEALDEEELEEE----LEELEEELEELEEELEE- 450
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622958758 1321 rtsliaeqqtnfntvLTREKMRKENIINDL--SDKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:COG4717 451 ---------------LREELAELEAELEQLeeDGELAELLQELEELKAELRELAEEWAA 494
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
854-1242 |
4.55e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 4.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 854 SLEITLKEKhQKELQSLKNEYEGKLDA---LIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEK 930
Cdd:TIGR04523 360 EKQRELEEK-QNEIEKLKKENQSYKQEiknLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 931 DQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVEndeklqlLRAELQSLEQSHlKELEDtlQVRHIQEFEKVMTDH 1010
Cdd:TIGR04523 439 NSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRS-------INKIKQNLEQKQ-KELKS--KEKELKKLNEEKKEL 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1011 RISLEELKKENQQIINQIQESHAAvIQEKEQQLQELKLKVSDLSD--MRCKLEVELALKEAETDEIKILLEESRAQQKET 1088
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKIEKLESE-KKEKESKISDLEDELNKDDFelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1089 LKSL--LEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDqcISELISRHEEESSILKAELNKVTSLHHQAF 1166
Cdd:TIGR04523 588 QELIdqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN--IKSKKNKLKQEVKQIKETIKEIRNKWPEII 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1167 EIENTLKE---QIIELQSKLNSELSALEKQ------KDEKITQQEEKYEAIIQNLEKDKQklvisQEQDREQLIQKLNCE 1237
Cdd:TIGR04523 666 KKIKESKTkidDIIELMKDWLKELSLHYKKyitrmiRIKDLPKLEEKYKEIEKELKKLDE-----FSKELENIIKNFNKK 740
|
....*
gi 1622958758 1238 KDEAI 1242
Cdd:TIGR04523 741 FDDAF 745
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1016-1276 |
5.99e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 5.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1016 ELKKENQQIINQIQEShaavIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAEtdeikilLEESRAQQKEtlkslLEQ 1095
Cdd:COG4942 20 DAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQLAALERRIAALARR-------IRALEQELAA-----LEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1096 ETENLRTEISKLNQKIQDNNENYQvglAELRTLMTIEKDQCISELISRHEEESSILKAELNKvtslhhqafEIENTLKEQ 1175
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK---------YLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1176 IIELQSKLNsELSALEKQkdekITQQEEKYEAIIQNLEKDKQKLViSQEQDREQLIQKLNCEKdEAIQTALKEfiLEREv 1255
Cdd:COG4942 152 AEELRADLA-ELAALRAE----LEAERAELEALLAELEEERAALE-ALKAERQKLLARLEKEL-AELAAELAE--LQQE- 221
|
250 260
....*....|....*....|.
gi 1622958758 1256 vEKQLLEKVKHLENQIAKSPA 1276
Cdd:COG4942 222 -AEELEALIARLEAEAAAAAE 241
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
926-1297 |
6.85e-09 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 61.08 E-value: 6.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 926 LQNEKDQKLLEMENIMHSQNCE--------IKELKQSreivLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQV 997
Cdd:PRK11281 45 LDALNKQKLLEAEDKLVQQDLEqtlalldkIDRQKEE----TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLST 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 998 RHIQEFEKVMTDHRISLEELKKE----NQQIINQ--IQESHAAVIQEKEQQLQEL--KLKVSDLS------DMRCKLEVE 1063
Cdd:PRK11281 121 LSLRQLESRLAQTLDQLQNAQNDlaeyNSQLVSLqtQPERAQAALYANSQRLQQIrnLLKGGKVGgkalrpSQRVLLQAE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1064 LALKEAETDEIKILLEESraqqkETLKSLLEQETENLRTEISKLNQKIQDnnenYQVGLAELRTLMTIEK-DQCISELIS 1142
Cdd:PRK11281 201 QALLNAQNDLQRKSLEGN-----TQLQDLLQKQRDYLTARIQRLEHQLQL----LQEAINSKRLTLSEKTvQEAQSQDEA 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1143 RHEEESSILKAELNKVTSLHH---QAFEIENTLKEQIIELQSKLNSELSAlEKQKDEKIT-------------QQEEKYE 1206
Cdd:PRK11281 272 ARIQANPLVAQELEINLQLSQrllKATEKLNTLTQQNLRVKNWLDRLTQS-ERNIKEQISvlkgslllsrilyQQQQALP 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1207 A--IIQNLEKDKQKLVISQ---EQDREQL------IQKL----NCEKDEAIQTALKEFILEREvvekQLLEKV-KHLENQ 1270
Cdd:PRK11281 351 SadLIEGLADRIADLRLEQfeiNQQRDALfqpdayIDKLeaghKSEVTDEVRDALLQLLDERR----ELLDQLnKQLNNQ 426
|
410 420
....*....|....*....|....*..
gi 1622958758 1271 IAKSPAIDSTREDSSSLVAELQEKLQE 1297
Cdd:PRK11281 427 LNLAINLQLNQQQLLSVSDSLQSTLTQ 453
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
864-1374 |
7.14e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 7.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 864 QKELQSLKNE----------YEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQK 933
Cdd:TIGR02168 287 QKELYALANEisrleqqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 934 LLEMENIMHSQNCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEQSH------LKELEDTLQVRHIQEFEKVM 1007
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRerlqqeIEELLKKLEEAELKELQAEL 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1008 TDHRISLEELKKENQQIINQIqESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESR--AQQ 1085
Cdd:TIGR02168 443 EELEEELEELQEELERLEEAL-EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglSGI 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1086 KETLKSLLEQEtENLRTEISK-----LNQKIQDNNENYQVGLAELR--------------------------TLMTIEK- 1133
Cdd:TIGR02168 522 LGVLSELISVD-EGYEAAIEAalggrLQAVVVENLNAAKKAIAFLKqnelgrvtflpldsikgteiqgndreILKNIEGf 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1134 -------------------------------DQCISELISRHEEES-------------SILKAELNKVTSLHHQAFEIE 1169
Cdd:TIGR02168 601 lgvakdlvkfdpklrkalsyllggvlvvddlDNALELAKKLRPGYRivtldgdlvrpggVITGGSAKTNSSILERRREIE 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1170 N------TLKEQIIELQSKLN---SELSALEKQKDEKITQQEEKyEAIIQNLEKDKQKLVISQEQDREQL-IQKLNCEKD 1239
Cdd:TIGR02168 681 EleekieELEEKIAELEKALAelrKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLEERIaQLSKELTEL 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1240 EAIQTALKEFILEREVVEKQLLEKVKHLENQIAK-SPAIDSTREDSSSLVAELQ----------------EKLQEEKAKF 1302
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQlKEELKALREALDELRAELTllneeaanlrerleslERRIAATERR 839
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622958758 1303 LEQLEEQEKRKNEEMQNVrTSLIAEQQTNfntvltREKMRKEniINDLSDKLKSTMQQQERDKDLIESLSED 1374
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESL-AAEIEELEEL------IEELESE--LEALLNERASLEEALALLRSELEELSEE 902
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
844-1308 |
9.08e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.17 E-value: 9.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 844 IRNIIEKVKCSLEITLKEKHQKELQSLKNEyegkLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAv 923
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAEL- 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 924 iclqNEKDQKLLEMENimhsQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDtLQVRhIQEF 1003
Cdd:COG4717 142 ----AELPERLEELEE----RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE-LQQR-LAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1004 EKVMTDHRISLEELKKENQQIINQiqeshaAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILL----- 1078
Cdd:COG4717 212 EEELEEAQEELEELEEELEQLENE------LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFlvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1079 -----------------EESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELI 1141
Cdd:COG4717 286 lallflllarekaslgkEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1142 SRHEEESSILKAELNkVTSL-----HHQAFEIENTLKEQIIELQSKLNSELSA----LEKQKDEKITQQEEKYEAIIQNL 1212
Cdd:COG4717 366 EELEQEIAALLAEAG-VEDEeelraALEQAEEYQELKEELEELEEQLEELLGEleelLEALDEEELEEELEELEEELEEL 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1213 EKDKQKLvISQEQDREQLIQKLncEKDEAIQTALKEFilerevveKQLLEKVKHLENQIAkspAIDSTREdsssLVAELQ 1292
Cdd:COG4717 445 EEELEEL-REELAELEAELEQL--EEDGELAELLQEL--------EELKAELRELAEEWA---ALKLALE----LLEEAR 506
|
490
....*....|....*..
gi 1622958758 1293 EKLQEEKA-KFLEQLEE 1308
Cdd:COG4717 507 EEYREERLpPVLERASE 523
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
1012-1347 |
9.09e-09 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 60.34 E-value: 9.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1012 ISLEELKKENQQIINQ---IQESHAAVIQEKEQQLQelkLKVSDLSDMRCKLEVELALKEAETDEIKilleesraqqkET 1088
Cdd:pfam15818 35 VETQELKWQKETLQNQketLAKQHKEAMAVFKKQLQ---MKMCALEEEKGKYQLATEIKEKEIEGLK-----------ET 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1089 LKSLlEQETENLRTEISKLNQKIQDN---NENYQVGLAELRTLMT-----------------------IEKDQCISELIS 1142
Cdd:pfam15818 101 LKAL-QVSKYSLQKKVSEMEQKLQLHllaKEDHHKQLNEIEKYYAtitgqfglvkenhgkleqnvqeaIQLNKRLSALNK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1143 RHEEESSILKAELNKVTS--------LHHQAFE--IENTLKEQII-ELQSKLNSELsALEKQKDEKITQ-QEEKYEAIIQ 1210
Cdd:pfam15818 180 KQESEICSLKKELKKVTSdlikskvtCQYKMGEenINLTIKEQKFqELQERLNMEL-ELNKKINEEITHiQEEKQDIIIS 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1211 NleKDKQKLVISQEQDREQLIQKLNCEKdEAIQTALKEFILEREVVeKQLLEKVKHLENQIAK------------SPAID 1278
Cdd:pfam15818 259 F--QHMQQLLQQQTQANTEMEAELKALK-ENNQTLERDNELQREKV-KENEEKFLNLQNEHEKalgtwkkhveelNGEIN 334
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622958758 1279 STREDSSSLvAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVrtsliaeqqTNFNTVLTREKMrkENII 1347
Cdd:pfam15818 335 EIKNELSSL-KETHIKLQEHYNKLCNQKKFEEDKKFQNVPEV---------NNENSEMSTEKS--ENLI 391
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
886-1315 |
1.09e-08 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 60.34 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 886 EENENKIKKLKGELVCLEEVLQNKDNefALVKHEKEAVICLQNEKDQKL--LEMENIMHSQNCEIKElkqsREIvlEDLK 963
Cdd:pfam15818 27 EEQIGKIIVETQELKWQKETLQNQKE--TLAKQHKEAMAVFKKQLQMKMcaLEEEKGKYQLATEIKE----KEI--EGLK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 964 klhvendEKLQLLRAELQSLeQSHLKELEDTLQVRHIQEfekvmTDHRISLEELKKENQQIINQ---IQESHAAViqekE 1040
Cdd:pfam15818 99 -------ETLKALQVSKYSL-QKKVSEMEQKLQLHLLAK-----EDHHKQLNEIEKYYATITGQfglVKENHGKL----E 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1041 QQLQELKLKVSDLSDMRCKLEVELA-----LKEAETDEIKILLEESRAQQKETLK-SLLEQETENLRTEIS---KLNQKI 1111
Cdd:pfam15818 162 QNVQEAIQLNKRLSALNKKQESEICslkkeLKKVTSDLIKSKVTCQYKMGEENINlTIKEQKFQELQERLNmelELNKKI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1112 QDNNENYQVGLAELrtlmtIEKDQCISELISRHEEESSILKAELnKVTSLHHQAFEIENtlkeqiiELQSklnselsale 1191
Cdd:pfam15818 242 NEEITHIQEEKQDI-----IISFQHMQQLLQQQTQANTEMEAEL-KALKENNQTLERDN-------ELQR---------- 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1192 kqkdEKITQQEEKYeaiiQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAiqTALKEFILERE-----VVEKQLLEKVKH 1266
Cdd:pfam15818 299 ----EKVKENEEKF----LNLQNEHEKALGTWKKHVEELNGEINEIKNEL--SSLKETHIKLQehynkLCNQKKFEEDKK 368
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1267 LEN-QIAKSPAIDSTREDSSSLVAE----LQEKLQEEKAKFLEQLEEQEKRKNE 1315
Cdd:pfam15818 369 FQNvPEVNNENSEMSTEKSENLIIQkynsEQEIREENTKSFCSDTEYRETEKKK 422
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
860-1318 |
1.23e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 60.19 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 860 KEKHQKELQSLKnEYEGKLDALIKETEENENKIK---KLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLE 936
Cdd:pfam01576 18 KERQQKAESELK-ELEKKHQQLCEEKNALQEQLQaetELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 937 MENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLK-ELEDTLQVRHIQEFEKVMTDhrislE 1015
Cdd:pfam01576 97 EKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKlSKERKLLEERISEFTSNLAE-----E 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1016 ELKKENQQIINQIQESHAAVIQEK----EQQLQEL-KLK-------------VSDLSDMRCKLEVELALKEAETDEIKIL 1077
Cdd:pfam01576 172 EEKAKSLSKLKNKHEAMISDLEERlkkeEKGRQELeKAKrklegestdlqeqIAELQAQIAELRAQLAKKEEELQAALAR 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1078 LEESRAQQKETLKSL---------LEQETENLRTEISKLNQKIQDNNENYQVGLAELR-TLMTIEKDQcisELISRHEEE 1147
Cdd:pfam01576 252 LEEETAQKNNALKKIreleaqiseLQEDLESERAARNKAEKQRRDLGEELEALKTELEdTLDTTAAQQ---ELRSKREQE 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1148 SSILKAELNKVTSLHHQafeientlkeQIIELQSKLNSELsalekqkdEKITQQEEKYEAIIQNLEKDKQ---------- 1217
Cdd:pfam01576 329 VTELKKALEEETRSHEA----------QLQEMRQKHTQAL--------EELTEQLEQAKRNKANLEKAKQalesenaelq 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1218 ---KLVISQEQDREQLIQKLNCEKDEaiqtaLKEFILEREVVEKQLLEKVKHLENQI---------AKSPAIDSTREDSS 1285
Cdd:pfam01576 391 aelRTLQQAKQDSEHKRKKLEGQLQE-----LQARLSESERQRAELAEKLSKLQSELesvssllneAEGKNIKLSKDVSS 465
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1622958758 1286 --SLVAELQEKLQEE-----------------KAKFLEQLEEQ-EKRKNEEMQ 1318
Cdd:pfam01576 466 leSQLQDTQELLQEEtrqklnlstrlrqledeRNSLQEQLEEEeEAKRNVERQ 518
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
798-1318 |
1.82e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.60 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 798 LERCRVVAQDSHFSIQ---TIKEDLCHFRTFVQKEQCDFS------NSLKCTAVEIRNIIEKVKCSLEITLKEK----HQ 864
Cdd:TIGR00618 302 VTQIEQQAQRIHTELQskmRSRAKLLMKRAAHVKQQSSIEeqrrllQTLHSQEIHIRDAHEVATSIREISCQQHtltqHI 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 865 KELQSLKNEYEGKLDALIKETEENENKIKK----------LKGELVCL--EEVLQNKDNEFALVKHEKEAVICLQ----- 927
Cdd:TIGR00618 382 HTLQQQKTTLTQKLQSLCKELDILQREQATidtrtsafrdLQGQLAHAkkQQELQQRYAELCAAAITCTAQCEKLekihl 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 928 -------NEKDQKLLEMENIMHsqncEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSL-----EQSHLKELEDTL 995
Cdd:TIGR00618 462 qesaqslKEREQQLQTKEQIHL----QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdnpgpLTRRMQRGEQTY 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 996 QvRHIQEFEKV------MTDHRISLEE----LKKENQQIINQIQESHAAV--IQEKEQQLQELKLKVSDLSDM-RCKLEV 1062
Cdd:TIGR00618 538 A-QLETSEEDVyhqltsERKQRASLKEqmqeIQQSFSILTQCDNRSKEDIpnLQNITVRLQDLTEKLSEAEDMlACEQHA 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1063 ELALKEAETDEIKILLEESRAQQKETLKSL-LEQETENL---RTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCIS 1138
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRLHLQQCSQELALKLTaLHALQLTLtqeRVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1139 ELIsrhEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQ---SKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKD 1215
Cdd:TIGR00618 697 EML---AQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAareDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAA 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1216 KQKLviSQEQDREQLIQKLNcEKDEAIQTALKEfilerevVEKQLLEKVKHLENQI-AKSPAIDSTREDSSSLVAELQEK 1294
Cdd:TIGR00618 774 LQTG--AELSHLAAEIQFFN-RLREEDTHLLKT-------LEAEIGQEIPSDEDILnLQCETLVQEEEQFLSRLEEKSAT 843
|
570 580
....*....|....*....|....
