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Conserved domains on  [gi|1622968836|ref|XP_028697605|]
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armadillo repeat-containing X-linked protein 2 isoform X1 [Macaca mulatta]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 12058521)

armadillo/beta-catenin-like repeat-containing protein similar to armadillo repeat-containing protein and armadillo repeat-containing X-linked protein

CATH:  1.25.10.10
Gene Ontology:  GO:0098609|GO:0005515
PubMed:  12946625|9770300|9298899|20688255
SCOP:  3000116

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arm_2 pfam04826
Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain ...
 383-601 6.58e-116

Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors.


:

Pssm-ID: 461447 [Multi-domain]  Cd Length: 221  Bit Score: 344.78  E-value: 6.58e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 383 LGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQ 462
Cdd:pfam04826   1 LEPQELDKLLALLKSSEDPFIHEIALITLGNSAAYPFNQDIIRDLGGIPIIANLLSDSNPEVKEKALNALNNLSMNVENQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 463 GRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDML 542
Cdd:pfam04826  81 KKIKVYVNQVCKDIVSSPLNSEVQLAGLKLLTNLSVTNDYHHLVVSYIRDFFSLLSQGNEKTKFQVLKVLLNLSENPAMT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622968836 543 KKLLSTQVPASFSSLYNSYVESEILINALTLFEIIYDNLRAE--VFNYREFNKGSLFYLCT 601
Cdd:pfam04826 161 RELLSAQVPSSLLSLFNSKEAKENLLRALTIFENINFHLKKEakLFVKEHFTKGSLFSIFR 221
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
109-274 1.95e-07

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 54.11  E-value: 1.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 109 SGAGGQAQEADGArVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTE-- 186
Cdd:PRK12323  366 GQSGGGAGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARgp 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 187 AAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTG 266
Cdd:PRK12323  445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524


                  ....*...
gi 1622968836 267 AIPKATSA 274
Cdd:PRK12323  525 SIPDPATA 532
 
Name Accession Description Interval E-value
Arm_2 pfam04826
Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain ...
 383-601 6.58e-116

Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors.


Pssm-ID: 461447 [Multi-domain]  Cd Length: 221  Bit Score: 344.78  E-value: 6.58e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 383 LGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQ 462
Cdd:pfam04826   1 LEPQELDKLLALLKSSEDPFIHEIALITLGNSAAYPFNQDIIRDLGGIPIIANLLSDSNPEVKEKALNALNNLSMNVENQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 463 GRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDML 542
Cdd:pfam04826  81 KKIKVYVNQVCKDIVSSPLNSEVQLAGLKLLTNLSVTNDYHHLVVSYIRDFFSLLSQGNEKTKFQVLKVLLNLSENPAMT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622968836 543 KKLLSTQVPASFSSLYNSYVESEILINALTLFEIIYDNLRAE--VFNYREFNKGSLFYLCT 601
Cdd:pfam04826 161 RELLSAQVPSSLLSLFNSKEAKENLLRALTIFENINFHLKKEakLFVKEHFTKGSLFSIFR 221
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
109-274 1.95e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.11  E-value: 1.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 109 SGAGGQAQEADGArVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTE-- 186
Cdd:PRK12323  366 GQSGGGAGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARgp 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 187 AAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTG 266
Cdd:PRK12323  445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524


                  ....*...
gi 1622968836 267 AIPKATSA 274
Cdd:PRK12323  525 SIPDPATA 532
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 134-275 1.80e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 134 AMASTiAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAA---PTEVTEAPGVAAPTKVSEAP- 209
Cdd:pfam05109 460 APAST-GPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTtptPNATSPTPAVTTPTPNATSPt 538

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622968836 210 -GVTSPTEAAEAPVpatptgaaaPTGAAESPGTSGSPRTAVVPgtSAAKKATPGAHTGAIPKATSAT 275
Cdd:pfam05109 539 lGKTSPTSAVTTPT---------PNATSPTPAVTTPTPNATIP--TLGKTSPTSAVTTPTPNATSPT 594
VATPase_H cd00256
VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the ...
 388-455 1.68e-03

VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.


