|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1-1110 |
0e+00 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 1922.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 1 MESKACESNNEDILSSSGVTSNEGSSSPFFVSSIRGTIIENTSSAGTLTQVPFFPKYEVELDSPRKIIQYPGKEHFERVL 80
Cdd:pfam15921 1 MEPKPCESNNEDLLSSSGITSNRGSSSPFFVSSIRGTIIENTSSTGTFTQIPIFPKYEVELDSPRKIIAYPGKEHIERVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 161 KEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTLHFRSLGSAISKILRELDTEISFLKGRI 240
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 241 FPVEDQLEALKSESQNKMELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLS 320
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 401 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 480
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 481 VEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEK 560
Cdd:pfam15921 481 VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
Cdd:pfam15921 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 641 GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 721 SDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 800
Cdd:pfam15921 721 SDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQER 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 801 RLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQGPGYTSNSSLKPRLLQPASVTRSHSNVPSSQ 880
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQ 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 881 STASFLSHHSTKANTLKEDPTRDLKQLLQELRSVINEEPAVSLSKTEEDGRT-SLGALyvavEDRVRDCITESSLRSDMC 959
Cdd:pfam15921 881 STASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDKGRApSLGAL----DDRVRDCIIESSLRSDIC 956
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 960 HRSNNSLRdsTEGSKSSETLSREPVTLHAGDMEDPSGCFTFASAASPSVKNSASRSFNSSPKKSPVHSLLTSSVEGSIGS 1039
Cdd:pfam15921 957 HSSSNSLQ--TEGSKSSETCSREPVLLHAGELEDPSSCFTFPSTASPSVKNSASRSFHSSPKKSPVHSLLTSSAEGSIGS 1034
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622940007 1040 ASQYRSAKPIHSSDSVK-------ETTGKTCRKLQNRLESLQTLVEDLQMKNQAMSSMIRNQEKRIQKVKDQEKMLLK 1110
Cdd:pfam15921 1035 SSQYRSAKTIHSPDSVKdsqslpiETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK 1112
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
251-838 |
6.58e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.61 E-value: 6.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 251 KSESQNKMELLlQQHQDRIEQLISEHEVEITGLTEKASSARsQANSIQSQMEIIQEQARnqnsmyMRQLSDLESTVSQLR 330
Cdd:COG1196 174 KEEAERKLEAT-EENLERLEDILGELERQLEPLERQAEKAE-RYRELKEELKELEAELL------LLKLRELEAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 331 SELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGN 410
Cdd:COG1196 246 AELEEL----EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 411 SITIDHLRRELDDRNMEVQRLEALLKALKSECQgqmERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMT 490
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELE---EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 491 LESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQ 570
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 571 IENMTQLVGQHGRTAGAMQVEKAQLE---------KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKV-KLVNA 640
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEgflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 641 GSERLRAVKDIKQERDQLLNEVKTSRNELN-----------------SLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKS 703
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLPLDKIRARAALaaalargaigaavdlvaSDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 704 AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVAT 783
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1622940007 784 EKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLK 838
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-814 |
3.29e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.42 E-value: 3.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMAD----IRRRESQSQEDLrNQLQNTVH 152
Cdd:TIGR02168 199 ERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEeleeLTAELQELEEKL-EELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 153 ELEAAKCLKEDMLKDSNTQIEQLRKMmlshEGVLQEIRSILVDFEEASGKKIYEHDSMSTLhfrslgsaISKILRELDTE 232
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQ----KQILRERLANLERQLEELEAQLEELESKLDE--------LAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 233 ISFLKGRIFPVEDQLEALKSESQNkMELLLQQHQDRIEQLISEheveITGLTEKASSARSQANSIQSQMEIIQEQARNQN 312
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSK----VAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 313 SmymRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL---------- 382
Cdd:TIGR02168 421 Q---EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarldslerl 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 383 ---LADLHKREKELSLEKEQNK----RLWDR---DTGNSITIDHLRRELDDrNMEVQRLEALLKALKSECQGQMERQM-- 450
Cdd:TIGR02168 498 qenLEGFSEGVKALLKNQSGLSgilgVLSELisvDEGYEAAIEAALGGRLQ-AVVVENLNAAKKAIAFLKQNELGRVTfl 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 451 -------AAIQGKN----ESLEKVSSLTAQLESTKEMLRKVVEEL-------------TAKKMTLESSERTIS------- 499
Cdd:TIGR02168 577 pldsikgTEIQGNDreilKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTldgdlvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 500 ----------DLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIEILRQ 569
Cdd:TIGR02168 657 pggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE---LEELEEELEQLRKELEELSRQISALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 570 QIENMTQlvgqhgrtagamqvEKAQLEKEINDRRMELKELkilkdkkDAKIRELEARVSDLELEKVklvnagsERLRAVK 649
Cdd:TIGR02168 734 DLARLEA--------------EVEQLEERIAQLSKELTEL-------EAEIEELEERLEEAEEELA-------EAEAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 650 DIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghamkva 729
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE---------- 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 730 mGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNM 809
Cdd:TIGR02168 856 -SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
....*
gi 1622940007 810 EVALD 814
Cdd:TIGR02168 935 EVRID 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
330-675 |
8.01e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 8.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 330 RSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG 409
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 410 NSITIDHLRRELDDRNMEVQRLEALLKALKSEcQGQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKK 488
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREaLDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 489 MTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGD----HLRNVQTECEALKLQMTEKDKVI 564
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-RMELKELKILKDKKDAKIRELEARVSDLELEKVKL--VNAG 641
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLA 990
|
330 340 350
....*....|....*....|....*....|....*
gi 1622940007 642 S-ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEE 675
Cdd:TIGR02168 991 AiEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
219-840 |
5.30e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.11 E-value: 5.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 219 GSAISKILRELDTEISFLKGRIFPVEDQLEALKSESQNkmellLQQHQDRIEQLISEHEVEITGLTEkassarSQANSIQ 298
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE-----LEKRLEEIEQLLEELNKKIKDLGE------EEQLRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 299 SQMEIIQ---EQARNQNSMYMRQLSDLESTVSQLRSELREakrmYEDKIEELEKqlvlansELTEARTERDQFSQESGNL 375
Cdd:TIGR02169 294 EKIGELEaeiASLERSIAEKERELEDAEERLAKLEAEIDK----LLAEIEELER-------EIEEERKRRDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 376 DDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQG 455
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLK------ 529
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLkasiqg 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 530 ----LQELQHLKNE---------GDHLRNVQTECEAL----------------------KLQMTEKDK-------VIEIL 567
Cdd:TIGR02169 523 vhgtVAQLGSVGERyataievaaGNRLNNVVVEDDAVakeaiellkrrkagratflplnKMRDERRDLsilsedgVIGFA 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 568 ------RQQIEN--------------------------MTQLVGQHGRTAGAM----------QVEKAQLEKEINDRRME 605
Cdd:TIGR02169 603 vdlvefDPKYEPafkyvfgdtlvvedieaarrlmgkyrMVTLEGELFEKSGAMtggsraprggILFSRSEPAELQRLRER 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 606 LKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKR---N 682
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 683 FRNKSEEMEMTTNKLKMQLKS-----AQSELEQTRNTLKSMEgsdghamKVAMGMQKQITAKRGQIDALQSKIQFLEEAM 757
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLE-------EEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 758 TNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRL 837
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
...
gi 1622940007 838 KLQ 840
Cdd:TIGR02169 916 RKR 918
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
109-717 |
5.79e-15 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 80.08 E-value: 5.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 109 RQSVID--LQTKLQEMQMER--DAMADIRRRESQSQEDLRnQLQNTVHELEAAKCLK-----EDMLKDSNTQIEQLRKMM 179
Cdd:PRK02224 151 RQDMIDdlLQLGKLEEYRERasDARLGVERVLSDQRGSLD-QLKAQIEEKEEKDLHErlnglESELAELDEEIERYEEQR 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 180 LSHEGVLQEIRSILVDFEEasgkKIYEHDSMSTlHFRSLGSAISKILRELDT---EISFLKGRIFPVEDQLEALKSE--- 253
Cdd:PRK02224 230 EQARETRDEADEVLEEHEE----RREELETLEA-EIEDLRETIAETEREREElaeEVRDLRERLEELEEERDDLLAEagl 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 254 ---SQNKMELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQArnqnsmymrqlSDLESTVS 327
Cdd:PRK02224 305 ddaDAEAVEARREELEDRDEELrdrLEECRVAAQAHNEEAESLREDADDLEERAEELREEA-----------AELESELE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 328 QLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDqfsqESGNLDDQLQKLLADLHKREKELSLE-------KEQN 400
Cdd:PRK02224 374 EAREAVEDR----REEIEELEEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATlrtarerVEEA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 401 KRLWDR----DTGNSITIDHLRRELDDRNMEVQRLEALLKALKSEcqgqmerqMAAIQGKNESLEKVSSLTAQLESTKEM 476
Cdd:PRK02224 446 EALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAELEDLEEE--------VEEVEERLERAEDLVEAEDRIERLEER 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 477 LRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE-------LQHLKNEGDHLRNVQTE 549
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaelnskLAELKERIESLERIRTL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 550 CEALklqmTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMElkELKILKDKKDAKIRELEARVSD 629
Cdd:PRK02224 598 LAAI----ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE--EAREDKERAEEYLEQVEEKLDE 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 630 LElekvklvnagserlravkdikQERDQLLNEVKTSRNELNSLSEeyevlkrnFRNKSEEMEMTTNKLKmQLKSAQSELE 709
Cdd:PRK02224 672 LR---------------------EERDDLQAEIGAVENELEELEE--------LRERREALENRVEALE-ALYDEAEELE 721
|
....*...
gi 1622940007 710 QTRNTLKS 717
Cdd:PRK02224 722 SMYGDLRA 729
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-849 |
1.45e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 251 KSESQNKMELLlQQHQDRIEQLISEHEVEITGLTEKASSA------RSQANSIQSQMEIIQEQARNQNsmyMRQLSDLES 324
Cdd:TIGR02168 174 RKETERKLERT-RENLDRLEDILNELERQLKSLERQAEKAerykelKAELRELELALLVLRLEELREE---LEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 325 TVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL---LADLHKREKELS--LEKEQ 399
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLANLERQLEELEaqLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 400 NKRLWDRDTGNSIT--IDHLRRELDDRNMEVQRLEALLKALKS---ECQGQMERQMAAIQGKNESLE----KVSSLTAQL 470
Cdd:TIGR02168 330 SKLDELAEELAELEekLEELKEELESLEAELEELEAELEELESrleELEEQLETLRSKVAQLELQIAslnnEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 471 ESTKEMLRKVVEELTAKKMTLESSE-----RTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN 545
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 546 vqtECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK-------AQLEKEINDRRME-----------LK 607
Cdd:TIGR02168 490 ---RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaieAALGGRLQAVVVEnlnaakkaiafLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 608 ELKI-------LKDKKDAKIRELEARV-----------SDLELEKVKLVNAGSERLRAVKdIKQERDQLLNEVKTSRNEL 669
Cdd:TIGR02168 567 QNELgrvtflpLDSIKGTEIQGNDREIlkniegflgvaKDLVKFDPKLRKALSYLLGGVL-VVDDLDNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 670 NSLSEEYEVLKRNF----------------RNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQ 733
Cdd:TIGR02168 646 RIVTLDGDLVRPGGvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 734 KQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVAL 813
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
650 660 670
....*....|....*....|....*....|....*.
gi 1622940007 814 DKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQ 849
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
226-810 |
6.84e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 76.21 E-value: 6.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 226 LRELDTEISFLKGRIFPVEDQLEALKSESQNkmellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQmeiiQ 305
Cdd:TIGR04523 98 INKLNSDLSKINSEIKNDKEQKNKLEVELNK-----LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQ----K 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 306 EQARNQNSMYMRQLSDLESTVSQLRSELReAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNIDKIKNKLL-KLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKALKSECQgqmerqmaaiQGKNESL-EKVS 464
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE----------QDWNKELkSELK 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
Cdd:TIGR04523 318 NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 545 NVQTECEALKLQMTEKDKVIE----ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIND---RRMELK--------EL 609
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQqekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNldnTRESLEtqlkvlsrSI 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 610 KILKDKKDAKIRELEARVSDLElekvKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFrnKSEE 689
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELK----KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL--NKDD 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 690 MEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKekhflke 769
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK------- 624
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1622940007 770 EKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 810
Cdd:TIGR04523 625 ENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEII 665
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
445-800 |
4.81e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 4.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 445 QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE-ELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLR 523
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 524 SRVDLKLQELQHLKNE-----GDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMtqlvgqhgrtagamQVEKAQLEKE 598
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKikdlgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA--------------EERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 599 IndrrmelkelkilkDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEV 678
Cdd:TIGR02169 331 I--------------DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 679 LKRnfrnKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamKVAmGMQKQITAKRGQIDALQSKIQFLEEAMT 758
Cdd:TIGR02169 397 LKR----EINELKRELDRLQEELQRLSEELADLNAAIAGIEA------KIN-ELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1622940007 759 NANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 800
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
335-841 |
1.90e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 65.13 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 335 EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHkrEKELSLEKEQNKRLWDRDTGNSIti 414
Cdd:pfam05483 169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDH--EKIQHLEEEYKKEINDKEKQVSL-- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 415 dhLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
Cdd:pfam05483 245 --LLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIA 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 495 ERTISDLT----TSLQEKERAIEATNAEITKLRSRV----DLKLQELQHLKNEGDHLR---------------------N 545
Cdd:pfam05483 323 TKTICQLTeekeAQMEELNKAKAAHSFVVTEFEATTcsleELLRTEQQRLEKNEDQLKiitmelqkksseleemtkfknN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 546 VQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkaqlEKEINDRRM--------------ELKELKI 611
Cdd:pfam05483 403 KEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAR----EKEIHDLEIqltaiktseehylkEVEDLKT 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 612 LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVK-------DIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFR 684
Cdd:pfam05483 479 ELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKkhqediiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFI 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 685 NKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEK 764
Cdd:pfam05483 559 QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK-------CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 765 HFLKEEKSKLSQELSTVATEKNKMAG----ELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
Cdd:pfam05483 632 NAYEIKVNKLELELASAKQKFEEIIDnyqkEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEK 711
|
.