gi 1622958758 1295 LQEEKAKfLEQLEEQEKRKNEEMQ 1318
Cdd:TIGR00618 844 LGEITHQ-LLKYEECSKQLAQLTQ 866
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
856-1476 |
1.86e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 59.68 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 856 EITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVcleevlQNKDNEFALVKHEKEAVICLQNEKDQKLL 935
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTV------REKERELVDCQRELEKLNKERRLLNQEKT 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 936 EMENimhsqncEIKELKQSREIVLEDLKKLHVENDEklQLLRAELQSLEQSHLKELE----DTLQVRHIQEFEKVMTDHR 1011
Cdd:TIGR00606 344 ELLV-------EQGRLQLQADRHQEHIRARDSLIQS--LATRLELDGFERGPFSERQiknfHTLVIERQEDEAKTAAQLC 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1012 ISLEELKKENQQIINQIQESHAA---------VIQEKEQqlQELKLKVSDLSD----MRCKLEVELALKEAETDEIKILL 1078
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGlgrtielkkEILEKKQ--EELKFVIKELQQlegsSDRILELDQELRKAERELSKAEK 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1079 EESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESSILKAELNKV 1158
Cdd:TIGR00606 493 NSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1159 TSLHHQAFEIENTLKeQIIELQSKLNSELSALEKQKD------EKITQQEEKYEAII------QNLEKDKQKLVISQEQD 1226
Cdd:TIGR00606 573 KQLEDWLHSKSKEIN-QTRDRLAKLNKELASLEQNKNhinnelESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKS 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1227 REQL-------------IQKLN---------CEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSpaidSTREDS 1284
Cdd:TIGR00606 652 SKQRamlagatavysqfITQLTdenqsccpvCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKK----EKRRDE 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1285 SSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSlIAEQQTNFNTVLTREKMRKE-----NIINDLSDKLKSTMQ 1359
Cdd:TIGR00606 728 MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND-IEEQETLLGTIMPEEESAKVcltdvTIMERFQMELKDVER 806
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1360 QQER------DKDLIESLSEDRARLLEEKKKLEEEVSKLRSSSFVPSPYVATAPELYGACApELPGESDRSAVETADEGR 1433
Cdd:TIGR00606 807 KIAQqaaklqGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN-ELKSEKLQIGTNLQRRQQ 885
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1622958758 1434 VDSAMETSMMSVQENIHMLSEEKQRIMLLERTLQLKEEENKRL 1476
Cdd:TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
841-1374 |
5.07e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.06 E-value: 5.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 841 AVEIRNIIEKVKCSLEITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKdNEFALVKHEK 920
Cdd:pfam02463 349 IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL-EDLLKEEKKE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 921 EAVICLQNEKDQKLLEMENIMHSQNCEIKELK----------QSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKE 990
Cdd:pfam02463 428 ELEILEEEEESIELKQGKLTEEKEELEKQELKllkdelelkkSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 991 LEDTL-----QVRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKEQQ---------------LQELKLKV 1050
Cdd:pfam02463 508 GLKVLlalikDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQklvraltelplgarkLRLLIPKL 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1051 SDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMT 1130
Cdd:pfam02463 588 KLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKAS 667
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1131 IEKDQCISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSALE----------KQKDEKITQ 1200
Cdd:pfam02463 668 LSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQeaqdkineelKLLKQKIDE 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1201 QEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAIQ---TALKEFILEREVVEKQLLEKVKHLENQIAKSPAI 1277
Cdd:pfam02463 748 EEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEekeEKLKAQEEELRALEEELKEEAELLEEEQLLIEQE 827
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1278 DSTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVL-TREKMRKENIINDLSDKLKS 1356
Cdd:pfam02463 828 EKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDeLESKEEKEKEEKKELEEESQ 907
|
570
....*....|....*...
gi 1622958758 1357 TMQQQERDKDLIESLSED 1374
Cdd:pfam02463 908 KLNLLEEKENEIEERIKE 925
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
996-1315 |
5.37e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 57.83 E-value: 5.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 996 QVRHIQEFEKVMTDhRISLEELKKENQQIINQIQESHAAVIqEKEQQLQELKLKVSDLSDMRCKL--EVELALKEAETDE 1073
Cdd:pfam17380 273 QLLHIVQHQKAVSE-RQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLEEAEKARQAEMDRQAAIyaEQERMAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1074 IKILLEESRAQQKETLKSLLEQETENLRtEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQciSELISRHEEESSILKA 1153
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAMEISRMR-ELERLQMERQQKNERVRQELEAARKVKILEEER--QRKIQQQKVEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1154 ELNKVTSLHHQAFEientlKEQIIELQSKLNSELSalEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQK 1233
Cdd:pfam17380 428 EQEEARQREVRRLE-----EERAREMERVRLEEQE--RQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1234 LNCEKDEAIQTALKEFILEREVVEKQLL----EKVKHLENQIAKSPAIDSTR--EDSSSLVAELQEKLQ--EEKAKFLEQ 1305
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEERQKAiyeeERRREAEEERRKQQEMEERRriQEQMRKATEERSRLEamEREREMMRQ 580
|
330
....*....|
gi 1622958758 1306 LEEQEKRKNE 1315
Cdd:pfam17380 581 IVESEKARAE 590
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
862-1316 |
1.13e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.98 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 862 KHQKELQSLKNEYEGKLDALIKETEENENKIKKLKgelvcleevlqnKDNEFALVKHEKEAVICLQNEKDQKllEMENIM 941
Cdd:TIGR00606 688 QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKE------------KRRDEMLGLAPGRQSIIDLKEKEIP--ELRNKL 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 942 HSQNCEIKELKQSREivledlkklhvENDEKLQLLRAELQSLE---------QSHLKELEDTLQVRHIQEFEKVMTDHRI 1012
Cdd:TIGR00606 754 QKVNRDIQRLKNDIE-----------EQETLLGTIMPEEESAKvcltdvtimERFQMELKDVERKIAQQAAKLQGSDLDR 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1013 SLEELKKENQQ------IINQIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELAlkeaetdeikilleesRAQQk 1086
Cdd:TIGR00606 823 TVQQVNQEKQEkqheldTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ----------------RRQQ- 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1087 etlkslLEQETENLRTEISKLNQKIQDNNENyqvglaELRTLMTIEKDQC-ISELISRHEEESSILKAELN----KVTSL 1161
Cdd:TIGR00606 886 ------FEEQLVELSTEVQSLIREIKDAKEQ------DSPLETFLEKDQQeKEELISSKETSNKKAQDKVNdikeKVKNI 953
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1162 HHQAFEIENTLKEQIIELQSKLNSELSALEKQKDEKITQQE---EKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCEK 1238
Cdd:TIGR00606 954 HGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEkinEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEV 1033
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622958758 1239 DEAIQTALKEFILEREVVEKQLLEKvkhLENQIakspaidSTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEE 1316
Cdd:TIGR00606 1034 EEELKQHLKEMGQMQVLQMKQEHQK---LEENI-------DLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEE 1101
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1013-1241 |
1.44e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1013 SLEELKKENQQIINQIQESHAAVIQEKEQ------QLQELKLKVSDLSDMRCKLEVELALKEAEtdeikilLEESRAQQK 1086
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEekallkQLAALERRIAALARRIRALEQELAALEAE-------LAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1087 EtlkslLEQETENLRTEISKLNQKIQDNNENyqvglaelRTLMTIEKDQCISELISRHEEESSILKAELNKVTSLHHQAF 1166
Cdd:COG4942 94 E-----LRAELEAQKEELAELLRALYRLGRQ--------PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1167 EIEnTLKEQIIELQSKLNSELSALEKQKDEKITQQEEKyEAIIQNLEKDKQKL------VISQEQDREQLIQKLNCEKDE 1240
Cdd:COG4942 161 ELA-ALRAELEAERAELEALLAELEEERAALEALKAER-QKLLARLEKELAELaaelaeLQQEAEELEALIARLEAEAAA 238
|
.
gi 1622958758 1241 A 1241
Cdd:COG4942 239 A 239
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1014-1377 |
1.81e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1014 LEELKKENQQIINQIQESHAAV--IQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKilLEESRAQQKETLKS 1091
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQeeLEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA--LEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1092 LLEQETE--NLRTEISKLNQKIqdnnENYQVGLAELRTLMTIEKDQCISELISRHEEessiLKAELNKVTSLHHQAFEIE 1169
Cdd:COG4717 151 LEERLEElrELEEELEELEAEL----AELQEELEELLEQLSLATEEELQDLAEELEE----LQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1170 NTLKEQIIELQSKLNSElsalekQKDEKITQQEEKYEAI--------------------------------IQNLEKDKQ 1217
Cdd:COG4717 223 EELEEELEQLENELEAA------ALEERLKEARLLLLIAaallallglggsllsliltiagvlflvlgllaLLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1218 KLVISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDS--SSLVAELQEKL 1295
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqlEELEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1296 QEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIiNDLSDKLKSTMQQQERDKDLIESLSEDR 1375
Cdd:COG4717 377 AEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREEL 455
|
..
gi 1622958758 1376 AR 1377
Cdd:COG4717 456 AE 457
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
841-1374 |
2.42e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 841 AVEIRNIIEKVKCSLEITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELvclEEvlQNKDNEFALVKHEK 920
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA---EE--AKKAAEAAKAEAEA 1354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 921 EAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKL-QLLRAELQSLEQSHLKELEDtlQVRH 999
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAdELKKAAAAKKKADEAKKKAE--EKKK 1432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1000 IQEFEKVMTDHRISlEELKKENQQiinQIQESHAAVIQEKEQQLQELKLKVSDlsdmrcKLEVELALKEAETDEIKILLE 1079
Cdd:PTZ00121 1433 ADEAKKKAEEAKKA-DEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKAEE------AKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1080 ESRAQQKETLKSLLEQETENLRTEISKLNQKiqdnnenyqvglaelrtlmtiekdqciselisRHEEESSilKAELNKVT 1159
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEA--------------------------------KKADEAK--KAEEKKKA 1548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1160 SLHHQAFEIENTLKEQIIElQSKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCEKD 1239
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1240 EAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKFLEQL--EEQEKRKNEEM 1317
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALkkEAEEAKKAEEL 1707
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622958758 1318 QNVRtsliAEQqtnfntVLTREKMRKENIINDLsdKLKSTMQQQERDKDLIESLSED 1374
Cdd:PTZ00121 1708 KKKE----AEE------KKKAEELKKAEEENKI--KAEEAKKEAEEDKKKAEEAKKD 1752
|
|
| EzrA |
COG4477 |
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ... |
928-1306 |
3.10e-07 |
|
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443574 [Multi-domain] Cd Length: 567 Bit Score: 55.23 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 928 NEKDQKLLEMENIMHSQNCEIKELKQSreivLEDLKKLHVENDEKLQLLRAELqsLEQSH-----LKELEDTLQV--RHI 1000
Cdd:COG4477 107 DEIEQLLDEIEEEIEEILEELEELLES----EEKNREEIEELKEKYRELRKTL--LAHRHsfgpaAEELEKQLEElePEF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1001 QEFEKVMT--------DHRISLEELKKENQQIINQIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEvELALKEAetd 1072
Cdd:COG4477 181 EEFEELTEsgdylearEILEQLEEELNALEELMEEIPPLLKELQTELPDQLEELKSGYREMKEQGYVLE-HLNIEKE--- 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1073 eikilLEESRAQQKETLKSLLEQETENLRTEISKLNQKIqdnNENYQVglaelrtlmtIEKdqcisELISRH--EEESSI 1150
Cdd:COG4477 257 -----IEQLEEQLKEALELLEELDLDEAEEELEEIEEEI---DELYDL----------LEK-----EVEAKKyvDKNQEE 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1151 LKAELNKVTSLHHQAF-EIEN-----TLKEQIIELQSKLNSELSALEKQKD---EKITQQEEKYEAIIQNLEKDKQKL-V 1220
Cdd:COG4477 314 LEEYLEHLKEQNRELKeEIDRvqqsyRLNENELEKVRNLEKQIEELEKRYDeidERIEEEKVAYSELQEELEEIEEQLeE 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1221 ISQEQdrEQLIQKL-NCEKDE-AIQTALKEFILE-REV---VEKQLL---------------EKVKHLENQIAKSP---- 1275
Cdd:COG4477 394 IEEEQ--EEFSEKLkSLRKDElEAREKLDELKKKlREIkrrLEKSNLpglpeeylemfeeasDEIEELSEELNEVPlnmd 471
|
410 420 430
....*....|....*....|....*....|...
gi 1622958758 1276 AIDSTREDSSSLVAELQEKLQE--EKAKFLEQL 1306
Cdd:COG4477 472 EVNRLLEEAEEDIETLEEKTEElvENATLTERL 504
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
834-1269 |
4.66e-07 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 54.58 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 834 SNSLKCTAVEIRNIIEKVKCSLEITLKEK-HQKELQSLKNEYEGKLDALIKETEENENKIKKLKG-ELVCLEEVLQNKDN 911
Cdd:COG5185 139 KVEKLDEIADIEASYGEVETGIIKDIFGKlTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTvNSIKESETGNLGSE 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 912 EFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKE-LKQSREIVLEDLKklhvENDEKLQLLRAELQSLEqshlKE 990
Cdd:COG5185 219 STLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKlVEQNTDLRLEKLG----ENAESSKRLNENANNLI----KQ 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 991 LEDTLQvrHIQEFEKvMTDHRISLEELKKENQQiiNQIQESHAAVIQEKEQQLQELKlkvSDLSDMRCKLEVELALKEAE 1070
Cdd:COG5185 291 FENTKE--KIAEYTK-SIDIKKATESLEEQLAA--AEAEQELEESKRETETGIQNLT---AEIEQGQESLTENLEAIKEE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1071 TDEIKILLEESRAQQKetlkslLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTiEKDQCISELISRHEEESSI 1150
Cdd:COG5185 363 IENIVGEVELSKSSEE------LDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLK-AADRQIEELQRQIEQATSS 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1151 LKAELNKV----TSLHHQAFEIENTLKEQIIELQSKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQD 1226
Cdd:COG5185 436 NEEVSKLLneliSELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGV 515
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1622958758 1227 REQLIQKLNCEKDE------AIQTALKEFILEREVVEKQLLEKVKHLEN 1269
Cdd:COG5185 516 RSKLDQVAESLKDFmrargyAHILALENLIPASELIQASNAKTDGQAAN 564
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
863-1368 |
5.61e-07 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 54.37 E-value: 5.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 863 HQKELQSLKNEYEGKLDALIKETEENENKIKKLK----GELVCLEEVLQNKD---NEFALVKHEKEAVICL-QNEKDQKL 934
Cdd:pfam07111 149 HQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLEtkraGEAKQLAEAQKEAEllrKQLSKTQEELEAQVTLvESLRKYVG 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 935 LEMENIMHSQNCEIKelkqsREIVLEDLKKLHVENDE---KLQLLRAELQSLeqSHLKELEDTLQVRHIQEFEkvmtdhr 1011
Cdd:pfam07111 229 EQVPPEVHSQTWELE-----RQELLDTMQHLQEDRADlqaTVELLQVRVQSL--THMLALQEEELTRKIQPSD------- 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1012 iSLE-ELKKENQQIINQIQES-HAAVIQEKEQQLQ-------------ELKLKVSDLSDMRCKLEVELALKEAETD---- 1072
Cdd:pfam07111 295 -SLEpEFPKKCRSLLNRWREKvFALMVQLKAQDLEhrdsvkqlrgqvaELQEQVTSQSQEQAILQRALQDKAAEVEverm 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1073 EIKIL-LEESRAQQ-KETLKSLLEQETENLRTEISKLNQ---KIQDNNENYQVGLAELRTL-----MTIEKDQCISELIS 1142
Cdd:pfam07111 374 SAKGLqMELSRAQEaRRRQQQQTASAEEQLKFVVNAMSStqiWLETTMTRVEQAVARIPSLsnrlsYAVRKVHTIKGLMA 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1143 RheeesSILKAELNKVTS-LHHQAFEIENTLK---EQIIELQSKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQK 1218
Cdd:pfam07111 454 R-----KVALAQLRQESCpPPPPAPPVDADLSlelEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQ 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1219 LVISQEQDREQLI---QKLNCEKDEAIQTALKEFILEREVVEKQLLEKvkhlenqiakspaidstredssslvAELQEKL 1295
Cdd:pfam07111 529 LEQELQRAQESLAsvgQQLEVARQGQQESTEEAASLRQELTQQQEIYG-------------------------QALQEKV 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1296 QEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTvlTREKMR-------KENIINDLSDKLKSTMQQQERDKDLI 1368
Cdd:pfam07111 584 AEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRA--TQEKERnqelrrlQDEARKEEGQRLARRVQELERDKNLM 661
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1080-1330 |
5.84e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.68 E-value: 5.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1080 ESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLmtiekdqciselisrhEEESSILKAELNKVT 1159
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAL----------------QAEIDKLQAEIAEAE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1160 SLHHQAFEIentLKEQIIELQ--SKLNSELSALEKQKD--EKITQQEekyeaIIQNLEKDKQKLVISQEQDREQLiqkln 1235
Cdd:COG3883 79 AEIEERREE---LGERARALYrsGGSVSYLDVLLGSESfsDFLDRLS-----ALSKIADADADLLEELKADKAEL----- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1236 cekdEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKspaidstREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNE 1315
Cdd:COG3883 146 ----EAKKAELEAKLAELEALKAELEAAKAELEAQQAE-------QEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
250
....*....|....*
gi 1622958758 1316 EMQNVRTSLIAEQQT 1330
Cdd:COG3883 215 AAAAAAAAAAAAAAA 229
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
835-1374 |
7.04e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.14 E-value: 7.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 835 NSLKCTAVEIRNIIEKVKCslEITLKEKHQKELQSLKNEyegkLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFA 914
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRA--EISNIDYLEEKLKSSNLE----LENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 915 LVKHEKEAVICLQNEKDQKLLEMENI------MHSQNCEIKELKQ------------SREIVLE--DLKKLHVENDEKLQ 974
Cdd:PRK01156 236 NLKSALNELSSLEDMKNRYESEIKTAesdlsmELEKNNYYKELEErhmkiindpvykNRNYINDyfKYKNDIENKKQILS 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 975 LLRAELQSLEQSHlKELEDtLQVRHIQ--EFEKVMTDHRISLEELKKENQQIINQIQEshaavIQEKEQQLQELKLKVSD 1052
Cdd:PRK01156 316 NIDAEINKYHAII-KKLSV-LQKDYNDyiKKKSRYDDLNNQILELEGYEMDYNSYLKS-----IESLKKKIEEYSKNIER 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1053 LSDMRCKLeveLALKEAETDEIKILLEESRAQQKEtlkslleqetenLRTEISKLNQKIQDNNENyqvgLAELRTLMTIE 1132
Cdd:PRK01156 389 MSAFISEI---LKIQEIDPDAIKKELNEINVKLQD------------ISSKVSSLNQRIRALREN----LDELSRNMEML 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1133 KDQCISELISRH---EEESSILKAELNKVTSLHHQAFEIENTLKEqIIELQSKLNSELSALEKQKDEKITQQEEKYEAII 1209
Cdd:PRK01156 450 NGQSVCPVCGTTlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKD-IDEKIVDLKKRKEYLESEEINKSINEYNKIESAR 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1210 QNLEKDKQKL--VISQEQDREQLIQKLNCEKDEAIQTALKEFI--------LEREVVEKQLLEKVKHLENQIAKSPAIDS 1279
Cdd:PRK01156 529 ADLEDIKIKIneLKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLnalavislIDIETNRSRSNEIKKQLNDLESRLQEIEI 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1280 TREDSSSLVAELQEKLQEEKAKFLEQLEEQE--KRKNEEMQNV------RTSLIAEQQTNFNTVlTREKMRKENIINDLS 1351
Cdd:PRK01156 609 GFPDDKSYIDKSIREIENEANNLNNKYNEIQenKILIEKLRGKidnykkQIAEIDSIIPDLKEI-TSRINDIEDNLKKSR 687
|
570 580
....*....|....*....|...
