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janus kinase and microtubule-interacting protein 1 isoform X6 [Macaca mulatta]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
415-612
5.31e-77
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 247.49
E-value: 5.31e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 415 ER ER L L R SKRH R G K SL K PPKKH - VVETFFG F DEE - SVDSET l S ET SYNTDRTD R TPATP E EDLD DTT A R EEA D LRF C QLT 492
Cdd:pfam16034 1 ER DK L I R ARKQ R R K EK K KKLRD m VVETFFG Y DEE a SVDSET - S SL SYNTDRTD S TPATP D EDLD EGV A A EEA E LRF R QLT 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 493 REYQALQRAYALLQEQ V GGTLDAEREA R TREQLQA D L L R C Q AK IEDLE KL L VE KGQDSKWVEEKQ L LIR T NQ D L L EKI YR 572
Cdd:pfam16034 80 REYQALQRAYALLQEQ S GGTLDAEREA K TREQLQA E L R R A Q SR IEDLE SA L AQ KGQDSKWVEEKQ A LIR R NQ E L V EKI RI 159
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1622937715 573 L E M EE NQ LKNE M QDA K DQNELLEFR V LELEERERRSPA F N 612
Cdd:pfam16034 160 M E Q EE GR LKNE I QDA R DQNELLEFR I LELEERERRSPA I N 199
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
24-607
2.01e-11
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 67.65
E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 24 E EL R A K L TSIQIEFQQEKSKVGKLRERLQ EA K LE REQEQRRHTAYIS E LKAKLH EE KTK EL QALREGL i RQHEQ E A AR TA 103
Cdd:COG1196 223 K EL E A E L LLLKLRELEAELEELEAELEEL EA E LE ELEAELAELEAEL E ELRLEL EE LEL EL EEAQAEE - YELLA E L AR LE 301
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 104 KIKEGELQ R LQA tlnvlrdgaadkvktal L T E AR EE ARRAFDGERLR L QQEIL EL KAARKQA EEA lsncm QADKTK A ADL 183
Cdd:COG1196 302 QDIARLEE R RRE ----------------- L E E RL EE LEEELAELEEE L EELEE EL EELEEEL EEA ----- EEELEE A EAE 359
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 184 R A AYQAHQD E VHRIKR E C E RDIRR L MD E IKGKD R VILA L EKE L GVQAGQTQK LL LQK E A L D E Q L VQVK EA ERH hsspkre 263
Cdd:COG1196 360 L A EAEEALL E AEAELA E A E EELEE L AE E LLEAL R AAAE L AAQ L EELEEAEEA LL ERL E R L E E E L EELE EA LAE ------- 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 264 lppgigdmv ELMGVQDQHMDERDVRRFQLKIA E LNSVIRK L EDRNTLL A DERNEL L KRSR E TEVQLKPLVEKNKRMNKKN 343
Cdd:COG1196 433 --------- LEEEEEEEEEALEEAAEEEAELE E EEEALLE L LAELLEE A ALLEAA L AELL E ELAEAAARLLLLLEAEADY 503
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 344 E DL L QSIQRMEEKIKN -------- LTRENVEMK E KLSAQ A SLKRHTSLNDLSLTRDEQE IE F L RLQVLEQQHVIDDLSLE 415
Cdd:COG1196 504 E GF L EGVKAALLLAGL rglagava VLIGVEAAY E AALEA A LAAALQNIVVEDDEVAAAA IE Y L KAAKAGRATFLPLDKIR 583
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 416 RERL L RSKRH RG KSLKPPKKHVVETFFGFDEES V DSE TL SETSYNTD R TDRTPATPEEDLDDTTAREEADLRFCQLTREY 495
Cdd:COG1196 584 ARAA L AAALA RG AIGAAVDLVASDLREADARYY V LGD TL LGRTLVAA R LEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 496 QALQ R AYALLQEQ vggt LD AE R E ARTREQLQAD L LRCQ A KIEDL E KLLVEKGQDSKWV EE KQLLIRTNQD L LEKIYR L EM 575
Cdd:COG1196 664 GGSR R ELLAALLE ---- AE AE L E ELAERLAEEE L ELEE A LLAEE E EERELAEAEEERL EE ELEEEALEEQ L EAEREE L LE 739
570 580 590
....*....|....*....|....*....|..
gi 1622937715 576 E ENQLKNEMQDAKDQNELLEFRVL ELE ERER R 607
Cdd:COG1196 740 E LLEEEELLEEEALEELPEPPDLE ELE RELE R 771
SMC_prok_B super family
cl37069 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
491-777
1.99e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
TIGR02168 :Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 41.97
E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 491 L TREYQA L QRAYAL LQE QV ggtlda EREARTR E Q L Q A D L LRCQA K I E D L EK llv E KGQDSKWV EE K Q lli RTNQD L LEK I 570
Cdd:TIGR02168 230 L VLRLEE L REELEE LQE EL ------ KEAEEEL E E L T A E L QELEE K L E E L RL --- E VSELEEEI EE L Q --- KELYA L ANE I 297
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 571 Y RLE MEENQ L KNEMQDAKD Q N E L LE FRVL ELE ERERRSPA fnlqittfp E NNSSALQ L FCHQ E GVKDV nv SELMKK L DIL 650
Cdd:TIGR02168 298 S RLE QQKQI L RERLANLER Q L E E LE AQLE ELE SKLDELAE --------- E LAELEEK L EELK E ELESL -- EAELEE L EAE 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 651 GDNGNL R N EE - QVAIIQAGTVL A LC E KWLKQIEGTEAA L TQKMLD LE KEKKIQDL E ATLYTALQQ E PGRRAGE A LS E G -- 727
Cdd:TIGR02168 367 LEELES R L EE l EEQLETLRSKV A QL E LQIASLNNEIER L EARLER LE DRRERLQQ E IEELLKKLE E AELKELQ A EL E E le 446
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1622937715 728 - QR E D LQ AAV E KVRRQ -- I LR QSR E FDS Q I L RERMEL L Q Q A Q Q R IRE LE DKL E 777
Cdd:TIGR02168 447 e EL E E LQ EEL E RLEEA le E LR EEL E EAE Q A L DAAERE L A Q L Q A R LDS LE RLQ E 499
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
415-612
5.31e-77
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 247.49
E-value: 5.31e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 415 ER ER L L R SKRH R G K SL K PPKKH - VVETFFG F DEE - SVDSET l S ET SYNTDRTD R TPATP E EDLD DTT A R EEA D LRF C QLT 492
Cdd:pfam16034 1 ER DK L I R ARKQ R R K EK K KKLRD m VVETFFG Y DEE a SVDSET - S SL SYNTDRTD S TPATP D EDLD EGV A A EEA E LRF R QLT 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 493 REYQALQRAYALLQEQ V GGTLDAEREA R TREQLQA D L L R C Q AK IEDLE KL L VE KGQDSKWVEEKQ L LIR T NQ D L L EKI YR 572
Cdd:pfam16034 80 REYQALQRAYALLQEQ S GGTLDAEREA K TREQLQA E L R R A Q SR IEDLE SA L AQ KGQDSKWVEEKQ A LIR R NQ E L V EKI RI 159
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1622937715 573 L E M EE NQ LKNE M QDA K DQNELLEFR V LELEERERRSPA F N 612
Cdd:pfam16034 160 M E Q EE GR LKNE I QDA R DQNELLEFR I LELEERERRSPA I N 199
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
24-607
2.01e-11
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 67.65
E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 24 E EL R A K L TSIQIEFQQEKSKVGKLRERLQ EA K LE REQEQRRHTAYIS E LKAKLH EE KTK EL QALREGL i RQHEQ E A AR TA 103
Cdd:COG1196 223 K EL E A E L LLLKLRELEAELEELEAELEEL EA E LE ELEAELAELEAEL E ELRLEL EE LEL EL EEAQAEE - YELLA E L AR LE 301
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 104 KIKEGELQ R LQA tlnvlrdgaadkvktal L T E AR EE ARRAFDGERLR L QQEIL EL KAARKQA EEA lsncm QADKTK A ADL 183
Cdd:COG1196 302 QDIARLEE R RRE ----------------- L E E RL EE LEEELAELEEE L EELEE EL EELEEEL EEA ----- EEELEE A EAE 359
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 184 R A AYQAHQD E VHRIKR E C E RDIRR L MD E IKGKD R VILA L EKE L GVQAGQTQK LL LQK E A L D E Q L VQVK EA ERH hsspkre 263
Cdd:COG1196 360 L A EAEEALL E AEAELA E A E EELEE L AE E LLEAL R AAAE L AAQ L EELEEAEEA LL ERL E R L E E E L EELE EA LAE ------- 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 264 lppgigdmv ELMGVQDQHMDERDVRRFQLKIA E LNSVIRK L EDRNTLL A DERNEL L KRSR E TEVQLKPLVEKNKRMNKKN 343
Cdd:COG1196 433 --------- LEEEEEEEEEALEEAAEEEAELE E EEEALLE L LAELLEE A ALLEAA L AELL E ELAEAAARLLLLLEAEADY 503
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 344 E DL L QSIQRMEEKIKN -------- LTRENVEMK E KLSAQ A SLKRHTSLNDLSLTRDEQE IE F L RLQVLEQQHVIDDLSLE 415
Cdd:COG1196 504 E GF L EGVKAALLLAGL rglagava VLIGVEAAY E AALEA A LAAALQNIVVEDDEVAAAA IE Y L KAAKAGRATFLPLDKIR 583
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 416 RERL L RSKRH RG KSLKPPKKHVVETFFGFDEES V DSE TL SETSYNTD R TDRTPATPEEDLDDTTAREEADLRFCQLTREY 495
Cdd:COG1196 584 ARAA L AAALA RG AIGAAVDLVASDLREADARYY V LGD TL LGRTLVAA R LEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 496 QALQ R AYALLQEQ vggt LD AE R E ARTREQLQAD L LRCQ A KIEDL E KLLVEKGQDSKWV EE KQLLIRTNQD L LEKIYR L EM 575
Cdd:COG1196 664 GGSR R ELLAALLE ---- AE AE L E ELAERLAEEE L ELEE A LLAEE E EERELAEAEEERL EE ELEEEALEEQ L EAEREE L LE 739
570 580 590
....*....|....*....|....*....|..