gi 1622940007 841 H 841
Cdd:pfam05483 712 H 712
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
243-842 |
2.94e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 2.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 243 VEDQLEALKSE---SQNKMELLLQQHQDRIEQL------ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNS 313
Cdd:TIGR04523 38 LEKKLKTIKNElknKEKELKNLDKNLNKDEEKInnsnnkIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 314 mymrQLSDLESTVSQLRSELREAKRMYEDKIEELEKQlvlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL 393
Cdd:TIGR04523 118 ----QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKK----EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 394 SLEKEQNKRLwdrdtgnsitiDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEST 473
Cdd:TIGR04523 190 DKIKNKLLKL-----------ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 474 KEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEitklrsrvdlKLQELqhLKNEGDHLRNVQTECEAL 553
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ----------KEQDW--NKELKSELKNQEKKLEEI 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 554 KLQMTEKDKVIEILRQQIENMTqlvgqhgRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELE 633
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLK-------KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 634 kvklvnagserlraVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKR-NFRNKSE--EMEMTTNKLKMQLKSAQSELEQ 710
Cdd:TIGR04523 400 --------------IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKEtIIKNNSEikDLTNQDSVKELIIKNLDNTRES 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 711 TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALqskiqfleeamtnaNKEKHFLKEEKSKLSQELSTVATEKNKMAG 790
Cdd:TIGR04523 466 LETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL--------------NEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1622940007 791 ELEVLRSQERRLKEKVTNMEVALDKASLqfaecQDIIQRQEQESVRLKLQHT 842
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKENL-----EKEIDEKNKEIEELKQTQK 578
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
88-813 |
4.95e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 4.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 88 KDLQRRLNE--------SNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMA-----------DIRRRESQSQEDLRNQLQ 148
Cdd:TIGR02169 214 QALLKEKREyegyellkEKEALERQKEAIERQLASLEEELEKLTEEISELEkrleeieqlleELNKKIKDLGEEEQLRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 149 NTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTlHFRSLGSAISKILRE 228
Cdd:TIGR02169 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE-EYAELKEELEDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 229 L---DTEISFLKGRIFPVEDQLEALKSESQNkmellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQ 305
Cdd:TIGR02169 373 LeevDKEFAETRDELKDYREKLEKLKREINE-----LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 306 EQARNQNsmymRQLSDLESTVSQLRSELREAKrmyeDKIEELEKQLVLANSELTEARTERDQFSQESGN-------LDDQ 378
Cdd:TIGR02169 448 LEIKKQE----WKLEQLAADLSKYEQELYDLK----EEYDRVEKELSKLQRELAEAEAQARASEERVRGgraveevLKAS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 379 LQ---KLLADLHKREKE--LSLEKEQNKRL----WDRDTGNSITIDHLRRELDDRNM-----EVQRLEALLKALKS---- 440
Cdd:TIGR02169 520 IQgvhGTVAQLGSVGERyaTAIEVAAGNRLnnvvVEDDAVAKEAIELLKRRKAGRATflplnKMRDERRDLSILSEdgvi 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 441 -------ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTAkkMTLES-SERTISDLTTSLQEKER 510
Cdd:TIGR02169 600 gfavdlvEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRmvTLEGELFEKSGA--MTGGSrAPRGGILFSRSEPAELQ 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 511 AIeatNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEAlklQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQV 590
Cdd:TIGR02169 678 RL---RERLEGLKRELSSLQSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 591 EKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLEL-EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL 669
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 670 NSLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHamkvamgMQKQITAKRGQIDALQSK 749
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD-------LKKERDELEAQLRELERK 904
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622940007 750 IQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSqERRLKEKVTNMEVAL 813
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEI 967
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
226-719 |
5.04e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 5.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 226 LRELDTEISFLKGRIFPVEDQLEALKSEsqnkmELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQ 305
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAE-----EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 306 EQARNQNSMYMRQLSDLESTVSQLrSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAEL-AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 386 LHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSS 465
Cdd:COG1196 416 LERLEEELEELEEALAEL-------EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 466 LTAQLESTKEMLRKVVEELTAKKMTLESSE-----RTISDLTTSLQEKERAIE--------------------------- 513
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGlrglaGAVAVLIGVEAAYEAALEaalaaalqnivveddevaaaaieylka 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 514 -----ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ-----MTEKDKVIEILRQQIENMTQLVGQHGR 583
Cdd:COG1196 569 akagrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYvlgdtLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 584 TAGAMQVEKAQLEKEINDRRMELKELKILKdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVK 663
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAE----AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622940007 664 TSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSME 719
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
202-676 |
6.83e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 6.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 202 KKIYEHDSMST--LHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLEALKSESQNKMELL------LQQHQDRIEQL- 272
Cdd:TIGR04523 208 KKIQKNKSLESqiSELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLsekqkeLEQNNKKIKELe 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 273 --ISEHEVEITGLTEKASS-----ARSQANSIQSQMEIIQEQARNQN---SMYMRQLSDLESTVSQLRSELREAKRMYED 342
Cdd:TIGR04523 288 kqLNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKELTNSESENSEKQRELEE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 343 KIEELEK----------QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN-------KRLWD 405
Cdd:TIGR04523 368 KQNEIEKlkkenqsykqEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIiknnseiKDLTN 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 406 RDTGNSITIDHLRRELDDRNMEVQRLEALLKALKSEcqgqMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELT 485
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN----LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 486 AKKMTLESserTISDLTTSLQEKERAIEATNAEITK--LRSRVDLKLQELQHLKNEGDHLRNVQTEceaLKLQMTEKDKV 563
Cdd:TIGR04523 524 EKIEKLES---EKKEKESKISDLEDELNKDDFELKKenLEKEIDEKNKEIEELKQTQKSLKKKQEE---KQELIDQKEKE 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 564 IEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE 643
Cdd:TIGR04523 598 KKDLIKEIEEKEKKI--------------SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
490 500 510
....*....|....*....|....*....|...
gi 1622940007 644 RLRAVKDIKQERDQLLNEVKTSRNELNSLSEEY 676
Cdd:TIGR04523 664 IIKKIKESKTKIDDIIELMKDWLKELSLHYKKY 696
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-544 |
5.70e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 5.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 266 QDRIEQLisehEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMymRQLSDLESTVSQLRSELREAKRMYE---- 341
Cdd:COG4913 609 RAKLAAL----EAELAELEEELAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELErlda 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 342 --DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLaDLHKREKELSLEKEQNKRLWDRDTGNsitiDHLRR 419
Cdd:COG4913 683 ssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-EELDELQDRLEAAEDLARLELRALLE----ERFAA 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 420 ELDDRNME--VQRLEALLKALKSE---CQGQMERQMAAIqgKNESLEKVSSLTAQLESTKE---MLRKVVE----ELTAK 487
Cdd:COG4913 758 ALGDAVERelRENLEERIDALRARlnrAEEELERAMRAF--NREWPAETADLDADLESLPEylaLLDRLEEdglpEYEER 835
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 488 --KMTLESSERTISDLTTSLQEKERAIeatnaeitklRSRVDLKLQELQHLK-NEGDHLR 544
Cdd:COG4913 836 fkELLNENSIEFVADLLSKLRRAIREI----------KERIDPLNDSLKRIPfGPGRYLR 885
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
467-690 |
6.00e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 6.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV 546
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 547 QTECEAL------KLQMTEKDKVIEILRQQiENMTQLVgqhgRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKI 620
Cdd:COG4942 99 LEAQKEElaellrALYRLGRQPPLALLLSP-EDFLDAV----RRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 621 RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEM 690
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
108-679 |
6.72e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 6.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEaakclkedmlkdsntqieqlrkmmlshegvlq 187
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG-------------------------------- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 188 eirsilvdfeeasgkkiyehdsmstlhfrslgsaiskiLRELDTEIsflkgrifpVEDQLEALKSEsqnkmelllqqhQD 267
Cdd:PRK02224 304 --------------------------------------LDDADAEA---------VEARREELEDR------------DE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 268 RIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQArnqnsmymrqlSDLESTVSQLRSELREAkrmyEDKIEEL 347
Cdd:PRK02224 325 ELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA-----------AELESELEEAREAVEDR----REEIEEL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 348 EKQLVLANSELTEARTERDqfsqESGNLDDQLQKLLADLHKREKELSLE-------KEQNKRLWDR----DTGNSITIDH 416
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATlrtarerVEEAEALLEAgkcpECGQPVEGSP 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 417 LRRELDDRNMEVQRLEALLKALKSEcqgqmerqMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSER 496
Cdd:PRK02224 466 HVETIEEDRERVEELEAELEDLEEE--------VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 497 TISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE-------LQHLKNEGDHLRNVQTECEALklqmTEKDKVIEILRQ 569
Cdd:PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaelnskLAELKERIESLERIRTLLAAI----ADAEDEIERLRE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 570 QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRME-----LKELKILKDKKDAKIRELEARVSDLeLEKVKLVNAGSER 644
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFDEARIEearedKERAEEYLEQVEEKLDELREERDDL-QAEIGAVENELEE 692
|
570 580 590
....*....|....*....|....*....|....*
gi 1622940007 645 LRAVKDikqERDQLLNEVKTsrneLNSLSEEYEVL 679
Cdd:PRK02224 693 LEELRE---RREALENRVEA----LEALYDEAEEL 720
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
80-488 |
1.83e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 80 LEEYSHQVKDLQRRLN----ESNELhEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE 155
Cdd:TIGR02169 676 LQRLRERLEGLKRELSslqsELRRI-ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 156 AAKclkeDMLKDSNTQIEQLrkmmlshEGVLQEIRSILVDfeeasgkkIYEHDSMSTLhfrslgSAISKILRELDTEISF 235
Cdd:TIGR02169 755 NVK----SELKELEARIEEL-------EEDLHKLEEALND--------LEARLSHSRI------PEIQAELSKLEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 236 LKGRIFPVEDQLealksesqNKMELLLQQHQDRIEQLisehEVEITGLTEKASSARSQANSIQSQMEIIQEQARNqnsmy 315
Cdd:TIGR02169 810 IEARLREIEQKL--------NRLTLEKEYLEKEIQEL----QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE----- 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 316 mrqlsdLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSL 395
Cdd:TIGR02169 873 ------LEAALRDLESRLGDLKK----ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 396 EKEQNKRLWDrdtgnsitidhlrreLDDRNMEVQRLEALLKALKsecqgqmERQMAAIQGKNESLEKVSSLTAQ---LES 472
Cdd:TIGR02169 943 DEEIPEEELS---------------LEDVQAELQRVEEEIRALE-------PVNMLAIQEYEEVLKRLDELKEKrakLEE 1000
|
410
....*....|....*.
gi 1622940007 473 TKEMLRKVVEELTAKK 488
Cdd:TIGR02169 1001 ERKAILERIEEYEKKK 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
226-574 |
2.76e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 226 LRELDTEISFLKGRIFPVEDQLEALKSESQNKMELL--LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEI 303
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELeqLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 304 IQEQARNQNSMymrqlsdlestvsqlRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
Cdd:TIGR02168 759 LEAEIEELEER---------------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 384 ADLHKREKELSLEKEQNKRlwdrdtgnsitidhLRRELDDRNMEVQRLEALLKALKSECqgqmerqmaaiqgkNESLEKV 463
Cdd:TIGR02168 824 ERLESLERRIAATERRLED--------------LEEQIEELSEDIESLAAEIEELEELI--------------EELESEL 875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 464 SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELqhLKNEGDHL 543
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTL 953
|
330 340 350
....*....|....*....|....*....|.
gi 1622940007 544 RNVQTECEALKLQMTEKDKVIEILRQQIENM 574
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
297-519 |
2.85e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 58.10 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 297 IQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR------------MYEDKIEELEKQLVLANSELTEARTE 364
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknglvdlseeakLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 365 RDQFSQESGNLDDQLQKLLAD-----LHKREKELSLEKEQnkrlwdrdtgnsitidhLRRELDDRNMEVQRLEALLKALK 439
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpviqqLRAQLAELEAELAE-----------------LSARYTPNHPDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 440 SECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVE---ELTAKKMTLESSERTISDLTTSLQEK--ERAIE 513
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQaREASLQAQLAQLEARLAELPEleaELRRLEREVEVARELYESLLQRLEEArlAEALT 384
|
....*.
gi 1622940007 514 ATNAEI 519
Cdd:COG3206 385 VGNVRV 390
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
226-606 |
3.47e-08 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 57.00 E-value: 3.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 226 LRELDTEISFLKGRIFPVEDQLEALKSESQNKMEL--LLQQHQDRIEQLISEHEveitGLTEKASSARSQANSIQSQMEI 303
Cdd:pfam19220 19 LEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELeaLLAQERAAYGKLRRELA----GLTRRLSAAEGELEELVARLAK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 304 IQEQARNQnsmymrqlsdlESTVSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
Cdd:pfam19220 95 LEAALREA-----------EAAKEELRIELRDK----TAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 384 ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDD----RNMEVQRLEALLKALKSEcQGQMERQMAAIQGKNES 459
Cdd:pfam19220 160 GELATARERLALLEQENRRLQALSEEQAAELAELTRRLAEletqLDATRARLRALEGQLAAE-QAERERAEAQLEEAVEA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 460 LE--------KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRvdlkLQ 531
Cdd:pfam19220 239 HRaeraslrmKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQ----FQ 314
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622940007 532 ELQHLKNEGDHlrnvqtECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRtagAMQVEKAQLEKEINDRRMEL 606
Cdd:pfam19220 315 EMQRARAELEE------RAEMLTKALAAKDAALERAEERIASLSDRIAELTK---RFEVERAALEQANRRLKEEL 380
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
584-817 |
3.58e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 3.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 584 TAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElekvklvNAGSERLRAVKDIKQERDQLLNEVK 663
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-------RRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 664 TSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQI 743
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622940007 744 DALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKAS 817
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
145-719 |
4.01e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 4.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 145 NQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSilvdfeeasgkkiyehdsmstlhfrslgsaISK 224
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINE------------------------------ISS 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 225 ILRELDTEISFLKGRIFPVEDQLEALksESQNKMELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSqmeiI 304
Cdd:PRK03918 215 ELPELREELEKLEKEVKELEELKEEI--EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE----L 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 305 QEQARNqnsmyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanSELTEARTERDQFSQESGNLDDQLQKLLA 384
Cdd:PRK03918 289 KEKAEE-----YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI----KELEEKEERLEELKKKLKELEKRLEELEE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 385 DLHKREKELSLEKEQNkRLWDRDTGNSI-TIDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKV 463
Cdd:PRK03918 360 RHELYEEAKAKKEELE-RLKKRLTGLTPeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 464 SSLTAQL--ESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEaTNAEITKLRSRVD-LKLQELQHLKNEG 540
Cdd:PRK03918 439 PVCGRELteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK-KESELIKLKELAEqLKELEEKLKKYNL 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 541 DHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGqhgrtagamqvEKAQLEKEINDRRMELKEL-KILKDKKDAK 619
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK-----------KLAELEKKLDELEEELAELlKELEELGFES 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 620 IRELEARVSDLEL---EKVKLVNAGSE---RLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNF--------RN 685
Cdd:PRK03918 587 VEELEERLKELEPfynEYLELKDAEKElerEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseeeyeelRE 666
|
570 580 590
....*....|....*....|....*....|....