gi 1622958758 1352 DKLKSTMQQQERDKDLIESLSED 1374
Cdd:PRK01156 688 KALDDAKANRARLESTIEILRTR 710
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
947-1375 |
1.49e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 947 EIKELKQSREIV---LEDLKKLHVENDEKLQllraELQSLEQShLKELEDTLQ--VRHIQEFEKVMTDHRISLEELKKEN 1021
Cdd:PRK02224 221 EIERYEEQREQAretRDEADEVLEEHEERRE----ELETLEAE-IEDLRETIAetEREREELAEEVRDLRERLEELEEER 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1022 QQIINQIqESHAAVIQEKEQQLQELKLKVSDLSD--MRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETEN 1099
Cdd:PRK02224 296 DDLLAEA-GLDDADAEAVEARREELEDRDEELRDrlEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1100 LRTEISKLNQKIQDNNEnyqvglaELRTLmtiekdqciselisrhEEESSILKAELNKVTSLHHQAFEIENTLKEQIIEL 1179
Cdd:PRK02224 375 AREAVEDRREEIEELEE-------EIEEL----------------RERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1180 QSKLNSELSALEKQKD----EKITQ--QEEKYEAIIQNLEKDKQKlVISQEQDREQLIQKLNcEKDEAIQTALKEFILER 1253
Cdd:PRK02224 432 EATLRTARERVEEAEAlleaGKCPEcgQPVEGSPHVETIEEDRER-VEELEAELEDLEEEVE-EVEERLERAEDLVEAED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1254 EVveKQLLEKVKHLENQIA--------KSPAIDSTREDSSSLVAELQEK------LQEEKAKFLEQLEEQEKRKN----- 1314
Cdd:PRK02224 510 RI--ERLEERREDLEELIAerretieeKRERAEELRERAAELEAEAEEKreaaaeAEEEAEEAREEVAELNSKLAelker 587
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622958758 1315 -EEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLS-DKLKStmqQQERDKDLIESLSEDR 1375
Cdd:PRK02224 588 iESLERIRTLLAAIADAEDEIERLREKREALAELNDERrERLAE---KRERKRELEAEFDEAR 647
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
971-1197 |
1.51e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 971 EKLQLLRAELQSLEQShLKELEDTLQvrhiqefeKVMTDHRISLEELKKENQQIINQIQEshaavIQEKEQQLQELKLKV 1050
Cdd:COG4942 20 DAAAEAEAELEQLQQE-IAELEKELA--------ALKKEEKALLKQLAALERRIAALARR-----IRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1051 SDLSDMRCKLEVELALKEAE-------------TDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDnnen 1117
Cdd:COG4942 86 AELEKEIAELRAELEAQKEElaellralyrlgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE---- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1118 yqvgLAELRTLMTIEKDQcISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSK---LNSELSALEKQK 1194
Cdd:COG4942 162 ----LAALRAELEAERAE-LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEaeeLEALIARLEAEA 236
|
...
gi 1622958758 1195 DEK 1197
Cdd:COG4942 237 AAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
841-1087 |
1.54e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 841 AVEIRNIIEKVKCSLE-----ITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFAL 915
Cdd:TIGR02169 289 QLRVKEKIGELEAEIAslersIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 916 VKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHvendEKLQLLRAELQSLEQSHLkeledtl 995
Cdd:TIGR02169 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS----EELADLNAAIAGIEAKIN------- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 996 qvrhiqEFEKVMTDHRislEELKKENQQIinqiqESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIK 1075
Cdd:TIGR02169 438 ------ELEEEKEDKA---LEIKKQEWKL-----EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
250
....*....|..
gi 1622958758 1076 ILLEESRAQQKE 1087
Cdd:TIGR02169 504 ERVRGGRAVEEV 515
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
927-1113 |
1.74e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 927 QNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEQShLKELEDTlqvrhIQEFEKV 1006
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQE-LAALEAE-----LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1007 MTDHRISLEELKKENQQIINQIQES------------------------HAAVIQEKEQQLQELKLKVSDLSDMRCKLEV 1062
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLgrqpplalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1063 ELALKEAETDEIKIL---LEESRAQQKETLKSlLEQETENLRTEISKLNQKIQD 1113
Cdd:COG4942 172 ERAELEALLAELEEEraaLEALKAERQKLLAR-LEKELAELAAELAELQQEAEE 224
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
845-1222 |
1.77e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.13 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 845 RNIIEKVKCSLEITLKEKHQKELQSLKNEYEGKLDAliKETEENENKIKKLKGELVCLEevlQNKDNEFALVKHEKEAV- 923
Cdd:TIGR01612 1379 KNIKDELDKSEKLIKKIKDDINLEECKSKIESTLDD--KDIDECIKKIKELKNHILSEE---SNIDTYFKNADENNENVl 1453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 924 -----ICLQNEKDQKLLEME--NIMHSQNCEIKELKQSREivleDLKKLHVENDEKLQLLRAELQSLEQsHLKELEDTLQ 996
Cdd:TIGR01612 1454 llfknIEMADNKSQHILKIKkdNATNDHDFNINELKEHID----KSKGCKDEADKNAKAIEKNKELFEQ-YKKDVTELLN 1528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 997 VRHIQEFEKvmtdhriSLEELKKENQQIINQIQESHAAVIQE---KEQQLQELKLKVSDLSDMRCK--------LEVELA 1065
Cdd:TIGR01612 1529 KYSALAIKN-------KFAKTKKDSEIIIKEIKDAHKKFILEaekSEQKIKEIKKEKFRIEDDAAKndksnkaaIDIQLS 1601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1066 LKEAETDEIKIllEESRAQQKETLKslleqETENLRTEISKLNQKIQDNN-ENYQVGLAELRTLMTIEKDQciseliSRH 1144
Cdd:TIGR01612 1602 LENFENKFLKI--SDIKKKINDCLK-----ETESIEKKISSFSIDSQDTElKENGDNLNSLQEFLESLKDQ------KKN 1668
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622958758 1145 EEESsilKAELNKVTSlhhQAFEIENTLKeqiielQSKLNSELSALEKQKDEKITQQEEkYEAIIQNLEKDKQKLVIS 1222
Cdd:TIGR01612 1669 IEDK---KKELDELDS---EIEKIEIDVD------QHKKNYEIGIIEKIKEIAIANKEE-IESIKELIEPTIENLISS 1733
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1001-1367 |
2.16e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1001 QEFEKVMTDHRISLEELKKEnqqiINQIQESHaaviqekEQQLQELKLKVSDLSDMRCKLEVElalKEAETDeikilLEE 1080
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRR----LNESNELH-------EKQKFYLRQSVIDLQTKLQEMQME---RDAMAD-----IRR 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1081 SRAQQKETLKSLLEQETENLrtEISKLNQKIQDNNENYQVglAELRTLMTIEKD--QCISELISRHEEESSILKAELNKV 1158
Cdd:pfam15921 135 RESQSQEDLRNQLQNTVHEL--EAAKCLKEDMLEDSNTQI--EQLRKMMLSHEGvlQEIRSILVDFEEASGKKIYEHDSM 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1159 TSLHHQafeienTLKEQIIELQSKLNSELSALEKqkdeKITQQEEKYEAIiQNLEKDKQKLVISQEQDR-EQLIQKLN-- 1235
Cdd:pfam15921 211 STMHFR------SLGSAISKILRELDTEISYLKG----RIFPVEDQLEAL-KSESQNKIELLLQQHQDRiEQLISEHEve 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1236 ----CEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAkspaidstreDSSSLVAELQEKLQEEKAKFLEQLEEQEK 1311
Cdd:pfam15921 280 itglTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS----------DLESTVSQLRSELREAKRMYEDKIEELEK 349
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1312 R---KNEEMQNVRTS--LIAEQQTNFNTVLtrekmrkENIINDLSDKLKSTMQQQERDKDL 1367
Cdd:pfam15921 350 QlvlANSELTEARTErdQFSQESGNLDDQL-------QKLLADLHKREKELSLEKEQNKRL 403
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
861-1071 |
2.84e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 861 EKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKDQKLLEMENI 940
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---LRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 941 -----MHSQNCEIKELKQSREIV-----LEDLKKLHVENDEKLQLLRAELQSLEQShLKELEDtlQVRHIQEFEKVMTDH 1010
Cdd:COG4942 110 lralyRLGRQPPLALLLSPEDFLdavrrLQYLKYLAPARREQAEELRADLAELAAL-RAELEA--ERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1011 RISLEELKKENQQIINQIQEShaavIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAET 1071
Cdd:COG4942 187 RAALEALKAERQKLLARLEKE----LAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
871-1350 |
4.56e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 51.50 E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 871 KNEYEGKLDALIKETEENENKIKKLKGELVcleevLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENImhsQNCEIKE 950
Cdd:COG5185 109 LPNYEWSADILISLLYLYKSEIVALKDELI-----KVEKLDEIADIEASYGEVETGIIKDIFGKLTQELN---QNLKKLE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 951 LKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQ-SHLKELEDTLQVRHIQEFEKVMTDHRISLEELKKEN---QQIIN 1026
Cdd:COG5185 181 IFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLgSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSdklEKLVE 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1027 QIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISK 1106
Cdd:COG5185 261 QNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQN 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1107 LNQKIQDNNENYQVGLAELRTlmtiEKDQCISEL-ISRHEEESSILKAELNKV-TSLHhqafEIENTLKEQIIELQSKLN 1184
Cdd:COG5185 341 LTAEIEQGQESLTENLEAIKE----EIENIVGEVeLSKSSEELDSFKDTIESTkESLD----EIPQNQRGYAQEILATLE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1185 SELSALEKQKDEK---ITQQEEKYEA---IIQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEK 1258
Cdd:COG5185 413 DTLKAADRQIEELqrqIEQATSSNEEvskLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIES 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1259 QLLEKVKHLENQIAK-----SPAIDSTREDSSSLVAELQE------KLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAE 1327
Cdd:COG5185 493 RVSTLKATLEKLRAKlerqlEGVRSKLDQVAESLKDFMRArgyahiLALENLIPASELIQASNAKTDGQAANLRTAVIDE 572
|
490 500
....*....|....*....|...
gi 1622958758 1328 QqtNFNTVLTREKMRKENIINDL 1350
Cdd:COG5185 573 L--TQYLSTIESQQAREDPIPDQ 593
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
854-1375 |
6.14e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 50.98 E-value: 6.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 854 SLEITLKEKhQKELQSLKNE----YEG-----KLDALIKETEENENKIKKLKGELVCLEEVLQnkdnefaLVKHEKEaVI 924
Cdd:pfam10174 196 HLEVLLDQK-EKENIHLREElhrrNQLqpdpaKTKALQTVIEMKDTKISSLERNIRDLEDEVQ-------MLKTNGL-LH 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 925 CLQNEKDQKLLEMENiMHSQ--NCEIKELKQ-----SREIV-----LEDLKKLHVENDEKLQLLRAELQSLEQ--SHLKE 990
Cdd:pfam10174 267 TEDREEEIKQMEVYK-SHSKfmKNKIDQLKQelskkESELLalqtkLETLTNQNSDCKQHIEVLKESLTAKEQraAILQT 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 991 LEDTLQVRhIQEFEKVMTDHRISLEELKKENQQIINQI---------QESHAAVIQEKEQQLQE-LKLKVSDLSDMRCKL 1060
Cdd:pfam10174 346 EVDALRLR-LEEKESFLNKKTKQLQDLTEEKSTLAGEIrdlkdmldvKERKINVLQKKIENLQEqLRDKDKQLAGLKERV 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1061 eVELALKEAETDEIKILLEESRAQQketlksllEQETENLRTEISKLNQKIQDNNENYQVGLAELrtlmtieKDQCISEL 1140
Cdd:pfam10174 425 -KSLQTDSSNTDTALTTLEEALSEK--------ERIIERLKEQREREDRERLEELESLKKENKDL-------KEKVSALQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1141 ISRHEEESSILKAElNKVTSLHHQAFEIENTLKEQIIELQSKLNsELSALEKQ--KDEKITQQEEKYEAI---IQNLEKD 1215
Cdd:pfam10174 489 PELTEKESSLIDLK-EHASSLASSGLKKDSKLKSLEIAVEQKKE-ECSKLENQlkKAHNAEEAVRTNPEIndrIRLLEQE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1216 KQKLVisQEQDREQliqklncEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIakspaidstrEDSSSLVAELQEKL 1295
Cdd:pfam10174 567 VARYK--EESGKAQ-------AEVERLLGILREVENEKNDKDKKIAELESLTLRQM----------KEQNKKVANIKHGQ 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1296 QEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEqqtnfnTVLTREKMRKEniINDLSDKLKSTMQQ-QERDKDLiESLSED 1374
Cdd:pfam10174 628 QEMKKKGAQLLEEARRREDNLADNSQQLQLEE------LMGALEKTRQE--LDATKARLSSTQQSlAEKDGHL-TNLRAE 698
|
.
gi 1622958758 1375 R 1375
Cdd:pfam10174 699 R 699
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
888-1199 |
7.02e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 888 NENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAvicLQNEKD--QKLLEMenimhsqnceikelkQSREIvleDLKKL 965
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDA---LQERREalQRLAEY---------------SWDEI---DVASA 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 966 HvendEKLQLLRAELQSLEQSH--LKELEDTLQvrhiqefekvmtDHRISLEELKKENQQIINQIQEsHAAVIQEKEQQL 1043
Cdd:COG4913 667 E----REIAELEAELERLDASSddLAALEEQLE------------ELEAELEELEEELDELKGEIGR-LEKELEQAEEEL 729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1044 QELKLKVSDLSDMRCKLEVELA---LKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQV 1120
Cdd:COG4913 730 DELQDRLEAAEDLARLELRALLeerFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDA 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1121 GLAE----LRTLMTIEKDqcisELIsRHEEE--SSILKAELNKVTSLHHQAFEIENTLKEQIIElqskLNSELSALEKQK 1194
Cdd:COG4913 810 DLESlpeyLALLDRLEED----GLP-EYEERfkELLNENSIEFVADLLSKLRRAIREIKERIDP----LNDSLKRIPFGP 880
|
....*
gi 1622958758 1195 DEKIT 1199
Cdd:COG4913 881 GRYLR 885
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
794-1189 |
7.77e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 50.28 E-value: 7.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 794 LNVQLERCRVVAQDSHFSIQTIKEDLCHFRTFVQKEQCDFSNSLKCTAVEIRNIIEKVKCSLE-ITLKEKHQKELQSLKN 872
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREkHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 873 EYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHE-KEAVICLQNEKDQ------KLLEMENIMHSQN 945
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERaKKAGAQRKEEEAErkqlqaKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 946 CEIKELKQSreivledlkklHVENDEKLQLLRAEL----QSLEQSHLKELEDTLQVRHIQEFEKVMTDHRISLEELKKEN 1021
Cdd:pfam07888 192 KEFQELRNS-----------LAQRDTQVLQLQDTIttltQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEEL 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1022 QQIINQIQESHAAVIQEKeQQLQELKLKVSDLSdmrckleveLALKEAETdeikilleeSRAQQKETLKSLLEQETEnlr 1101
Cdd:pfam07888 261 SSMAAQRDRTQAELHQAR-LQAAQLTLQLADAS---------LALREGRA---------RWAQERETLQQSAEADKD--- 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1102 tEISKLNQKIQDNNENYQVGLAE---LRTLMTIEKDqCISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIE 1178
Cdd:pfam07888 319 -RIEKLSAELQRLEERLQEERMErekLEVELGREKD-CNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQ 396
|
410
....*....|.