gi 1622937715 576 E ENQLKNEMQDAKDQNELLEFRVL ELE ERER R 607
Cdd:COG1196 740 E LLEEEELLEEEALEELPEPPDLE ELE RELE R 771
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
6-363
9.72e-07
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 52.76
E-value: 9.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 6 R S KGEKP E MET D AVQMANEELRA K LTS I QI E FQ Q EKSKVG KL R ERL Q E AKLEREQEQRRHTAYI SELK aklhe E KTKELQ 85
Cdd:TIGR02169 694 Q S ELRRI E NRL D ELSQELSDASR K IGE I EK E IE Q LEQEEE KL K ERL E E LEEDLSSLEQEIENVK SELK ----- E LEARIE 768
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 86 A L R E G L IRQH E QEAART A KIKEGELQRL QA T L NV L RDGAADKVKTALLT E AREEAR ---- RAFDG E RLR LQ QEILE LK AA 161
Cdd:TIGR02169 769 E L E E D L HKLE E ALNDLE A RLSHSRIPEI QA E L SK L EEEVSRIEARLREI E QKLNRL tlek EYLEK E IQE LQ EQRID LK EQ 848
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 162 R K QA E EALS N cmqa DKT K AAD L RAAYQAHQDEV hrikrecerdi R R L MDEIKGKDRVILA LE KE L GVQAGQTQK L LL Q K E 241
Cdd:TIGR02169 849 I K SI E KEIE N ---- LNG K KEE L EEELEELEAAL ----------- R D L ESRLGDLKKERDE LE AQ L RELERKIEE L EA Q I E 913
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 242 ALDEQ L VQV K EAERHHSSPKR E LPPGI G DMV E lmg VQDQHMDER DV rrf Q LKIAELNSV IR K LE DR N T L LAD E RN E L LKR 321
Cdd:TIGR02169 914 KKRKR L SEL K AKLEALEEELS E IEDPK G EDE E --- IPEEELSLE DV --- Q AELQRVEEE IR A LE PV N M L AIQ E YE E V LKR 987
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1622937715 322 sretevq L KP L V EK NKRMNKKNEDL L QS I QRM E E K IKNLTR E 363
Cdd:TIGR02169 988 ------- L DE L K EK RAKLEEERKAI L ER I EEY E K K KREVFM E 1022
SMC_N
pfam02463 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
42-789
5.66e-06
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain]
Cd Length: 1161
Bit Score: 50.36
E-value: 5.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 42 S KVGKLRERLQEAKL E REQEQRRHTAYIS ELK AKLHEE K TKELQ AL REGLIRQHEQEAARTAKIKE g E L QRLQATLNV L R 121
Cdd:pfam02463 165 S RLKRKKKEALKKLI E ETENLAELIIDLE ELK LQELKL K EQAKK AL EYYQLKEKLELEEEYLLYLD - Y L KLNEERIDL L Q 243
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 122 DGAA D KVKTALLTEARE E ARR afdg E R L RLQQEILELKAAR K QAE E ALSNCMQADKTKAADLRAAYQAHQDEVHRIKR E C 201
Cdd:pfam02463 244 ELLR D EQEEIESSKQEI E KEE ---- E K L AQVLKENKEEEKE K KLQ E EELKLLAKEEEELKSELLKLERRKVDDEEKLK E S 319
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 202 E RDIRRLMD E I K GKDRV I LA LEKEL GVQAGQTQKLLLQK E A L DEQLVQVKEA E RHHSSP K RELPPGIGDMVE L MGVQDQ h 281
Cdd:pfam02463 320 E KEKKKAEK E L K KEKEE I EE LEKEL KELEIKREAEEEEE E E L EKLQEKLEQL E EELLAK K KLESERLSSAAK L KEEELE - 398
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 282 MDERDVRRF QL KIAELNSVIRK L EDRNTLLADERN E LLKRS ---------- R E TEVQLKPLVE K NKRMN KK N EDLL QSI Q 351
Cdd:pfam02463 399 LKSEEEKEA QL LLELARQLEDL L KEEKKEELEILE E EEESI elkqgkltee K E ELEKQELKLL K DELEL KK S EDLL KET Q 478
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 352 RMEEKIKNLTRENVEMK E KL S AQA S LK R HTSLND L S L TR D EQEIEFLRLQVL -- EQQHVIDDLSLERERLLRSKRHRGKS 429
Cdd:pfam02463 479 LVKLQEQLELLLSRQKL E ER S QKE S KA R SGLKVL L A L IK D GVGGRIISAHGR lg DLGVAVENYKVAISTAVIVEVSATAD 558
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 430 LKPPKKHV V ETFFGFDEESVDSET L SETSYNTDRTDRTP --- ATPEEDLD D TTAR E EADLRFCQLTR E YQALQRAYAL L Q 506
Cdd:pfam02463 559 EVEERQKL V RALTELPLGARKLRL L IPKLKLPLKSIAVL eid PILNLAQL D KATL E ADEDDKRAKVV E GILKDTELTK L K 638
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 507 E QVGGTLDAE R EARTR E QLQ A DLLRCQ A KIED L E K L L V E KGQDSKWV E EKQLLIRTNQDL LE KI yrl EM E ENQLKNEMQD 586
Cdd:pfam02463 639 E SAKAKESGL R KGVSL E EGL A EKSEVK A SLSE L T K E L L E IQELQEKA E SELAKEEILRRQ LE IK --- KK E QREKEELKKL 715
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 587 AKDQN ELL EF RV L E LEERERRSPAFNL Q ITTFP E NNSSALQ L FCHQEGVKDVNV S ELM K K L DILGDNGNLRNE E QVAIIQ 666
Cdd:pfam02463 716 KLEAE ELL AD RV Q E AQDKINEELKLLK Q KIDEE E EEEEKSR L KKEEKEEEKSEL S LKE K E L AEEREKTEKLKV E EEKEEK 795
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 667 AGTVLALCEKWLKQIEGTEAA L TQKM L DL E K E K KI QDL E ATLYTALQQ E PGRRAGE A LS E GQ R EDLQAAV E KVRRQI L RQ 746
Cdd:pfam02463 796 LKAQEEELRALEEELKEEAEL L EEEQ L LI E Q E E KI KEE E LEELALELK E EQKLEKL A EE E LE R LEEEITK E ELLQEL L LK 875
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 1622937715 747 SR E FDS Q I L RERM E LLQQAQQRIRELEDKLEFQKRH L K E L E EK 789
Cdd:pfam02463 876 EE E LEE Q K L KDEL E SKEEKEKEEKKELEEESQKLNL L E E K E NE 918
PTZ00121
PTZ00121 MAEBL; Provisional
38-246
2.50e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 48.21
E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 38 QQ E KS K VGK LR ERLQEA K L E REQEQRRHTA Y IS E L K A K LH E E K TK E LQALREGLIRQH E Q E AARTAKI K EG E LQRLQATL 117
