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Conserved domains on  [gi|1622826040|ref|XP_028702077|]
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NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform X1 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
77-463 0e+00

NADH-quinone oxidoreductase subunit D;


:

Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 742.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVE 156
Cdd:PRK06075    4 IRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 157 KLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDL 236
Cdd:PRK06075   84 KLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 237 PLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDF 316
Cdd:PRK06075  164 PDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDF 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 317 DVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKM--PPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPG 394
Cdd:PRK06075  244 DVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAG 323
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622826040 395 ATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:PRK06075  324 EVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
 
Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
77-463 0e+00

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 742.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVE 156
Cdd:PRK06075    4 IRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 157 KLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDL 236
Cdd:PRK06075   84 KLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 237 PLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDF 316
Cdd:PRK06075  164 PDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDF 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 317 DVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKM--PPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPG 394
Cdd:PRK06075  244 DVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAG 323
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622826040 395 ATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:PRK06075  324 EVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
78-463 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 713.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  78 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEK 157
Cdd:COG0649     5 EEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAVEK 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 158 LLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLP 237
Cdd:COG0649    85 LLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRDLP 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 238 LGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFD 317
Cdd:COG0649   165 DGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELDFD 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATY 397
Cdd:COG0649   245 VPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAGEVY 324
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622826040 398 TAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:COG0649   325 AAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
78-463 0e+00

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 642.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  78 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEK 157
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 158 LLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLP 237
Cdd:TIGR01962  81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 238 LGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFD 317
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATY 397
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622826040 398 TAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-463 0e+00

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 531.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 194 LGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTI 273
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 274 DIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPP 353
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 354 GEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 1622826040 434 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
 
Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
77-463 0e+00

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 742.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVE 156
Cdd:PRK06075    4 IRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 157 KLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDL 236
Cdd:PRK06075   84 KLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 237 PLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDF 316
Cdd:PRK06075  164 PDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDF 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 317 DVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKM--PPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPG 394
Cdd:PRK06075  244 DVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAG 323
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622826040 395 ATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:PRK06075  324 EVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
78-463 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 713.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  78 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEK 157
Cdd:COG0649     5 EEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAVEK 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 158 LLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLP 237
Cdd:COG0649    85 LLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRDLP 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 238 LGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFD 317
Cdd:COG0649   165 DGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELDFD 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATY 397
Cdd:COG0649   245 VPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAGEVY 324
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622826040 398 TAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:COG0649   325 AAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
78-463 0e+00

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 642.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  78 KNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEK 157
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 158 LLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLP 237
Cdd:TIGR01962  81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 238 LGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFD 317
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATY 397
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622826040 398 TAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-463 0e+00

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 531.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 194 LGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTI 273
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 274 DIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPP 353
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 354 GEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLA 433
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 1622826040 434 GLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
PRK12322 PRK12322
NADH-quinone oxidoreductase subunit D;
80-463 1.78e-152

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 183437 [Multi-domain]  Cd Length: 366  Bit Score: 437.60  E-value: 1.78e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  80 MTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLL 159
Cdd:PRK12322    7 MLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMM 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 160 NIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLG 239
Cdd:PRK12322   87 GLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDG 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 240 LMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVP 319
Cdd:PRK12322  167 WIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIP 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 320 VGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPP-GEIKvddAKVspPKraemktsmesLIhhfklytegyQVPPGATYT 398
Cdd:PRK12322  247 VGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPKeGPVL---AKV--PK----------II----------KAPKGEAYV 301
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622826040 399 AIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:PRK12322  302 RIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
80-463 2.03e-144

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 424.72  E-value: 2.03e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  80 MTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLL 159
Cdd:PRK11742  192 MFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVLAVEKLA 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 160 NIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLG 239
Cdd:PRK11742  272 GITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVAHDLPRG 351
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 240 LMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVP 319
Cdd:PRK11742  352 WDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFEVP 431
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 320 VGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTA 399
Cdd:PRK11742  432 VGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQM 511
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622826040 400 IEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:PRK11742  512 IEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 575
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
62-463 5.92e-144