gi 1622958758 1179 LQSKLNSELSA 1189
Cdd:pfam07888 397 LEQRLETVADA 407
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
951-1216 |
8.82e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 8.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 951 LKQSREIVLEDLKKL---HVEN------DEKLQLLRAELQSLEQsHLKELEDTLQVRHIQEFEKVMTDHRiSLEELKKEN 1021
Cdd:PRK05771 14 LKSYKDEVLEALHELgvvHIEDlkeelsNERLRKLRSLLTKLSE-ALDKLRSYLPKLNPLREEKKKVSVK-SLEELIKDV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1022 QQIINQIQEShaavIQEKEQQLQELKLKVSDLSDMRCKLE----VELALKEAETDE-IKILLEESRAQQKETLKSLLEQE 1096
Cdd:PRK05771 92 EEELEKIEKE----IKELEEEISELENEIKELEQEIERLEpwgnFDLDLSLLLGFKyVSVFVGTVPEDKLEELKLESDVE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1097 TEnlrTEISKLNQK----IQDNNENYQVGLAELRTL----MTIEKDQCISELISRHEEESSILKAELNKvtslhhqafei 1168
Cdd:PRK05771 168 NV---EYISTDKGYvyvvVVVLKELSDEVEEELKKLgferLELEEEGTPSELIREIKEELEEIEKERES----------- 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1622958758 1169 entLKEQIIELQSKLNSELSALEkqkdEKITQQEEKYEAIIQNLEKDK 1216
Cdd:PRK05771 234 ---LLEELKELAKKYLEELLALY----EYLEIELERAEALSKFLKTDK 274
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
838-1350 |
1.05e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 838 KCTAVEIRNIIEKVKCSLEITLkekhqKELQSLKNEYegkldalIKETEENENKIKKLKGELVCLEEVLQNKDNefalvk 917
Cdd:TIGR01612 1529 KYSALAIKNKFAKTKKDSEIII-----KEIKDAHKKF-------ILEAEKSEQKIKEIKKEKFRIEDDAAKNDK------ 1590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 918 hEKEAVICLQ---NEKDQKLLEMENI-MHSQNCeikeLKQSREIvledlkklhvenDEKLQLLRAELQSLEqshLKELED 993
Cdd:TIGR01612 1591 -SNKAAIDIQlslENFENKFLKISDIkKKINDC----LKETESI------------EKKISSFSIDSQDTE---LKENGD 1650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 994 TLQVrhIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKEQqlqelklkvsdlsdmrckleVELALKEaETDE 1073
Cdd:TIGR01612 1651 NLNS--LQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKN--------------------YEIGIIE-KIKE 1707
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1074 IKIlleeSRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENyqvgLAELRTLMTIEKDQCIselisrheEESSILKA 1153
Cdd:TIGR01612 1708 IAI----ANKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEK----LEEYNTEIGDIYEEFI--------ELYNIIAG 1771
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1154 ELNKVTSLHHQAFEIENT--------LKeqIIELQSKLNSELSALE-KQKDEKITQQEEKYEAIIQNLEKDKQKL----- 1219
Cdd:TIGR01612 1772 CLETVSKEPITYDEIKNTrinaqnefLK--IIEIEKKSKSYLDDIEaKEFDRIINHFKKKLDHVNDKFTKEYSKInegfd 1849
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1220 -------VISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVK---HLENQIAKSPAI------------ 1277
Cdd:TIGR01612 1850 disksieNVKNSTDENLLFDILNKTKDAYAGIIGKKYYSYKDEAEKIFINISKlanSINIQIQNNSGIdlfdniniails 1929
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1278 --DSTREDSSSLV------AELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVrtSLIAE--------QQTN-FNTVLTREK 1340
Cdd:TIGR01612 1930 slDSEKEDTLKFIpspekePEIYTKIRDSYDTLLDIFKKSQDLHKKEQDTL--NIIFEnqqlyekiQASNeLKDTLSDLK 2007
|
570
....*....|
gi 1622958758 1341 MRKENIINDL 1350
Cdd:TIGR01612 2008 YKKEKILNDV 2017
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1004-1217 |
1.14e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 50.03 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1004 EKVMTDHRISLEELKKENQQIINQIQEshaaVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEikilLEESRA 1083
Cdd:pfam05667 316 TSSPPTKVETEEELQQQREEELEELQE----QLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEE----LEKQYK 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1084 QQKETLKsLLEQETENlrteISKLNQKIQDNNENyqvgLAELRTLMtiEKDQciSELISRHEEessiLKAELNKvtslhh 1163
Cdd:pfam05667 388 VKKKTLD-LLPDAEEN----IAKLQALVDASAQR----LVELAGQW--EKHR--VPLIEEYRA----LKEAKSN------ 444
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1164 QAFEIENTLkEQIIELQSKLNsELSALEKQKDEKITQQEEKYEA----------------IIQNLEKDKQ 1217
Cdd:pfam05667 445 KEDESQRKL-EEIKELREKIK-EVAEEAKQKEELYKQLVAEYERlpkdvsrsaytrrileIVKNIKKQKE 512
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
840-1099 |
1.22e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 840 TAVEIRNIIEKVKCSLEITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLeEVLQNKDNEFALVKHE 919
Cdd:PRK05771 64 SYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL-EPWGNFDLDLSLLLGF 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 920 KEAVI---CLQNEKDQKLLEMENIMHSQncEIKELKQSREIVLEDLKKLHVENDEKLQllRAELQSLEQSHLKELEDTLq 996
Cdd:PRK05771 143 KYVSVfvgTVPEDKLEELKLESDVENVE--YISTDKGYVYVVVVVLKELSDEVEEELK--KLGFERLELEEEGTPSELI- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 997 vRHIQEfekvmtdhriSLEELKKENQQIINQiqeshaavIQEKEQQLQELKLKVSDLSDMRcKLEVELALKEAETDEIKI 1076
Cdd:PRK05771 218 -REIKE----------ELEEIEKERESLLEE--------LKELAKKYLEELLALYEYLEIE-LERAEALSKFLKTDKTFA 277
|
250 260
....*....|....*....|....*.
gi 1622958758 1077 L---LEESRAqqkETLKSLLEQETEN 1099
Cdd:PRK05771 278 IegwVPEDRV---KKLKELIDKATGG 300
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1167-1311 |
2.37e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.01 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1167 EIENTLKEQIIELQ---SKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLvisqeQDREQLIQKlnceKDEAIQ 1243
Cdd:PRK12704 50 EAEAIKKEALLEAKeeiHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL-----EKREEELEK----KEKELE 120
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622958758 1244 TALKEFILEREVVEKQLLEKVKHLENqIAKspaidSTREDS-SSLVAELQEKLQEEKAKFLEQLEEQEK 1311
Cdd:PRK12704 121 QKQQELEKKEEELEELIEEQLQELER-ISG-----LTAEEAkEILLEKVEEEARHEAAVLIKEIEEEAK 183
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
779-1128 |
2.43e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 779 DTNVCGKENFGdhaSLNVQLERcrVVAQDSHFSIQTIKEDLCHFRTFVQKEQcDFSNSLKCTAVEIRNIIEKVKCSLEIT 858
Cdd:pfam12128 571 DGSVGGELNLY---GVKLDLKR--IDVPEWAASEEELRERLDKAEEALQSAR-EKQAAAEEQLVQANGELEKASREETFA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 859 LK--EKHQKELQSLKNEYEGKLDALIKETEEN----ENKIKKLKGELVCLEEVLQnkdnefALVKHEKEAVICLQNEKDQ 932
Cdd:pfam12128 645 RTalKNARLDLRRLFDEKQSEKDKKNKALAERkdsaNERLNSLEAQLKQLDKKHQ------AWLEEQKEQKREARTEKQA 718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 933 KLLEMENIMHSQNCEIKELKQSREIVLE------------DLKKLHVENDeKLQLLRAELQSLEQShlkeLEDTLQVRH- 999
Cdd:pfam12128 719 YWQVVEGALDAQLALLKAAIAARRSGAKaelkaletwykrDLASLGVDPD-VIAKLKREIRTLERK----IERIAVRRQe 793
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1000 IQEFEKVMTD----HRISLEELKKENQQIINQIQESHAAVIQEKEQQLQEL--KLKVSD---------LSDMRCKLEVEL 1064
Cdd:pfam12128 794 VLRYFDWYQEtwlqRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLemERKASEkqqvrlsenLRGLRCEMSKLA 873
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622958758 1065 ALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNN-----ENYQVGLAELRTL 1128
Cdd:pfam12128 874 TLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSgsglaETWESLREEDHYQ 942
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
870-1116 |
2.56e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 870 LKNEYEGKLDALIKETEENENKIKKLKgelvclEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNcEIK 949
Cdd:PRK01156 470 IINHYNEKKSRLEEKIREIEIEVKDID------EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN-ELK 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 950 ELKQSREIVLEDLKKLHVE-----NDEKLQLLrAELQSLE-----------QSHLKELEDTLQvRHIQEFEKVMTDHRIS 1013
Cdd:PRK01156 543 DKHDKYEEIKNRYKSLKLEdldskRTSWLNAL-AVISLIDietnrsrsneiKKQLNDLESRLQ-EIEIGFPDDKSYIDKS 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1014 LEELKKENQQIINQIQEshaavIQEKEQQLQELKLKVSDLSDMRCKL-EVELALKE--AETDEIKILLEESRAQQKETLK 1090
Cdd:PRK01156 621 IREIENEANNLNNKYNE-----IQENKILIEKLRGKIDNYKKQIAEIdSIIPDLKEitSRINDIEDNLKKSRKALDDAKA 695
|
250 260
....*....|....*....|....*...
gi 1622958758 1091 SLLEQET--ENLRTEISKLNQKIQDNNE 1116
Cdd:PRK01156 696 NRARLEStiEILRTRINELSDRINDINE 723
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1123-1265 |
2.85e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 49.05 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1123 AELRTLMTIEKDQcISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSALEKQKDEKITQQE 1202
Cdd:PRK00409 505 EEAKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622958758 1203 EKYEAIIQNLEKDKQKLVISQ-EQDREQLIQKLNcekdEAIQTALKEFILEREVVEK-QLLEKVK 1265
Cdd:PRK00409 584 KEADEIIKELRQLQKGGYASVkAHELIEARKRLN----KANEKKEKKKKKQKEKQEElKVGDEVK 644
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
853-1327 |
3.89e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 853 CSLEITLKEKHQKELQSLKNEYE-------GKLDALIKETEENENKIKKLKGELVCLEE-----VLQNKDNEFALVKHEK 920
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEamisdleERLKKEEKGRQELEKAKRKLEGESTDLQEqiaelQAQIAELRAQLAKKEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 921 E---AVICLQNEKDQKLLEMENI--MHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAelqsleqshlkELEDTL 995
Cdd:pfam01576 244 ElqaALARLEEETAQKNNALKKIreLEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT-----------ELEDTL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 996 QVRHIQE-----FEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAE 1070
Cdd:pfam01576 313 DTTAAQQelrskREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1071 TDEIKILLEESRAQQKETLKSLLE-----QETENLRTEISKLNQKIQDNNENYQVGLAELRTlMTIEKDQCISELISRHE 1145
Cdd:pfam01576 393 LRTLQQAKQDSEHKRKKLEGQLQElqarlSESERQRAELAEKLSKLQSELESVSSLLNEAEG-KNIKLSKDVSSLESQLQ 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1146 EESSILKAELNKVTSLHHQAFEIE---NTLKEQI---IELQSKLNSELSALEKQKDEKITQQEEKYEAiIQNLEKDKQKL 1219
Cdd:pfam01576 472 DTQELLQEETRQKLNLSTRLRQLEderNSLQEQLeeeEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT-LEALEEGKKRL 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1220 VISQEQDREQLIQK-LNCEKDEAIQTALKEFI--------LEREVVeKQLLEKVKHLENQIAKSPAIDSTR-EDSSSLVA 1289
Cdd:pfam01576 551 QRELEALTQQLEEKaAAYDKLEKTKNRLQQELddllvdldHQRQLV-SNLEKKQKKFDQMLAEEKAISARYaEERDRAEA 629
|
490 500 510
....*....|....*....|....*....|....*...
gi 1622958758 1290 ELQEKlqEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAE 1327
Cdd:pfam01576 630 EAREK--ETRALSLARALEEALEAKEELERTNKQLRAE 665
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
841-1475 |
4.63e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 4.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 841 AVEIRNIiEKVKCSLEITLKEKHQKELQSLKNEYEGKLDAlIKETEEnenkIKKLKGELVCLEEVLQNKD---NEFALVK 917
Cdd:PTZ00121 1190 AEELRKA-EDARKAEAARKAEEERKAEEARKAEDAKKAEA-VKKAEE----AKKDAEEAKKAEEERNNEEirkFEEARMA 1263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 918 HEKEAVICLQNEKDQKLLEMENIMHSQNCEikELKQSREI--------------VLEDLKKLHVENDEKLQLLRAELQSL 983
Cdd:PTZ00121 1264 HFARRQAAIKAEEARKADELKKAEEKKKAD--EAKKAEEKkkadeakkkaeeakKADEAKKKAEEAKKKADAAKKKAEEA 1341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 984 EQS-HLKELEDTLQVRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAviQEKEQQLQELKLKVSDLSDMRC-KLE 1061
Cdd:PTZ00121 1342 KKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA--DEAKKKAEEDKKKADELKKAAAaKKK 1419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1062 VELALKEAE----TDEIKILLEESRAQQKETLKSLLEQETENL--RTEISKLNQKIQDNNEnyqvglaelrtlmtiEKDQ 1135
Cdd:PTZ00121 1420 ADEAKKKAEekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkKAEEAKKADEAKKKAE---------------EAKK 1484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1136 ciSELISRHEEESSILKAELNKVTSLHHQAFEIENTlkeqiiELQSKLNSELSALEKQKDEKITQQEEKYEAiiqnlEKD 1215
Cdd:PTZ00121 1485 --ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA------EEAKKADEAKKAEEAKKADEAKKAEEKKKA-----DEL 1551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1216 KQKLVISQEQDREQLIQKLNCEKDEAIQTALKEfilEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKL 1295
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1296 QEEKAKF--LEQLEEQEKRKNEEMQNvrtsliAEQQtnfNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSE 1373
Cdd:PTZ00121 1629 EEEKKKVeqLKKKEAEEKKKAEELKK------AEEE---NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1374 DRARLLEEKKKLEEEVSKlrsssfvpSPYVATAPELYGACAPELPGESDRSAvETADEGRVDSAMETSMMSVQENIHMLS 1453
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKK--------AEELKKAEEENKIKAEEAKKEAEEDK-KKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
650 660
....*....|....*....|..
gi 1622958758 1454 EEKQRIMLLERTLQLKEEENKR 1475
Cdd:PTZ00121 1771 EEIRKEKEAVIEEELDEEDEKR 1792
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1036-1375 |
5.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1036 IQEKEQQLQELKLKVSDLSDMRCKLEVELALKEaETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDnn 1115
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEK-- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1116 enyqvglaelrtlmtiekdqcISELISRHEEESSILKAELNKVTSlhhqafEIENTLKEQIIELQSKLNS---ELSALEK 1192
Cdd:TIGR02169 256 ---------------------LTEEISELEKRLEEIEQLLEELNK------KIKDLGEEEQLRVKEKIGEleaEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1193 QKDEKITQQEEkyeaiiqnLEKDKQKLvisqeqdrEQLIQKLNCEKDEaiqtalkefiLEREVVEKQLLekvkhlenQIA 1272
Cdd:TIGR02169 309 SIAEKERELED--------AEERLAKL--------EAEIDKLLAEIEE----------LEREIEEERKR--------RDK 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1273 KSPAIDSTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRknEEMQNVRTSLIAEQQTNFNTvLTREKMRKENIINDLSD 1352
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL--EKLKREINELKRELDRLQEE-LQRLSEELADLNAAIAG 431
|
330 340
....*....|....*....|...
gi 1622958758 1353 KLKSTMQQQERDKDLIESLSEDR 1375
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQE 454
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
928-1306 |
5.98e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 47.52 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 928 NEKDQKLLEMENIMHSQNCEIKELKQS----REIVLEDLkklhvendEKLQLLRAELqsLEQSH-----LKELEDTLQ-- 996
Cdd:PRK04778 108 NEIESLLDLIEEDIEQILEELQELLESeeknREEVEQLK--------DLYRELRKSL--LANRFsfgpaLDELEKQLEnl 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 997 VRHIQEFEK------VMTDHRIsLEELKKEN---QQIINQIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLevelalk 1067
Cdd:PRK04778 178 EEEFSQFVEltesgdYVEAREI-LDQLEEELaalEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHL------- 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1068 eaetDEIKIL--LEESRAQQKETLKSLLEQETENLRTEISKLNQKIqdnNENYQVGLAELRTLMTIEKDQ-CISELISRH 1144
Cdd:PRK04778 250 ----DHLDIEkeIQDLKEQIDENLALLEELDLDEAEEKNEEIQERI---DQLYDILEREVKARKYVEKNSdTLPDFLEHA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1145 EEESSILKAELNKVTslhhQAFEIENTLkeqiIELQSKLNSELSALEKQKD---EKITQQEEKYEAIIQNLEKDKQKL-V 1220
Cdd:PRK04778 323 KEQNKELKEEIDRVK----QSYTLNESE----LESVRQLEKQLESLEKQYDeitERIAEQEIAYSELQEELEEILKQLeE 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1221 ISQEQdrEQLIQKL-NCEKDEAI-QTALKEFILEREVVeKQLLEK--------------------VKHLENQIAKSP--- 1275
Cdd:PRK04778 395 IEKEQ--EKLSEMLqGLRKDELEaREKLERYRNKLHEI-KRYLEKsnlpglpedylemffevsdeIEALAEELEEKPinm 471
|
410 420 430
....*....|....*....|....*....|....