Cdd:PTZ00121 1571 KA E ED K NMA LR KAEEAK K A E EARIEEVMKL Y EE E K K M K AE E A K KA E EAKIKAEELKKA E E E KKKVEQL K KK E AEEKKKAE 1650
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 118 NVLRDGAAD K V K T A LLTEAR EE ARRAFDGERLRLQQ E ILELK A AR K Q AEEA ----- L SNCMQAD K T KA AD L RA A YQAHQD 192
Cdd:PTZ00121 1651 ELKKAEEEN K I K A A EEAKKA EE DKKKAEEAKKAEED E KKAAE A LK K E AEEA kkaee L KKKEAEE K K KA EE L KK A EEENKI 1730
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622937715 193 EVHRI K R E C E R D IRRL ---- M DE IKG K DRVI L AL E K E LGVQAGQTQ K LLLQK E A LDE Q 246
Cdd:PTZ00121 1731 KAEEA K K E A E E D KKKA eeak K DE EEK K KIAH L KK E E E KKAEEIRKE K EAVIE E E LDE E 1788
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
491-777
1.99e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 41.97
E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 491 L TREYQA L QRAYAL LQE QV ggtlda EREARTR E Q L Q A D L LRCQA K I E D L EK llv E KGQDSKWV EE K Q lli RTNQD L LEK I 570
Cdd:TIGR02168 230 L VLRLEE L REELEE LQE EL ------ KEAEEEL E E L T A E L QELEE K L E E L RL --- E VSELEEEI EE L Q --- KELYA L ANE I 297
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 571 Y RLE MEENQ L KNEMQDAKD Q N E L LE FRVL ELE ERERRSPA fnlqittfp E NNSSALQ L FCHQ E GVKDV nv SELMKK L DIL 650
Cdd:TIGR02168 298 S RLE QQKQI L RERLANLER Q L E E LE AQLE ELE SKLDELAE --------- E LAELEEK L EELK E ELESL -- EAELEE L EAE 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 651 GDNGNL R N EE - QVAIIQAGTVL A LC E KWLKQIEGTEAA L TQKMLD LE KEKKIQDL E ATLYTALQQ E PGRRAGE A LS E G -- 727
Cdd:TIGR02168 367 LEELES R L EE l EEQLETLRSKV A QL E LQIASLNNEIER L EARLER LE DRRERLQQ E IEELLKKLE E AELKELQ A EL E E le 446
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1622937715 728 - QR E D LQ AAV E KVRRQ -- I LR QSR E FDS Q I L RERMEL L Q Q A Q Q R IRE LE DKL E 777
Cdd:TIGR02168 447 e EL E E LQ EEL E RLEEA le E LR EEL E EAE Q A L DAAERE L A Q L Q A R LDS LE RLQ E 499
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
415-612
5.31e-77
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 247.49
E-value: 5.31e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 415 ER ER L L R SKRH R G K SL K PPKKH - VVETFFG F DEE - SVDSET l S ET SYNTDRTD R TPATP E EDLD DTT A R EEA D LRF C QLT 492
Cdd:pfam16034 1 ER DK L I R ARKQ R R K EK K KKLRD m VVETFFG Y DEE a SVDSET - S SL SYNTDRTD S TPATP D EDLD EGV A A EEA E LRF R QLT 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 493 REYQALQRAYALLQEQ V GGTLDAEREA R TREQLQA D L L R C Q AK IEDLE KL L VE KGQDSKWVEEKQ L LIR T NQ D L L EKI YR 572
Cdd:pfam16034 80 REYQALQRAYALLQEQ S GGTLDAEREA K TREQLQA E L R R A Q SR IEDLE SA L AQ KGQDSKWVEEKQ A LIR R NQ E L V EKI RI 159
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1622937715 573 L E M EE NQ LKNE M QDA K DQNELLEFR V LELEERERRSPA F N 612
Cdd:pfam16034 160 M E Q EE GR LKNE I QDA R DQNELLEFR I LELEERERRSPA I N 199
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
24-607
2.01e-11
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 67.65
E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 24 E EL R A K L TSIQIEFQQEKSKVGKLRERLQ EA K LE REQEQRRHTAYIS E LKAKLH EE KTK EL QALREGL i RQHEQ E A AR TA 103
Cdd:COG1196 223 K EL E A E L LLLKLRELEAELEELEAELEEL EA E LE ELEAELAELEAEL E ELRLEL EE LEL EL EEAQAEE - YELLA E L AR LE 301
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 104 KIKEGELQ R LQA tlnvlrdgaadkvktal L T E AR EE ARRAFDGERLR L QQEIL EL KAARKQA EEA lsncm QADKTK A ADL 183
Cdd:COG1196 302 QDIARLEE R RRE ----------------- L E E RL EE LEEELAELEEE L EELEE EL EELEEEL EEA ----- EEELEE A EAE 359
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 184 R A AYQAHQD E VHRIKR E C E RDIRR L MD E IKGKD R VILA L EKE L GVQAGQTQK LL LQK E A L D E Q L VQVK EA ERH hsspkre 263
Cdd:COG1196 360 L A EAEEALL E AEAELA E A E EELEE L AE E LLEAL R AAAE L AAQ L EELEEAEEA LL ERL E R L E E E L EELE EA LAE ------- 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 264 lppgigdmv ELMGVQDQHMDERDVRRFQLKIA E LNSVIRK L EDRNTLL A DERNEL L KRSR E TEVQLKPLVEKNKRMNKKN 343
Cdd:COG1196 433 --------- LEEEEEEEEEALEEAAEEEAELE E EEEALLE L LAELLEE A ALLEAA L AELL E ELAEAAARLLLLLEAEADY 503
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 344 E DL L QSIQRMEEKIKN -------- LTRENVEMK E KLSAQ A SLKRHTSLNDLSLTRDEQE IE F L RLQVLEQQHVIDDLSLE 415
Cdd:COG1196 504 E GF L EGVKAALLLAGL rglagava VLIGVEAAY E AALEA A LAAALQNIVVEDDEVAAAA IE Y L KAAKAGRATFLPLDKIR 583
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 416 RERL L RSKRH RG KSLKPPKKHVVETFFGFDEES V DSE TL SETSYNTD R TDRTPATPEEDLDDTTAREEADLRFCQLTREY 495
Cdd:COG1196 584 ARAA L AAALA RG AIGAAVDLVASDLREADARYY V LGD TL LGRTLVAA R LEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 496 QALQ R AYALLQEQ vggt LD AE R E ARTREQLQAD L LRCQ A KIEDL E KLLVEKGQDSKWV EE KQLLIRTNQD L LEKIYR L EM 575
Cdd:COG1196 664 GGSR R ELLAALLE ---- AE AE L E ELAERLAEEE L ELEE A LLAEE E EERELAEAEEERL EE ELEEEALEEQ L EAEREE L LE 739
570 580 590
....*....|....*....|....*....|..