gi 1622940007 686 KSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSME 719
Cdd:PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
413-835 |
6.29e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 6.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 413 TIDHLRRELDDRNMEVQRLEALLKALKSEcqgqMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE 492
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKE----LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 493 SSERTISDLTTSLQEKERAIEATNAEITKLRSRVdlklQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIE 572
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKV----KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 573 NMTQLVgqhgrtagamqvekaqleKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK 652
Cdd:PRK03918 325 GIEERI------------------KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 653 QERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLKMQ-------------------LKSAQSELEQTRN 713
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgrelteehrkelLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 714 TLKSMEGSDGHAMKVAMGMQKQItAKRGQIDALQSKIQFLEEAmtnANKEKHFLKEEKSKLSQELSTVATEKNKMAGELE 793
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVL-KKESELIKLKELAEQLKEL---EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1622940007 794 VLRSQERRLKE---KVTNMEVALDKASLQFAECQDIIQRQEQESV 835
Cdd:PRK03918 543 SLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGFESV 587
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
342-545 |
7.63e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 7.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL 421
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 422 DDRNMEV-QRLEALLKA---------LKSECQGQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTL 491
Cdd:COG4942 100 EAQKEELaELLRALYRLgrqpplallLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1622940007 492 essERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN 545
Cdd:COG4942 177 ---EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
317-832 |
2.32e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.29 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 317 RQLSDLESTVSQLRSELREAKRMY---EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL--LADLHKREK 391
Cdd:PRK01156 204 KQIADDEKSHSITLKEIERLSIEYnnaMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNnyYKELEERHM 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 392 ELSLEKEQNKRLWDRDTGNSIT-IDHLRRELDDRNMEVQRLEALLKALKsecqgQMERQMAAIQGKNESLEKVSSLTAQL 470
Cdd:PRK01156 284 KIINDPVYKNRNYINDYFKYKNdIENKKQILSNIDAEINKYHAIIKKLS-----VLQKDYNDYIKKKSRYDDLNNQILEL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 471 ESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegDHLRNVQTEC 550
Cdd:PRK01156 359 EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDIS------SKVSSLNQRI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 551 EALKLQMTEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDK---- 615
Cdd:PRK01156 433 RALRENLDELSRNMEMLNGQsvcpvcgttlgEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYlese 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 616 -------KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVlkRNFRNKSE 688
Cdd:PRK01156 513 einksinEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDI--ETNRSRSN 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 689 EMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTnankEKHFLK 768
Cdd:PRK01156 591 EIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA----EIDSII 666
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622940007 769 EEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQ 832
Cdd:PRK01156 667 PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-522 |
2.56e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 93 RLNESNELHEkqkfyLRQSVIDLQTKLQEMQMERDAmadirrresqsqedLRNQLQNTVHELEAAKCLKEDMLKDSNTQI 172
Cdd:TIGR02168 672 ILERRREIEE-----LEEKIEELEEKIAELEKALAE--------------LRKELEELEEELEQLRKELEELSRQISALR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 173 EQLRKMMLSHEGVLQEIRSilvdfeeasgkkiyehdsmstlhfrslgsaISKILRELDTEISFLKGRIFPVEDQLEALKS 252
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQ------------------------------LSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 253 ESQnKMELLLQQHQDRIEQLISEH---EVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQL 329
Cdd:TIGR02168 783 EIE-ELEAQIEQLKEELKALREALdelRAELTLLNEEAANLRERLESLERRIAATERRLEDLE----EQIEELSEDIESL 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 330 RSELREakrmYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG 409
Cdd:TIGR02168 858 AAEIEE----LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 410 NSITIDHLRRELDDR-NMEVQRLEALLKALKSECQGQmERQMAAIQGKNESLEKVsSLTAqlestkemlrkvVEELTAKK 488
Cdd:TIGR02168 934 LEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEA-RRRLKRLENKIKELGPV-NLAA------------IEEYEELK 999
|
410 420 430
....*....|....*....|....*....|....
gi 1622940007 489 MTLESSERTISDLTTSLQEKERAIEATNAEITKL 522
Cdd:TIGR02168 1000 ERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
245-810 |
3.53e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.80 E-value: 3.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 245 DQLEALKSESQNKMELLlQQHQDRIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQEQARN--QNSMYMRQLSDL 322
Cdd:pfam01576 422 SESERQRAELAEKLSKL-QSELESVSSLLNEAEGKNIKLSKDVSSLESQ---LQDTQELLQEETRQklNLSTRLRQLEDE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 323 ESTVSQLRSELREAKRmyedkieELEKQLVLANSELTEARTERDQFSQESGNLDD---QLQKLLADLHKREKELSLEKEQ 399
Cdd:pfam01576 498 RNSLQEQLEEEEEAKR-------NVERQLSTLQAQLSDMKKKLEEDAGTLEALEEgkkRLQRELEALTQQLEEKAAAYDK 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 400 NKRLWDRdtgnsitidhLRRELDDRNMEVQRLEALLKALKSE---------------CQGQMERQMAAIQGKNE------ 458
Cdd:pfam01576 571 LEKTKNR----------LQQELDDLLVDLDHQRQLVSNLEKKqkkfdqmlaeekaisARYAEERDRAEAEAREKetrals 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 459 ---SLEKVSSLTAQLESTKEMLRKVVEELTAKK-------MTLESSERT----ISDLTTSLQEKERAIEATnaEITKLRS 524
Cdd:pfam01576 641 larALEEALEAKEELERTNKQLRAEMEDLVSSKddvgknvHELERSKRAleqqVEEMKTQLEELEDELQAT--EDAKLRL 718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 525 RVDLKL------QELQHLKNEGD--------HLRNVQTECEALKLQMTE---KDKVIEILRQQIENMTQLVGQhGRTAGA 587
Cdd:pfam01576 719 EVNMQAlkaqfeRDLQARDEQGEekrrqlvkQVRELEAELEDERKQRAQavaAKKKLELDLKELEAQIDAANK-GREEAV 797
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 588 MQVEKAQleKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN 667
Cdd:pfam01576 798 KQLKKLQ--AQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGAS 875
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 668 ELNSLSEEYEVLKRNFRNKSEEMEMTTN----------KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgmqkqit 737
Cdd:pfam01576 876 GKSALQDEKRRLEARIAQLEEELEEEQSntellndrlrKSTLQVEQLTTELAAERSTSQKSESARQQLER---------- 945
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622940007 738 akrgQIDALQSKIQFLEEAMTNanKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 810
Cdd:pfam01576 946 ----QNKELKAKLQEMEGTVKS--KFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVE 1012
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
317-534 |
4.33e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 4.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 317 RQLSDLESTVSQLRSELREAKRMYE---DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL 393
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKallKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 394 SlekEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKALKsecqgqmeRQMAAIQgknESLEKVSSLTAQLEST 473
Cdd:COG4942 107 A---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARR--------EQAEELR---ADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622940007 474 KEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQ 534
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
283-712 |
8.91e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 8.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 283 LTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEAR 362
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 363 TERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQNKrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKALKSEC 442
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKK--ADELKKAEELKKAEEKKK------------AEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 443 QGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTA------------KKMTLESSERTISDLTTSLQEK 508
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKkaEEEKKKVEQLKKkeaeekkkaeelKKAEEENKIKAAEEAKKAEEDK 1674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 509 ERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAM 588
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAE-----ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 589 QVEK------AQLEKEINDRRMELKELK--ILK---DKKDAKIR-ELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD 656
Cdd:PTZ00121 1750 KKDEeekkkiAHLKKEEEKKAEEIRKEKeaVIEeelDEEDEKRRmEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMED 1829
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622940007 657 QLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEE---MEMTTNKLKMQLKSAQSELEQTR 712
Cdd:PTZ00121 1830 SAIKEVADSKNMQLEEADAFEKHKFNKNNENGEdgnKEADFNKEKDLKEDDEEEIEEAD 1888
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
477-682 |
9.00e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 9.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 477 LRKVVEELTAKKMTLESsertISDLTTSLQEKERAIEATNAEITKLRSRVDLklQELQHLKNEgdhLRNVQTECEALKLQ 556
Cdd:COG4913 240 AHEALEDAREQIELLEP----IRELAERYAAARERLAELEYLRAALRLWFAQ--RRLELLEAE---LEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 557 MTEKDKVIEILRQQIENMTQLVGQHGrtagamQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVK 636
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGNG------GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622940007 637 LVNAGSERLRAVKDIK----QERDQLLNEVKTSRNELNSLSEEYEVLKRN 682
Cdd:COG4913 385 LRAEAAALLEALEEELealeEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
357-819 |
2.09e-06 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 51.61 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT---IDHLRRELDDRNMEVQRLEA 433
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGgkkYLLLQKQLEQLQEENFRLET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 434 LLKALKSECQgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLtTSLQEKERAIE 513
Cdd:pfam05622 81 ARDDYRIKCE-ELEKEVLELQHRNEELTSLAEEAQALKDEMDILRESSDKVKKLEATVETYKKKLEDL-GDLRRQVKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 514 ATNAEITK--------------LRSRVDL---KLQELQHlKNEGDHLRNVQTECEALKLQ------MTEKDKVIE---IL 567
Cdd:pfam05622 159 ERNAEYMQrtlqleeelkkanaLRGQLETykrQVQELHG-KLSEESKKADKLEFEYKKLEeklealQKEKERLIIerdTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 568 RQQIENM--TQLVGQHGRTAGAMQVEKAQ---------LEKEINDRRMELK-ELKILKDKKDAKIRELEARVSDLELEKV 635
Cdd:pfam05622 238 RETNEELrcAQLQQAELSQADALLSPSSDpgdnlaaeiMPAEIREKLIRLQhENKMLRLGQEGSYRERLTELQQLLEDAN 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 636 KLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFrnkSEEMEmttnklkmQLKSAQSELEQTRNTL 715
Cdd:pfam05622 318 RRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKL---EEHLE--------KLHEAQSELQKKKEQI 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 716 KSMEgsdghamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTnANKEKHFLKEEKSKlsQELSTVATEKNKMAG-ELEV 794
Cdd:pfam05622 387 EELE-------------PKQDSNLAQKIDELQEALRKKDEDMK-AMEERYKKYVEKAK--SVIKTLDPKQNPASPpEIQA 450
|
490 500
....*....|....*....|....*
gi 1622940007 795 LRSQERRLKEKVTNMEVALDKASLQ 819
Cdd:pfam05622 451 LKNQLLEKDKKIEHLERDFEKSKLQ 475
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
310-803 |
2.83e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 310 NQNSMYMRQLSDLESTVSQLRSELREAKrmyeDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 389
Cdd:pfam05483 240 KQVSLLLIQITEKENKMKDLTFLLEESR----DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKAL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 390 EKELSLekeQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEA----LLKALKSECQ------GQMERQMAAIQGKNES 459
Cdd:pfam05483 316 EEDLQI---ATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEAttcsLEELLRTEQQrlekneDQLKIITMELQKKSSE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 460 LEKVSSLTAQLESTKEMLRKVVEE----LTAKKMTLESSER---TISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE 532
Cdd:pfam05483 393 LEEMTKFKNNKEVELEELKKILAEdeklLDEKKQFEKIAEElkgKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 533 LQHLKNE--GDHLRNVQTECEALKLQMTEK-------DKVIEILRQQ--IENMTQLVGQHGRTAGAMQVEKAQLEKEIND 601
Cdd:pfam05483 473 VEDLKTEleKEKLKNIELTAHCDKLLLENKeltqeasDMTLELKKHQedIINCKKQEERMLKQIENLEEKEMNLRDELES 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 602 RRMELK----ELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYE 677
Cdd:pfam05483 553 VREEFIqkgdEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLN 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 678 VLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTR----NTLKSMEGSDG---HAMKVAMGMQKQITAKRGQIDALQSK- 749
Cdd:pfam05483 633 AYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKiseeKLLEEVEKAKAiadEAVKLQKEIDKRCQHKIAEMVALMEKh 712
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622940007 750 ----IQFLEEAMTNANKEKHFLKEEKS---KLSQELSTVATEKNKMAGELEVLRSQERRLK 803
Cdd:pfam05483 713 khqyDKIIEERDSELGLYKNKEQEQSSakaALEIELSNIKAELLSLKKQLEIEKEEKEKLK 773
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
101-832 |
2.83e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 101 HEKQKFYLRQ---SVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDM--LKDSNTQIEQL 175
Cdd:TIGR00606 205 HQMELKYLKQykeKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIkaLKSRKKQMEKD 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 176 RKMM-LSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTLHFRSLGSaISKILRELDTEISFLKGRIFPVEDQLEALKSES 254
Cdd:TIGR00606 285 NSELeLKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEK-LNKERRLLNQEKTELLVEQGRLQLQADRHQEHI 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 255 QnKMELLLQQHQDRIEqliseheveITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMyMRQLSDLESTVSQLRSELR 334
Cdd:TIGR00606 364 R-ARDSLIQSLATRLE---------LDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQL-CADLQSKERLKQEQADEIR 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 335 EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL---DDQLQKLLADLHKREKELSLEKEQNKRLWDRDtgNS 411
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIlelDQELRKAERELSKAEKNSLTETLKKEVKSLQN--EK 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 412 ITIDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEmLRKVVEELTAKKMTL 491
Cdd:TIGR00606 511 ADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ-LEDWLHSKSKEINQT 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 492 ESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQI 571
Cdd:TIGR00606 590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFI 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 572 ENMTQlvgqHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKdakIRELEARVSDLELEKvklvnagSERLRAVKDI 651
Cdd:TIGR00606 670 TQLTD----ENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDK---LKSTESELKKKEKRR-------DEMLGLAPGR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 652 KQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLK----------------MQLKSAQSELEQTRNTL 715
Cdd:TIGR00606 736 QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEEsakvcltdvtimerfqMELKDVERKIAQQAAKL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 716 KSMEGSdghamKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVL 795
Cdd:TIGR00606 816 QGSDLD-----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQL 890
|
730 740 750
....*....|....*....|....*....|....*..