gi 1622958758 1276 -AIDSTREDSSSLVAELQEKLQE--EKAKFLEQL 1306
Cdd:PRK04778 472 eAVNRLLEEATEDVETLEEETEElvENATLTEQL 505
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1081-1362 |
6.47e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1081 SRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNEN--------YQVGLAELRTLMT-IEKDQCISELISRHEE----E 1147
Cdd:COG5022 804 SLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFslkaevliQKFGRSLKAKKRFsLLKKETIYLQSAQRVElaerQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1148 SSILKAELNKVTSLHhqafEIENTLKEQIIELQSKLNSELSALEKQKDEKITqqeeKYEAIIQNLEKDKQKLVISQEQDR 1227
Cdd:COG5022 884 LQELKIDVKSISSLK----LVNLELESEIIELKKSLSSDLIENLEFKTELIA----RLKKLLNNIDLEEGPSIEYVKLPE 955
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1228 EQLIQKLNCEKDEAIQT---ALKEFILEREVVEKQLLEKVKHleNQIAKSPAIDSTR-EDSSSLVAELQEKLQEEKA--K 1301
Cdd:COG5022 956 LNKLHEVESKLKETSEEyedLLKKSTILVREGNKANSELKNF--KKELAELSKQYGAlQESTKQLKELPVEVAELQSasK 1033
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1302 FLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTreKMRKENIINDlsDKLKSTMQQQE 1362
Cdd:COG5022 1034 IISSESTELSILKPLQKLKGLLLLENNQLQARYKAL--KLRRENSLLD--DKQLYQLESTE 1090
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1186-1475 |
7.77e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 7.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1186 ELSALEKQKD-EKITQQEEKYEaiiqnLEKDKQKlVISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVvekQLLEKV 1264
Cdd:pfam17380 340 ERMAMERERElERIRQEERKRE-----LERIRQE-EIAMEISRMRELERLQMERQQKNERVRQELEAARKV---KILEEE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1265 KHLENQIAKSPAIDSTREDSSSLVAELQeKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSliAEQQTNFNTVLTREKmRKE 1344
Cdd:pfam17380 411 RQRKIQQQKVEMEQIRAEQEEARQREVR-RLEEERAREMERVRLEEQERQQQVERLRQQ--EEERKRKKLELEKEK-RDR 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1345 NIINDLSDKL--------KSTMQQQERDKDLIESLSEDRARlleekkkleeevsklrsssfvpspyvATAPElygacape 1416
Cdd:pfam17380 487 KRAEEQRRKIlekeleerKQAMIEEERKRKLLEKEMEERQK--------------------------AIYEE-------- 532
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622958758 1417 lpgESDRSAVEtadEGRVDSAMEtSMMSVQENIHMLSEEKQRIMLLER----TLQLKEEENKR 1475
Cdd:pfam17380 533 ---ERRREAEE---ERRKQQEME-ERRRIQEQMRKATEERSRLEAMEReremMRQIVESEKAR 588
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
953-1215 |
1.64e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 953 QSREIVlEDLKKLHVendeklqllRAELQSLEQSHLKELED-----TLQVRHIQEFEKVMTDHRISLEELKKENQQIINQ 1027
Cdd:PHA02562 151 ARRKLV-EDLLDISV---------LSEMDKLNKDKIRELNQqiqtlDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQN 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1028 IQESHAAVIQEKEQQLQELKLKVSDLSdmRCKLEVELALKEAETDEIKIlleesrAQQKETLKSLLEQETEN-------- 1099
Cdd:PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNLV--MDIEDPSAALNKLNTAAAKI------KSKIEQFQKVIKMYEKGgvcptctq 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1100 -LRTEISKLnQKIQDNNENYQVGLAELrtlmtiekDQCISELISRHEE--ESSILKAELNKVTSLHHQAFEIENT----L 1172
Cdd:PHA02562 293 qISEGPDRI-TKIKDKLKELQHSLEKL--------DTAIDELEEIMDEfnEQSKKLLELKNKISTNKQSLITLVDkakkV 363
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1173 KEQIIELQSKL---NSELSALEKQKDEKITQQ----EEKYE-AIIQNLEKD 1215
Cdd:PHA02562 364 KAAIEELQAEFvdnAEELAKLQDELDKIVKTKselvKEKYHrGIVTDLLKD 414
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
1182-1273 |
1.72e-04 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 43.34 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1182 KLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLL 1261
Cdd:smart00935 18 AAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKIL 97
|
90
....*....|..
gi 1622958758 1262 EKVKHLENQIAK 1273
Cdd:smart00935 98 DKINKAIKEVAK 109
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
838-1364 |
1.97e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 838 KCTAVEIRNIIEKVKCSLEITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEfalvk 917
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE----- 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 918 HEKEAVICLQNEKDQKLLEmenimhsqnceikELKQSREIV--LEDLKKlhvENDEKLQLLRAELQSLEQSHLKELEDTL 995
Cdd:PTZ00121 1403 DKKKADELKKAAAAKKKAD-------------EAKKKAEEKkkADEAKK---KAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 996 QVRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEK---EQQLQELKLKVSDLSDMRCKLEVELALKEAE-- 1070
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkadEAKKAEEAKKADEAKKAEEAKKADEAKKAEEkk 1546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1071 -TDEIKILLEESRAQQKETL-KSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEes 1148
Cdd:PTZ00121 1547 kADELKKAEELKKAEEKKKAeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-- 1624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1149 sILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSALEKQKDE----------KITQQEEKYEAIIQNLEKDKQK 1218
Cdd:PTZ00121 1625 -LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEedkkkaeeakKAEEDEKKAAEALKKEAEEAKK 1703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1219 LVISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEE 1298
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1299 KAKfleqlEEQEKRKNEEMQNVR-----TSLIAEQQTNFNTVLTREKMRKENIINDLSDklKSTMQQQERD 1364
Cdd:PTZ00121 1784 ELD-----EEDEKRRMEVDKKIKdifdnFANIIEGGKEGNLVINDSKEMEDSAIKEVAD--SKNMQLEEAD 1847
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
888-1298 |
2.25e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.19 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 888 NENKIKKLKgelvCLEEVLQnkdnEFALVKHEkeaviCLQNEKDQKLLEMEN-----------IMHSQNCEIKELKQSRE 956
Cdd:PTZ00108 968 ENGKIKKYS----DALDILK----EFYLVRLD-----LYKKRKEYLLGKLERelarlsnkvrfIKHVINGELVITNAKKK 1034
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 957 IVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDH----RISLEELKKENqqiINQIQESH 1032
Cdd:PTZ00108 1035 DLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYdyllSMPIWSLTKEK---VEKLNAEL 1111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1033 AaviqEKEQQLQELK------LKVSDLSdmrcklEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETEnLRTEISK 1106
Cdd:PTZ00108 1112 E----KKEKELEKLKnttpkdMWLEDLD------KFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPK-LKKKEKK 1180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1107 LNQKIQDNnenyqvglaeLRTLMTIEKDQCISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLN-- 1184
Cdd:PTZ00108 1181 KKKSSADK----------SKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNns 1250
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1185 SELSALEKQKDEKITQQEEKYEAIIQNLEK-DKQKLVISQEQDREQLIQKLncEKDEAIQTALKEFILEREVVEKQLLEK 1263
Cdd:PTZ00108 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAvQYSPPPPSKRPDGESNGGSK--PSSPTKKKVKKRLEGSLAALKKKKKSE 1328
|
410 420 430
....*....|....*....|....*....|....*
gi 1622958758 1264 VKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEE 1298
Cdd:PTZ00108 1329 KKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
959-1272 |
2.35e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 959 LEDLKKLHVENDEKLQLLRAELQSLEQSHLK--ELEDTLQVRHIQEF--EKVMTDHRISLEELKKENQQIinqiqESHAA 1034
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKacEIRDQITSKEAQLEssREIVKSYENELDPLKNRLKEI-----EHNLS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1035 VIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLksllEQETENLRTEISKLNQKIQD- 1113
Cdd:TIGR00606 263 KIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREK----ERELVDCQRELEKLNKERRLl 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1114 NNENYQVGLAELRTLMTIEKDQCISeLISRHEEESSILKAELNKVTSLHHQAFEIENTLK------EQIIELQSKLNSEL 1187
Cdd:TIGR00606 339 NQEKTELLVEQGRLQLQADRHQEHI-RARDSLIQSLATRLELDGFERGPFSERQIKNFHTlvierqEDEAKTAAQLCADL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1188 SALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNC--------EKDEAIQTALKEF-ILEREVVEK 1258
Cdd:TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLegssdrilELDQELRKAERELsKAEKNSLTE 497
|
330
....*....|....
gi 1622958758 1259 QLLEKVKHLENQIA 1272
Cdd:TIGR00606 498 TLKKEVKSLQNEKA 511
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1025-1160 |
2.43e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1025 INQIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKS----LLEQETENL 1100
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeyeALQKEIESL 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622958758 1101 RTEISKLNQKIQDNN---ENYQVGLAELRTLMTIEKDQcISELISRHEEESSILKAELNKVTS 1160
Cdd:COG1579 102 KRRISDLEDEILELMeriEELEEELAELEAELAELEAE-LEEKKAELDEELAELEAELEELEA 163
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
821-1240 |
2.57e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 821 HFRTFVQKEQCDFSNSLKCTAVEIRNIIE-KVKCSLEITLKEKHQKELQSLKNEYeGKLDALIKETEENENKIKKLKGEl 899
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHPNPARQDIDNpGPLTRRMQRGEQTYAQLETSEEDVY-HQLTSERKQRASLKEQMQEIQQS- 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 900 vclEEVLQNKDNEFalvkheKEAVICLQNEKD--QKLLEMENIMHSQ-NCEIKELKQSREIVLEDLKK-LHVEN-DEKLQ 974
Cdd:TIGR00618 572 ---FSILTQCDNRS------KEDIPNLQNITVrlQDLTEKLSEAEDMlACEQHALLRKLQPEQDLQDVrLHLQQcSQELA 642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 975 LLRAELQSLEQSHLKElEDTLQVRHIQEFEKVMTDHRISLE-ELKKENQQI------INQIQEshaaVIQEKEQQLQELK 1047
Cdd:TIGR00618 643 LKLTALHALQLTLTQE-RVREHALSIRVLPKELLASRQLALqKMQSEKEQLtywkemLAQCQT----LLRELETHIEEYD 717
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1048 LKVSDLSDMRCKLEVELalkEAETDEIKILLEESRAQQKETLKSL-LEQETENLR--------TEISKLNQKIQDNNENY 1118
Cdd:TIGR00618 718 REFNEIENASSSLGSDL---AAREDALNQSLKELMHQARTVLKARtEAHFNNNEEvtaalqtgAELSHLAAEIQFFNRLR 794
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1119 QvglaelrtlmtiEKDQCISELISRHEEEssILKAELNKVTSLHHQAFEIENTLkeQIIELQSKLNSELSALEKQKDEKI 1198
Cdd:TIGR00618 795 E------------EDTHLLKTLEAEIGQE--IPSDEDILNLQCETLVQEEEQFL--SRLEEKSATLGEITHQLLKYEECS 858
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1622958758 1199 TQQEEKYEAIIQnlekdkqklvISQEQDREQLIQKLNCEKDE 1240
Cdd:TIGR00618 859 KQLAQLTQEQAK----------IIQLSDKLNGINQIKIQFDG 890
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
859-1240 |
2.58e-04 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 45.93 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 859 LKEKHQKELQSLKNEyEGKLDALIKETEENENKIKKLKGELvclEEVLQNKDNEfalvkHEKEAVICLQNEKDQKLLEmE 938
Cdd:PTZ00341 774 LEQRSKANKEELANE-NNKLMNILKEYFGNNEQINSITYNF---ENINLNEDNE-----NGSKKILDLNHKDQKEIFE-E 843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 939 NIMHSQNCEIKELKQSREIVLEDLkkLHVEN-DEKLqlLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTD-------H 1010
Cdd:PTZ00341 844 IISYIVDISLSDIENTAKNAAEQI--LSDEGlDEKK--LKKRAESLKKLANAIEKYAGGGKKDKKAKKKDAKdlsgniaH 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1011 RISL--EELKKENQQIINQIQESHAAVIQEK-EQQLQElklkvsdlsDMRCKLE--VELALKEAETDEIKILLEESRAQQ 1085
Cdd:PTZ00341 920 EINLinKELKNQNENVPEHLKEHAEANIEEDaEENVEE---------DAEENVEenVEENVEENVEENVEENVEENVEEN 990
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1086 KEtlKSLLEQETENLRTEISK-LNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESSILKAELNKVTSLHHQ 1164
Cdd:PTZ00341 991 VE--ENVEENVEENIEENVEEnVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEEN 1068
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622958758 1165 AFEIENTLKEQIIE-LQSKLNSELSALEKQKDEKITQQEEkyeaiiQNLEKDKQKLVisqEQDREQLIQKLNCEKDE 1240
Cdd:PTZ00341 1069 VEEIEENIEENIEEnVEENVEENVEEIEENVEENVEENAE------ENAEENAEENA---EEYDDENPEEHNEEYDE 1136
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1153-1377 |
2.80e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1153 AELNK-VTSLHHQA------FEIENTLKEQIIELQSK----LNSELSALEKQKDEKiTQQEEKYEAIIQNLEKDKQKLVI 1221
Cdd:TIGR02168 196 NELERqLKSLERQAekaeryKELKAELRELELALLVLrleeLREELEELQEELKEA-EEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1222 SQEQDREQLiqklncekdEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAK 1301
Cdd:TIGR02168 275 EVSELEEEI---------EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1302 F------LEQLEEQEKRKNEEMQNvRTSLIAEQQTNFNTVltrekmRKEniINDLSDKLKSTMQQQERDKDLIESLSEDR 1375
Cdd:TIGR02168 346 LeelkeeLESLEAELEELEAELEE-LESRLEELEEQLETL------RSK--VAQLELQIASLNNEIERLEARLERLEDRR 416
|
..
gi 1622958758 1376 AR 1377
Cdd:TIGR02168 417 ER 418
|
|
| DUF4618 |
pfam15397 |
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins ... |
845-1049 |
3.84e-04 |
|
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins in this family are typically between 238 and 363 amino acids in length. There are two conserved sequence motifs: EYP and KCTPD.
Pssm-ID: 464704 [Multi-domain] Cd Length: 258 Bit Score: 44.17 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 845 RNIIEKVKCSLEITLkEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELvcleEVLQN-KDNEFALvkhekeav 923
Cdd:pfam15397 51 GTIISILEYSNKKQL-QQAKAELQEWEEKEESKLNKLEQQLEQLNAKIQKTQEEL----NFLSTyKDKEYPV-------- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 924 iclqnekdqKLLEMENIMH-------SQNCEIKELKQSREIVLEDLKKLHVENDEKLqllraeLQSLEQSHLKELEDTLQ 996
Cdd:pfam15397 118 ---------KAVQIANLVRqlqqlkdSQQDELDELEEMRRMVLESLSRKIQKKKEKI------LSSLAEKTLSPYQESLL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1622958758 997 --VRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKEQQLQELKLK 1049
Cdd:pfam15397 183 qkTRDNQVMLKEIEQFREFIDELEEEIPKLKAEVQQLQAQRQEPREVIFADVLLR 237
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
1182-1274 |
4.00e-04 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 42.90 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1182 KLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLL 1261
Cdd:COG2825 43 AAQKKLEKEFKKRQAELQKLEKELQALQEKLQKEAATLSEEERQKKERELQKKQQELQRKQQEAQQDLQKRQQELLQPIL 122
|
90
....*....|...
gi 1622958758 1262 EKVKHLENQIAKS 1274
Cdd:COG2825 123 EKIQKAIKEVAKE 135
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
886-1059 |
4.77e-04 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 43.20 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 886 EENENKIKKLKGelvcLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKL 965
Cdd:cd00176 33 ESVEALLKKHEA----LEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 966 HVENDEKLQLL----RAELQSLEQSHLKELED-TLQVRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAVIQEKE 1040
Cdd:cd00176 109 QQFFRDADDLEqwleEKEAALASEDLGKDLESvEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKL 188
|
170
....*....|....*....