gi 1622937715 576 E ENQLKNEMQDAKDQNELLEFRVL ELE ERER R 607
Cdd:COG1196 740 E LLEEEELLEEEALEELPEPPDLE ELE RELE R 771
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
13-541
9.92e-09
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 59.18
E-value: 9.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 13 E M E TDAVQMAN EEL R A K L TSIQI E FQQEKSKVGK L RER L Q EA --------- K L E R EQEQRRHTAYISELKAKLH EE KTK E 83
Cdd:COG1196 245 E A E LEELEAEL EEL E A E L AELEA E LEELRLELEE L ELE L E EA qaeeyella E L A R LEQDIARLEERRRELEERL EE LEE E 324
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 84 L QA L R E G L IRQH E QEAARTAKIK E g ELQR L QATLNV L RDGAADKVKTALLTEAR EE ARRAFDG E R L RLQQEIL EL K A ARK 163
Cdd:COG1196 325 L AE L E E E L EELE E ELEELEEELE E - AEEE L EEAEAE L AEAEEALLEAEAELAEA EE ELEELAE E L L EALRAAA EL A A QLE 403
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 164 QA EEA LSN c MQADKTKAADLRAAYQAHQD E VHRIKR E C E RDIRRLMD E IKGKDRVIL AL EKE L GVQAGQTQK L LLQKEA L 243
Cdd:COG1196 404 EL EEA EEA - LLERLERLEEELEELEEALA E LEEEEE E E E EALEEAAE E EAELEEEEE AL LEL L AELLEEAAL L EAALAE L 482
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 244 D E Q L VQVKEAERHHSSPKRELPPGIGDMVELMGVQDQHMDERD V RRFQLKI A ELNSVIRKLE -------- DRNTLL A DER 315
Cdd:COG1196 483 L E E L AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA V AVLIGVE A AYEAALEAAL aaalqniv VEDDEV A AAA 562
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 316 N E L LK RSRETEVQLK PL vek N K RMNKKNEDLLQSIQRMEEKIKNLTRENV E MKEKLSAQASLKRHTS L NDLS L TRDEQEI 395
Cdd:COG1196 563 I E Y LK AAKAGRATFL PL --- D K IRARAALAAALARGAIGAAVDLVASDLR E ADARYYVLGDTLLGRT L VAAR L EAALRRA 639
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 396 EF L RLQVL E QQHVIDDL S LERERLLR S K R HRGKS L KPPKKHVV E tffg FD E ESVDS E TLS E TSYNTDRTDRTPATPE E DL 475
Cdd:COG1196 640 VT L AGRLR E VTLEGEGG S AGGSLTGG S R R ELLAA L LEAEAELE E ---- LA E RLAEE E LEL E EALLAEEEEERELAEA E EE 715
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622937715 476 DDTTAR EE AD L RFCQLTREYQA L QRAYALLQEQVGGT L DAER E ARTR E Q L QAD L L R CQAK IE D L EK 541
Cdd:COG1196 716 RLEEEL EE EA L EEQLEAEREEL L EELLEEEELLEEEA L EELP E PPDL E E L ERE L E R LERE IE A L GP 781
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
44-605
7.94e-08
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 56.10
E-value: 7.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 44 VG K LR ER LQ EA KLER E QEQR --- R HTAYIS EL KAK L HE ----- EK TKELQA L R E G L IRQHEQEAARTAKIK E G EL QR L Q A 115
Cdd:COG1196 167 IS K YK ER KE EA ERKL E ATEE nle R LEDILG EL ERQ L EP lerqa EK AERYRE L K E E L KELEAELLLLKLREL E A EL EE L E A 246
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 116 T L NV L RDGAADKVKTALLT EA RE E AR R A fdg E RLR L QQ E IL E LK A ARKQAEEA L SNC --- MQADKTKAAD L RAAYQAHQD 192
Cdd:COG1196 247 E L EE L EAELEELEAELAEL EA EL E EL R L --- E LEE L EL E LE E AQ A EEYELLAE L ARL eqd IARLEERRRE L EERLEELEE 323
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 193 E VHRIKR E C E RDIRR L MDEIKGKDRVILA LE KELGVQ A GQTQK LL LQKEA L D E QLVQVK E AERHHSSPK R E lppgigdmv 272
Cdd:COG1196 324 E LAELEE E L E ELEEE L EELEEELEEAEEE LE EAEAEL A EAEEA LL EAEAE L A E AEEELE E LAEELLEAL R A --------- 394
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 273 ELMGVQDQHMD E RDVRRFQLKIAE L NSVIRK LE DRNTL L AD E RN E LLKRSR E TEVQLKP L V E KNKRMNKKNED LL QSIQR 352
Cdd:COG1196 395 AAELAAQLEEL E EAEEALLERLER L EEELEE LE EALAE L EE E EE E EEEALE E AAEEEAE L E E EEEALLELLAE LL EEAAL 474
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 353 M E EKIKN L TR E NV E MKEK L SAQASLKRHTSLNDLSLTRDEQEIEF ---------------------- LR L QVLE Q QH V ID 410
Cdd:COG1196 475 L E AALAE L LE E LA E AAAR L LLLLEAEADYEGFLEGVKAALLLAGL rglagavavligveaayeaale AA L AAAL Q NI V VE 554
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 411 D LSLERERLLRS K RHRG ----------- KSLKPPKKHVVETFF G FDEES V D S ETLSETSYNTDRT D RTPATPEEDLDDTT 479
Cdd:COG1196 555 D DEVAAAAIEYL K AAKA gratflpldki RARAALAAALARGAI G AAVDL V A S DLREADARYYVLG D TLLGRTLVAARLEA 634
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 480 A REE A --- DL R FCQL T R E YQALQRAYA L LQEQVGGT L D A ER EA RTREQLQ A DL L RCQAKIEDLEK L LV E KGQDSKWVE E K 556
Cdd:COG1196 635 A LRR A vtl AG R LREV T L E GEGGSAGGS L TGGSRREL L A A LL EA EAELEEL A ER L AEEELELEEAL L AE E EEERELAEA E E 714
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1622937715 557 QL L IRTNQDLLEKIYRLEME E NQ L KNEMQDAKDQN E LLEFRVL E LEER E 605
Cdd:COG1196 715 ER L EEELEEEALEEQLEAER E EL L EELLEEEELLE E EALEELP E PPDL E 763
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
158-777
4.67e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 53.79
E-value: 4.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 158 L KAARKQ AE EA lsncm QAD K TKAAD L R A AYQAHQD evhrik RE C E RDIRR L MD E IKGKDRVILA LE K EL GVQAGQTQK L L 237
Cdd:COG1196 205 L ERQAEK AE RY ----- REL K EELKE L E A ELLLLKL ------ RE L E AELEE L EA E LEELEAELEE LE A EL AELEAELEE L R 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 238 L QK E A L DEQ L VQVKEA E RHHSSPKRE L ppgigdmvelmg V QD QHMD E RDV R RFQLKIA EL NSVIRK LE DRNTL L AD E RN E 317
Cdd:COG1196 274 L EL E E L ELE L EEAQAE E YELLAELAR L ------------ E QD IARL E ERR R ELEERLE EL EEELAE LE EELEE L EE E LE E 341