gi 1622940007 796 RSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQ 832
Cdd:TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
567-820 |
3.85e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 567 LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR 646
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 647 AV-KDIKQERDQLLnevkTSRNELNSLSEEYEVLKRNFRNKSEEMEmttnklkmQLKSAQSELEQTRNTLksmegsdgha 725
Cdd:COG4942 112 ALyRLGRQPPLALL----LSPEDFLDAVRRLQYLKYLAPARREQAE--------ELRADLAELAALRAEL---------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 726 mkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEK 805
Cdd:COG4942 170 -------EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250
....*....|....*
gi 1622940007 806 VTNMEVALDKASLQF 820
Cdd:COG4942 243 TPAAGFAALKGKLPW 257
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
314-833 |
4.11e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 314 MYMRQLSDLESTVSQLRSELREAKRmYEDKIEELEKQLVLANSELTEARTERDQFSQEsgnldDQLQKLLADLHKREKEL 393
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELREELEKLEKL-----LQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 394 SLEKEQNKRLWDRDTgnsiTIDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQMaaiqgkNESLEKVSSLTAQLESt 473
Cdd:COG4717 142 AELPERLEELEERLE----ELRELEEELEELEAELAELQEELEELLEQLSLATEEEL------QDLAEELEELQQRLAE- 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 474 kemLRKVVEELTAKKMTLESSERTISDLTTSLQEKERaIEATNAEITKLRSRVDLklqelqhLKNEGDHLRNVQTECEAL 553
Cdd:COG4717 211 ---LEEELEEAQEELEELEEELEQLENELEAAALEER-LKEARLLLLIAAALLAL-------LGLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 554 KLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindrrmELKELKILKDKKDAKIRELEARVSDLELE 633
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE-------LLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 634 KVKLVNAgsERLRAVKDIKQERDQLLNEVK-TSRNELNSLSEEYEvlkrnfrnkseememttnklkmQLKSAQSELEQTR 712
Cdd:COG4717 353 LREAEEL--EEELQLEELEQEIAALLAEAGvEDEEELRAALEQAE----------------------EYQELKEELEELE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 713 NTLKSMEGSDGHAmkvamgmqkqitAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEknkmaGEL 792
Cdd:COG4717 409 EQLEELLGELEEL------------LEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED-----GEL 471
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1622940007 793 EVLRSQERRLKEKVTnmEVALDKASLQFAEC--QDIIQRQEQE 833
Cdd:COG4717 472 AELLQELEELKAELR--ELAEEWAALKLALEllEEAREEYREE 512
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
505-677 |
4.14e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 505 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHG-- 582
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEAR---LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnn 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 583 RTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElekvklvnagserlRAVKDIKQERDQLLNEV 662
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELE--------------AELEEKKAELDEELAEL 154
|
170
....*....|....*
gi 1622940007 663 KTSRNELNSLSEEYE 677
Cdd:COG1579 155 EAELEELEAEREELA 169
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
78-810 |
4.18e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 4.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 78 RVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIR--------RRESQSQEDLRNQLQN 149
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQiknfhtlvIERQEDEAKTAAQLCA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 150 TVHELEAAKCLKEDMLKDSNT---QIEQLRKMMLSHEgvLQEIRSILVDFE--EASGKKIYEHDSMSTLHFRSLGSAISK 224
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKglgRTIELKKEILEKK--QEELKFVIKELQqlEGSSDRILELDQELRKAERELSKAEKN 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 225 ILRE-LDTEISFLKGRIFPVEDQLEAL---------KSESQNKMELLLQQHQDRIEQLI---SEHEVEITGLTEKASSAR 291
Cdd:TIGR00606 494 SLTEtLKKEVKSLQNEKADLDRKLRKLdqemeqlnhHTTTRTQMEMLTKDKMDKDEQIRkikSRHSDELTSLLGYFPNKK 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 292 SQANSIQSQMEIIQeQARNQNSMYMRQLSDLESTVSQLRSELR---EAKRMYEDKI------EELEKQLVLANSELTEAR 362
Cdd:TIGR00606 574 QLEDWLHSKSKEIN-QTRDRLAKLNKELASLEQNKNHINNELEskeEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSS 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 363 TER----------DQFSQESGNLDDQLQKLLADLHKREKELsleKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE 432
Cdd:TIGR00606 653 KQRamlagatavySQFITQLTDENQSCCPVCQRVFQTEAEL---QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 433 ALLKALKSECQgQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKMtLESSERTISDLTTSLQEKERA 511
Cdd:TIGR00606 730 GLAPGRQSIID-LKEKEIPELRNKLQKVNRdIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERK 807
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 512 IEATNAEITKlrSRVDLKLQELQHLKNEGDH-LRNVQTECEALKLQMTEKDKVIeilrQQIENMTQLVGQHGRTAGAMQV 590
Cdd:TIGR00606 808 IAQQAAKLQG--SDLDRTVQQVNQEKQEKQHeLDTVVSKIELNRKLIQDQQEQI----QHLKSKTNELKSEKLQIGTNLQ 881
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 591 EKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR----AVKDIKQERDQLLNEVKTSR 666
Cdd:TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKkaqdKVNDIKEKVKNIHGYMKDIE 961
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 667 NELNSLSEEYEVLKrnfrnkseemEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRgqidaL 746
Cdd:TIGR00606 962 NKIQDGKDDYLKQK----------ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRK-----R 1026
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622940007 747 QSKIQFLEEAMTNANKEKHF-----LKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNME 810
Cdd:TIGR00606 1027 ENELKEVEEELKQHLKEMGQmqvlqMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
315-808 |
6.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 315 YMRQLSDLESTVSQLR------SELREAKRMYEDKIEELEK-QLVLANSELTEARTERDQFSQESGNLDDQLQKL---LA 384
Cdd:COG4913 233 HFDDLERAHEALEDAReqiellEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLEAELEELRAELARLeaeLE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 385 DLHKREKELSLEKEQNKRLWDRDTGNSIT-----IDHLRRELDDRNMEVQRLEALLKALKsecqgqmerqMAAIQGKNES 459
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGGDRLEqlereIERLERELEERERRRARLEALLAALG----------LPLPASAEEF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 460 LEKVSSLTAQLESTKEMLRKVVEELTakkmtlessertisDLTTSLQEKERAIEATNAEITKLRSR---VDLKLQEL--- 533
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALA--------------EAEAALRDLRRELRELEAEIASLERRksnIPARLLALrda 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 534 --QHLKNEGDHLRNVqteCEALKLQMTEK------------------------DKVIEILRqQIENMTQLVGQH------ 581
Cdd:COG4913 449 laEALGLDEAELPFV---GELIEVRPEEErwrgaiervlggfaltllvppehyAAALRWVN-RLHLRGRLVYERvrtglp 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 582 -------------------------------GRTAGAMQVEKA-QLEK------------------EINDRRMELKELKI 611
Cdd:COG4913 525 dperprldpdslagkldfkphpfrawleaelGRRFDYVCVDSPeELRRhpraitragqvkgngtrhEKDDRRRIRSRYVL 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 612 ------LKDKKDAKIRELEARVSDLELEKVKL---VNAGSERLRAVKDIKQERDQLLNeVKTSRNELNSLSEEYEVLKRN 682
Cdd:COG4913 605 gfdnraKLAALEAELAELEEELAEAEERLEALeaeLDALQERREALQRLAEYSWDEID-VASAEREIAELEAELERLDAS 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 683 frnkSEEMEmttnKLKMQLKSAQSELEQTRNTLKSMEGSDGhamkvamGMQKQITAKRGQIDALQSKiqfLEEAMTNANK 762
Cdd:COG4913 684 ----SDDLA----ALEEQLEELEAELEELEEELDELKGEIG-------RLEKELEQAEEELDELQDR---LEAAEDLARL 745
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1622940007 763 EKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTN 808
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELER 791
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
327-491 |
1.02e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.39 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 327 SQLRSELREAKRMYEDKIEELEKQL-VLANSELTEARTE----RDQFSQESGNLDDQLQKLLADLHKREKELSLEKEqnk 401
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAeAIKKEALLEAKEEihklRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE--- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 402 rlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKALKSECQGQMERQmaaiqgkNESLEKVSSLTAQlESTKEMLRKVV 481
Cdd:PRK12704 104 -----------LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ-------LQELERISGLTAE-EAKEILLEKVE 164
|
170
....*....|
gi 1622940007 482 EELTAKKMTL 491
Cdd:PRK12704 165 EEARHEAAVL 174
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
454-681 |
1.15e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL-----TAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDL 528
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLnplreEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 529 KLQELQHLKNEGD---------HLRNVQTECEALKLQMTEKDKVIEILRQQIEnmtqlVGQHGRTAGAMQVEKAQLEKEI 599
Cdd:PRK05771 119 LEQEIERLEPWGNfdldlslllGFKYVSVFVGTVPEDKLEELKLESDVENVEY-----ISTDKGYVYVVVVVLKELSDEV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 600 ND--RRMELKELKILKDKK-DAKIRELEARVSDLElekvklvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEY 676
Cdd:PRK05771 194 EEelKKLGFERLELEEEGTpSELIREIKEELEEIE----------KERESLLEELKELAKKYLEELLALYEYLEIELERA 263
|
....*
gi 1622940007 677 EVLKR 681
Cdd:PRK05771 264 EALSK 268
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
72-581 |
1.20e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 49.36 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 72 GKEHFERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
Cdd:pfam07111 126 GAEMVRKNLEEGSQreleEIQRLhQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 147 LQNTVHELEAAKCLKEDMLKDSNTQI---------EQLRKMMLSHEGVLQEIRS------------------ILVDFEEA 199
Cdd:pfam07111 206 LSKTQEELEAQVTLVESLRKYVGEQVppevhsqtwELERQELLDTMQHLQEDRAdlqatvellqvrvqslthMLALQEEE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 200 SGKKIYEHDSMSTLHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLEALKSE---------SQNKMELLLQQH-QDRI 269
Cdd:pfam07111 286 LTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQvaelqeqvtSQSQEQAILQRAlQDKA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 270 EQLISEH------EVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAKRMYEDK 343
Cdd:pfam07111 366 AEVEVERmsakglQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPS--LSNRLSYAVR 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 344 IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREldD 423
Cdd:pfam07111 444 KVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQ--Q 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 424 RNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtISDLTT 503
Cdd:pfam07111 522 LSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQ--LSDTKR 599
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622940007 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQH 581
Cdd:pfam07111 600 RLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQ 677
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
458-805 |
1.71e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLK 537
Cdd:PRK02224 220 EEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 538 NE-----------GDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMEL 606
Cdd:PRK02224 300 AEaglddadaeavEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 607 KELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN---------------- 670
Cdd:PRK02224 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEeaealleagkcpecgq 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 671 --------SLSEEYEVLKRNFRNKSEEMEMTTNKLK------MQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI 736
Cdd:PRK02224 460 pvegsphvETIEEDRERVEELEAELEDLEEEVEEVEerleraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA 539
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622940007 737 TAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMA------GELEVLRSQERRLKEK 805
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLErirtllAAIADAEDEIERLREK 614
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
593-814 |
1.82e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 593 AQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLvnagsERLRAVKDIKQERDQ--LLNEVKTSRNELN 670
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-----ERYQALLKEKREYEGyeLLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 671 SLSEEYEVLKRNFRNKSEEMEmttnKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG-MQKQITAKRGQIDALQSK 749
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEIS----ELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGeLEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622940007 750 IQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALD 814
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
454-848 |
1.82e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS-------ERTISDLTTSLQEKERAIEATNAEITKLRSRV 526
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLnnkyndlKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 527 DLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMEL 606
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 607 KELKILKDKKDAKIRELEARVSDLELEKVKLVNagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNK 686
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN--KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 687 seemEMTTNKLKMQLKSAQSELEQTRNTLKSMegsdghamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766
Cdd:TIGR04523 355 ----ESENSEKQRELEEKQNEIEKLKKENQSY--------------KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 767 LKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIK 846
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
..
gi 1622940007 847 EL 848
Cdd:TIGR04523 497 EL 498
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
495-801 |
2.29e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 495 ERTISDLTTSLQEKERAIEATNAEITKLRSRVD---LKLQELQHLKNEGDHLR--NVQTECEALKLQMTEKDKVIEILRQ 569
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEqakEGLSALNRLLPRLNLLAdeTLADRVEEIREQLDEAEEAKRFVQQ 915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 570 QIENMTQLVGQhgrtAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAkIRELEARVSDLELEK-VKLVNAGS---ERL 645
Cdd:PRK04863 916 HGNALAQLEPI----VSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFA-LTEVVQRRAHFSYEDaAEMLAKNSdlnEKL 990
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 646 RA-VKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEememttnklkmQLKSAQSELEQTrnTLKSMEGSDGH 724
Cdd:PRK04863 991 RQrLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQ-----------MLQELKQELQDL--GVPADSGAEER 1057
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKEEKSKLSQELSTVATEKN------KMAGELEVLRSQ 798
Cdd:PRK04863 1058 ARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKK---LRKLERDYHEMREQVVNAKAgwcavlRLVKDNGVERRL 1134
|
...
gi 1622940007 799 ERR 801
Cdd:PRK04863 1135 HRR 1137
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
297-842 |
2.35e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.66 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 297 IQSQMEIIQEQARNQ---NSMYMRQLSDLESTVSQLRSELR---EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQ 370
Cdd:pfam10174 72 LQLTIQALQDELRAQrdlNQLLQQDFTTSPVDGEDKFSTPElteENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQ 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 371 ESGNLDDQLQKLLADLHKRekelSLEKEQNKRLWDRdtgnsitidhlRRELDDRNMEVQRLEALLKALKSECQGQMERQM 450
Cdd:pfam10174 152 TLGARDESIKKLLEMLQSK----GLPKKSGEEDWER-----------TRRIAEAEMQLGHLEVLLDQKEKENIHLREELH 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 451 AAIQGKNESlekvssltaqleSTKEMLRKVVEELTAKKMTLESSERTISDLTTSL-----------QEKERAIEATNA-- 517
Cdd:pfam10174 217 RRNQLQPDP------------AKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLktngllhtedrEEEIKQMEVYKShs 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 518 -----EITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC----EALKLQMTEKDKVIEIL-------RQQIENMTQLVGQH 581
Cdd:pfam10174 285 kfmknKIDQLKQELSKKESELLALQTKLETLTNQNSDCkqhiEVLKESLTAKEQRAAILqtevdalRLRLEEKESFLNKK 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 582 GRTAGAMQVEKAQLEKEINDRR--MELKELKI-------------LKDKkDAKIRELEARVSDLELEK-------VKLVN 639
Cdd:pfam10174 365 TKQLQDLTEEKSTLAGEIRDLKdmLDVKERKInvlqkkienlqeqLRDK-DKQLAGLKERVKSLQTDSsntdtalTTLEE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 640 AGSERLRAVKDIKQERD----QLLNEVKTSRNELNSLSEEYEVLKRNFRNK----SEEMEMTTN------KLKMQLKSAQ 705
Cdd:pfam10174 444 ALSEKERIIERLKEQREredrERLEELESLKKENKDLKEKVSALQPELTEKesslIDLKEHASSlassglKKDSKLKSLE 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 706 SELEQTRNTLKSMEGSDGHAMKVAMG-------------MQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKS 772
Cdd:pfam10174 524 IAVEQKKEECSKLENQLKKAHNAEEAvrtnpeindrirlLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIA 603
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622940007 773 KLSQELSTVATEKNKMAGELEVLRSQERRLKEKV------TNMEVALDKASLQFAECQDIIQ--RQEQESVRLKLQHT 842
Cdd:pfam10174 604 ELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLleearrREDNLADNSQQLQLEELMGALEktRQELDATKARLSST 681
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
120-671 |
2.60e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 120 QEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEA 199
Cdd:pfam12128 290 QLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGK 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 200 SGKKIYEHDSMSTLHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLEALKSESQNKME---LLLQQHQDRIEQLISEH 276
Cdd:pfam12128 370 HQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEagkLEFNEEEYRLKSRLGEL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 277 EVEITGLT----------------EKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMY 340
Cdd:pfam12128 450 KLRLNQATatpelllqlenfderiERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 341 EDKieelekqlvlANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgNSITIDHLRRE 420
Cdd:pfam12128 530 FPQ----------AGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNL--------YGVKLDLKRID 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 421 LDDRNMEVQRLEALLKALKSECQGQMERQMAAiqgknesLEKVSSLTAQLESTKemlrkvvEELTAKKMTLESSERTISD 500
Cdd:pfam12128 592 VPEWAASEEELRERLDKAEEALQSAREKQAAA-------EEQLVQANGELEKAS-------REETFARTALKNARLDLRR 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 501 LTTSLQEKERAIEATNAEITKL--RSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEilrqqienmTQLV 578
Cdd:pfam12128 658 LFDEKQSEKDKKNKALAERKDSanERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVE---------GALD 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 579 GQHGRTAGAMQVEKAQLEKEIN----DRRMELKELKILKD---KKDAKIRELEARVSDLE------------------LE 633
Cdd:pfam12128 729 AQLALLKAAIAARRSGAKAELKaletWYKRDLASLGVDPDviaKLKREIRTLERKIERIAvrrqevlryfdwyqetwlQR 808
|
570 580 590
....*....|....*....|....*....|....*...
gi 1622940007 634 KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNS 671
Cdd:pfam12128 809 RPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEM 846
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
133-576 |
2.83e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 133 RRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMM--LSHEGVLQEIRSILVDFEEAsgkkiyehdsm 210
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqlLPLYQELEALEAELAELPER----------- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 211 stlhFRSLGSAISKIlRELDTEISFLKGRIFPVEDQLEALKSESQNKMELLLQQHQDRIEQL---ISEHEVEITGLTEKA 287
Cdd:COG4717 148 ----LEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELqqrLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 288 SSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQ 367
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 368 FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN--MEVQRLEALLKALKSECQGQ 445
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 446 MERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAkkmtlESSERTISDLTTSLQEKERAIEATNAEITKLRSR 525
Cdd:COG4717 383 DEEELRAALEQAEEYQE---LKEELEELEEQLEELLGELEE-----LLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1622940007 526 VDLKLQELQHLKNEGDhLRNVQTECEALKLQMTEKDK---VIEILRQQIENMTQ 576
Cdd:COG4717 455 LAELEAELEQLEEDGE-LAELLQELEELKAELRELAEewaALKLALELLEEARE 507
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
80-478 |
2.87e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 80 LEEYSHQVKDLQRRLNE---SNELHEKQKFYLRQSVIDLQTKLQEMQMER--------DAMADIRRRESQSQE------D 142
Cdd:PRK02224 316 REELEDRDEELRDRLEEcrvAAQAHNEEAESLREDADDLEERAEELREEAaeleseleEAREAVEDRREEIEEleeeieE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 143 LRNQLQNTVHELEAAKCLKEDMLKDSNtqieQLRKMMLSHEGVLQEIRSILVDFEE--ASGK-KIYEHDSMSTLHFRSLG 219
Cdd:PRK02224 396 LRERFGDAPVDLGNAEDFLEELREERD----ELREREAELEATLRTARERVEEAEAllEAGKcPECGQPVEGSPHVETIE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 220 SAISKIlRELDTEISFLKGRIFPVEDQLEALKS--ESQNKMELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
Cdd:PRK02224 472 EDRERV-EELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEER-REDLEELIAERRETIEEKRERAEELRERAAEL 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 298 QSQMEIIQEQARNQnsmyMRQLSDLESTVSQLRSELREAKRMYE--DKIEELEKQLVLANSELTEARTERDQFSQesgnL 375
Cdd:PRK02224 550 EAEAEEKREAAAEA----EEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADAEDEIERLREKREALAE----L 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 376 DDQLQKLLADLHKREKELS-------LEKEQNKRLWDRDTGNSIT--IDHLRRELDDRNMEVQRLEALLKALKSecqgqM 446
Cdd:PRK02224 622 NDERRERLAEKRERKRELEaefdearIEEAREDKERAEEYLEQVEekLDELREERDDLQAEIGAVENELEELEE-----L 696
|
410 420 430
....*....|....*....|....*....|..