gi 1622958758 1041 QQLQELKLKVSDLSDMRCK 1059
Cdd:cd00176 189 EELNERWEELLELAEERQK 207
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
877-1377 |
5.48e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 877 KLDALIKETEENENKIKKLKGELVCLEevlqnkdnefALVKHEKEAVICLQNEKDQKLLEMEnimhsqnceiKELKQSRE 956
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHLHFGYKSDE----------TLIASRQEERQETSAELNQLLRTLD----------DQWKEKRD 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 957 IVLEDLKKLhvenDEKLQLLRAELQSLEQSHLKELEDTLQVRHiQEFEKvMTDHRISLEELKKEnqqiINQIQESHAAVi 1036
Cdd:pfam12128 305 ELNGELSAA----DAAVAKDRSELEALEDQHGAFLDADIETAA-ADQEQ-LPSWQSELENLEER----LKALTGKHQDV- 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1037 qekEQQLQELKLKVSDlsdmrcKLEVELALKEAETDEIKilleESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNE 1116
Cdd:pfam12128 374 ---TAKYNRRRSKIKE------QNNRDIAGIKDKLAKIR----EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEY 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1117 NYQVGLAELRTLmtIEKDQCISELISRHEeessilkaelNKVTSLHHQAFEIENTLKEQiielqSKLNSELSALEKQKDe 1196
Cdd:pfam12128 441 RLKSRLGELKLR--LNQATATPELLLQLE----------NFDERIERAREEQEAANAEV-----ERLQSELRQARKRRD- 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1197 kitQQEEKYEAIIQNLEKDKQKLVISQEQDREQ---LIQKLNCEK---DEAIQTALKEFILER-----EVVEKQL----- 1260
Cdd:pfam12128 503 ---QASEALRQASRRLEERQSALDELELQLFPQagtLLHFLRKEApdwEQSIGKVISPELLHRtdldpEVWDGSVggeln 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1261 -------LEKVKH-----LENQI-AKSPAIDSTREDSSSLVAELQEKLQEEKAKfLEQLEEQEKRKNEEMQNVRTSLI-- 1325
Cdd:pfam12128 580 lygvkldLKRIDVpewaaSEEELrERLDKAEEALQSAREKQAAAEEQLVQANGE-LEKASREETFARTALKNARLDLRrl 658
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622958758 1326 ----AEQQTNFNTVLTREKMRKENIINDLS-------------------DKLKSTMQQQERDKDLIESLSEDRAR 1377
Cdd:pfam12128 659 fdekQSEKDKKNKALAERKDSANERLNSLEaqlkqldkkhqawleeqkeQKREARTEKQAYWQVVEGALDAQLAL 733
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1081-1365 |
5.72e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 5.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1081 SRAQQKETLKSLleqETENLRTEISKLNQKIQDNNEnyqvgLAELRTLMTIEKDQcISELISRHEEESSILKAELNKVtS 1160
Cdd:pfam17380 285 SERQQQEKFEKM---EQERLRQEKEEKAREVERRRK-----LEEAEKARQAEMDR-QAAIYAEQERMAMERERELERI-R 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1161 LHHQAFEIENTLKEQI-IELQSKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVisQEQDREqlIQKLNCEKD 1239
Cdd:pfam17380 355 QEERKRELERIRQEEIaMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKI--QQQKVE--MEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1240 EAIQTALKEFILEREvvekQLLEKVKhlENQIAKSPAIDSTREDSsslvaelqeklQEEKAKFLEQleEQEKRKNEEMQN 1319
Cdd:pfam17380 431 EARQREVRRLEEERA----REMERVR--LEEQERQQQVERLRQQE-----------EERKRKKLEL--EKEKRDRKRAEE 491
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1622958758 1320 VRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDK 1365
Cdd:pfam17380 492 QRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRRE 537
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
1023-1374 |
6.61e-04 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 44.82 E-value: 6.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1023 QIINQIQESHAAViQEKEQQLQELKLKVSDLsdmrcKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRT 1102
Cdd:PTZ00440 505 QIINSIKEKNNIV-NNNFKNIEDYYITIEGL-----KNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1103 EISKLNQKIQDNNE--NYQVGLAELRTLMTIEKDQCISELISRHEEESSI--------LKAELNKVTSL--HHQAFEIEN 1170
Cdd:PTZ00440 579 NVDHIKDIISLNDEidNIIQQIEELINEALFNKEKFINEKNDLQEKVKYIlnkfykgdLQELLDELSHFldDHKYLYHEA 658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1171 TLKEQIIELQSKLNSELSALEKQKDEKITQqeekyeaIIQNLEKDKQKLVISQEQDREQLIQKLNCEkdeaIQTALkefi 1250
Cdd:PTZ00440 659 KSKEDLQTLLNTSKNEYEKLEFMKSDNIDN-------IIKNLKKELQNLLSLKENIIKKQLNNIEQD----ISNSL---- 723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1251 lerevveKQLLEKVKHLENqiakspAIDSTREDSSSLvAELQEKLQEEKAKFLEQLEEQEKR-------KNEEMQNVRTS 1323
Cdd:PTZ00440 724 -------NQYTIKYNDLKS------SIEEYKEEEEKL-EVYKHQIINRKNEFILHLYENDKDlpdgkntYEEFLQYKDTI 789
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622958758 1324 LIAEQQTNFNTVLTRE--KMRKENI--INDLSDKLKS-TMQQQERDKDLIESLSED 1374
Cdd:PTZ00440 790 LNKENKISNDINILKEnkKNNQDLLnsYNILIQKLEAhTEKNDEELKQLLQKFPTE 845
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
927-1124 |
7.41e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 7.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 927 QNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVEND---EKLQLLRAELQSLEQShLKELEDTL--QVRHIQ 1001
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEalqAEIDKLQAEIAEAEAE-IEERREELgeRARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1002 EFEKVMTD--------------HRIS-LEELKKENQQIINQIQESHAAVIQEK---EQQLQELKLKVSDLSDMRCKLEVE 1063
Cdd:COG3883 97 RSGGSVSYldvllgsesfsdflDRLSaLSKIADADADLLEELKADKAELEAKKaelEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1064 LALKEAETDEikilLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAE 1124
Cdd:COG3883 177 QAEQEALLAQ----LSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
954-1190 |
8.06e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 954 SREIVLEDLKKLHVENDEKLQLLRAELQSLEQshLKELEDtlqvrhiqefEKVMTDHRISLEELKKENQQIINQIQ-ESH 1032
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEE--LQELLR----------EAEELEEELQLEELEQEIAALLAEAGvEDE 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1033 AAVIQ--EKEQQLQELKLKVSDLSDM--RCKLEVELALKEAETDEIKILLEESRAQQKEtlkslLEQETENLRTEISKLN 1108
Cdd:COG4717 385 EELRAalEQAEEYQELKEELEELEEQleELLGELEELLEALDEEELEEELEELEEELEE-----LEEELEELREELAELE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1109 QKIQDnnenyqvglaelrtlmtIEKDQCISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELS 1188
Cdd:COG4717 460 AELEQ-----------------LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERAS 522
|
..
gi 1622958758 1189 AL 1190
Cdd:COG4717 523 EY 524
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
838-1115 |
9.66e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.07 E-value: 9.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 838 KCTAVEIRNIIEKVKCSLeITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCL-EEVLQNKDNEFALV 916
Cdd:PLN03229 428 KTPVRELEGEVEKLKEQI-LKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLrEEFSKANSQDQLMH 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 917 KHEKEAVICLQNEKDQKL------------LEMENIMHSQNCEIKELKQSREIVLEDLKKLHVEND-----EKLQLLRAE 979
Cdd:PLN03229 507 PVLMEKIEKLKDEFNKRLsrapnylslkykLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDrpeikEKMEALKAE 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 980 LQSLEQSHLKELEDTL-----QVRHIQEFE--KVMTDHRISLEELKKENQQIINQI-----QESHAAVIQEKEQQLQELk 1047
Cdd:PLN03229 587 VASSGASSGDELDDDLkekveKMKKEIELElaGVLKSMGLEVIGVTKKNKDTAEQTpppnlQEKIESLNEEINKKIERV- 665
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1048 LKVSDLSDMRCKLEVELA-----LKEAETDEIKILLEESRAQQKETLKSL-LEQETENLRTEISKLNQKIQDNN 1115
Cdd:PLN03229 666 IRSSDLKSKIELLKLEVAkasktPDVTEKEKIEALEQQIKQKIAEALNSSeLKEKFEELEAELAAARETAAESN 739
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1093-1363 |
9.84e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 9.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1093 LEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLmtiekdqciselisrhEEESSILKAELNKvtslhhqafeientL 1172
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----------------ERRIAALARRIRA--------------L 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1173 KEQIIELQSKLNsELSALEKQKDEKITQQEEKYEAIIQNLEKdkqklviSQEQDREQLIqkLNcekDEAIQTALKEFILE 1252
Cdd:COG4942 75 EQELAALEAELA-ELEKEIAELRAELEAQKEELAELLRALYR-------LGRQPPLALL--LS---PEDFLDAVRRLQYL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1253 REVVEkqllekvkHLENQIAkspAIDSTREDSSSLVAELQEKlQEEKAKFLEQLEEQEKRKNEEMQNvRTSLIAEQQTNF 1332
Cdd:COG4942 142 KYLAP--------ARREQAE---ELRADLAELAALRAELEAE-RAELEALLAELEEERAALEALKAE-RQKLLARLEKEL 208
|
250 260 270
....*....|....*....|....*....|...
gi 1622958758 1333 NTVLTR--EKMRKENIINDLSDKLKSTMQQQER 1363
Cdd:COG4942 209 AELAAElaELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1178-1395 |
1.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1178 ELQSKLNSELSALEKQKDE---KITQQEEKYEAIIQNLEKDKQKLVisqeqDREQLIQKLNcEKDEAIQTALKEFILERE 1254
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAElekELAALKKEEKALLKQLAALERRIA-----ALARRIRALE-QELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1255 VVEKQLLEKVKHLENQIAKspAIDSTREDSSSLVAELQEKLQEEK-AKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTnfn 1333
Cdd:COG4942 94 ELRAELEAQKEELAELLRA--LYRLGRQPPLALLLSPEDFLDAVRrLQYLKYLAPARREQAEELRADLAELAALRAE--- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622958758 1334 tvLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEekkkleeEVSKLRSS 1395
Cdd:COG4942 169 --LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA-------ELAELQQE 221
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
975-1332 |
1.14e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 43.59 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 975 LLRAELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRISLEELK------------KENQQIINQIQESHAAV---IQEK 1039
Cdd:pfam09731 47 VLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKiprqsgvssevaEEEKEATKDAAEAKAQLpksEQEK 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1040 EQQLQELKLKVSDLSDmrcklEVELALKEAETDEIKILLEE-------------SRAQQKETLKSLLEQETENLRTEISK 1106
Cdd:pfam09731 127 EKALEEVLKEAISKAE-----SATAVAKEAKDDAIQAVKAHtdslkeasdtaeiSREKATDSALQKAEALAEKLKEVINL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1107 LNQKiQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESSILkaelNKVTSLHHQAFEIENT-LKEQIIELQSKLNs 1185
Cdd:pfam09731 202 AKQS-EEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLV----DQYKELVASERIVFQQeLVSIFPDIIPVLK- 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1186 ELSALEKQKDEKITqqeEKYEAIIQNLEKDKQKLVISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVK 1265
Cdd:pfam09731 276 EDNLLSNDDLNSLI---AHAHREIDQLSKKLAELKKREEKHIERALEKQKEELDKLAEELSARLEEVRAADEAQLRLEFE 352
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622958758 1266 HlenqiakspAIDSTREDS-SSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNF 1332
Cdd:pfam09731 353 R---------EREEIRESYeEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGR 411
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1069-1364 |
1.15e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1069 AETDEIKILLEESRAQQKETLKSL--LEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLmtiekdqciSELISRHEE 1146
Cdd:COG4372 38 FELDKLQEELEQLREELEQAREELeqLEEELEQARSELEQLEEELEELNEQLQAAQAELAQA---------QEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1147 ESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLnselsaleKQKDEKITQQEEKYEAIIQNLEKDKQKLvisQEQD 1226
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEI--------AEREEELKELEEQLESLQEELAALEQEL---QALS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1227 REQLIQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKFLEQL 1306
Cdd:COG4372 178 EAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVIL 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622958758 1307 EEQEKRKNEEMQNVRTSLIA-EQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERD 1364
Cdd:COG4372 258 KEIEELELAILVEKDTEEEElEIAALELEALEEAALELKLLALLLNLAALSLIGALEDA 316
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
976-1315 |
1.21e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 976 LRAELQSLEQShlKELEDTLQVRHIQEFEKVMTDHRISLEELKKENQqiinqiqeshaaVIQEKEQQLQELKLKVSDLSD 1055
Cdd:PRK10929 28 ITQELEQAKAA--KTPAQAEIVEALQSALNWLEERKGSLERAKQYQQ------------VIDNFPKLSAELRQQLNNERD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1056 MRCKLEVELALKEAETDEIKI---LLEESRAQQKETLK--------SLLEQETENLRTEISKLNQKIQD-NNENYQVGLA 1123
Cdd:PRK10929 94 EPRSVPPNMSTDALEQEILQVssqLLEKSRQAQQEQDRareisdslSQLPQQQTEARRQLNEIERRLQTlGTPNTPLAQA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1124 ELrTLMTIEK-------DQC-ISELISRHEEESSILKAEL----------------NKVTSLHHQAFE--IENT--LKEQ 1175
Cdd:PRK10929 174 QL-TALQAESaalkalvDELeLAQLSANNRQELARLRSELakkrsqqldaylqalrNQLNSQRQREAEraLESTelLAEQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1176 IIEL------QSKLNSELSALekqkdekITQQEEKYEAIiqnleKDKQKLVISQEQdreQLIQKLNCEKDEA----IQTA 1245
Cdd:PRK10929 253 SGDLpksivaQFKINRELSQA-------LNQQAQRMDLI-----ASQQRQAASQTL---QVRQALNTLREQSqwlgVSNA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1246 LKEFI---------------LEREVVekQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLqeekakfleqLEEQE 1310
Cdd:PRK10929 318 LGEALraqvarlpempkpqqLDTEMA--QLRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRI----------LDAQL 385
|
....*
gi 1622958758 1311 KRKNE 1315
Cdd:PRK10929 386 RTQRE 390
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
858-1006 |
1.25e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 858 TLKEKHQKELQSLKNEYEG---KLDALIKETEENENKIKKLKGELVCLEEVLQN--------KDN-EFALVKHEKEAVIC 925
Cdd:COG1579 24 HRLKELPAELAELEDELAAleaRLEAAKTELEDLEKEIKRLELEIEEVEARIKKyeeqlgnvRNNkEYEALQKEIESLKR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 926 LQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQShLKELEDTLQVRHIQEFEK 1005
Cdd:COG1579 104 RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE-REELAAKIPPELLALYER 182
|
.
gi 1622958758 1006 V 1006
Cdd:COG1579 183 I 183
|
|
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
858-1047 |
1.28e-03 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 41.95 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 858 TLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKD---NEFALVKHEKEAV-ICLQNEKDQK 933
Cdd:pfam15665 18 ALKEAHEEEIQQILAETREKILQYKSKIGEELDLKRRIQTLEESLEQHERMKRqalTEFEQYKRRVEEReLKAEAEHRQR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 934 LLEMENimhsqncEIKELKQSREIVLEDLKKLHVENDeklQLLRAELQSLEQSHLKELEDTLQVRHIQ------EFEKVM 1007
Cdd:pfam15665 98 VVELSR-------EVEEAKRAFEEKLESFEQLQAQFE---QEKRKALEELRAKHRQEIQELLTTQRAQsasslaEQEKLE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1622958758 1008 TDHRISLEELKKENQQIINQIQEshaaVIQEKEQQLQELK 1047
Cdd:pfam15665 168 ELHKAELESLRKEVEDLRKEKKK----LAEEYEQKLSKAQ 203
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
856-1134 |
1.31e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 856 EITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLL 935
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 936 EMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQefEKVMTDHRISLE 1015
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ--ERLSEEYSLTLE 954
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1016 ELKKENQQIINQIQEShaaviqekEQQLQELKLKVSDLSdmrcklEVEL-ALKEAEtdEIKILLEESRAQQKETLKSL-- 1092
Cdd:TIGR02168 955 EAEALENKIEDDEEEA--------RRRLKRLENKIKELG------PVNLaAIEEYE--ELKERYDFLTAQKEDLTEAKet 1018
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 1093 LEQETENLRTEI-SKLNQKIQDNNENYQV--------GLAELRtlMTIEKD 1134
Cdd:TIGR02168 1019 LEEAIEEIDREArERFKDTFDQVNENFQRvfpklfggGEAELR--LTDPED 1067
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
404-538 |
1.36e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 42.76 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 404 KDASVLPDLCLSHANQLMIMLQNHRKLLDIKQKCTTAKQELANNLHV------RLKWCCFVMLHADQDGEKLQALLRLVI 477
Cdd:pfam04108 214 NDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDELLSALQLiaeiqsRLPEYLAALKEFEERWEEEKETIEDYL 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622958758 478 ELLERVkiVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESF 538
Cdd:pfam04108 294 SELEDL--REFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKF 352
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
970-1109 |
1.37e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 970 DEKLQLLRAELQSLEQSHLKELEdtlQVRHIQEFEKV---MTDHRISLEELKKENQQIINQIQESHAAVIQ---EKEQQL 1043
Cdd:PRK04863 512 AEQLQQLRMRLSELEQRLRQQQR---AERLLAEFCKRlgkNLDDEDELEQLQEELEARLESLSESVSEARErrmALRQQL 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1044 QELKLKVSDL--------------SDMRCKLEVELALKEAETDEIKILLEESRAQQKEtlKSLLEQETENLRTEISKLNQ 1109
Cdd:PRK04863 589 EQLQARIQRLaarapawlaaqdalARLREQSGEEFEDSQDVTEYMQQLLERERELTVE--RDELAARKQALDEEIERLSQ 666
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
865-1219 |
1.44e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.59 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 865 KELQSLKNEYEGKLDALIKETEENENKIKKLKGELvclEEVLQNKDNEFALVKHEKEAVICLQNEKDQKllemenimhsq 944
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEEL---KELAEKRDELNAQVKELREEAQELREKRDEL----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 945 NCEIKELKQSREIVLEDLKKLhvenDEKLQLLRAELQSLEQShlkeledtlqvrhiqefekvmtdhRISLEELKKENQQI 1024
Cdd:COG1340 70 NEKVKELKEERDELNEKLNEL----REELDELRKELAELNKA------------------------GGSIDKLRKEIERL 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1025 INQIQEShaAVIQEKEQQLqelklkVSDLSDMRCKLEvelALKEAEtdeikilleesraQQKETLKSLLEqETENLRTEI 1104
Cdd:COG1340 122 EWRQQTE--VLSPEEEKEL------VEKIKELEKELE---KAKKAL-------------EKNEKLKELRA-ELKELRKEA 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1105 SKLNQKIQDNNENYQvglaelrtlmtiEKDQCISELISRHEEessiLKAELNKVTSLHHQAFEIENTLKEQIIELQSKLN 1184
Cdd:COG1340 177 EEIHKKIKELAEEAQ------------ELHEEMIELYKEADE----LRKEADELHKEIVEAQEKADELHEEIIELQKELR 240
|
330 340 350
....*....|....*....|....*....|....*.