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 318 L LKRSR E T E VQ L K plv E KNKRMNKKN E D LL QSIQRME E KIKN L TRENV E MK E K L S A Q A S L KRHTSLNDLSLTRDEQEI E F 397
Cdd:COG1196 342 L EEELE E A E EE L E --- E AEAELAEAE E A LL EAEAELA E AEEE L EELAE E LL E A L R A A A E L AAQLEELEEAEEALLERL E R 418
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 398 L RLQVL E QQHVIDD L SL E R E RLLRSKRHRGK slkppkkhvvetffgf D E ESVDS E TLSETSYNTDRTDRTPATPEEDLDD 477
Cdd:COG1196 419 L EEELE E LEEALAE L EE E E E EEEEALEEAAE ---------------- E E AELEE E EEALLELLAELLEEAALLEAALAEL 482
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 478 TTARE EA DL R fcqltre YQA L QR A Y A LLQEQVG G TLD A ERE A RT R E ------ Q L QADLLRCQ A KI E DLEKLLVEKGQDSK 551
Cdd:COG1196 483 LEELA EA AA R ------- LLL L LE A E A DYEGFLE G VKA A LLL A GL R G lagava V L IGVEAAYE A AL E AALAAALQNIVVED 555
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 552 WVEEKQLLIRTNQDLLEKIYR L EMEENQLKNEMQD A KDQNELLEFRV L ELEERERRSPAFNLQIT T FPENNSS A LQ L FCH 631
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRATF L PLDKIRARAALAA A LARGAIGAAVD L VASDLREADARYYVLGD T LLGRTLV A AR L EAA 635
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 632 QEGVKDVNVSELMKK L DIL G DNGNLRNEEQVAIIQAGTV L AL cekwl KQIEGTE A ALTQKMLDLEK E KKIQDL E ATLYT A 711
Cdd:COG1196 636 LRRAVTLAGRLREVT L EGE G GSAGGSLTGGSRRELLAAL L EA ----- EAELEEL A ERLAEEELELE E ALLAEE E EEREL A 710
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622937715 712 LQQ E pg R R AG E A L S E GQR E DLQA A VEKVRRQI L RQSR E FDSQILR E RMEL --- L QQAQQRIRE LE DKL E 777
Cdd:COG1196 711 EAE E -- E R LE E E L E E EAL E EQLE A EREELLEE L LEEE E LLEEEAL E ELPE ppd L EELERELER LE REI E 777
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
6-363
9.72e-07
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 52.76
E-value: 9.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 6 R S KGEKP E MET D AVQMANEELRA K LTS I QI E FQ Q EKSKVG KL R ERL Q E AKLEREQEQRRHTAYI SELK aklhe E KTKELQ 85
Cdd:TIGR02169 694 Q S ELRRI E NRL D ELSQELSDASR K IGE I EK E IE Q LEQEEE KL K ERL E E LEEDLSSLEQEIENVK SELK ----- E LEARIE 768
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 86 A L R E G L IRQH E QEAART A KIKEGELQRL QA T L NV L RDGAADKVKTALLT E AREEAR ---- RAFDG E RLR LQ QEILE LK AA 161
Cdd:TIGR02169 769 E L E E D L HKLE E ALNDLE A RLSHSRIPEI QA E L SK L EEEVSRIEARLREI E QKLNRL tlek EYLEK E IQE LQ EQRID LK EQ 848
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 162 R K QA E EALS N cmqa DKT K AAD L RAAYQAHQDEV hrikrecerdi R R L MDEIKGKDRVILA LE KE L GVQAGQTQK L LL Q K E 241
Cdd:TIGR02169 849 I K SI E KEIE N ---- LNG K KEE L EEELEELEAAL ----------- R D L ESRLGDLKKERDE LE AQ L RELERKIEE L EA Q I E 913
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 242 ALDEQ L VQV K EAERHHSSPKR E LPPGI G DMV E lmg VQDQHMDER DV rrf Q LKIAELNSV IR K LE DR N T L LAD E RN E L LKR 321
Cdd:TIGR02169 914 KKRKR L SEL K AKLEALEEELS E IEDPK G EDE E --- IPEEELSLE DV --- Q AELQRVEEE IR A LE PV N M L AIQ E YE E V LKR 987
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1622937715 322 sretevq L KP L V EK NKRMNKKNEDL L QS I QRM E E K IKNLTR E 363
Cdd:TIGR02169 988 ------- L DE L K EK RAKLEEERKAI L ER I EEY E K K KREVFM E 1022
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
56-363
4.50e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 50.44
E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 56 LER EQ E QRRHTAY I S EL KA K LH E e KT K E L QA LR EG L ir QHEQ E AARTAKIKEG EL Q R L qatlnv LRDGAA D KVKTALLT E 135
Cdd:TIGR02168 673 LER RR E IEELEEK I E EL EE K IA E - LE K A L AE LR KE L -- EELE E ELEQLRKELE EL S R Q ------ ISALRK D LARLEAEV E 743
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 136 AR EE ARRAFDG E RLR L QQ EI L EL KAARKQ AEE A L sncm QADKTKAAD L R A AYQAHQD E V --- HRIKR E CERDIRR L MD E I 212
Cdd:TIGR02168 744 QL EE RIAQLSK E LTE L EA EI E EL EERLEE AEE E L ---- AEAEAEIEE L E A QIEQLKE E L kal REALD E LRAELTL L NE E A 819
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 213 KGKDRVILA LE KELGVQAGQTQK L LL Q K E A L D E QLVQVKEAERHHSSPKR EL PPGIGDMVELMGVQDQHMDERDVRRFQ L 292
Cdd:TIGR02168 820 ANLRERLES LE RRIAATERRLED L EE Q I E E L S E DIESLAAEIEELEELIE EL ESELEALLNERASLEEALALLRSELEE L 899
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622937715 293 -- KIA EL N S VIRK L EDRNTL L ADERNE L LK R SRET EV QLKP L V E knk R MNKKNEDL L QSIQRM E E KI KNLTR E 363
Cdd:TIGR02168 900 se ELR EL E S KRSE L RRELEE L REKLAQ L EL R LEGL EV RIDN L Q E --- R LSEEYSLT L EEAEAL E N KI EDDEE E 969
SMC_N
pfam02463 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
42-789
5.66e-06
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain]
Cd Length: 1161
Bit Score: 50.36
E-value: 5.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 42 S KVGKLRERLQEAKL E REQEQRRHTAYIS ELK AKLHEE K TKELQ AL REGLIRQHEQEAARTAKIKE g E L QRLQATLNV L R 121
Cdd:pfam02463 165 S RLKRKKKEALKKLI E ETENLAELIIDLE ELK LQELKL K EQAKK AL EYYQLKEKLELEEEYLLYLD - Y L KLNEERIDL L Q 243
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 122 DGAA D KVKTALLTEARE E ARR afdg E R L RLQQEILELKAAR K QAE E ALSNCMQADKTKAADLRAAYQAHQDEVHRIKR E C 201
Cdd:pfam02463 244 ELLR D EQEEIESSKQEI E KEE ---- E K L AQVLKENKEEEKE K KLQ E EELKLLAKEEEELKSELLKLERRKVDDEEKLK E S 319
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 202 E RDIRRLMD E I K GKDRV I LA LEKEL GVQAGQTQKLLLQK E A L DEQLVQVKEA E RHHSSP K RELPPGIGDMVE L MGVQDQ h 281