Pssm-ID: 238159 [Multi-domain]  Cd Length: 429  Bit Score: 41.23  E-value: 1.68e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622968836 388 LRKVLALLQKSDDPFIQQVALLTLSNNAN-YSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNL 455
Cdd:cd00256   355 LKILIHLLETSVDPIILAVACHDIGEYVRhYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 139-261 1.92e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.91  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 139 IAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETS------RAAVPPGTVVPTEAAAPT--EVTEAPGVAAPTKVSEAPG 210
Cdd:NF040712  205 LAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPddlasaRRRRAGVEQPEDEPVGPGaaPAAEPDEATRDAGEPPAPG 284

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1622968836 211 VTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAvVPGTSAAKKATP 261
Cdd:NF040712  285 AAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAP-KPKRRRRRASVP 334
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 420-456 2.21e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 36.25  E-value: 2.21e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1622968836  420 NQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLS 456
Cdd:smart00185   4 NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
KLF9_13_N-like cd21975
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ...
 164-290 3.67e-03

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.


Pssm-ID: 409240 [Multi-domain]  Cd Length: 163  Bit Score: 38.52  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 164 AEAPREAETSRAAVPPG----TVVPTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESP 239
Cdd:cd21975    31 AAGLDVRATREVAKGPGppgpAWKPDGADSPGLVTAAPHLLAANVLAPLRGPSVEGSSLESGDADMGSDSDVAPASGAAA 110

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1622968836 240 GTSgsprtavvPGTSAAKKATPGAHTGAIPKATSATGAVPKGGAKGVTRSR 290
Cdd:cd21975   111 STS--------PESSSDAASSPSPLSLLHPGEAGLEPERPRPRVRRGVRRR 153
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 29-222 7.32e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.06  E-value: 7.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  29 RGRDQTKKRMAKPKNRAVAGTGARARAGLRAGFTIDLGSGFSPPTPVRAEAEDRAQDEASVLDTAGAEAVAPAASSAEAQ 108
Cdd:COG3266   171 QGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAEVLTARLVLLLLI 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 109 SGAGGQAQEADGARVGPKAESivgAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRaavppgtvvPTEAA 188
Cdd:COG3266   251 IGSALKAPSQASSASAPATTS---LGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAA---------PAEAA 318

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1622968836 189 APTEVTEAPgVAAPTKVSEAPgvtSPTEAAEAPV 222
Cdd:COG3266   319 APQPTAAKP-VVTETAAPAAP---APEAAAAAAA 348
 
Name Accession Description Interval E-value
Arm_2 pfam04826
Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain ...
 383-601 6.58e-116

Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors.


Pssm-ID: 461447 [Multi-domain]  Cd Length: 221  Bit Score: 344.78  E-value: 6.58e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 383 LGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQ 462
Cdd:pfam04826   1 LEPQELDKLLALLKSSEDPFIHEIALITLGNSAAYPFNQDIIRDLGGIPIIANLLSDSNPEVKEKALNALNNLSMNVENQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 463 GRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDML 542
Cdd:pfam04826  81 KKIKVYVNQVCKDIVSSPLNSEVQLAGLKLLTNLSVTNDYHHLVVSYIRDFFSLLSQGNEKTKFQVLKVLLNLSENPAMT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622968836 543 KKLLSTQVPASFSSLYNSYVESEILINALTLFEIIYDNLRAE--VFNYREFNKGSLFYLCT 601
Cdd:pfam04826 161 RELLSAQVPSSLLSLFNSKEAKENLLRALTIFENINFHLKKEakLFVKEHFTKGSLFSIFR 221
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
109-274 1.95e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.11  E-value: 1.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 109 SGAGGQAQEADGArVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTE-- 186
Cdd:PRK12323  366 GQSGGGAGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARgp 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 187 AAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTG 266
Cdd:PRK12323  445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524


                  ....*...
gi 1622968836 267 AIPKATSA 274
Cdd:PRK12323  525 SIPDPATA 532
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
59-272 4.69e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.96  E-value: 4.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  59 AGFTIDL-----------GSGFSPPTPVRAEAEDRAQDEASVLDTAGAEAVAPAASSAEAQSGAGGQAQEADGARVGPKA 127
Cdd:PRK12323  351 AGFTMTLlrmlafrpgqsGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 128 ESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEV---TEAPGVAAPTK 204
Cdd:PRK12323  431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppwEELPPEFASPA 510

