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Conserved domains on  [gi|1622826270|ref|XP_028703124|]
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DNA-directed RNA polymerase III subunit RPC3 isoform X3 [Macaca mulatta]

Protein Classification

RNA_pol_Rpc82 domain-containing protein( domain architecture ID 10529073)

RNA_pol_Rpc82 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RNA_pol_Rpc82 pfam05645
RNA polymerase III subunit RPC82; This family consists of several DNA-directed RNA polymerase ...
62-261 1.19e-45

RNA polymerase III subunit RPC82; This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae, the enzyme is composed of 15 subunits, ranging from 160 to about 10 kDa.


:

Pssm-ID: 398977  Cd Length: 233  Bit Score: 158.02  E-value: 1.19e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270  62 NTFVRLADTHFVQRCPSV--------------PTTENSDPGPPPPAPTLVINEK--------DMYLVPKLSLIGkgkrRR 119
Cdd:pfam05645   1 ETFVKLVEAGFLIRVPKFhfrpipdlwnqlyeEHLKSTPRSSTTSEIKRRAEAKvkaktelrDLRESPEILLRG----RR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270 120 SSDEDAAGEPKAKRPkhttdnkepiPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAP 199
Cdd:pfam05645  77 GSLADTTDNGTGKKR----------LDPGLVWRVNLERFHKHLRDEALVDLVKSRIGSTTAEVYRAALRLSESRTPPCSA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270 200 F-----TQPLSSNEIFRSLPVGYNISK--------------------QVLDQYLTLLADDPLEFVGKSGDSGGGMYVINL 254
Cdd:pfam05645 147 PlvddpSITFTANDIARALPKSLDLSMsigkrssnssqsapkkeeslSLLDQHLKLLASDPLPFLREIGPSGGGQYTVDF 226

                  ....*..
gi 1622826270 255 HKALASL 261
Cdd:pfam05645 227 SRLIEQL 233
 
Name Accession Description Interval E-value
RNA_pol_Rpc82 pfam05645
RNA polymerase III subunit RPC82; This family consists of several DNA-directed RNA polymerase ...
62-261 1.19e-45

RNA polymerase III subunit RPC82; This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae, the enzyme is composed of 15 subunits, ranging from 160 to about 10 kDa.


Pssm-ID: 398977  Cd Length: 233  Bit Score: 158.02  E-value: 1.19e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270  62 NTFVRLADTHFVQRCPSV--------------PTTENSDPGPPPPAPTLVINEK--------DMYLVPKLSLIGkgkrRR 119
Cdd:pfam05645   1 ETFVKLVEAGFLIRVPKFhfrpipdlwnqlyeEHLKSTPRSSTTSEIKRRAEAKvkaktelrDLRESPEILLRG----RR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270 120 SSDEDAAGEPKAKRPkhttdnkepiPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAP 199
Cdd:pfam05645  77 GSLADTTDNGTGKKR----------LDPGLVWRVNLERFHKHLRDEALVDLVKSRIGSTTAEVYRAALRLSESRTPPCSA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270 200 F-----TQPLSSNEIFRSLPVGYNISK--------------------QVLDQYLTLLADDPLEFVGKSGDSGGGMYVINL 254
Cdd:pfam05645 147 PlvddpSITFTANDIARALPKSLDLSMsigkrssnssqsapkkeeslSLLDQHLKLLASDPLPFLREIGPSGGGQYTVDF 226

                  ....*..
gi 1622826270 255 HKALASL 261
Cdd:pfam05645 227 SRLIEQL 233
 
Name Accession Description Interval E-value
RNA_pol_Rpc82 pfam05645
RNA polymerase III subunit RPC82; This family consists of several DNA-directed RNA polymerase ...
62-261 1.19e-45

RNA polymerase III subunit RPC82; This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae, the enzyme is composed of 15 subunits, ranging from 160 to about 10 kDa.


Pssm-ID: 398977  Cd Length: 233  Bit Score: 158.02  E-value: 1.19e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270  62 NTFVRLADTHFVQRCPSV--------------PTTENSDPGPPPPAPTLVINEK--------DMYLVPKLSLIGkgkrRR 119
Cdd:pfam05645   1 ETFVKLVEAGFLIRVPKFhfrpipdlwnqlyeEHLKSTPRSSTTSEIKRRAEAKvkaktelrDLRESPEILLRG----RR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270 120 SSDEDAAGEPKAKRPkhttdnkepiPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAP 199
Cdd:pfam05645  77 GSLADTTDNGTGKKR----------LDPGLVWRVNLERFHKHLRDEALVDLVKSRIGSTTAEVYRAALRLSESRTPPCSA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826270 200 F-----TQPLSSNEIFRSLPVGYNISK--------------------QVLDQYLTLLADDPLEFVGKSGDSGGGMYVINL 254
Cdd:pfam05645 147 PlvddpSITFTANDIARALPKSLDLSMsigkrssnssqsapkkeeslSLLDQHLKLLASDPLPFLREIGPSGGGQYTVDF 226

                  ....*..
gi 1622826270 255 HKALASL 261
Cdd:pfam05645 227 SRLIEQL 233
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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