endoribonuclease YbeY isoform X3 [Macaca mulatta]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| PRK13963 super family | cl46897 | rRNA maturation RNase YbeY; |
29-91 | 2.40e-18 | ||
rRNA maturation RNase YbeY; The actual alignment was detected with superfamily member TIGR00043: Pssm-ID: 481237 [Multi-domain] Cd Length: 110 Bit Score: 76.53 E-value: 2.40e-18
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| Name | Accession | Description | Interval | E-value | ||
| TIGR00043 | TIGR00043 | rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member ... |
29-91 | 2.40e-18 | ||
rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other] Pssm-ID: 272871 [Multi-domain] Cd Length: 110 Bit Score: 76.53 E-value: 2.40e-18
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| YbeY | pfam02130 | Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in ... |
32-91 | 2.28e-09 | ||
Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. It acts together with the RNase R to eliminate defective 70S ribosomes, but not properly maturated 70S ribosomes or individual subunits, by a process mediated specifically by the 30S ribosomal subunit. It is involved in the processing of 16S, 23S and 5S rRNAs, with a particularly strong effect on maturation at both the 5'-and 3'-ends of 16S rRNA as well as maturation of the 5'-end of 23S and 5S rRNAs. The crystal structure of the protein from Aquifex aeolicus showed an overall fold consisting of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Pssm-ID: 460455 Cd Length: 125 Bit Score: 53.24 E-value: 2.28e-09
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| YbeY | COG0319 | ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and ... |
32-91 | 2.65e-08 | ||
ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]; ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 440088 Cd Length: 144 Bit Score: 50.54 E-value: 2.65e-08
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| Name | Accession | Description | Interval | E-value | ||
| TIGR00043 | TIGR00043 | rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member ... |
29-91 | 2.40e-18 | ||
rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other] Pssm-ID: 272871 [Multi-domain] Cd Length: 110 Bit Score: 76.53 E-value: 2.40e-18
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| YbeY | pfam02130 | Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in ... |
32-91 | 2.28e-09 | ||
Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. It acts together with the RNase R to eliminate defective 70S ribosomes, but not properly maturated 70S ribosomes or individual subunits, by a process mediated specifically by the 30S ribosomal subunit. It is involved in the processing of 16S, 23S and 5S rRNAs, with a particularly strong effect on maturation at both the 5'-and 3'-ends of 16S rRNA as well as maturation of the 5'-end of 23S and 5S rRNAs. The crystal structure of the protein from Aquifex aeolicus showed an overall fold consisting of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Pssm-ID: 460455 Cd Length: 125 Bit Score: 53.24 E-value: 2.28e-09
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| YbeY | COG0319 | ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and ... |
32-91 | 2.65e-08 | ||
ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]; ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 440088 Cd Length: 144 Bit Score: 50.54 E-value: 2.65e-08
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| Blast search parameters | ||||
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