gi 1622940007 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLR 478
Cdd:PRK02224 697 RERREALENRVEALEALYDEAEELESMYGDLR 728
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
589-681 |
3.20e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 589 QVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKL---VNAGSERLRAVKDIKQERDQLLNEVKTS 665
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEArseERREIRKDREISRLDREIERLERELEEE 484
|
90
....*....|....*.
gi 1622940007 666 RNELNSLSEEYEVLKR 681
Cdd:COG2433 485 RERIEELKRKLERLKE 500
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
244-814 |
3.26e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.25 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 244 EDQLEALKsESQNKMELLLQQHQDRIEQLISEHEV------EITGLTEKASSARSQANSIQSQMEII---------QEQA 308
Cdd:pfam01576 11 EEELQKVK-ERQQKAESELKELEKKHQQLCEEKNAlqeqlqAETELCAEAEEMRARLAARKQELEEIlhelesrleEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 309 RNQNSMYMR-----QLSDLESTVSQ---LRSELREAKRMYEDKIEELEKQLVL---ANSELT-EARTERDQFSQESGNLD 376
Cdd:pfam01576 90 RSQQLQNEKkkmqqHIQDLEEQLDEeeaARQKLQLEKVTTEAKIKKLEEDILLledQNSKLSkERKLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 377 DQ------LQKL----------LADLHKREKELSLEKEQNKRLWDRDTGNsitidhLRRELDDRNMEVQRLEALLKALKS 440
Cdd:pfam01576 170 EEeekaksLSKLknkheamisdLEERLKKEEKGRQELEKAKRKLEGESTD------LQEQIAELQAQIAELRAQLAKKEE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 441 ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKemlrkvvEELTAKKMTLESSERTISDLTTSLQ----EKERAIEATN 516
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISELQ-------EDLESERAARNKAEKQRRDLGEELEalktELEDTLDTTA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 517 AEiTKLRSRvdlKLQELQHLKNEGDHLRNVQtecEALKLQMTEKDKvieilrQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
Cdd:pfam01576 317 AQ-QELRSK---REQEVTELKKALEEETRSH---EAQLQEMRQKHT------QALEELTEQLEQAKRNKANLEKAKQALE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 597 KEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEY 676
Cdd:pfam01576 384 SENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDV 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 677 EVLKRNFRNKSEEMEMTTNKlKMQLKSAQSELEQTRNTLKSMegsdghamkvamgMQKQITAKRG---QIDALQSKIQFL 753
Cdd:pfam01576 464 SSLESQLQDTQELLQEETRQ-KLNLSTRLRQLEDERNSLQEQ-------------LEEEEEAKRNverQLSTLQAQLSDM 529
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622940007 754 EEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALD 814
Cdd:pfam01576 530 KKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLD 590
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
643-820 |
3.27e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 643 ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEmttnKLKMQLKSAQSELEQTRNTLKSMEGSD 722
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELE----DLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 723 GHAMKvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELS----TVATEKNKMAGELEVLRSQ 798
Cdd:COG1579 83 GNVRN-----NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAeleaELEEKKAELDEELAELEAE 157
|
170 180
....*....|....*....|..
gi 1622940007 799 ERRLKEKVTNMEVALDKASLQF 820
Cdd:COG1579 158 LEELEAEREELAAKIPPELLAL 179
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
185-676 |
4.01e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 185 VLQEIRSILVDFEEASGK--KIYEHDSMSTLHFRSLGSA-ISKILRELDTEISFLKGRIfpveDQLEALKSESQNKMELL 261
Cdd:COG4913 253 LLEPIRELAERYAAARERlaELEYLRAALRLWFAQRRLElLEAELEELRAELARLEAEL----ERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 262 LQQHQ----DRIEQLisehEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAk 337
Cdd:COG4913 329 EAQIRgnggDRLEQL----EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 338 rmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLhkrEKELSLEKEQ------------------ 399
Cdd:COG4913 404 ---EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL---AEALGLDEAElpfvgelievrpeeerwr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 400 ------------------------NKRLWDRDTGNSITIDHLRRELDDRNMEV---QRLEALLKALKSECQGQMERQMaa 452
Cdd:COG4913 478 gaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVYERVRTGLPDPERPRldpDSLAGKLDFKPHPFRAWLEAEL-- 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 453 iqGKNESLEKVSSlTAQLES-----TKEMLRKVVEELTAKKMTLE---------SSERTISDLTTSLQEKERAIEATNAE 518
Cdd:COG4913 556 --GRRFDYVCVDS-PEELRRhpraiTRAGQVKGNGTRHEKDDRRRirsryvlgfDNRAKLAALEAELAELEEELAEAEER 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 519 ITKLRSRVDL---KLQELQHLKNEGDHLRNV---QTECEALKLQMTEKDK---VIEILRQQIENMTQLVGQHGRTAGAMQ 589
Cdd:COG4913 633 LEALEAELDAlqeRREALQRLAEYSWDEIDVasaEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEELDELK 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 590 VEKAQLEKEINDRRMELKELKILKDKKDAKIRELEArvsdLELEKVKLVNAGSERLRAV-KDIKQERDQLLNEVKTSRNE 668
Cdd:COG4913 713 GEIGRLEKELEQAEEELDELQDRLEAAEDLARLELR----ALLEERFAAALGDAVERELrENLEERIDALRARLNRAEEE 788
|
....*...
gi 1622940007 669 LNSLSEEY 676
Cdd:COG4913 789 LERAMRAF 796
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
495-849 |
4.06e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 495 ERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKL----QMTEKDKVIEILRQQ 570
Cdd:TIGR04523 81 EQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDkfltEIKKKEKELEKLNNK 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 571 IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMEL--KELKILK-DKKDAKIRELEARVSDLELEKVKLVNAgserlra 647
Cdd:TIGR04523 161 YNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlkLELLLSNlKKKIQKNKSLESQISELKKQNNQLKDN------- 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 648 VKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEmTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAmk 727
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK-- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 728 vamGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVT 807
Cdd:TIGR04523 311 ---ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK 387
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1622940007 808 NMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQ 849
Cdd:TIGR04523 388 NLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
318-819 |
4.21e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.81 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 318 QLSDLESTVSQLRSELREAKRMYEDKIEELEKqlvlanseltEARTERDQFSQESgnldDQLQKLLADLHKREKELSLEK 397
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEK----------KASALKRQLDRES----DRNQELQKRIRLLEKREAEAE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 398 EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKALK---SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTK 474
Cdd:pfam05557 69 EALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKnelSELRRQIQRAELELQSTNSELEELQERLDLLKAKA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 475 EMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKlQELQHLKNEGDHLRNVQTECEALK 554
Cdd:pfam05557 149 SEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELE-KELERLREHNKHLNENIENKLLLK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 555 LQMTEKDKVIEilrqQIENMTQlvgqhgrTAGAMQVEKAQLEKEIN-------DRRMELKELKILKdkkdAKIRELEARV 627
Cdd:pfam05557 228 EEVEDLKRKLE----REEKYRE-------EAATLELEKEKLEQELQswvklaqDTGLNLRSPEDLS----RRIEQLQQRE 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 628 SDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMemttNKLKMQLKSAQSE 707
Cdd:pfam05557 293 IVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKER----DGYRAILESYDKE 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 708 LEQTRNTLKSMEGSDGhAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSklSQELSTVATEKNK 787
Cdd:pfam05557 369 LTMSNYSPQLLERIEE-AEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQES--LADPSYSKEEVDS 445
|
490 500 510
....*....|....*....|....*....|..
gi 1622940007 788 MAGELEVLRSQERRLKEKVTNMEVALDKASLQ 819
Cdd:pfam05557 446 LRRKLETLELERQRLREQKNELEMELERRCLQ 477
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
492-706 |
4.22e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 4.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 492 ESSERTISDLTTSLQEKERAIEATNAEITKLRSR---VDLKLQELQHLKNegdhLRNVQTECEALKLQMTEKDKVIEILR 568
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglVDLSEEAKLLLQQ----LSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 569 QQIENMTQLVGQHGRTAGAmqvekAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
Cdd:COG3206 247 AQLGSGPDALPELLQSPVI-----QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622940007 649 KDIKQERDQLLN----EVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLKmQLKSAQS 706
Cdd:COG3206 322 LEALQAREASLQaqlaQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE-EARLAEA 382
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-667 |
5.24e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELqhlkneGD 541
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL------GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 542 HLRNVQTEcealKLQMTEKDKV------------IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKEL 609
Cdd:COG3883 91 RARALYRS----GGSVSYLDVLlgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622940007 610 KILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN 667
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
172-833 |
6.06e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 6.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 172 IEQLRKMMLSHEGVLQEIRSILVdfeeasgkKIYEHDSMSTLHFRSLGSAISKILRELDTEISFLKGRifpvedqlealk 251
Cdd:pfam12128 181 IDKIAKAMHSKEGKFRDVKSMIV--------AILEDDGVVPPKSRLNRQQVEHWIRDIQAIAGIMKIR------------ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 252 sesqNKMELLlqqhQDRIEQLISEHeVEITGLTEKASSARSQansIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRS 331
Cdd:pfam12128 241 ----PEFTKL----QQEFNTLESAE-LRLSHLHFGYKSDETL---IASRQEERQETSAELNQLLRTLDDQWKEKRDELNG 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 332 ELREAKRMYEDKIEELE------KQLVLANSELTEARTER-DQFSQESGNLDDQLQKLLadlhkrEKELSLEKEQNKRLW 404
Cdd:pfam12128 309 ELSAADAAVAKDRSELEaledqhGAFLDADIETAAADQEQlPSWQSELENLEERLKALT------GKHQDVTAKYNRRRS 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 405 DRDTGNSITIDHLRRELDDRNMEVQRL----EALLKALKSECQGQMErqmaaiQGKNESLEKVSSLTAQLESTKEMLRKV 480
Cdd:pfam12128 383 KIKEQNNRDIAGIKDKLAKIREARDRQlavaEDDLQALESELREQLE------AGKLEFNEEEYRLKSRLGELKLRLNQA 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 481 V---EELTAKKMTLESSERTISDLTTSLQEKERAieatNAEITKLRSRVDlklQELQHLKNEGDHLRNVQTECEALKLQM 557
Cdd:pfam12128 457 TatpELLLQLENFDERIERAREEQEAANAEVERL----QSELRQARKRRD---QASEALRQASRRLEERQSALDELELQL 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 558 TEKD-KVIEILRQQIENMTQLVG------QHGRTAGAMQVEKAQLEKEIN--DRRMELKELKI---------LKDKKDA- 618
Cdd:pfam12128 530 FPQAgTLLHFLRKEAPDWEQSIGkvispeLLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVpewaaseeeLRERLDKa 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 619 -----KIRELEARV-SDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEyevLKRNFRNKSEEMEM 692
Cdd:pfam12128 610 eealqSAREKQAAAeEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKA---LAERKDSANERLNS 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 693 TTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQK-QITAKRGQIDALQS----KIQFLEEAMTNANKEKHFL 767
Cdd:pfam12128 687 LEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDaQLALLKAAIAARRSgakaELKALETWYKRDLASLGVD 766
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622940007 768 KEEKSKLSQELSTVATEKNKMAG-ELEVLR----------SQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQE 833
Cdd:pfam12128 767 PDVIAKLKREIRTLERKIERIAVrRQEVLRyfdwyqetwlQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAK 843
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
587-838 |
7.06e-05 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 46.06 E-value: 7.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 587 AMQVEKAQLEKEINDRRMELKELKilkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSR 666
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELK-------EKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 667 NELNSLSEEYEVLKRNFRNKSEEMEmTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAmgmqKQITAKRGQIDAL 746
Cdd:COG1340 78 EERDELNEKLNELREELDELRKELA-ELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKELV----EKIKELEKELEKA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 747 QSKIQFLEEAMTNANKEKHfLKEEKSKLSQELSTVATE----KNKMA---GELEVLRSQERRLKEKVTNMEVALDKASLQ 819
Cdd:COG1340 153 KKALEKNEKLKELRAELKE-LRKEAEEIHKKIKELAEEaqelHEEMIelyKEADELRKEADELHKEIVEAQEKADELHEE 231
|
250
....*....|....*....
gi 1622940007 820 FAECQDIIQRQEQESVRLK 838
Cdd:COG1340 232 IIELQKELRELRKELKKLR 250
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
287-517 |
7.45e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 287 ASSARSQANSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSELREAKRMY---EDKIEELEKQLVLANSELTEART 363
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELE----KELAALKKEEKALLKQLAALERRIaalARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 364 ERDQFSQESGNLDDQLQKLLADLHKREKELSLE-----KEQNKRLWDRDTGNSIT------IDHLRRELDDRNMEVQRLE 432
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAparreqAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 433 ALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKvveeltakkmtLESSERTISDLTTSLQEKERAI 512
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE-----------LQQEAEELEALIARLEAEAAAA 239
|
....*
gi 1622940007 513 EATNA 517
Cdd:COG4942 240 AERTP 244
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
77-635 |
7.63e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 7.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 77 ERVLEEYSHQVKDLQRRLNESNELhEKQKFYLRQSVIDLQTKLQEMQmERDAMADIRRRESQSQEDLRNQLQNTVHELEA 156
Cdd:PRK03918 220 REELEKLEKEVKELEELKEEIEEL-EKELESLEGSKRKLEEKIRELE-ERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 157 AKCLKEDMLKDSNtqieQLRKMMLSHEGVLQEIRSILVDFEEASGKKiyehdsmstlhfrslgSAISKILRELDTEISFL 236
Cdd:PRK03918 298 LSEFYEEYLDELR----EIEKRLSRLEEEINGIEERIKELEEKEERL----------------EELKKKLKELEKRLEEL 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 237 KGR------IFPVEDQLEALKSESQNKMELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIqEQARN 310
Cdd:PRK03918 358 EERhelyeeAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL-KKAKG 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 311 QNSMYMRQLSDlESTVSQLRSELREAKRMyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLddQLQKLLADLHKRE 390
Cdd:PRK03918 437 KCPVCGRELTE-EHRKELLEEYTAELKRI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKELEEKL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 391 KELSLEK-EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKALKSECQgQMERQMAAIQGK-----NESLEKVS 464
Cdd:PRK03918 513 KKYNLEElEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD-ELEEELAELLKEleelgFESVEELE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 465 SLTAQLESTKE---MLRKVVEELTAKKMTLESSERTISdlttslqEKERAIEATNAEITKLRSRvdlkLQELQHLKNEGD 541
Cdd:PRK03918 592 ERLKELEPFYNeylELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKE----LEELEKKYSEEE 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 542 HlrnvqtecEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindRRMELKELKILKDKKDA--- 618
Cdd:PRK03918 661 Y--------EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK----AKKELEKLEKALERVEElre 728
|
570
....*....|....*..