gi 1622958758 1185 SELSALEKQKDEKITQQEEKYEAIIQNLEKD-KQKL 1219
Cdd:COG1340 241 ELRKELKKLRKKQRALKREKEKEELEEKAEEiFEKL 276
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
771-1373 |
1.58e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.50 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 771 AIDSrrmQDTNVcgKENFGDHASLNVQLERCRvvaqDSHFSIQTIKEDLCHFRTFVQKEQCDFSNSLKCTAVeirNIIEK 850
Cdd:TIGR01612 1637 SIDS---QDTEL--KENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEI---GIIEK 1704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 851 VKcslEITLKEKhqKELQSLKNEYEGKLDALIKETEENEnkikkLKGelVCLEEVLQNKDNEFALVKHEkeaviclqnek 930
Cdd:TIGR01612 1705 IK---EIAIANK--EEIESIKELIEPTIENLISSFNTND-----LEG--IDPNEKLEEYNTEIGDIYEE----------- 1761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 931 dqkLLEMENIM-------HSQNCEIKELKQSREIVL-EDLKKLHVENDEKLQLLRAELQSLEQ--SHLKELEDTLQVRHI 1000
Cdd:TIGR01612 1762 ---FIELYNIIagcletvSKEPITYDEIKNTRINAQnEFLKIIEIEKKSKSYLDDIEAKEFDRiiNHFKKKLDHVNDKFT 1838
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1001 QEFEKV---MTDHRISLEELKKENQQ-----IINQIQESHAAVIQEKEQQLQELKLKV-SDLSDMRCKLEVELALKEAET 1071
Cdd:TIGR01612 1839 KEYSKInegFDDISKSIENVKNSTDEnllfdILNKTKDAYAGIIGKKYYSYKDEAEKIfINISKLANSINIQIQNNSGID 1918
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1072 --DEIKI-LLEESRAQQKETLK--------------------SLL------------EQETENLRTEISKLNQKIQDNNE 1116
Cdd:TIGR01612 1919 lfDNINIaILSSLDSEKEDTLKfipspekepeiytkirdsydTLLdifkksqdlhkkEQDTLNIIFENQQLYEKIQASNE 1998
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1117 NYQVglaelrtlmtiekdqcISELISRHEEESSILKAELNKVTSLHHQAFEIENTlkEQIIEL--QSKLNSELSALEKQK 1194
Cdd:TIGR01612 1999 LKDT----------------LSDLKYKKEKILNDVKLLLHKFDELNKLSCDSQNY--DTILELskQDKIKEKIDNYEKEK 2060
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1195 -----DEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREqliqkLNCEKDEAIQT--ALKE----FILEREVVEKQLLEK 1263
Cdd:TIGR01612 2061 ekfgiDFDVKAMEEKFDNDIKDIEKFENNYKHSEKDNHD-----FSEEKDNIIQSkkKLKElteaFNTEIKIIEDKIIEK 2135
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1264 vKHLENQIAKspaidsTREDS-----SSLVAELQEKLQEEkAKFLEQLEEQEKRKNEEMQNVRTSL---IAEQQTNFNTV 1335
Cdd:TIGR01612 2136 -NDLIDKLIE------MRKECllfsyATLVETLKSKVINH-SEFITSAAKFSKDFFEFIEDISDSLnddIDALQIKYNLN 2207
|
650 660 670
....*....|....*....|....*....|....*...
gi 1622958758 1336 LTREKMrkENIINDLSDKLKSTMQQQERDKDLIESLSE 1373
Cdd:TIGR01612 2208 QTKKHM--ISILADATKDHNNLIEKEKEATKIINNLTE 2243
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
861-1330 |
1.65e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 861 EKHQKELQSLKNEyEGKLDALIKETEENENKIKKLKGELVCLE-EVLQNKDNEFA-LVKHEKEAVICLQNEKDQKLLEME 938
Cdd:COG5022 878 ELAERQLQELKID-VKSISSLKLVNLELESEIIELKKSLSSDLiENLEFKTELIArLKKLLNNIDLEEGPSIEYVKLPEL 956
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 939 NIMHSQNCEIKELKQSREIVLEDLKKLHVE---NDEKLQLLRAELQSLE------QSHLKELEDTLQ--VRHIQEFEKVM 1007
Cdd:COG5022 957 NKLHEVESKLKETSEEYEDLLKKSTILVREgnkANSELKNFKKELAELSkqygalQESTKQLKELPVevAELQSASKIIS 1036
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1008 TDHRI-----SLEELKKENQQIINQIQESHAAVIQEKEQQLQELKLKVSDLSdmrckleVELALKEAETDEIKILLEESR 1082
Cdd:COG5022 1037 SESTElsilkPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLES-------TENLLKTINVKDLEVTNRNLV 1109
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1083 AQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQvglaelrtlMTIEKDQCISELISRHEEESSILK----AELNKV 1158
Cdd:COG5022 1110 KPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF---------QKLSVLQLELDGLFWEANLEALPSpppfAALSEK 1180
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1159 TSLHHQAFEIE--------NTLKEQIIELQSKLNSELSALEKQKD---EKITQQEEKY---EAIIQNLEKDKQklvisQE 1224
Cdd:COG5022 1181 RLYQSALYDEKsklsssevNDLKNELIALFSKIFSGWPRGDKLKKlisEGWVPTEYSTslkGFNNLNKKFDTP-----AS 1255
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1225 QDREQLIQKLNcekdeAIQTALKEFILEREVVEKqlleKVKHLeNQIAKSPAIDSTREDSSSLVAELQEKLQEEKAkfle 1304
Cdd:COG5022 1256 MSNEKLLSLLN-----SIDNLLSSYKLEEEVLPA----TINSL-LQYINVGLFNALRTKASSLRWKSATEVNYNSE---- 1321
|
490 500
....*....|....*....|....*.
gi 1622958758 1305 qlEEQEKRKNEEMQNVRTSLIAEQQT 1330
Cdd:COG5022 1322 --ELDDWCREFEISDVDEELEELIQA 1345
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1000-1306 |
1.84e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1000 IQEFEKVMTDHRiSLEELKKENQQIINQIQEshaaviQEKEQQLQELKLKVSD--------------LSDMRCKLE---- 1061
Cdd:COG5022 848 IQKFGRSLKAKK-RFSLLKKETIYLQSAQRV------ELAERQLQELKIDVKSisslklvnleleseIIELKKSLSsdli 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1062 VELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQD-NNENYQvglaelrtlMTIEKDQCISEl 1140
Cdd:COG5022 921 ENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEyEDLLKK---------STILVREGNKA- 990
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1141 isrhEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQsklnselsalEKQKDEKITQQEEKYEAIIQNLEKDKQKLV 1220
Cdd:COG5022 991 ----NSELKNFKKELAELSKQYGALQESTKQLKELPVEVA----------ELQSASKIISSESTELSILKPLQKLKGLLL 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1221 ISQEQDREQLIQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAidstREDSSSLVAELQEKLQEEKA 1300
Cdd:COG5022 1057 LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPA----NVLQFIVAQMIKLNLLQEIS 1132
|
....*.
gi 1622958758 1301 KFLEQL 1306
Cdd:COG5022 1133 KFLSQL 1138
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
1004-1108 |
1.97e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 42.27 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1004 EKVMTDHRISLEELKKEnQQIINQIQESHAAVIQEKEQQLQElklkvsDLSDMRCKLEVELALKEAETDEikiLLEESRA 1083
Cdd:pfam02841 203 EKAIEAERAKAEAAEAE-QELLREKQKEEEQMMEAQERSYQE------HVKQLIEKMEAEREQLLAEQER---MLEHKLQ 272
|
90 100
....*....|....*....|....*
gi 1622958758 1084 QQKETLKSLLEQETENLRTEISKLN 1108
Cdd:pfam02841 273 EQEELLKEGFKTEAESLQKEIQDLK 297
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
828-1371 |
2.47e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 42.90 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 828 KEQCDFSNSLKCTavEIRNIIEKVKCSLE--ITLKEKHQKE-LQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEE 904
Cdd:PTZ00440 672 KNEYEKLEFMKSD--NIDNIIKNLKKELQnlLSLKENIIKKqLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEV 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 905 VLQNKDNEfalvkheKEAVICLQNEKDQKLLEMENIM-----HSQNCEIKELKQSREIV-LEDLKKLHVENDEKLQLLRA 978
Cdd:PTZ00440 750 YKHQIINR-------KNEFILHLYENDKDLPDGKNTYeeflqYKDTILNKENKISNDINiLKENKKNNQDLLNSYNILIQ 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 979 ELQSLEQSHLKELEDTLQVRHIQEFEKVMTDHRISLEELKKENQQIINQIQESHAAV---------IQEKEQQLQELKLK 1049
Cdd:PTZ00440 823 KLEAHTEKNDEELKQLLQKFPTEDENLNLKELEKEFNENNQIVDNIIKDIENMNKNIniiktlniaINRSNSNKQLVEHL 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1050 VSDLSDMRCKLEVELalKEAETDEIkILLEEsraqqKETLKSLLEQETENLRTE-----ISKLNQKIQDNNENYQVGLAE 1124
Cdd:PTZ00440 903 LNNKIDLKNKLEQHM--KIINTDNI-IQKNE-----KLNLLNNLNKEKEKIEKQlsdtkINNLKMQIEKTLEYYDKSKEN 974
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1125 LRTlmtieKDQCISELISRHEEESSILKAELNKvtslhhqafeientlkeqiielqskLNSELSALEKQKDEKITQQEEK 1204
Cdd:PTZ00440 975 ING-----NDGTHLEKLDKEKDEWEHFKSEIDK-------------------------LNVNYNILNKKIDDLIKKQHDD 1024
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1205 YEAIIQNLEKDKQKLVISQEQDREQLIQKL---------NCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSP 1275
Cdd:PTZ00440 1025 IIELIDKLIKEKGKEIEEKVDQYISLLEKMktklssfhfNIDIKKYKNPKIKEEIKLLEEKVEALLKKIDENKNKLIEIK 1104
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1276 AIDSTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNfNTVLTREKMRKENIINDLSDKLK 1355
Cdd:PTZ00440 1105 NKSHEHVVNADKEKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDITLNEVN-EIEIEYERILIDHIVEQINNEAK 1183
|
570
....*....|....*.
gi 1622958758 1356 STMQQQERDKDLIESL 1371
Cdd:PTZ00440 1184 KSKTIMEEIESYKKDI 1199
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1164-1371 |
2.66e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1164 QAFEIENTLKEQIIELQSKLNSE-----LSALEKQkdekITQQEEKYEAIIQNLEKDKQK-LVISQEQDREQLIQKLNce 1237
Cdd:COG3206 149 LAAAVANALAEAYLEQNLELRREearkaLEFLEEQ----LPELRKELEEAEAALEEFRQKnGLVDLSEEAKLLLQQLS-- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1238 kdeAIQTALKEFILEREVVEKQL------LEKVKHLENQIAKSPAIDSTREDSSSLVAELQE-------------KLQEE 1298
Cdd:COG3206 223 ---ELESQLAEARAELAEAEARLaalraqLGSGPDALPELLQSPVIQQLRAQLAELEAELAElsarytpnhpdviALRAQ 299
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622958758 1299 KAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTnfntvLTREKMRKENIINDLSDKLkSTMQQQERDKDLIESL 1371
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQAREAS-----LQAQLAQLEARLAELPELE-AELRRLEREVEVAREL 366
|
|
| Ubl_TBK1_like |
cd12219 |
ubiquitin-like (Ubl) domain found in non-canonical Inhibitor of kappa B kinases IKKepsilon and ... |
3-76 |
2.72e-03 |
|
ubiquitin-like (Ubl) domain found in non-canonical Inhibitor of kappa B kinases IKKepsilon and TBK1, and similar proteins; IKKepsilon and TBK1 (TRAF family member-associated NF-kappaB activator-binding kinase 1) are non-canonical members of IKK family. They have been characterized as activators of nuclear factor-kappaB (NF-kappaB), but they are not essential for NF-kappaB activation. They play critical roles in antiviral response via phosphorylation and activation of transcription factors IRF3, IRF7, STAT1 and STAT3. They are also involved in the survival, tumorigenesis and development of various cancers. Both IKKepsilon and TBK1 contain an N-terminal protein kinase domain followed a ubiquitin-like (Ubl) domain. The Ubl domain acts as a protein-protein interaction domain, and has been implicated in regulating kinase activity, which modulates interactions in the interferon pathway.
Pssm-ID: 340518 Cd Length: 77 Bit Score: 37.98 E-value: 2.72e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622958758 3 LYVFLVNTGTTLTF---DTEltvqTVADLKHAIQSKYKIAIQHQVLVVNGGE-CMAADRRVCTYSAGTDTNPIFLFNK 76
Cdd:cd12219 4 IHVFSVSTCELLKIyldPTE----TLAEFQELIAEQTEIPAKNQLLLFEGQLlEEEVTLPVSDYPKTTEENPIILFNK 77
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
915-1315 |
2.73e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.44 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 915 LVKHEKEAVICLQNEKDQKLLEMENIMHSQNcEIKELKQSREIVLEDLKKLHVENDEK-----LQLLRAELQSLEQSHLK 989
Cdd:pfam09731 50 ALGEDPPLAPKPKTFRPLQPSVVSAVTGESK-EPKEEKKQVKIPRQSGVSSEVAEEEKeatkdAAEAKAQLPKSEQEKEK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 990 ELEDTLQvRHIQEFEKVMTDhrisLEELKKENQQIIN-QIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKL-EVELALK 1067
Cdd:pfam09731 129 ALEEVLK-EAISKAESATAV----AKEAKDDAIQAVKaHTDSLKEASDTAEISREKATDSALQKAEALAEKLkEVINLAK 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1068 EAETDEIKILLEESRAQQKETLKSL--LEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTiekdqcisELISRHE 1145
Cdd:pfam09731 204 QSEEEAAPPLLDAAPETPPKLPEHLdnVEEKVEKAQSLAKLVDQYKELVASERIVFQQELVSIFP--------DIIPVLK 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1146 EESSILKAELNKVtsLHHQAFEIeNTLKEQIIELQ-SKLNSELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQE 1224
Cdd:pfam09731 276 EDNLLSNDDLNSL--IAHAHREI-DQLSKKLAELKkREEKHIERALEKQKEELDKLAEELSARLEEVRAADEAQLRLEFE 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1225 QDREQLIQKLncekDEAIQTALKEfilEREVVEkqllekvKHLENQIaKSPAIDSTREdsssLVAELQEKLQEEKAKFLE 1304
Cdd:pfam09731 353 REREEIRESY----EEKLRTELER---QAEAHE-------EHLKDVL-VEQEIELQRE----FLQDIKEKVEEERAGRLL 413
|
410
....*....|.