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622968836 205 VSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKAT 272
Cdd:PRK12323  511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
39-279 1.49e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.39  E-value: 1.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  39 AKPKNRAVAGTGARARAGLRAGFTIdlGSGFSPPTPVRAEAEDRAQDEASVldtagaeavapaASSAEAQSGAggqaqEA 118
Cdd:PRK07003  379 AVPAPGARAAAAVGASAVPAVTAVT--GAAGAALAPKAAAAAAATRAEAPP------------AAPAPPATAD-----RG 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 119 DGARVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPR-EAETSRAAVPPGTVVPTEAAAPTEVTEAP 197
Cdd:PRK07003  440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAfEPAPRAAAPSAATPAAVPDARAPAAASRE 519

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 198 GVAAPTKvSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRtavvpGTSAAKKATPGAHTGAIPKATSATGA 277
Cdd:PRK07003  520 DAPAAAA-PPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDR-----GARAAAAAKPAAAPAAAPKPAAPRVA 593


                  ..
gi 1622968836 278 VP 279
Cdd:PRK07003  594 VQ 595
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
49-283 8.24e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.08  E-value: 8.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  49 TGARARAGLR----AGFTIDL---------------GSGFSPPTPVRAEAEDRAQDEASVLDTAGAEAVAPAASSAEAQ- 108
Cdd:PRK07003  332 TVGRGELGLApdeyAGFTMTLlrmlafepavtgggaPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALa 411

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 109 ----SGAGGQAQEADGARVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAmtgAPKVAEAPREAETSRAAVPPGTVVP 184
Cdd:PRK07003  412 pkaaAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRC---DERDAQPPADSGSASAPASDAPPDA 488

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 185 TEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATP--G 262
Cdd:PRK07003  489 AFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSdrG 568

                         250       260
                  ....*....|....*....|.
gi 1622968836 263 AHTGAIPKATSATGAVPKGGA 283
Cdd:PRK07003  569 ARAAAAAKPAAAPAAAPKPAA 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
 66-282 1.68e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 1.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836   66 GSGFSPPTPVRAEAEDRAQDEASVLDTAGAEAVAPAASSAEAQSGAGGQAQEADGARVGPKAESIVGAAMASTIAPPP-- 143
Cdd:PHA03247  2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPha 2714

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  144 ---GVTEALGAAEAHAMTGAPKVAEAPREAET--------SRAAVPPGTVVPTEAAAPTevteAPGVAAPTKVSEAPGVT 212
Cdd:PHA03247  2715 lvsATPLPPGPAAARQASPALPAAPAPPAVPAgpatpggpARPARPPTTAGPPAPAPPA----APAAGPPRRLTRPAVAS 2790

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  213 SPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGG 282
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 134-284 3.21e-05

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 46.48  E-value: 3.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 134 AMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAET--SRAAVPPGTVvpteAAAPTEVTEAPG--VAAPTKVSEAP 209
Cdd:PTZ00436  203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAapAKAAAAPAKA----AAPPAKAAAPPAkaAAPPAKAAAPP 278

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622968836 210 GVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSA---AKKATPGAHTGAIPKATSATGAVPKGGAK 284
Cdd:PTZ00436  279 AKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAappAKAATPPAKAAAPPAKAAAAPVGKKAGGK 356
PHA03247 PHA03247
large tegument protein UL36; Provisional
 111-261 4.30e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 4.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  111 AGGQAQEADGARVGPKAESIVGAAMASTIAPP-PGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAA 189
Cdd:PHA03247  2727 AARQASPALPAAPAPPAVPAGPATPGGPARPArPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622968836  190 PTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATP 261
Cdd:PHA03247  2807 PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAP 2878
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 125-272 7.90e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 7.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 125 PKAESIVGAAMASTIAPPPGVTEALGAAEAHAmTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTK 204
Cdd:PRK07764  365 PSASDDERGLLARLERLERRLGVAGGAGAPAA-AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622968836 205 VSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKAT 272
Cdd:PRK07764  444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
160-286 8.26e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 8.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 160 APKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTK-VSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAeS 238
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARaVAAAPARRSPAPEALAAARQASARGPGGAPAP-A 451