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 430.74  E-value: 5.92e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  62 KPPPWNDM--DPPKDTMVknmtLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRL 139
Cdd:PRK13292  389 QPLPAGDFfdRVDEETLI----LNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRI 464
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 140 DYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSG 219
Cdd:PRK13292  465 DYLAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITG 544
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 220 ARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQ 299
Cdd:PRK13292  545 GRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLA 624
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 300 WDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLI 379
Cdd:PRK13292  625 WDLRKKMPYGGYDRFDFEVPTAEGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYVLPQKRDTLKDIESLI 704
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 380 HHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFG 459
Cdd:PRK13292  705 HHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLVADFLAIIGSIDFVLA 784

                  ....
gi 1622826040 460 EVDR 463
Cdd:PRK13292  785 DLDR 788
PRK07415 PRK07415
NAD(P)H-quinone oxidoreductase subunit H; Validated
74-463 5.27e-120

NAD(P)H-quinone oxidoreductase subunit H; Validated


Pssm-ID: 180969 [Multi-domain]  Cd Length: 394  Bit Score: 355.97  E-value: 5.27e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  74 DTMVKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSL 153
Cdd:PRK07415    5 ETRTEPMVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVN 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 154 AVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARM-HAAYIRPGGV 232
Cdd:PRK07415   85 APEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLiNNNYFRIGGV 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 233 HQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYD 312
Cdd:PRK07415  165 AADLPYGWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 313 QVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKvsppKRAEMKTS-MESLIHHF--KLYTEGY 389
Cdd:PRK07415  245 DFDWDVAWETEGDCLARYRVRIEEMRESVKIIRQACKGIPGGPYENLEAK----RMAEGKKSeWNGFDYQYvaKKVAPTF 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622826040 390 QVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:PRK07415  321 KIPNGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
ndhH CHL00017
NADH dehydrogenase subunit 7
73-463 1.80e-111

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 334.36  E-value: 1.80e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  73 KDTMVKNMtlnfGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYS 152
Cdd:CHL00017    8 KDLMIVNM----GPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 153 LAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGV 232
Cdd:CHL00017   84 NAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGV 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 233 HQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYD 312
Cdd:CHL00017  164 AADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYD 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 313 QVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMEsliHHF--KLYTEGYQ 390
Cdd:CHL00017  244 EFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFE---YRFisKKPSPTFE 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622826040 391 VPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Cdd:CHL00017  321 LSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
12-453 4.94e-93

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 289.95  E-value: 4.94e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  12 GVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAqqfggavMYPSKETAHWKPPPWNDMDPPKDTMV----KNMTLNFGPQ 87
Cdd:COG3261    58 AAARRERARERLGGEEGGGPPRRRLLLPDGWPP-------LPPPPLRPPPPPRGPPPPPPEEPEMKvegeGVHEIPVGPV 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040  88 HPAAH--GVLRLVMElsGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRldyVSMMC---NEQAYSLAVEKLLNIR 162
Cdd:COG3261   131 HAGLIepGHFRFSVE--GERILDLEIRLGYVHRGIEKLAEGRDYEQALYLAER---ICGICsvaHALAYCQAVEKAAGIE 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 163 PPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMD 242
Cdd:COG3261   206 VPPRAQYLRVILLELERIHSHLLDLGALANDVGFETLFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPEQLK 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 243 DIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGS 322
Cdd:COG3261   286 AILERLDELEEEVKELVDLFLNDPSVLDRLVGTGVLSKEDARDLGAVGPVARASGVDRDVRRDHPYAAYDELDFKVVTET 365
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622826040 323 RGDCYDRYLCRVEEMRQSLRIIVQCLNKMPPGEIKVddakvsPPKRAemktsmeslihhfklytegyqVPPGATYTAIEA 402
Cdd:COG3261   366 EGDVYARALVRLEEIFESLDLIRQALEKLPEGPIRV------PVPGL---------------------PPDGEGLGRVEA 418
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1622826040 403 PKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGT 453
Cdd:COG3261   419 PRGELVHYVRTDGDGRLERVKIRTPSFANWPALELALRGNIVADFPLINKS 469
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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