gi 1622958758 1305 QLEEQEKRKNE 1315
Cdd:pfam09731 414 KLNELLANLKG 424
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
947-1478 |
3.30e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 947 EIKELKQSREIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQ---------VRHIQEFEKVMTDHRISLEEl 1017
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKaeearkaedARKAEEARKAEDAKRVEIAR- 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1018 KKENQQIINQIQESHAAVIQEKEQQLQELK--LKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQ 1095
Cdd:PTZ00121 1159 KAEDARKAEEARKAEDAKKAEAARKAEEVRkaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1096 ETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELISRHEEESS--ILKAE-LNKVTSLHHQAFEIENT- 1171
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeAKKAEeKKKADEAKKKAEEAKKAd 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1172 -LKEQIIELQSKLNSELSALE--KQKDEKITQQEEKYEAIIQNLEKDKQ--KLVISQEQDREQLIQKLNCEKDEAIQTAL 1246
Cdd:PTZ00121 1319 eAKKKAEEAKKKADAAKKKAEeaKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1247 K--EFILEREVVEKQLLEKVKHLEnqiAKSPAIDSTREDSSSLVAELQEKLQEEKAKfleqleEQEKRKNEEMQNVrtsl 1324
Cdd:PTZ00121 1399 KaeEDKKKADELKKAAAAKKKADE---AKKKAEEKKKADEAKKKAEEAKKADEAKKK------AEEAKKAEEAKKK---- 1465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1325 iAEQQTNFNTVLTREKMRKEniindlSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLeeevSKLRSSSFVPSPYVA 1404
Cdd:PTZ00121 1466 -AEEAKKADEAKKKAEEAKK------ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE----EAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622958758 1405 TAPELYGAcapelpgESDRSAVETADEGRVDSAMEtsmmsVQENIHMLSEEKQRIMLLERTLQLKEEENKRLNQ 1478
Cdd:PTZ00121 1535 KADEAKKA-------EEKKKADELKKAEELKKAEE-----KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
903-1088 |
4.22e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.16 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 903 EEVLQNKDNEFALVKHEKEavicLQNEKD-----QKLLEmeNIMHSQNCEIKELKQSREIVLEDLKKLHVEND---EKLQ 974
Cdd:smart00787 109 PDVKLLMDKQFQLVKTFAR----LEAKKMwyewrMKLLE--GLKEGLDENLEGLKEDYKLLMKELELLNSIKPklrDRKD 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 975 LLRAELQSLEQsHLKELEDTLQvrhiqefekvmTDHRISLEELKKENQQIINQIQEshaavIQEKEQQLQELKLKVSDLS 1054
Cdd:smart00787 183 ALEEELRQLKQ-LEDELEDCDP-----------TELDRAKEKLKKLLQEIMIKVKK-----LEELEEELQELESKIEDLT 245
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1622958758 1055 DMrcKLEVELALKEAET----------DEIKILLEESRAQQKET 1088
Cdd:smart00787 246 NK--KSELNTEIAEAEKkleqcrgftfKEIEKLKEQLKLLQSLT 287
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
1032-1311 |
4.56e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 41.20 E-value: 4.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1032 HAAVIQE----KEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKilLEESRAQQKETLKSLLEQETENLRTEISKL 1107
Cdd:pfam15742 49 HNSLLQEenikIKAELKQAQQKLLDSTKMCSSLTAEWKHCQQKIRELE--LEVLKQAQSIKSQNSLQEKLAQEKSRVADA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1108 NQKI----QDNNENYQVGLAELRTLMT-------IEKDQCISELISRHEEESSILKAELNKVTSLHHQA---FEIENTLK 1173
Cdd:pfam15742 127 EEKIlelqQKLEHAHKVCLTDTCILEKkqleeriKEASENEAKLKQQYQEEQQKRKLLDQNVNELQQQVrslQDKEAQLE 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1174 EQIIELQSKLNSELSALEKQKDEKITQQEEkyeaiIQNLEKDKQKLVISQ---EQDREQLIQKLNC---------EKDEA 1241
Cdd:pfam15742 207 MTNSQQQLRIQQQEAQLKQLENEKRKSDEH-----LKSNQELSEKLSSLQqekEALQEELQQVLKQldvhvrkynEKHHH 281
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622958758 1242 IQTALKEF--ILEREVveKQLLEKVKHLENQIAKSPAIDSTREDSSSLVAELQEKLQEEKAKFLEQLEEQEK 1311
Cdd:pfam15742 282 HKAKLRRAkdRLVHEV--EQRDERIKQLENEIGILQQQSEKEKAFQKQVTAQNEILLLEKRKLLEQLTEQEE 351
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
840-1108 |
4.65e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 840 TAVEIRNIIEKVKCSLEITLKEKHQKELQSLKnEYEGKLDALIKETEEnenKIKKLKGELVCLEEVLQNKDNEFALVKHE 919
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLE-EEVSRIEARLREIEQ---KLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 920 KEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSreivLEDLKKLHVENDEKLQLLRAELQSLE------QSHLKELED 993
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESR----LGDLKKERDELEAQLRELERKIEELEaqiekkRKRLSELKA 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 994 TL-----QVRHIQEFEKVM---TDHRISLEELKKENQQIINQIqESHAAVIQEKEQQLQELKLKVSDLSDMRCKLevela 1065
Cdd:TIGR02169 925 KLealeeELSEIEDPKGEDeeiPEEELSLEDVQAELQRVEEEI-RALEPVNMLAIQEYEEVLKRLDELKEKRAKL----- 998
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1622958758 1066 lkEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLN 1108
Cdd:TIGR02169 999 --EEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELS 1039
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
959-1290 |
5.48e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 959 LEDLKKLHVENDEKLQLLRAELQSlEQSHLKELEDTLQVRHiQEFEKVMTDHRISLEELKKENQQIINQIQEshaavIQE 1038
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQ-ARSELEQLEEELEELN-EQLQAAQAELAQAQEELESLQEEAEELQEE-----LEE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1039 KEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENY 1118
Cdd:COG4372 120 LQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1119 QVGLAELRTLMtiekdqcISELISRHEEESSILKAELNKVTSLHHQAFEIENTLKEQIIELQSKLNSELSALEKQKDEKI 1198
Cdd:COG4372 200 EELAEAEKLIE-------SLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKD 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1199 TQQEEKYEAIIQNLEKDKQKLVISQEQDREQL-IQKLNCEKDEAIQTALKEFILEREVVEKQLLEKVKHLENQIAKSPAI 1277
Cdd:COG4372 273 TEEEELEIAALELEALEEAALELKLLALLLNLaALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLD 352
|
330
....*....|...
gi 1622958758 1278 DSTREDSSSLVAE 1290
Cdd:COG4372 353 NDVLELLSKGAEA 365
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1093-1321 |
6.16e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1093 LEQETENLRTEISKLnQKIQDNNENYQVGLAELRTLmtiekDQCISEL-ISRHEEESSILKAELNKVTSLHHQAFEIENT 1171
Cdd:COG4913 240 AHEALEDAREQIELL-EPIRELAERYAAARERLAEL-----EYLRAALrLWFAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1172 LKEQIIELQSklnsELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKlvisQEQDREQLiqklncekdeaiQTALKEFIL 1251
Cdd:COG4913 314 LEARLDALRE----ELDELEAQIRGNGGDRLEQLEREIERLERELEE----RERRRARL------------EALLAALGL 373
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1252 EREVVEKQLLEKVKhlenqiakspAIDSTREDSSSLVAELQEKLQEEKAKfLEQLEEQEKRKNEEMQNVR 1321
Cdd:COG4913 374 PLPASAEEFAALRA----------EAAALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLE 432
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
857-1343 |
6.24e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 857 ITLKEKHQKELQSLKNEYEGKLDALIKETEENENKIKKLKGELVCLEEVLQNKDNefaLVKHEKEAVICLQNEKDQKLLE 936
Cdd:TIGR01612 2172 ITSAAKFSKDFFEFIEDISDSLNDDIDALQIKYNLNQTKKHMISILADATKDHNN---LIEKEKEATKIINNLTELFTID 2248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 937 MEN----IMHSQNCEI----KELKQSREIVLEDLKKLHVEN-------DEKLQLLRAELQSLEQSHLKELEDTLQvrHIQ 1001
Cdd:TIGR01612 2249 FNNadadILHNNKIQIiyfnSELHKSIESIKKLYKKINAFKllnishiNEKYFDISKEFDNIIQLQKHKLTENLN--DLK 2326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1002 EFEKVMTDH-RISLEELKKENQQIINQIQESHAAVIQeKEQQLQELKlKVSDlsdmrcklevelalKEAE-----TDEIK 1075
Cdd:TIGR01612 2327 EIDQYISDKkNIFLHALNENTNFNFNALKEIYDDIIN-RENKADEIE-NINN--------------KENEnimqyIDTIT 2390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1076 ILLEesraQQKETLKSLLEQETENlrteiSKLNQKIQDNNENYQVGLAE-LRTlmTIEKDQCISELISRHEEE------- 1147
Cdd:TIGR01612 2391 KLTE----KIQDILIFVTTYENDN-----NIIKQHIQDNDENDVSKIKDnLKK--TIQSFQEILNKIDEIKAQfyggnni 2459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1148 SSIL---KAELNKVTSLHHQAFEIENTLkeqiIELQSKLNSELSALEKQKDEKITQQ--------EEKYEAIIQNLEKDk 1216
Cdd:TIGR01612 2460 NNIIitiSQNANDVKNHFSKDLTIENEL----IQIQKRLEDIKNAAHEIRSEQITKYtnaihnhiEEQFKKIENNSNKD- 2534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1217 QKLVISQEQDREQLIQKLNCE---KDEAIQTALKEF--ILEREVVEKQLLEKVKHLENQIAKSPAIDSTrEDSSSLVAEL 1291
Cdd:TIGR01612 2535 EVYKINEIDNIIEKIINYNKEpevKLHAIIDNKNEFasIIPDIKNLIALIESEYGNNNNISYKVAIKHE-EDANNIILDL 2613
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1622958758 1292 QeklqeEKAKFLEQLEEQEKRKNEEMQNVRTSLIAeqQTNFNTVLTREKMRK 1343
Cdd:TIGR01612 2614 N-----KSQNILNHLIHKNKKIIEDLGNIKHGIHN--NNNLHTINKHEEISK 2658
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
1163-1329 |
6.28e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 40.35 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1163 HQAFEIE-------NTLKEQIIELQSKLnseLSALEKQKDEKITQQEE----KYEAIIQNLEKDKQKlVISQE------- 1224
Cdd:pfam02841 74 HRDCEKEaiavfmkRSFKDENQEFQKEL---VELLEAKKDDFLKQNEEasskYCSALLQDLSEPLEE-KISQGtfskpgg 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1225 -----QDREQLIQKLNCEKDEAIQ--TALKEFILEREVVEKQLLEKVKHLEnqiAKSPAIDSTREDSSSLVAELQekLQE 1297
Cdd:pfam02841 150 yklflEERDKLEAKYNQVPRKGVKaeEVLQEFLQSKEAVEEAILQTDQALT---AKEKAIEAERAKAEAAEAEQE--LLR 224
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1622958758 1298 EKAKFLEQLEEQEKRKNEE--------MQNVRTSLIAEQQ 1329
Cdd:pfam02841 225 EKQKEEEQMMEAQERSYQEhvkqliekMEAEREQLLAEQE 264
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1017-1322 |
6.29e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1017 LKKENQQIINQIQESHAAVIQEKEQQLQELKLkvSDLSDMRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLL--- 1093
Cdd:PRK05771 14 LKSYKDEVLEALHELGVVHIEDLKEELSNERL--RKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIkdv 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1094 EQETENLRTEISKLNQKIqdnnenyqvglaelrtlmtiekdqciSELisrhEEESSILKAELNKVTSLHhqAFEIEntlk 1173
Cdd:PRK05771 92 EEELEKIEKEIKELEEEI--------------------------SEL----ENEIKELEQEIERLEPWG--NFDLD---- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1174 eqIIELQSK--LNSELSALEKQKDEKITQQEEKYEAIIqnLEKDKQKLVI------SQEQDREQLIQKLNcekdeaiqta 1245
Cdd:PRK05771 136 --LSLLLGFkyVSVFVGTVPEDKLEELKLESDVENVEY--ISTDKGYVYVvvvvlkELSDEVEEELKKLG---------- 201
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622958758 1246 LKEFILEREVVEKQLLEKVKHLENQIAKspAIDSTREDssslVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRT 1322
Cdd:PRK05771 202 FERLELEEEGTPSELIREIKEELEEIEK--ERESLLEE----LKELAKKYLEELLALYEYLEIELERAEALSKFLKT 272
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
947-1128 |
6.48e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 947 EIKELKQSREIVLEDLKKLHVENDE-KLQLLRAELQSLEQSH--LKELEDTLQVRhiqefekvmtdhrisLEELKKENQQ 1023
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQrRLELLEAELEELRAELarLEAELERLEAR---------------LDALREELDE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1024 IINQIQESHAAVIQEKEQQLQELKLKVSDLSDMRCKLEVELA-LKEAETDEIKILLEesRAQQKETLKSLLEQETENLRT 1102
Cdd:COG4913 328 LEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAaLGLPLPASAEEFAA--LRAEAAALLEALEEELEALEE 405
|
170 180
....*....|....*....|....*.
gi 1622958758 1103 EISKLNQKIQDNNENYQVGLAELRTL 1128
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASL 431
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1175-1324 |
6.51e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 6.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1175 QIIELQSKLNSELSALEKQKDEKITQQEEKYEAI------IQNLEKDKQKLVISQEQDREQLIQKLNcEKD-EAIQTALK 1247
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELedlekeIKRLELEIEEVEARIKKYEEQLGNVRN-NKEyEALQKEIE 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622958758 1248 EFILEREVVEKQLLEKVKHLEnqiAKSPAIDSTREDSSSLVAELQEKlQEEKAKFLEQLEEQEKRKNEEMQNVRTSL 1324
Cdd:COG1579 100 SLKRRISDLEDEILELMERIE---ELEEELAELEAELAELEAELEEK-KAELDEELAELEAELEELEAEREELAAKI 172
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1009-1356 |
7.32e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.19 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1009 DHRISLEELKKENQQIINQIQESHAAV-----IQEKEQQLQELKlkvsdlsdmRCKLEVELALKE-AETDEIKILLEESR 1082
Cdd:PTZ00108 901 DYKEFLESETLKEKDVIVDYRDYSTANtvhftVKLNDGVLEQWE---------EEGIEKVFKLKStISTTNMVLFDENGK 971
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1083 AQQKETLKSLLEqetenlrteisklnqkiqdnnENYQVGLAelrtLMTIEKDQCISELisrhEEESSILKaelNKVTSLH 1162
Cdd:PTZ00108 972 IKKYSDALDILK---------------------EFYLVRLD----LYKKRKEYLLGKL----ERELARLS---NKVRFIK 1019
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1163 H---QAFEIENTLKEQIIELQSKLN-SELSALEKQKDEKITQQEEKYEAIIQNLEKDKQKLVISQEQDREQLiqklncek 1238
Cdd:PTZ00108 1020 HvinGELVITNAKKKDLVKELKKLGyVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYL-------- 1091
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1239 deaiqTALKEFILEREVVEK---QLLEKVKHLENQIAKSPaIDSTREDSSSLVAELQEKLQEEKAKFLE--QLEEQEKRK 1313
Cdd:PTZ00108 1092 -----LSMPIWSLTKEKVEKlnaELEKKEKELEKLKNTTP-KDMWLEDLDKFEEALEEQEEVEEKEIAKeqRLKSKTKGK 1165
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1622958758 1314 NEEMQNVRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKS 1356
Cdd:PTZ00108 1166 ASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
|
|
| COG4192 |
COG4192 |
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ... |
970-1214 |
8.05e-03 |
|
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];
Pssm-ID: 443346 [Multi-domain] Cd Length: 640 Bit Score: 40.83 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 970 DEKLQLLRAELQSLEQSH-----LKELEDTLQvRHIQEFEKVMTdHRISLEElkkENQQIINQIQESHAAVIQEKEQQLQ 1044
Cdd:COG4192 91 NTQLADIEELLAELEQLTqdagdLRAAVADLR-NLLQQLDSLLT-QRIALRR---RLQELLEQINWLHQDFNSELTPLLQ 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1045 E--------LKLKVSDLSDMRCKLEVELALK-EAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIqdnn 1115
Cdd:COG4192 166 EaswqqtrlLDSVETTESLRNLQNELQLLLRlLAIENQIVSLLREVAAARDQADVDNLFDRLQYLKDELDRNLQAL---- 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1116 ENYQVglaelrtlmTIEKDQCISELISRHEEESSIlkaelnkvtslhHQAFEIENTLKEQIIELQSKLNSELSALEKQKD 1195
Cdd:COG4192 242 KNYPS---------TITLRQLIDELLAIGSGEGGL------------PSLRRDELAAQATLEALAEENNSILEQLRTQIS 300
|
250
....*....|....*....
gi 1622958758 1196 EKITQQEEKYEAIIQNLEK 1214
Cdd:COG4192 301 GLVGNSREQLVALNQETAQ 319
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
949-1316 |
8.72e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 949 KELKQSREIVLEDLKKLHVENDEKLQLLRAELQ---SLEQSHLKELEDTLQVRHIQEFEKVMTDHRIslEELKKENQQII 1025
Cdd:PLN02939 49 KRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRtvmELPQKSTSSDDDHNRASMQRDEAIAAIDNEQ--QTNSKDGEQLS 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1026 NQIQESHAAVIQEKEQQLQEL-KLKVSDLSDmrckLEVELALKEAETDEIKIL---LEESRAQQKETLK-----SLLEQE 1096
Cdd:PLN02939 127 DFQLEDLVGMIQNAEKNILLLnQARLQALED----LEKILTEKEALQGKINILemrLSETDARIKLAAQekihvEILEEQ 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1097 TENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDqciselisrheeESSILKAELNKVTSLHHQAFEIENT---LK 1173
Cdd:PLN02939 203 LEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKD------------DIQFLKAELIEVAETEERVFKLEKErslLD 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1174 EQIIELQSKLNSELSALEKQKDEKITQQEEKYEAIIQNLEK-----DKQKLVISQEQD------------REQLIQKLNC 1236
Cdd:PLN02939 271 ASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRatnqvEKAALVLDQNQDlrdkvdkleaslKEANVSKFSS 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622958758 1237 EKDEAIQtalkefilerevvekqllEKVKHLENQIAKSPA-IDSTREDSSSLVAELQEKLQEEKakfleqlEEQEKRKNE 1315
Cdd:PLN02939 351 YKVELLQ------------------QKLKLLEERLQASDHeIHSYIQLYQESIKEFQDTLSKLK-------EESKKRSLE 405
|
.
gi 1622958758 1316 E 1316
Cdd:PLN02939 406 H 406
|
|
| |