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1622968836 239 PGTSGSPRTAVVPgtsAAKKATPGAHTGAIPKATSATGAVPKGGAKGV 286
Cdd:PRK12323  452 PAPAAAPAAAARP---AAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496
PRK04654 PRK04654
sec-independent translocase; Provisional
 125-207 1.10e-04

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 44.03  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 125 PKAESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPK----------VAEAPREAETSRAAVPPGTVVPTEAAAPTevt 194
Cdd:PRK04654  123 AQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHqtlvpaphdtIVPAPHAAHLPSAPATPVSVAPVDAGTSA--- 199

                          90
                  ....*....|...
gi 1622968836 195 eAPGVAAPTKVSE 207
Cdd:PRK04654  200 -SPTPSEPTKIQE 211
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 35-251 1.13e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.36  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  35 KKRMAKPKNRAVAGTGARARAGLRAGFTIDLG-----SGFSPPTPVRAEAEDRAQDEASVLDTAGAEAVAPAASSAEAQS 109
Cdd:PRK07764  558 ARRFASPGNAEVLVTALAEELGGDWQVEAVVGpapgaAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPA 637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 110 GAGGQAQEADGARVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAA 189
Cdd:PRK07764  638 EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDP 717

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622968836 190 PTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVP 251
Cdd:PRK07764  718 AAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 84-221 1.58e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  84 QDEASVLDTAGAEAVAPAASSAEAQSGAGGQAQEADGARVGPKAESIVGAAMAStiAPPPGVTEALGAAEAHAmtgAPKV 163
Cdd:PRK07764  369 DDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA--PAPAAAPQPAPAPAPAP---APPS 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622968836 164 AEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAP 221
Cdd:PRK07764  444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
rne PRK10811
ribonuclease E; Reviewed
 105-279 1.74e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 44.65  E-value: 1.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  105 AEAQSGAGGQAQEADGARVGPKAESIVGAAMASTIAPPPGVTEALGAAEAhamtgaPKVAEAPREAEtsraAVPPGTVVP 184
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEE------PVVVAEPQPEE----VVVVETTHP 917

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  185 TEAAAPteVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAH 264
Cdd:PRK10811   918 EVIAAP--VTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT 995

                          170
                   ....*....|....*
gi 1622968836  265 TGAIPKATSATGAVP 279
Cdd:PRK10811   996 AVEPEVAPAQVPEAT 1010
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 106-222 1.77e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 1.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 106 EAQSGAGGQAQEADGARVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAmtGAPKVAEAPREAETSRAAVPPGTVVPT 185
Cdd:PRK07764  382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPA--PAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1622968836 186 EAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPV 222
Cdd:PRK07764  460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA 496
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 134-275 1.80e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 134 AMASTiAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAA---PTEVTEAPGVAAPTKVSEAP- 209
Cdd:pfam05109 460 APAST-GPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTtptPNATSPTPAVTTPTPNATSPt 538

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622968836 210 -GVTSPTEAAEAPVpatptgaaaPTGAAESPGTSGSPRTAVVPgtSAAKKATPGAHTGAIPKATSAT 275
Cdd:pfam05109 539 lGKTSPTSAVTTPT---------PNATSPTPAVTTPTPNATIP--TLGKTSPTSAVTTPTPNATSPT 594
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 127-262 2.30e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 127 AESIVGAAMASTIAPPPGvteALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPtevTEAPGVAAPTKVS 206
Cdd:PRK14951  369 AAEAAAPAEKKTPARPEA---AAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP---AAAAPAAAPAAAP 442