Cdd:pfam02463 320 E KEKKKAEK E L K KEKEE I EE LEKEL KELEIKREAEEEEE E E L EKLQEKLEQL E EELLAK K KLESERLSSAAK L KEEELE - 398
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 282 MDERDVRRF QL KIAELNSVIRK L EDRNTLLADERN E LLKRS ---------- R E TEVQLKPLVE K NKRMN KK N EDLL QSI Q 351
Cdd:pfam02463 399 LKSEEEKEA QL LLELARQLEDL L KEEKKEELEILE E EEESI elkqgkltee K E ELEKQELKLL K DELEL KK S EDLL KET Q 478
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 352 RMEEKIKNLTRENVEMK E KL S AQA S LK R HTSLND L S L TR D EQEIEFLRLQVL -- EQQHVIDDLSLERERLLRSKRHRGKS 429
Cdd:pfam02463 479 LVKLQEQLELLLSRQKL E ER S QKE S KA R SGLKVL L A L IK D GVGGRIISAHGR lg DLGVAVENYKVAISTAVIVEVSATAD 558
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 430 LKPPKKHV V ETFFGFDEESVDSET L SETSYNTDRTDRTP --- ATPEEDLD D TTAR E EADLRFCQLTR E YQALQRAYAL L Q 506
Cdd:pfam02463 559 EVEERQKL V RALTELPLGARKLRL L IPKLKLPLKSIAVL eid PILNLAQL D KATL E ADEDDKRAKVV E GILKDTELTK L K 638
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 507 E QVGGTLDAE R EARTR E QLQ A DLLRCQ A KIED L E K L L V E KGQDSKWV E EKQLLIRTNQDL LE KI yrl EM E ENQLKNEMQD 586
Cdd:pfam02463 639 E SAKAKESGL R KGVSL E EGL A EKSEVK A SLSE L T K E L L E IQELQEKA E SELAKEEILRRQ LE IK --- KK E QREKEELKKL 715
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 587 AKDQN ELL EF RV L E LEERERRSPAFNL Q ITTFP E NNSSALQ L FCHQEGVKDVNV S ELM K K L DILGDNGNLRNE E QVAIIQ 666
Cdd:pfam02463 716 KLEAE ELL AD RV Q E AQDKINEELKLLK Q KIDEE E EEEEKSR L KKEEKEEEKSEL S LKE K E L AEEREKTEKLKV E EEKEEK 795
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 667 AGTVLALCEKWLKQIEGTEAA L TQKM L DL E K E K KI QDL E ATLYTALQQ E PGRRAGE A LS E GQ R EDLQAAV E KVRRQI L RQ 746
Cdd:pfam02463 796 LKAQEEELRALEEELKEEAEL L EEEQ L LI E Q E E KI KEE E LEELALELK E EQKLEKL A EE E LE R LEEEITK E ELLQEL L LK 875
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 1622937715 747 SR E FDS Q I L RERM E LLQQAQQRIRELEDKLEFQKRH L K E L E EK 789
Cdd:pfam02463 876 EE E LEE Q K L KDEL E SKEEKEKEEKKELEEESQKLNL L E E K E NE 918
PTZ00121
PTZ00121 MAEBL; Provisional
38-246
2.50e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 48.21
E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 38 QQ E KS K VGK LR ERLQEA K L E REQEQRRHTA Y IS E L K A K LH E E K TK E LQALREGLIRQH E Q E AARTAKI K EG E LQRLQATL 117
Cdd:PTZ00121 1571 KA E ED K NMA LR KAEEAK K A E EARIEEVMKL Y EE E K K M K AE E A K KA E EAKIKAEELKKA E E E KKKVEQL K KK E AEEKKKAE 1650
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 118 NVLRDGAAD K V K T A LLTEAR EE ARRAFDGERLRLQQ E ILELK A AR K Q AEEA ----- L SNCMQAD K T KA AD L RA A YQAHQD 192
Cdd:PTZ00121 1651 ELKKAEEEN K I K A A EEAKKA EE DKKKAEEAKKAEED E KKAAE A LK K E AEEA kkaee L KKKEAEE K K KA EE L KK A EEENKI 1730
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622937715 193 EVHRI K R E C E R D IRRL ---- M DE IKG K DRVI L AL E K E LGVQAGQTQ K LLLQK E A LDE Q 246
Cdd:PTZ00121 1731 KAEEA K K E A E E D KKKA eeak K DE EEK K KIAH L KK E E E KKAEEIRKE K EAVIE E E LDE E 1788
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
18-255
2.90e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 47.07
E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 18 A VQM A NE E LR A K L TSI Q I E FQQEKSKVGK L RERLQEAKLEREQEQ RR htay I SE L KAKLHE ek TKELQ A LR E GLIRQH E Q 97
Cdd:COG4942 17 A QAD A AA E AE A E L EQL Q Q E IAELEKELAA L KKEEKALLKQLAALE RR ---- I AA L ARRIRA -- LEQEL A AL E AELAEL E K 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 98 E A A RTAKIK E GELQR L QAT L NV L - R D G AADKVKTA L LT E AREE A R R afdge RL RLQQEILE lk A A R K QAEE alsnc MQ AD 176
Cdd:COG4942 91 E I A ELRAEL E AQKEE L AEL L RA L y R L G RQPPLALL L SP E DFLD A V R ----- RL QYLKYLAP -- A R R E QAEE ----- LR AD 158
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622937715 177 KTKA A D LRA AYQ A HQD E VHRIKR E C E RDIRR L MDEIKGKDRVILA LEKEL GVQ A GQTQK L LLQK E A L DEQLVQVKEAER 255
Cdd:COG4942 159 LAEL A A LRA ELE A ERA E LEALLA E L E EERAA L EALKAERQKLLAR LEKEL AEL A AELAE L QQEA E E L EALIARLEAEAA 237
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
13-363
8.01e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 46.59
E-value: 8.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 13 E M E TDAVQMAN EEL RAKLTSIQIEFQQEKSK V GK L R ER LQEAKL E REQEQRRHTAYISE L ----- KAKLH E EKTK EL Q A L 87
Cdd:TIGR02168 711 E E E LEQLRKEL EEL SRQISALRKDLARLEAE V EQ L E ER IAQLSK E LTELEAEIEELEER L eeaee ELAEA E AEIE EL E A Q 790
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 88 R E G L IRQHEQE a ARTAKIKEG EL QR L QATLNV LR DGAADKVKTALL TE A R E E ARRA fdg ERLR L QQE I LE L K A ARKQA EE 167
Cdd:TIGR02168 791 I E Q L KEELKAL - REALDELRA EL TL L NEEAAN LR ERLESLERRIAA TE R R L E DLEE --- QIEE L SED I ES L A A EIEEL EE 866
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 168 ALSN c MQADKTKAADL RA AYQAHQDEV hrikrec ERDIRR L MD E IKGKDRVILA L EK EL GVQAGQTQK L L L QK E A L DEQL 247
Cdd:TIGR02168 867 LIEE - LESELEALLNE RA SLEEALALL ------- RSELEE L SE E LRELESKRSE L RR EL EELREKLAQ L E L RL E G L EVRI 938
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 248 VQVK E AERHHS S PKR E LPPGIGDMV E L mgvq D QHMDE R DVR R FQL KI A EL NS V irkledr N TLLAD E RN EL LK R SRETEV 327
Cdd:TIGR02168 939 DNLQ E RLSEEY S LTL E EAEALENKI E D ---- D EEEAR R RLK R LEN KI K EL GP V ------- N LAAIE E YE EL KE R YDFLTA 1007
330 340 350
....*....|....*....|....*....|....*.