gi 1622940007 619 KIRELEARVSDLELEKV 635
Cdd:PRK03918 729 KVKKYKALLKERALSKV 745
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
224-397 |
9.68e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.59 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 224 KILRELDTEISFLKGRIFPVEDQL-------EALKSESQnKMEL--LLQQHQDRIEQlISEhevEITGLTEKASSARSQA 294
Cdd:PRK10929 79 KLSAELRQQLNNERDEPRSVPPNMstdaleqEILQVSSQ-LLEKsrQAQQEQDRARE-ISD---SLSQLPQQQTEARRQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 295 NSIQSQmeiIQEQARNQNSMYMRQLSDLESTVSQLRSelreakrmyedKIEELEKQLVLANSELTEARTERDQFSQESGN 374
Cdd:PRK10929 154 NEIERR---LQTLGTPNTPLAQAQLTALQAESAALKA-----------LVDELELAQLSANNRQELARLRSELAKKRSQQ 219
|
170 180
....*....|....*....|....*.
gi 1622940007 375 LDDQLQKL---LADLHKREKELSLEK 397
Cdd:PRK10929 220 LDAYLQALrnqLNSQRQREAERALES 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
434-843 |
1.30e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 434 LLKALKSECQGQMERQMAAI---QGKN-----ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:COG4717 39 LLAFIRAMLLERLEKEADELfkpQGRKpelnlKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 506 QEKERAIEA--TNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMT-QLVGQHG 582
Cdd:COG4717 119 EKLEKLLQLlpLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATeEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 583 RTAGAMQVEKAQLEKEINDRRMELKELK---------ILKDKKDAKIRELE----------------------------- 624
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEeeleqleneLEAAALEERLKEARlllliaaallallglggsllsliltiagv 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 625 --------ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYevLKRNFRNKSEEMEMTTNK 696
Cdd:COG4717 279 lflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 697 LKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQitakrgQIDALQSKIQFLEEAMTNANKE---------KHFL 767
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE------EYQELKEELEELEEQLEELLGEleellealdEEEL 430
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622940007 768 KEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEkvtnmEVALDKASLQFAECQDIIQRQEQESVRLKLQHTL 843
Cdd:COG4717 431 EEELEELEEELEELEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELRELAEEWAALKLALEL 501
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
114-840 |
1.74e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ---LQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIR 190
Cdd:pfam01576 191 DLEERLKKEEKGRQELEKAKRKLEGESTDLQEQiaeLQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 191 SILVDFEEASGKKiyehdsmstlhfRSLGSAISKILRELDTEISFLKGRIfpvEDQLE--ALKSESQNKMELLLQQHQDR 268
Cdd:pfam01576 271 AQISELQEDLESE------------RAARNKAEKQRRDLGEELEALKTEL---EDTLDttAAQQELRSKREQEVTELKKA 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 269 IEQLISEHEVEITGLTEKASSArsqANSIQSQMEiiqeQARNQNSMYMRQLSDLESTVSQLRSELR---EAKRMYEDKIE 345
Cdd:pfam01576 336 LEEETRSHEAQLQEMRQKHTQA---LEELTEQLE----QAKRNKANLEKAKQALESENAELQAELRtlqQAKQDSEHKRK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 346 ELEKQLVLANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN 425
Cdd:pfam01576 409 KLEGQLQELQARLSESERQRAE-------LAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEET 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 426 MEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 506 QEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT------------------------------------- 548
Cdd:pfam01576 562 EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKkfdqmlaeekaisaryaeerdraeaeareketralsl 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 549 --ECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKI-LKDKKDAKI----- 620
Cdd:pfam01576 642 arALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDeLQATEDAKLrlevn 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 621 ---------RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNfrnkSEEME 691
Cdd:pfam01576 722 mqalkaqfeRDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKG----REEAV 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 692 MTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI--------TAKRGQIDALQSKIQFLEEaMTNANKE 763
Cdd:pfam01576 798 KQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELlqlqedlaASERARRQAQQERDELADE-IASGASG 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 764 KHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNM--EVALDKASLQFAE-CQDIIQRQEQEsVRLKLQ 840
Cdd:pfam01576 877 KSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLttELAAERSTSQKSEsARQQLERQNKE-LKAKLQ 955
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
318-519 |
1.90e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 318 QLSDLESTVSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELsleK 397
Cdd:COG3883 17 QIQAKQKELSELQAELEAA----QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---G 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 398 EQNKRLWDrdtgNSITIDHLRRELDDRNME--VQRLEALLKAlksecqgqMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
Cdd:COG3883 90 ERARALYR----SGGSVSYLDVLLGSESFSdfLDRLSALSKI--------ADADADLLEELKADKAELEAKKAELEAKLA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1622940007 476 MLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEI 519
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
224-837 |
1.91e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 224 KILRELDTEISFLKGRIFPVEDQLEALKSESQNKMELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEI 303
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 304 IQEQARNQNSMYMRQ-LSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK- 381
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEiHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAf 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 382 --LLADLHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLKALKsecqgqmerqmaaiqgknES 459
Cdd:TIGR00618 420 rdLQGQLAHAKKQQELQQRYAELC-------AAAITCTAQCEKLEKIHLQESAQSLKERE------------------QQ 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 460 LEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS------ERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQ-E 532
Cdd:TIGR00618 475 LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGScihpnpARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTsE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 533 LQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGR----TAGAMQVEKAQLEKEINDRRMELKE 608
Cdd:TIGR00618 555 RKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEaedmLACEQHALLRKLQPEQDLQDVRLHL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 609 LKI---LKDKKDAKIRELEARVSDLELEKVKLVNA-----GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLK 680
Cdd:TIGR00618 635 QQCsqeLALKLTALHALQLTLTQERVREHALSIRVlpkelLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 681 RNFRNKSEememttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ--------IDALQSKIQF 752
Cdd:TIGR00618 715 EYDREFNE--------IENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEevtaalqtGAELSHLAAE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 753 LEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQ 832
Cdd:TIGR00618 787 IQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQ 866
|
....*
gi 1622940007 833 ESVRL 837
Cdd:TIGR00618 867 EQAKI 871
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
267-849 |
2.08e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 267 DRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNS--MYMRQLSDLESTVSQLRSELREAKrmyEDKI 344
Cdd:pfam02463 205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEeiESSKQEIEKEEEKLAQVLKENKEE---EKEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 345 EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitidhlrrelddr 424
Cdd:pfam02463 282 KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE------------------------- 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 425 nMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEStkEMLRKVVEELTAKKMTLESSERTISDLTTS 504
Cdd:pfam02463 337 -IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES--ERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 505 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRT 584
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 585 AGA---MQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEA----------RVSDLELEKVKLVNAGSERLRAVKDI 651
Cdd:pfam02463 494 KLEersQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAvenykvaistAVIVEVSATADEVEERQKLVRALTEL 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 652 KQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLK------MQLKSAQSELEQTRNTLKSMEGSDGHA 725
Cdd:pfam02463 574 PLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrakvveGILKDTELTKLKESAKAKESGLRKGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 726 MKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEK 805
Cdd:pfam02463 654 LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1622940007 806 VTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQ 849
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA 777
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
311-679 |
2.15e-04 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 44.53 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 311 QNSMYMRQLSDLESTVSQLRSELREakrMYEDKIEELEKQLvlanseltearterDQFSQESGNLDDQLQKLLADLhkRE 390
Cdd:pfam00038 26 QNKLLETKISELRQKKGAEPSRLYS---LYEKEIEDLRRQL--------------DTLTVERARLQLELDNLRLAA--ED 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 391 KELSLEKEQNKRlwdrdTGNSITIDHLRRELDDRNMEVQRLEALLKALKSECQGQmerqmaaiqgKNESLEKVSSLTAQL 470
Cdd:pfam00038 87 FRQKYEDELNLR-----TSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFL----------KKNHEEEVRELQAQV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 471 ESTkemlRKVVEELTAKKMtlessertisDLTTSLQEKERAIEATNAeitklRSRVDLKlqelqhlknegdhlrnvqtec 550
Cdd:pfam00038 152 SDT----QVNVEMDAARKL----------DLTSALAEIRAQYEEIAA-----KNREEAE--------------------- 191
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 551 ealklqmtekdkviEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSdl 630
Cdd:pfam00038 192 --------------EWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEERYE-- 255
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1622940007 631 elekvklvnagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVL 679
Cdd:pfam00038 256 ---------------LQLADYQELISELEAELQETRQEMARQLREYQEL 289
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
620-918 |
2.86e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 620 IRELEARVSDLELEKVKlvnagSERLRAVKD---------IKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEM 690
Cdd:TIGR02168 195 LNELERQLKSLERQAEK-----AERYKELKAelrelelalLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 691 EMTT---NKLKMQLKSAQSELEQTRNTLKSMEgsdghamkvamgMQKQITAKRgqIDALQSKIQFLEEAMTNANKEKHFL 767
Cdd:TIGR02168 270 EELRlevSELEEEIEELQKELYALANEISRLE------------QQKQILRER--LANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 768 KEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTlDIKE 847
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE-RLED 414
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622940007 848 LQGPGYTSNSSLKPRlLQPASVTRSHSNVPSSQSTASFLSHHSTKANTLKEDPTRDLKQLLQELRSVINEE 918
Cdd:TIGR02168 415 RRERLQQEIEELLKK-LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
418-675 |
4.20e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 418 RRELDDRNMEVQRLEALLKALKSECQGQME------------RQMAAIQGKN-ESLEKVSSltAQLESTKEMLRKVVEEL 484
Cdd:PHA02562 152 RRKLVEDLLDISVLSEMDKLNKDKIRELNQqiqtldmkidhiQQQIKTYNKNiEEQRKKNG--ENIARKQNKYDELVEEA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 485 TAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLkLQELQHLKNEGDhlrnvqtECEALKLQMTEKDKVI 564
Cdd:PHA02562 230 KTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ-FQKVIKMYEKGG-------VCPTCTQQISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 565 EILRQQIENMTQLVGQhgrtAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNagser 644
Cdd:PHA02562 302 TKIKDKLKELQHSLEK----LDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA----- 372
|
250 260 270
....*....|....*....|....*....|.
gi 1622940007 645 lrAVKDIKQERDQLLNEVKTSRNELNSLSEE 675
Cdd:PHA02562 373 --EFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
121-540 |
4.97e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 4.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 121 EMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSN---TQIEQLRKMMLSHEGVLQEIRSILVDFE 197
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNnkeVELEELKKILAEDEKLLDEKKQFEKIAE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 198 EASGKkiyEHDSMSTLHFRslgsaiSKILRELDTEISFLKGRIFPVEDQLEALKSESQNK--MELLLQQHQDRIeqlise 275
Cdd:pfam05483 433 ELKGK---EQELIFLLQAR------EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEklKNIELTAHCDKL------ 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 276 hEVEITGLTEKASSARSQansIQSQMEIIQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLAN 355
Cdd:pfam05483 498 -LLENKELTQEASDMTLE---LKKHQEDIINCKKQEERM-LKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 356 SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL 435
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKF 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 436 KALKSECQGQMERQMAAIQGKNESLE----------------------KVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
Cdd:pfam05483 653 EEIIDNYQKEIEDKKISEEKLLEEVEkakaiadeavklqkeidkrcqhKIAEMVALMEKHKHQYDKIIEERDSELGLYKN 732
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1622940007 494 SERTISDLTTSLqekERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
Cdd:pfam05483 733 KEQEQSSAKAAL---EIELSNIKAELLSLKKQLEIEKEEKEKLKMEA 776
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
269-488 |
5.38e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 269 IEQLISEHEVEITGLTEKASSARSQANSIQSQMEiiqeqarnqnsmyMRQLSDLESTVSQLRSELREakrmYEDKIEELE 348
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE-------------EEEIRRLEEQVERLEAEVEE----LEAELEEKD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 349 KQLVLANSELTEARTERDQfsqesgnlddqlqklladLHKREKELS-LEKEqnkrlwdrdtgnsitIDHLRRELDDRNME 427
Cdd:COG2433 441 ERIERLERELSEARSEERR------------------EIRKDREISrLDRE---------------IERLERELEEERER 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622940007 428 VQRLEALLKALKsecqgqmerQMAAIQGKNE--SLEKVSSLtaqlesTKEMLRKVVEELTAKK 488
Cdd:COG2433 488 IEELKRKLERLK---------ELWKLEHSGElvPVKVVEKF------TKEAIRRLEEEYGLKE 535
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
287-658 |
5.53e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 5.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 287 ASSARSQANSIQSQMEIIQEQARNQNSMYMRQlSDLESTVSQLrselrEAKRMYEDKIEELEKQLVLANSELTEARTERD 366
Cdd:PRK11281 31 SNGDLPTEADVQAQLDALNKQKLLEAEDKLVQ-QDLEQTLALL-----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 367 QFSQEsgnLDDQLQKLLADLHKREkelsLEKEQNKRL-----WDRD--TGNSITI------DHLRRELDDRNMEVQRLEA 433
Cdd:PRK11281 105 ALKDD---NDEETRETLSTLSLRQ----LESRLAQTLdqlqnAQNDlaEYNSQLVslqtqpERAQAALYANSQRLQQIRN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 434 LLK-------ALKSECQGQMERQMAAIQGKNE----SLEKVSSLTaqlestkEMLRKVVEELTAKKMTLessERTISDLT 502
Cdd:PRK11281 178 LLKggkvggkALRPSQRVLLQAEQALLNAQNDlqrkSLEGNTQLQ-------DLLQKQRDYLTARIQRL---EHQLQLLQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 503 TSLQEKERAI-EATnaeitklrsrvdlkLQELQHLKNEGDHLRN--VQTECEAlKLQMTEKdkvieiLRQQIENMTQLVG 579
Cdd:PRK11281 248 EAINSKRLTLsEKT--------------VQEAQSQDEAARIQANplVAQELEI-NLQLSQR------LLKATEKLNTLTQ 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 580 QHGRTA----GAMQVEKAqLEKEINDRRMELKELKILKDKK-----DAKIRELEARVSDLELEKVklvnagserlravkD 650
Cdd:PRK11281 307 QNLRVKnwldRLTQSERN-IKEQISVLKGSLLLSRILYQQQqalpsADLIEGLADRIADLRLEQF--------------E 371
|
....*...
gi 1622940007 651 IKQERDQL 658
Cdd:PRK11281 372 INQQRDAL 379
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
277-519 |
5.86e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 277 EVEITGLTEKASSARSQANSIQSQMEIIQEqarnqnsmymrQLSDLESTVSQLRSELREAkrmyEDKIEELEKQLVLANS 356
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQA-----------ELEELNEEYNELQAELEAL----QAEIDKLQAEIAEAEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 357 ELTEARTERDQF---SQESGNLDDQLQKLL-----ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEV 428
Cdd:COG3883 80 EIEERREELGERaraLYRSGGSVSYLDVLLgsesfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 429 QRLEALLKALKSEcqgqMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQE 507
Cdd:COG3883 160 EALKAELEAAKAE----LEAQQAEQEALLAQLSaEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
250
....*....|..