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1622968836 207 EAPGVTSPTEAAEAPvpatptgAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPG 262
Cdd:PRK14951  443 AAVALAPAPPAQAAP-------ETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 153-275 2.63e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 43.95  E-value: 2.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 153 EAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAP 232
Cdd:PHA03269   30 ELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPK 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1622968836 233 TGAAESPGTSGS--PRTAVVPGTSAAKKATPGAHTGAIPKATSAT 275
Cdd:PHA03269  110 PDAAEAFTSAAQahEAPADAGTSAASKKPDPAAHTQHSPPPFAYT 154
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 109-247 4.94e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.13  E-value: 4.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 109 SGAGGQAQEADGARvGPkaesivGAAMASTIaPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTE-- 186
Cdd:PRK14959  374 SGGGASAPSGSAAE-GP------ASGGAATI-PTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPpr 445

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622968836 187 -------AAAPTEVTEAPGvaAPTKVSEAPGVTSPTEAAEAPvpatptgaaaptgaaeSPGTSGSPRT 247
Cdd:PRK14959  446 sgipprpAPRMPEASPVPG--APDSVASASDAPPTLGDPSDT----------------AEHTPSGPRT 495
PHA03247 PHA03247
large tegument protein UL36; Provisional
 104-288 6.68e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 6.68e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  104 SAEAQSGAGGQAQEADGARVGPKAESIVGAAMASTIAPPPGVTEA-----LGAAEAHAMTGAPKVAEAPREAETSRAAVP 178
Cdd:PHA03247  2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAanepdPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  179 PGTvvPTEAAAPTEvteapgvaAPTKVSEAPGVTSPTEAAEAPvpatptgaaAPTGAAESPGTSGSPRTAVVPGTSAAKK 258
Cdd:PHA03247  2670 LGR--AAQASSPPQ--------RPRRRAARPTVGSLTSLADPP---------PPPPTPEPAPHALVSATPLPPGPAAARQ 2730

                          170       180       190
                   ....*....|....*....|....*....|
gi 1622968836  259 ATPGAHTGAIPKATSATGAVPKGGAKGVTR 288
Cdd:PHA03247  2731 ASPALPAAPAPPAVPAGPATPGGPARPARP 2760
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 121-279 7.56e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 7.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 121 ARVGPKAesivGAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVA 200
Cdd:PRK07764  586 AVVGPAP----GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622968836 201 APTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVP 279
Cdd:PRK07764  662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 142-221 8.93e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.57  E-value: 8.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  142 PPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTvvPTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAP 221
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA--AAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
VATPase_H cd00256
VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the ...
 388-455 1.68e-03

VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.


Pssm-ID: 238159 [Multi-domain]  Cd Length: 429  Bit Score: 41.23  E-value: 1.68e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622968836 388 LRKVLALLQKSDDPFIQQVALLTLSNNAN-YSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNL 455
Cdd:cd00256   355 LKILIHLLETSVDPIILAVACHDIGEYVRhYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 133-367 1.69e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  133 AAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTKVSEAPGVT 212
Cdd:PHA03307    98 ASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  213 SPTEAAEAPVpatptgaaaptgaaeSPGTSgsprtavVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGAKGVTRSRNG 292
Cdd:PHA03307   178 SPEETARAPS---------------SPPAE-------PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622968836  293 GKGKGKKSKVEVDELGMGFRPGDGAAAAAaasanggqaflaeVPDSEEGESGWTDTESD-SDSEPETQRRGRGRRP 367
Cdd:PHA03307   236 SSDSSSSESSGCGWGPENECPLPRPAPIT-------------LPTRIWEASGWNGPSSRpGPASSSSSPRERSPSP 298
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 149-287 1.70e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 149 LGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTKVSE------APGVTSPTEAAEAPV 222
Cdd:PRK07764  364 LPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAApapaaaPQPAPAPAPAPAPPS 443

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622968836 223 PATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGAKGVT 287
Cdd:PRK07764  444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 139-261 1.92e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.91  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 139 IAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETS------RAAVPPGTVVPTEAAAPT--EVTEAPGVAAPTKVSEAPG 210
Cdd:NF040712  205 LAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPddlasaRRRRAGVEQPEDEPVGPGaaPAAEPDEATRDAGEPPAPG 284