gi 1622937715 328 Q LKP L veknkrm NKKN E D L LQS I QRMEEKIKNLTRE 363
Cdd:TIGR02168 1008 Q KED L ------- TEAK E T L EEA I EEIDREARERFKD 1036
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
56-791
1.90e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 45.06
E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 56 LER EQEQ R RHTAYISE L KAKLH E EKTK EL QALR E G L I RQ H E QEAART A KIK E g EL QR L QATLNV L RDGAADKVK ta LL T E 135
Cdd:TIGR02169 200 LER LRRE R EKAERYQA L LKEKR E YEGY EL LKEK E A L E RQ K E AIERQL A SLE E - EL EK L TEEISE L EKRLEEIEQ -- LL E E 276
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 136 AREEARRAFDG E R LR LQQE I L EL K A ARKQA E EALSNCMQ adkt KAA D LRAAYQAHQD E VHRIKR E C E RDI R RLMD E I K GK 215
Cdd:TIGR02169 277 LNKKIKDLGEE E Q LR VKEK I G EL E A EIASL E RSIAEKER ---- ELE D AEERLAKLEA E IDKLLA E I E ELE R EIEE E R K RR 352
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 216 D rvil A L EK E LGVQAGQTQK L LLQK E AL D EQL vqv K E AERHHSSPKRE L PPGIGDMV EL MGVQ D QHMD E R dv R R FQLKI A 295
Cdd:TIGR02169 353 D ---- K L TE E YAELKEELED L RAEL E EV D KEF --- A E TRDELKDYREK L EKLKREIN EL KREL D RLQE E L -- Q R LSEEL A 423
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 296 E LN SV I RKL E DRNTL L AD E RNELLKRSRET E VQ L KP L VEKNKRMNKKNE DL LQSIQ R M E EKIKN L T RE NV E MKEKLS A QA 375
Cdd:TIGR02169 424 D LN AA I AGI E AKINE L EE E KEDKALEIKKQ E WK L EQ L AADLSKYEQELY DL KEEYD R V E KELSK L Q RE LA E AEAQAR A SE 503
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 376 SLK R HTSLNDLS L TRDE Q EIEFLRL Q VLE ----------------- QQH V ID D LSLER E RLLRS KR HRG ----------- 427
Cdd:TIGR02169 504 ERV R GGRAVEEV L KASI Q GVHGTVA Q LGS vgeryataievaagnrl NNV V VE D DAVAK E AIELL KR RKA gratflplnkm 583
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 428 - KSLKPPKKHVVETFF GF DEES V DSETLS E TSYNTDRT D RTPA tpe ED LD dt T AR EEAD l RFCQL T R E YQALQRAY A L lq 506
Cdd:TIGR02169 584 r DERRDLSILSEDGVI GF AVDL V EFDPKY E PAFKYVFG D TLVV --- ED IE -- A AR RLMG - KYRMV T L E GELFEKSG A M -- 655
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 507 eq V GG TLDAEREARTREQLQ A D L L R CQAKI E D L EKL L vekgqdskwveekqllirtn QD L LEKIY R L E MEENQ L KN E MQ D 586
Cdd:TIGR02169 656 -- T GG SRAPRGGILFSRSEP A E L Q R LRERL E G L KRE L -------------------- SS L QSELR R I E NRLDE L SQ E LS D 713
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 587 A KDQNELL E FRVLE LE ER E RRSPA fnlqittfpennssalqlfchqegvkdv NVS EL MKK L DI L gdngnlrnee QVA I IQ 666
Cdd:TIGR02169 714 A SRKIGEI E KEIEQ LE QE E EKLKE ---------------------------- RLE EL EED L SS L ---------- EQE I EN 755
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 667 AGTV L ALC E KWLKQI E GTEAA L TQKML DLE KE ------ KK IQ DLEAT L YTALQQEPG R RAGEALSEGQREDLQAAV EK VR 740
Cdd:TIGR02169 756 VKSE L KEL E ARIEEL E EDLHK L EEALN DLE AR lshsri PE IQ AELSK L EEEVSRIEA R LREIEQKLNRLTLEKEYL EK EI 835
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1622937715 741 RQILR Q SREFDS QI -- LRERM E L L QQ aqq RIR ELE DK LE FQKRH L KE LE EKHS 791
Cdd:TIGR02169 836 QELQE Q RIDLKE QI ks IEKEI E N L NG --- KKE ELE EE LE ELEAA L RD LE SRLG 885
COG2433
COG2433 Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
186-369
1.00e-03
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain]
Cd Length: 644
Bit Score: 42.54
E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 186 AY Q A HQDEVH R IKRECER D IR R lm DE I K gkdrvilaleke LG V QA G QTQKLL L QKEALD E QLVQVK EAER HHSSPK REL P 265
Cdd:COG2433 344 AY D A YKNKFE R VEKKVPP D VD R -- DE V K ------------ AR V IR G LSIEEA L EELIEK E LPEEEP EAER EKEHEE REL T 409
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 266 PGIGDMVE L MGVQDQHMD E rd V RRFQLKIA E LNSV I RK LE DRNTLLAD E RNELLKRS RE T evqlkplvekn K R MNKKN E D 345
Cdd:COG2433 410 EEEEEIRR L EEQVERLEA E -- V EELEAELE E KDER I ER LE RELSEARS E ERREIRKD RE I ----------- S R LDREI E R 476
170 180
....*....|....*....|....
gi 1622937715 346 L LQSIQRME E K I KN L T R ENVEM KE 369
Cdd:COG2433 477 L ERELEEER E R I EE L K R KLERL KE 500
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
27-213
1.75e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 42.21
E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 27 RAKL TSIQI E FQQEKSKVGKLR ERL QEAKL E REQE Q R R HT A YISELKAKLH E EKTKELQALREG L IRQH E QEA A RTAKIK 106
Cdd:COG4913 609 RAKL AALEA E LAELEEELAEAE ERL EALEA E LDAL Q E R RE A LQRLAEYSWD E IDVASAEREIAE L EAEL E RLD A SSDDLA 688
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 107 -- E GE L QR L Q A T L NV L RDGAAD - K VKTAL L TEAR E E A RRAF D GERL RL QQ - E I L ELKAA R KQA EE ALSN cm QADKTKAAD 182
Cdd:COG4913 689 al E EQ L EE L E A E L EE L EEELDE l K GEIGR L EKEL E Q A EEEL D ELQD RL EA a E D L ARLEL R ALL EE RFAA -- ALGDAVERE 766
170 180 190
....*....|....*....|....*....|.
gi 1622937715 183 LR AAYQAHQ D EVHRIKREC E RDIR R L M DEIK 213
Cdd:COG4913 767 LR ENLEERI D ALRARLNRA E EELE R A M RAFN 797
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
491-777
1.99e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 41.97
E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 491 L TREYQA L QRAYAL LQE QV ggtlda EREARTR E Q L Q A D L LRCQA K I E D L EK llv E KGQDSKWV EE K Q lli RTNQD L LEK I 570
Cdd:TIGR02168 230 L VLRLEE L REELEE LQE EL ------ KEAEEEL E E L T A E L QELEE K L E E L RL --- E VSELEEEI EE L Q --- KELYA L ANE I 297
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 571 Y RLE MEENQ L KNEMQDAKD Q N E L LE FRVL ELE ERERRSPA fnlqittfp E NNSSALQ L FCHQ E GVKDV nv SELMKK L DIL 650
Cdd:TIGR02168 298 S RLE QQKQI L RERLANLER Q L E E LE AQLE ELE SKLDELAE --------- E LAELEEK L EELK E ELESL -- EAELEE L EAE 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 651 GDNGNL R N EE - QVAIIQAGTVL A LC E KWLKQIEGTEAA L TQKMLD LE KEKKIQDL E ATLYTALQQ E PGRRAGE A LS E G -- 727
Cdd:TIGR02168 367 LEELES R L EE l EEQLETLRSKV A QL E LQIASLNNEIER L EARLER LE DRRERLQQ E IEELLKKLE E AELKELQ A EL E E le 446
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1622937715 728 - QR E D LQ AAV E KVRRQ -- I LR QSR E FDS Q I L RERMEL L Q Q A Q Q R IRE LE DKL E 777
Cdd:TIGR02168 447 e EL E E LQ EEL E RLEEA le E LR EEL E EAE Q A L DAAERE L A Q L Q A R LDS LE RLQ E 499
DUF5401
pfam17380 Family of unknown function (DUF5401); This is a family of unknown function found in ...
8-225
2.08e-03
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain]
Cd Length: 722
Bit Score: 41.65
E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 8 K G E KPEMETDAVQ M ANEEL R a K L TSI Q I E F QQ EKSK V GKLR E RLQEA K LER E QE QR R htay I SEL K AKLHEEKTKELQ A L 87
Cdd:pfam17380 359 K R E LERIRQEEIA M EISRM R - E L ERL Q M E R QQ KNER V RQEL E AARKV K ILE E ER QR K ---- I QQQ K VEMEQIRAEQEE A R 433
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 88 REGLI R QH E QE A ARTAKIKEG E LQ R L Q ATLNVLRDGAAD K V K TAL L TEAREEAR RA FDGE R LR L QQ E IL E L K A A --- RKQ 164
Cdd:pfam17380 434 QREVR R LE E ER A REMERVRLE E QE R Q Q QVERLRQQEEER K R K KLE L EKEKRDRK RA EEQR R KI L EK E LE E R K Q A mie EER 513
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622937715 165 AEEA L SNC M QADKTKAADLRAAYQ A HQDEVHRIKR E CE R D I RRL M DEIKGKDRVIL A L E K E 225
Cdd:pfam17380 514 KRKL L EKE M EERQKAIYEEERRRE A EEERRKQQEM E ER R R I QEQ M RKATEERSRLE A M E R E 574
PRK10929
PRK10929 putative mechanosensitive channel protein; Provisional
28-253
2.37e-03
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain]
Cd Length: 1109
Bit Score: 41.58
E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 28 A K LT SI Q I E FQQE K SK V GK L R er L QEAKLERE QE QR R HTA yis EL KA K LHEEKTKE LQALR EG L IR Q HEQ EA ---- AR T A 103
Cdd:PRK10929 173 A Q LT AL Q A E SAAL K AL V DE L E -- L AQLSANNR QE LA R LRS --- EL AK K RSQQLDAY LQALR NQ L NS Q RQR EA eral ES T E 247
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 104 KIK E -- G E L ---------------------- QR LQATLNVL R DG A AD -- K V KT AL L T e A RE EARRAFD ---- GE R LR L Q - 152
Cdd:PRK10929 248 LLA E qs G D L pksivaqfkinrelsqalnqqa QR MDLIASQQ R QA A SQ tl Q V RQ AL N T - L RE QSQWLGV snal GE A LR A Q v 326
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 153 ------------- Q E ILE L KAA R KQA E EA L SNCM Q ADKTKA AD --- L R A AYQAHQ D EVH R IK RE C erdirr L MDEIK G K D 216
Cdd:PRK10929 327 arlpempkpqqld T E MAQ L RVQ R LRY E DL L NKQP Q LRQIRQ AD gqp L T A EQNRIL D AQL R TQ RE L ------ L NSLLS G G D 400
250 260 270
....*....|....*....|....*....|....*..