gi 1622940007 508 KERAIEATNAEI 519
Cdd:COG3883 236 AAAAAAAAASAA 247
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
295-663 |
6.72e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 295 NSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSE----------LREAKRMYEDKIEELEKQLVLANSELTEartE 364
Cdd:pfam10174 397 NVLQKKIENLQEQLRDKD----KQLAGLKERVKSLQTDssntdtalttLEEALSEKERIIERLKEQREREDRERLE---E 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 365 RDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKalKSECQG 444
Cdd:pfam10174 470 LESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLK--KAHNAE 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 445 QMERQMAAIQGKNESLEKVSSLTAQlESTKEM--LRKVVEELTAKKMTLESSERTISDL--TTSLQEKERAIEATNAEIT 520
Cdd:pfam10174 548 EAVRTNPEINDRIRLLEQEVARYKE-ESGKAQaeVERLLGILREVENEKNDKDKKIAELesLTLRQMKEQNKKVANIKHG 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 521 KLRSRVDLKLQELQHLKNEGDHLRNVQtecealKLQMTEKDKVIEILRQQIENMTQLVGQhgrTAGAMQVEKAQLEKEIN 600
Cdd:pfam10174 627 QQEMKKKGAQLLEEARRREDNLADNSQ------QLQLEELMGALEKTRQELDATKARLSS---TQQSLAEKDGHLTNLRA 697
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622940007 601 DRRMELKElkILKDKKD---AKIRELEARVSDLELEKVKLVNAGSErlraVKDIKQERDQLLNEVK 663
Cdd:pfam10174 698 ERRKQLEE--ILEMKQEallAAISEKDANIALLELSSSKKKKTQEE----VMALKREKDRLVHQLK 757
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
228-422 |
6.74e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 228 ELDTEISFLKGRIFPVEDQLEalksESQNKMELLLQQHQdrieqlISEHEVEITGLTEKASSARSQANSIQSQMEIIQ-- 305
Cdd:COG3206 172 EARKALEFLEEQLPELRKELE----EAEAALEEFRQKNG------LVDLSEEAKLLLQQLSELESQLAEARAELAEAEar 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 306 -EQARNQNSMYMRQLSDL--ESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTE----RDQFSQESGNLDDQ 378
Cdd:COG3206 242 lAALRAQLGSGPDALPELlqSPVIQQLRAQLAELEA----ELAELSARYTPNHPDVIALRAQiaalRAQLQQEAQRILAS 317
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1622940007 379 LQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD 422
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
458-647 |
7.74e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 7.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDlKLQELQHLK 537
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK-KYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 538 NEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIEnmtqlvgqhgrtagAMQVEKAQLEKEINDRRmelKELKILKDKKD 617
Cdd:COG1579 86 RNNKEYEALQKEIESLKRRISDLEDEILELMERIE--------------ELEEELAELEAELAELE---AELEEKKAELD 148
|
170 180 190
....*....|....*....|....*....|
gi 1622940007 618 AKIRELEARVSDLELEKVKLVNAGSERLRA 647
Cdd:COG1579 149 EELAELEAELEELEAEREELAAKIPPELLA 178
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
222-371 |
8.54e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 222 ISKILRELDTEISFLKGRIFPVEDQLEALKSESQNkmellLQQHQDRIEQLISEHEVEITGLTEKASSARS--QANSIQS 299
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELED-----LEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622940007 300 QMEIIQEQARNQNSMY---MRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQE 371
Cdd:COG1579 97 EIESLKRRISDLEDEIlelMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
49-728 |
1.40e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 49 TQVPFFPKYEVELDSPRKIIQY-PGKEHFERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQ--SVIDLQTKLQEMQME 125
Cdd:TIGR00618 274 AQEAVLEETQERINRARKAAPLaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQqsSIEEQRRLLQTLHSQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 126 RDAMADIRRRESQSQEDLRNQLQNT--VHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK 203
Cdd:TIGR00618 354 EIHIRDAHEVATSIREISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQ 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 204 IYEHDSMSTLHFRSLGSAISKILRELDTEISF--LKGRIFPVEDQLEALKSESQNKME-----LLLQQHQDRIEQLISEH 276
Cdd:TIGR00618 434 ELQQRYAELCAAAITCTAQCEKLEKIHLQESAqsLKEREQQLQTKEQIHLQETRKKAVvlarlLELQEEPCPLCGSCIHP 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 277 EVEITGLTEKASSARSQANSIQSQMEIIQEqarnqnsmymrqlsdLESTVSQLRSELREAKRmYEDKIEELEKQLvlanS 356
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETS---------------EEDVYHQLTSERKQRAS-LKEQMQEIQQSF----S 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtGNSITIDHLRRELDDRNMEvQRLEALLK 436
Cdd:TIGR00618 574 ILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR------KLQPEQDLQDVRLHLQQCS-QELALKLT 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 437 ALKSEC-----QGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERA 511
Cdd:TIGR00618 647 ALHALQltltqERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENA 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 512 IEATNAEITKLRSRVDLKLQELQHLKnegdhlRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVE 591
Cdd:TIGR00618 727 SSSLGSDLAAREDALNQSLKELMHQA------RTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHL 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 592 KAQLEKEINDRRMELKELKILKDKKDAKirELEARVSDLElEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNS 671
Cdd:TIGR00618 801 LKTLEAEIGQEIPSDEDILNLQCETLVQ--EEEQFLSRLE-EKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622940007 672 LsEEYEVLKRNFR-NKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKV 728
Cdd:TIGR00618 878 L-NGINQIKIQFDgDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARKYQGLA 934
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
561-749 |
1.46e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLElEKVK---- 636
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERR-EELGerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 637 --------------LVNAGS-----ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKL 697
Cdd:COG3883 94 alyrsggsvsyldvLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622940007 698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
306-655 |
1.52e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 306 EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYeDKIEELEKQLVLA-----NSELTEARTERDQfSQESGNLDDQLQ 380
Cdd:PRK04863 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGL-SALNRLLPRLNLLadetlADRVEEIREQLDE-AEEAKRFVQQHG 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 381 KLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKALKSecqgQMERQMA-----AIQG 455
Cdd:PRK04863 918 NALAQLEPIVSVLQSDPEQ--------------FEQLKQDYQQAQQTQRDAKQQAFALTE----VVQRRAHfsyedAAEM 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTakkmtlessertisdlttslQEKERAIEAtNAEITKLRSRVDLKLQELQH 535
Cdd:PRK04863 980 LAKNSDLNEKLRQRLEQAEQERTRAREQLR--------------------QAQAQLAQY-NQVLASLKSSYDAKRQMLQE 1038
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 536 LKNEGDHLrNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDK 615
Cdd:PRK04863 1039 LKQELQDL-GVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1622940007 616 KDAKIRelEARVSDLE--LEKVKLVNAGSERLRAVKDIKQER 655
Cdd:PRK04863 1118 WCAVLR--LVKDNGVErrLHRRELAYLSADELRSMSDKALGA 1157
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
414-572 |
2.13e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 414 IDHLRRELDDRNMEVQRLEALLKALKSECQgQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKV--VEELTAKKMT 490
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLE-AAKTELEDLEKEIKRLElEIEEVEARIKKYEEQLGNVrnNKEYEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 491 LESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMTEKDKVIEILRQQ 570
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE------LDEELAELEAELEELEAEREELAAK 171
|
..
gi 1622940007 571 IE 572
Cdd:COG1579 172 IP 173
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
344-441 |
2.16e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 344 IEELEKQLVLANSELTEARTERDQFSQESgnlddqlqklLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDD 423
Cdd:COG0542 413 LDELERRLEQLEIEKEALKKEQDEASFER----------LAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQ 482
|
90
....*....|....*...
gi 1622940007 424 RNMEVQRLEALLKALKSE 441
Cdd:COG0542 483 RYGKIPELEKELAELEEE 500
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
263-639 |
2.24e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 41.97 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 263 QQHQDRIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQEQArnQNSMYMRQLSDLESTVSQLRSELREAKRMyed 342
Cdd:pfam13166 95 QEKIAKLKKEIKDHEEKLDAAEANLQKLDKE---KEKLEADFLDEC--WKKIKRKKNSALSEALNGFKYEANFKSRL--- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 343 kIEELEKQLVLANSELTEarterDQFSQESGNLDDQLQKLLADLHKREKEL-SLEKEQnkrLWDRD-TGNSITIDHLRRE 420
Cdd:pfam13166 167 -LREIEKDNFNAGVLLSD-----EDRKAALATVFSDNKPEIAPLTFNVIDFdALEKAE---ILIQKvIGKSSAIEELIKN 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 421 LDDRNMeVQRLEALLKALKSEC---QGQMERQMAAIQGK---NESLEKVSSLTAQLESTKEMLRKVVEELTAkkMTLESS 494
Cdd:pfam13166 238 PDLADW-VEQGLELHKAHLDTCpfcGQPLPAERKAALEAhfdDEFTEFQNRLQKLIEKVESAISSLLAQLPA--VSDLAS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 495 ERTISDLTTslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNegdhLRNVQTECEALKLQMTEKDKVIEILRQQIENM 574
Cdd:pfam13166 315 LLSAFELDV--EDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE----LDSVDAKIESINDLVASINELIAKHNEITDNF 388
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622940007 575 TQLVgQHGRTA-------------GAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDlELEKVKLVN 639
Cdd:pfam13166 389 EEEK-NKAKKKlrlhlveefkseiDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQLRD-HKPGADEIN 464
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
73-629 |
2.38e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 73 KEHFERvLEEYSHQVKDLQRR---LNESNELHEKqkfyLRQSVIDLQTklqemQMERDAMADI--RRRESQSQEDLRNQL 147
Cdd:COG4913 231 VEHFDD-LERAHEALEDAREQielLEPIRELAER----YAAARERLAE-----LEYLRAALRLwfAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 148 QNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGvlQEIRSILVDFEEASGKKiyehdsmstlhfrslgSAISKILR 227
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGG--DRLEQLEREIERLEREL----------------EERERRRA 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 228 ELDTEISFLKGRIFPVEDQLEALKSEsqnkmellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQ 307
Cdd:COG4913 363 RLEALLAALGLPLPASAEEFAALRAE--------AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 308 ARNQNSMYMRQLSDLESTVSQLRSEL---------REAKRMYEDKIE---------------------------ELEKQL 351
Cdd:COG4913 435 KSNIPARLLALRDALAEALGLDEAELpfvgelievRPEEERWRGAIErvlggfaltllvppehyaaalrwvnrlHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 352 VLANSELTEARTERDQFSQES---------GNLDDQLQKLLA---DLHK--REKELslekeqnkrlwdRDTGNSITID-- 415
Cdd:COG4913 515 VYERVRTGLPDPERPRLDPDSlagkldfkpHPFRAWLEAELGrrfDYVCvdSPEEL------------RRHPRAITRAgq 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 416 ----HLRRELDDRNMEVQRL------EALLKALKSECQgQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKvVEELT 485
Cdd:COG4913 583 vkgnGTRHEKDDRRRIRSRYvlgfdnRAKLAALEAELA-ELEEELAEAE---ERLEALEAELDALQERREALQR-LAEYS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 486 AKKMTLESSERTISDlttsLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMTEKDKVIE 565
Cdd:COG4913 658 WDEIDVASAEREIAE----LEAELERLDASSDDLAALEEQLEELEAELEELEEE---LDELKGEIGRLEKELEQAEEELD 730
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622940007 566 ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMEL-KELKILKDKKDAKIRELEARVSD 629
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLeERIDALRARLNRAEEELERAMRA 795
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
308-575 |
2.39e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 41.98 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 308 ARNQNSMYMRQLSDLESTVSQ--LRSE--LREAKRMyEDKIEELEKQ----------LVLANSELTEARTERDQFSQESG 373
Cdd:pfam05622 181 LRGQLETYKRQVQELHGKLSEesKKADklEFEYKKL-EEKLEALQKEkerliierdtLRETNEELRCAQLQQAELSQADA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 374 NLD------DQLQKLLADLHKREKELSLEKEqNKRLWDRDTGNSI-TIDHLRRELDDRNMEVQRLEALLKALK---SECQ 443
Cdd:pfam05622 260 LLSpssdpgDNLAAEIMPAEIREKLIRLQHE-NKMLRLGQEGSYReRLTELQQLLEDANRRKNELETQNRLANqriLELQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 444 GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTI-SDLTTSLQEKERAIEATNAEITKL 522
Cdd:pfam05622 339 QQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQSELQKKKEQIEELEPKQdSNLAQKIDELQEALRKKDEDMKAM 418
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1622940007 523 RSRVDLKLQELQH-LKNEGDHLRNVQT-ECEALKLQMTEKDKVIEILRQQIENMT 575
Cdd:pfam05622 419 EERYKKYVEKAKSvIKTLDPKQNPASPpEIQALKNQLLEKDKKIEHLERDFEKSK 473
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
336-836 |
2.40e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 336 AKRMYEDKIEELEKQLVLANSElTEARTERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQNKRlwdrdtgnsiTID 415
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADELKKAE-EKKKADEAKKAEEKKKADEAKKK--AEEAKKADEAKKKAEEAKK----------KAD 1332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 416 HLRRELDDRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTAKKMTLES 493
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKK 1412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 494 SErtiSDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnvQTECEALKLQMTEKDKVIEILRQQIEN 573
Cdd:PTZ00121 1413 AA---AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE-------AKKAEEAKKKAEEAKKADEAKKKAEEA 1482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRElEARVSDlELEKVKLVNAGSERLRAVKDIKQ 653
Cdd:PTZ00121 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKAD-EAKKAEEKKKADELKKAEELKKA 1560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 654 ERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEE-MEMTTNKLKMQLKSAQSElEQTRNTLKSMEGSDGHAMKVAMGM 732
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvMKLYEEEKKMKAEEAKKA-EEAKIKAEELKKAEEEKKKVEQLK 1639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 733 QKQITAKRgqiDALQSKiqfLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVA 812
Cdd:PTZ00121 1640 KKEAEEKK---KAEELK---KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
|
490 500
....*....|....*....|....
gi 1622940007 813 LDKASLQFAECQDIIQRQEQESVR 836
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEAKK 1737
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
367-505 |
2.82e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 367 QF--SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLKALkSECQG 444
Cdd:PRK09039 41 QFflSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDS-------VANLRASLSAAEAERSRLQALLAEL-AGAGA 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622940007 445 QMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSL 505
Cdd:PRK09039 113 AAEGRAGELAQELDSEKQVSAralaqvelLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
637-764 |
2.86e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 41.37 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 637 LVNAGSERLR--AVKDIKQERDQLLNEVKTSRNELnslseeyevlkRNFRNK---------SEEMEMTTNKLKMQLKSAQ 705
Cdd:COG3524 166 LVNQLSERARedAVRFAEEEVERAEERLRDAREAL-----------LAFRNRngildpeatAEALLQLIATLEGQLAELE 234
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622940007 706 SELEQTRNTLksmegSDGHAmkvamgmqkQITAKRGQIDALQSKIQFLEEAMTNANKEK 764
Cdd:COG3524 235 AELAALRSYL-----SPNSP---------QVRQLRRRIAALEKQIAAERARLTGASGGD 279
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
114-338 |
3.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAkclkEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSIL 193
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL----ARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 194 VDFEEASGK---KIYEHDSMSTLHFRSLGSAISKILRELDTEISFLKGRifpvEDQLEALKSESQ--NKMELLLQQHQDR 268
Cdd:COG4942 100 EAQKEELAEllrALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAelAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 269 IEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNsmymRQLSDLESTVSQLRSELREAKR 338
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIARLEAEAAAAAE 241
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
243-675 |
3.27e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 243 VEDQLEALKSESQNKME--LLLQQHQDRIEQL--ISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQ 318
Cdd:PRK11281 41 VQAQLDALNKQKLLEAEdkLVQQDLEQTLALLdkIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLST 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 319 LS--DLESTVSQLRSELreakrmyedkiEELEKQLVLANSELTEART--ERDQF--------SQESGNL----------- 375
Cdd:PRK11281 121 LSlrQLESRLAQTLDQL-----------QNAQNDLAEYNSQLVSLQTqpERAQAalyansqrLQQIRNLlkggkvggkal 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 376 -DDQLQKLLADLHKrekeLSLEKEQNKRLWdrdTGNSITIDHLRRELDDRNMEVQRLEALLKALKsecqgqmerqmAAIQ 454
Cdd:PRK11281 190 rPSQRVLLQAEQAL----LNAQNDLQRKSL---EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQ-----------EAIN 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 455 GKN--ESLEKVssltAQLESTKEMLRKVVEELTAKkmtlessertisDLTTSLQEKERAIEATnaeiTKLRSRVDlklQE 532
Cdd:PRK11281 252 SKRltLSEKTV----QEAQSQDEAARIQANPLVAQ------------ELEINLQLSQRLLKAT----EKLNTLTQ---QN 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 533 LQhLKNEGDHLrnVQTEcEALKLQMTekdkVIE-------ILRQQIENMTQLVgqhgrtagamqvEKAQLEKEINDRRME 605
Cdd:PRK11281 309 LR-VKNWLDRL--TQSE-RNIKEQIS----VLKgslllsrILYQQQQALPSAD------------LIEGLADRIADLRLE 368
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 606 LKELKILKDKkdakIRELEARVSDLELEKVKLVNAgserlravkdikQERDQLLNEVKTSRNELNSLSEE 675
Cdd:PRK11281 369 QFEINQQRDA----LFQPDAYIDKLEAGHKSEVTD------------EVRDALLQLLDERRELLDQLNKQ 422
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
74-439 |
3.60e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 74 EHFERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDamaDIRRRESQSQEDLRnQLQNTVHE 153
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE---ELQQRLAELEEELE-EAQEELEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 154 LEAakclKEDMLKDSNTQIEQLRKmmLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTLHFRSLGSAIskILRELDTEI 233
Cdd:COG4717 225 LEE----ELEQLENELEAAALEER--LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLA--LLFLLLARE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 234 SFLKGRIFPVEDQLEALKSESQNKMELLLQQHQDRIEQLISEHEVEITGLtEKASSARSQANSIQSQMEIIQEQARNQNS 313
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI-EELQELLREAEELEEELQLEELEQEIAAL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 314 MYMRQLSDLESTVSQLrsELREAKRMYEDKIEELEKQLVLANSELTE--ARTERDQFSQESGNLDDQLQKL---LADLHK 388
Cdd:COG4717 376 LAEAGVEDEEELRAAL--EQAEEYQELKEELEELEEQLEELLGELEEllEALDEEELEEELEELEEELEELeeeLEELRE 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1622940007 389 REKELSLEKEQnkrlwdrdTGNSITIDHLRRELDDRNMEVQRLEALLKALK 439
Cdd:COG4717 454 ELAELEAELEQ--------LEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
329-681 |
3.61e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 329 LRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDT 408
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 409 GNSITIDHLRRELDDRNMEVQRLEALLKAL---KSECQGQMER-----QMAAIQGKNESLEKvSSLTAQLESTKEMLRKV 480
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLtqrVLERETELERmkeraKKAGAQRKEEEAER-KQLQAKLQQTEEELRSL 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 481 VEELTAKK----------MTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnvqtec 550
Cdd:pfam07888 191 SKEFQELRnslaqrdtqvLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE----------- 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 551 eaLKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL--EKEINDRRMELKELKILKdkKDAKIRELEARVS 628
Cdd:pfam07888 260 --LSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWaqERETLQQSAEADKDRIEK--LSAELQRLEERLQ 335
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1622940007 629 DLELEKVKLVnagserlravKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKR 681
Cdd:pfam07888 336 EERMEREKLE----------VELGREKDCNRVQLSESRRELQELKASLRVAQK 378
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
395-676 |
3.79e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 395 LEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKALKSEcqgqmerqmaaiqgkneslekVSSLTAQLESTK 474
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAE---------------------VEELEAELEEKD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 475 EMLRKVVEELTAKKMTLESSERtisdlttslqeKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRnvqtecEALK 554
Cdd:COG2433 441 ERIERLERELSEARSEERREIR-----------KDREISRLDREIERLERELEEERERIEELKRKLERLK------ELWK 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 555 LQMTEKD---KVIEIL-RQQIENMTQLVGQHG------RTAGAMQVEKAQLEKEINDRRMELKELkiLKDKKDAKIRELE 624
Cdd:COG2433 504 LEHSGELvpvKVVEKFtKEAIRRLEEEYGLKEgdvvylRDASGAGRSTAELLAEAGPRAVIVPGE--LSEAADEVLFEEG 581
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622940007 625 ---ARVSDLELEKV-KLVNAGSERL-RAVKDIKQERDQLLNEVKTSRneLNSLSEEY 676
Cdd:COG2433 582 ipvLPAEDVTIQEVdDLAVVDEEELeAAIEDWEERAEERRREKKAEM--LERLISEY 636
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
341-534 |
3.81e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 341 EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL-SLEKEQNKrlwdrdtgNSITIDHLRR 419
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdKLQAEIAE--------AEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 420 ELDDRNMEVQR-------LEALLKALK-SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTL 491
Cdd:COG3883 87 ELGERARALYRsggsvsyLDVLLGSESfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1622940007 492 ESSErtiSDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQ 534
Cdd:COG3883 167 EAAK---AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELA 206
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
492-840 |
3.93e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 492 ESSERTISDLTTSLQEKE---RAIEATNAEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTEC-EALKLQmtEKDKV 563
Cdd:pfam12128 175 ESPLRHIDKIAKAMHSKEgkfRDVKSMIVAILEDDGVVPpksrLNRQQVEHWIRDIQAIAGIMKIRpEFTKLQ--QEFNT 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 564 IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-RMELKELKILKDKKDAKIRELEARVSDLELEkvklVNAGS 642
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLlRTLDDQWKEKRDELNGELSAADAAVAKDRSE----LEALE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 643 ERLRAVKDIKQE-RDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNtlKSMEGS 721
Cdd:pfam12128 329 DQHGAFLDADIEtAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLA--KIREAR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 722 DghamkvamgmqKQITAKRGQIDALQSKIQF-LEEAMTNANKEKHFLKEEKSKLSQELSTVATEK-------------NK 787
Cdd:pfam12128 407 D-----------RQLAVAEDDLQALESELREqLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPelllqlenfderiER 475
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1622940007 788 MAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
Cdd:pfam12128 476 AREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
227-347 |
4.60e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 227 RELDTEISFLKGRIFPVEDQLEALKSESQNKMELLLQQHQDRIEQLIsEHEVEITGLTEKASSARSQA---NSIQSQMEI 303
Cdd:COG3096 535 ERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRS-ELRQQLEQLRARIKELAARApawLAAQDALER 613
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1622940007 304 IQEQA------RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL 347
Cdd:COG3096 614 LREQSgealadSQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
229-400 |
4.61e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 229 LDTEISFLKGRIFPVEDQLEALKSESQNkmellLQQHQDRIEQLISEHEVEITGLTEKA--SSARSQANSIQSQMEIIQE 306
Cdd:COG3206 210 LSEEAKLLLQQLSELESQLAEARAELAE-----AEARLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSA 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLD------DQLQ 380
Cdd:COG3206 285 RYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRrlerevEVAR 364
|
170 180
....*....|....*....|
gi 1622940007 381 KLLADLHKREKELSLEKEQN 400
Cdd:COG3206 365 ELYESLLQRLEEARLAEALT 384
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
556-822 |
4.84e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 556 QMTEKDKVIEILRQQIENMTQLVGQHGrtagAMQVEKAQLE--KEINDRRMELKELKILKDKKDAKIRELEARVSDLELE 633
Cdd:COG4913 216 YMLEEPDTFEAADALVEHFDDLERAHE----ALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 634 KVKlvnagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFR-NKSEEMEmttnKLKMQLKSAQSELEQTR 712
Cdd:COG4913 292 LLE---------AELEELRAELARLEAELERLEARLDALREELDELEAQIRgNGGDRLE----QLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 713 NTLKSMEGsdghamkvamgmqkqiTAKRGQIDALQSKIQFlEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGEL 792
Cdd:COG4913 359 RRRARLEA----------------LLAALGLPLPASAEEF-AALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
|
250 260 270
....*....|....*....|....*....|
gi 1622940007 793 EVLRSQERRLKEKVTNMEVALDKASLQFAE 822
Cdd:COG4913 422 RELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
262-710 |
4.94e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.88 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANsiqsqmeiiQEQARNQN-SMYMRQLSDLESTVSQLRSELREAKRMY 340
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLD---------RESDRNQElQKRIRLLEKREAEAEEALREQAELNRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 341 EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLR-- 418
Cdd:pfam05557 82 KKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEkq 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 419 -RELDDRNMEVQRLE----------ALLKALKSECQ--GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELT 485
Cdd:pfam05557 162 qSSLAEAEQRIKELEfeiqsqeqdsEIVKNSKSELAriPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 486 AKKMTLESSERTISDLTTSLQEKERAIEATNAEITK---LRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKdk 562
Cdd:pfam05557 242 KYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSpedLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQE-- 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 563 vIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKE------LKILKDKKDAKIRELEARVSDLELEKVK 636
Cdd:pfam05557 320 -LAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESydkeltMSNYSPQLLERIEEAEDMTQKMQAHNEE 398
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622940007 637 LVNAGSERLRAVKDIKQERDQLLNEVKTSR-----NELNSLSEEYEVLKRnfrnKSEEMEMTTNKLKMQLKSAQSELEQ 710
Cdd:pfam05557 399 MEAQLSVAEEELGGYKQQAQTLERELQALRqqeslADPSYSKEEVDSLRR----KLETLELERQRLREQKNELEMELER 473
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
474-849 |
5.23e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 474 KEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQE----LQHLKNE-GDHLRNVQT 548
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEdhekIQHLEEEyKKEINDKEK 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 549 ECEALKLQMTEKDK-------VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKE----LKILKDKKD 617
Cdd:pfam05483 241 QVSLLLIQITEKENkmkdltfLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRsmstQKALEEDLQ 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEEYEVLKRNFRNKSEEMEMTTnKL 697
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMT-KF 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQE 777
Cdd:pfam05483 400 KNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE 479
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622940007 778 LSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASlqfaecQDIIQRQEQESVRLKLQHTLDIKELQ 849
Cdd:pfam05483 480 LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ------EDIINCKKQEERMLKQIENLEEKEMN 545
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
480-622 |
6.76e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 480 VVEEltAKKMTLESSERtISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMTE 559
Cdd:PRK00409 503 IIEE--AKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK------LQEEEDKLLEEAEK 573
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622940007 560 K-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--KEINDRRMELKELKILKDKKDAKIRE 622
Cdd:PRK00409 574 EaQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEarKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
409-719 |
7.40e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 409 GNSITIDHLRRELDDRNMEVQRLEALLKALkSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRK---VVEELT 485
Cdd:TIGR01612 1105 ENIKYADEINKIKDDIKNLDQKIDHHIKAL-EEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKienIVTKID 1183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 486 AKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLrnvqtecealklqmtekdkvIE 565
Cdd:TIGR01612 1184 KKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHM--------------------IK 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 566 ILRQQIENMTQLVGQHGRTAGAMQVEKaqlekeinDRRMELKELKILKDK-KDAKI--RELEARVSDLELEKVKLVNAGS 642
Cdd:TIGR01612 1244 AMEAYIEDLDEIKEKSPEIENEMGIEM--------DIKAEMETFNISHDDdKDHHIisKKHDENISDIREKSLKIIEDFS 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 643 ERlRAVKDIKQERDQLLNEVKTSRNE----LNSLSEEYEVLK-RNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKS 717
Cdd:TIGR01612 1316 EE-SDINDIKKELQKNLLDAQKHNSDinlyLNEIANIYNILKlNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKK 1394
|
..
gi 1622940007 718 ME 719
Cdd:TIGR01612 1395 IK 1396
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
226-399 |
7.48e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 226 LRELDTEISFLKGRIFPVEDQLEALKSESQNKMELLlqqhqDRIEQLISEHEVEITGLTEKASSARSQansIQSQMEIIQ 305
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEY-----NELQAELEALQAEIDKLQAEIAEAEAE---IEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 306 EQARNQ------------------------NSMYMRQLSD----LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSE 357
Cdd:COG3883 90 ERARALyrsggsvsyldvllgsesfsdfldRLSALSKIADadadLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1622940007 358 LTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
592-832 |
7.81e-03 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 40.09 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 592 KAQLEKEINDRRMELKELKILKD----KKDAKIRELEARVSDL---------ELEKVKLVNAGSERLRAvKDIKQERDQL 658
Cdd:pfam03528 24 KQQLEAEFNQKRAKFKELYLAKEedlkRQNAVLQEAQVELDALqnqlalaraEMENIKAVATVSENTKQ-EAIDEVKSQW 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 659 LNEVKTSRNELNSLSEEYEVL--------KRNFRNKSEEMEMTTNKLKMQLKSAQSElEQTRNTLKSMEGSDGHAMKVAM 730
Cdd:pfam03528 103 QEEVASLQAIMKETVREYEVQfhrrleqeRAQWNQYRESAEREIADLRRRLSEGQEE-ENLEDEMKKAQEDAEKLRSVVM 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 731 GMQKQITAKRGQIDALQSKIQFLEEamTNANKEKHFLKEEKS---KLSQELSTVATEKNKMAGELEVLRSQERRL----- 802
Cdd:pfam03528 182 PMEKEIAALKAKLTEAEDKIKELEA--SKMKELNHYLEAEKScrtDLEMYVAVLNTQKSVLQEDAEKLRKELHEVchlle 259
|
250 260 270
....*....|....*....|....*....|..
gi 1622940007 803 --KEKVTNMEVALDKASLQFAECQDIIQRQEQ 832
Cdd:pfam03528 260 qeRQQHNQLKHTWQKANDQFLESQRLLMRDMQ 291
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
244-351 |
9.06e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.04 E-value: 9.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 244 EDQLEALKSESQNkMELLLQQHQDRIEQLISE-HEVEitgltEKASSARSQANSIQSQMEIIQEQARNQNSMYmrqlSDL 322
Cdd:pfam05911 687 KEEFEQLKSEKEN-LEVELASCTENLESTKSQlQESE-----QLIAELRSELASLKESNSLAETQLKCMAESY----EDL 756
|
90 100
....*....|....*....|....*....
gi 1622940007 323 ESTVSQLRSELREAKRmyedKIEELEKQL 351
Cdd:pfam05911 757 ETRLTELEAELNELRQ----KFEALEVEL 781
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
669-837 |
9.60e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 669 LNSLSEEYevLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLK---------SMEGSDGHAMKVAMGMQKQITAK 739
Cdd:COG3206 154 ANALAEAY--LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEefrqknglvDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 740 RGQIDALQSKIQFLEEAM---------TNANKEKHFLKEEKSKLSQ---ELSTVATEKN----KMAGELEVLRSQ-ERRL 802
Cdd:COG3206 232 RAELAEAEARLAALRAQLgsgpdalpeLLQSPVIQQLRAQLAELEAelaELSARYTPNHpdviALRAQIAALRAQlQQEA 311
|
170 180 190
....*....|....*....|....*....|....*
gi 1622940007 803 KEKVTNMEVALDKASLQFAECQDIIQRQEQESVRL 837
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
226-399 |
9.84e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 9.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 226 LRELDTEISFLKGRIFPVEDQLEALKSESQNkmellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQmeiiQ 305
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAA-----LEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ----L 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622940007 306 EQARNQnsmymRQLSDLESTVSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
Cdd:COG1579 83 GNVRNN-----KEYEALQKEIESLKRRISDL----EDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE 153
|
170
....*....|....
gi 1622940007 386 LHKREKELSLEKEQ 399
Cdd:COG1579 154 LEAELEELEAEREE 167
|
|
| |