gi 1622937715 217 RV IL A L E K e L G V QAG Q tqklllqkea L DEQ L VQ V K EA 253
Cdd:PRK10929 401 TL IL E L T K - L K V ANS Q ---------- L EDA L KE V N EA 426
COG2433
COG2433 Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
297-428
2.69e-03
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain]
Cd Length: 644
Bit Score: 41.38
E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 297 LNSVIRK L EDR nt L L AD E RN E LLKRSRET E VQ L KPLV E KNK R MNKKN E D L LQSIQRM E EKIKNLTRENVEMKEK LS AQA S 376
Cdd:COG2433 378 IEEALEE L IEK -- E L PE E EP E AEREKEHE E RE L TEEE E EIR R LEEQV E R L EAEVEEL E AELEEKDERIERLERE LS EAR S 455
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1622937715 377 LK R HTSLN D LSLT R DEQ EIE F L RLQVL E QQHV I DD L SLER ERL -- L RSKR H R G K 428
Cdd:COG2433 456 EE R REIRK D REIS R LDR EIE R L ERELE E ERER I EE L KRKL ERL ke L WKLE H S G E 509
PTZ00121
PTZ00121 MAEBL; Provisional
2-348
3.39e-03
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 41.28
E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 2 S KK GRSKGE K P E METD A VQMANE E LRA K LTSIQIEFQQE K SKVG K LR E R L QE A KLEREQ E QRRHTAYISELKAKLH EE KT 81
Cdd:PTZ00121 1508 A KK KADEAK K A E EAKK A DEAKKA E EAK K ADEAKKAEEKK K ADEL K KA E E L KK A EEKKKA E EAKKAEEDKNMALRKA EE AK 1587
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 82 K ELQ A LR E GLIRQH E Q E AART A - KI K EG E LQRLQ A T l NVLRDGAAD K VKTA L LTEAR EE ARR A fdg E R L RLQQ E ILEL KA 160
Cdd:PTZ00121 1588 K AEE A RI E EVMKLY E E E KKMK A e EA K KA E EAKIK A E - ELKKAEEEK K KVEQ L KKKEA EE KKK A --- E E L KKAE E ENKI KA 1663
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 161 A RKQAEE alsncm QA DK T KA ADLRA A YQAHQDEVHRI K R E C E ----- RDIRRLMD E I K G K DRVILAL E K E LGVQ A GQTQ K 235
Cdd:PTZ00121 1664 A EEAKKA ------ EE DK K KA EEAKK A EEDEKKAAEAL K K E A E eakka EELKKKEA E E K K K AEELKKA E E E NKIK A EEAK K 1737
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 236 LLLQ - K EALD E QLVQVK E AERHHSSP K R E LPPGIGDMV E LMG V QDQHM DE R D VR R FQ lkia E LNSV I RKLE D RNTLLAD - 313
Cdd:PTZ00121 1738 EAEE d K KKAE E AKKDEE E KKKIAHLK K E E EKKAEEIRK E KEA V IEEEL DE E D EK R RM ---- E VDKK I KDIF D NFANIIE g 1813
330 340 350
....*....|....*....|....*....|....*..
gi 1622937715 314 -- E R N ELLKR S R E T E VQLKPL V EKN K R M NKKNE D LLQ 348
Cdd:PTZ00121 1814 gk E G N LVIND S K E M E DSAIKE V ADS K N M QLEEA D AFE 1850
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
22-169
4.77e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 40.67
E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 22 AN E E LRA K L TS -- I Q IEFQQEKSKVGK LR E --- RL QEAKLER E QEQRRHTAYIS EL K A KLHEEKTKE L QA L RE g L I RQH E 96
Cdd:COG4913 273 EL E Y LRA A L RL wf A Q RRLELLEAELEE LR A ela RL EAELERL E ARLDALREELD EL E A QIRGNGGDR L EQ L ER - E I ERL E 351
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622937715 97 Q E AAR taki K E GELQ RL Q A T L NV L rd G AADKVKTALLTEA R E EA RR --- A FDG E RLR L QQEIL E LK AA RKQAEEA L 169
Cdd:COG4913 352 R E LEE ---- R E RRRA RL E A L L AA L -- G LPLPASAEEFAAL R A EA AA lle A LEE E LEA L EEALA E AE AA LRDLRRE L 421
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
24-199
6.36e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 40.28
E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 24 E EL RAKLTSIQIE F Q Q EKSKVGKLRERLQE A K L E R EQEQRR htayiselkak LH E EKTKE L QALREG L IR Q HEQEAARTA 103
Cdd:COG4913 272 A EL EYLRAALRLW F A Q RRLELLEAELEELR A E L A R LEAELE ----------- RL E ARLDA L REELDE L EA Q IRGNGGDRL 340
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 104 KIK E G E LQ RL QAT L N v L R DGAADKVKTA L -- L TEAREEARRA F dger LR L QQ E ILE L KA A RKQAE EAL SNCMQADKTKAA 181
Cdd:COG4913 341 EQL E R E IE RL ERE L E - E R ERRRARLEAL L aa L GLPLPASAEE F ---- AA L RA E AAA L LE A LEEEL EAL EEALAEAEAALR 415
170
....*....|....*...
gi 1622937715 182 DLR AAYQAHQD E VHRIK R 199
Cdd:COG4913 416 DLR RELRELEA E IASLE R 433
GumC
COG3206 Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
23-246
9.35e-03
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain]
Cd Length: 687
Bit Score: 39.61
E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 23 N E ELR AKLTSIQI EF QQ E K sk VGK LR ER L Q EA KLER E QEQRRHTAYISELK AKL HEEKTK EL QALREGLIRQHEQEA AR T 102
Cdd:COG3206 165 N L ELR REEARKAL EF LE E Q -- LPE LR KE L E EA EAAL E EFRQKNGLVDLSEE AKL LLQQLS EL ESQLAEARAELAEAE AR L 242
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622937715 103 A KIK egel QR L QATLNV L RDGAADK V KTA L LTE a RE E ARRAFDGERL R LQQEILELK A A R K Q AEEALSNCM Q ADKTKA A D 182
Cdd:COG3206 243 A ALR ---- AQ L GSGPDA L PELLQSP V IQQ L RAQ - LA E LEAELAELSA R YTPNHPDVI A L R A Q IAALRAQLQ Q EAQRIL A S 317
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622937715 183 L R A AYQ A H Q DEVHRIKRE c ERDIRRLMD E IKGKDRVILA LE K E LG V QAGQTQK LL LQK E ALDEQ 246
Cdd:COG3206 318 L E A ELE A L Q AREASLQAQ - LAQLEARLA E LPELEAELRR LE R E VE V ARELYES LL QRL E EARLA 380
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