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1622968836 211 VTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAvVPGTSAAKKATP 261
Cdd:NF040712  285 AAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAP-KPKRRRRRASVP 334
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 103-276 2.00e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 40.70  E-value: 2.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 103 SSAEAQSGAGGQAQEADGARVGPKAE-SIVGAAMASTIAPPPGVtealGAAEAHAMTGAPKVAEAPREAET--SRAAVPP 179
Cdd:PTZ00436  196 AAAAKQKAAAKKAAAPSGKKSAKAAApAKAAAAPAKAAAPPAKA----AAAPAKAAAAPAKAAAPPAKAAAppAKAAAPP 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 180 GTVV--PTEAAAPTevteAPGVAAPTKVSEAPGVTS--PTEAAEAPVPATPtgaaaptgaaeSPGTSGSPRTAVvpGTSA 255
Cdd:PTZ00436  272 AKAAapPAKAAAPP----AKAAAPPAKAAAAPAKAAaaPAKAAAAPAKAAA-----------PPAKAAAPPAKA--ATPP 334

                         170       180
                  ....*....|....*....|.
gi 1622968836 256 AKKATPGAHTGAIPKATSATG 276
Cdd:PTZ00436  335 AKAAAPPAKAAAAPVGKKAGG 355
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 420-456 2.21e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 36.25  E-value: 2.21e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1622968836  420 NQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLS 456
Cdd:smart00185   4 NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
124-248 2.46e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.56  E-value: 2.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 124 GPKAESIVGAAMASTIAPPpgvteaLGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPT 203
Cdd:PRK12373  201 AGKARYNASKALAEDIGDT------VKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNA 274

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1622968836 204 KVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAES-PGTSGSPRTA 248
Cdd:PRK12373  275 KAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDkPRPLGIARPG 320
PHA03247 PHA03247
large tegument protein UL36; Provisional
 104-280 2.69e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 2.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  104 SAEAQSGAGGQAqeADGARVGPKAESIVGAAMASTIAPPPGVTEALGAAEAHAMTGAPkvaeAPREAETSRAAVPPGTVV 183
Cdd:PHA03247  2744 VPAGPATPGGPA--RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLP----SPWDPADPPAAVLAPAAA 2817

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  184 PTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEA----------------AEAPVPATPTGAAAPTGAAESPGTSGSPRT 247
Cdd:PHA03247  2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvapggdvrrrppSRSPAAKPAAPARPPVRRLARPAVSRSTES 2897

                          170       180       190
                   ....*....|....*....|....*....|...
gi 1622968836  248 AVVPGTSAAKKATPGAHTGAIPKATSATGAVPK 280
Cdd:PHA03247  2898 FALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
168-282 2.77e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 40.74  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 168 REAETSRAAVPPGTVVPTEAAAPTEVTEAPgVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRT 247
Cdd:PRK12727   53 RALETARSDTPATAAAPAPAPQAPTKPAAP-VHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVR 131

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622968836 248 AVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGG 282
Cdd:PRK12727  132 AASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQL 166
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 133-271 3.42e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.62  E-value: 3.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 133 AAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGV------AAPTKVS 206
Cdd:PRK07994  362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqraqgATKAKKS 441

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622968836 207 EAPGVTSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPgtsAAKKATPGAHTGAIPKA 271
Cdd:PRK07994  442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNP---VEVKKEPVATPKALKKA 503
KLF9_13_N-like cd21975
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ...
 164-290 3.67e-03

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.


Pssm-ID: 409240 [Multi-domain]  Cd Length: 163  Bit Score: 38.52  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 164 AEAPREAETSRAAVPPG----TVVPTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPATPTGAAAPTGAAESP 239
Cdd:cd21975    31 AAGLDVRATREVAKGPGppgpAWKPDGADSPGLVTAAPHLLAANVLAPLRGPSVEGSSLESGDADMGSDSDVAPASGAAA 110

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1622968836 240 GTSgsprtavvPGTSAAKKATPGAHTGAIPKATSATGAVPKGGAKGVTRSR 290
Cdd:cd21975   111 STS--------PESSSDAASSPSPLSLLHPGEAGLEPERPRPRVRRGVRRR 153
rne PRK10811
ribonuclease E; Reviewed
 114-247 4.12e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 40.41  E-value: 4.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  114 QAQEADGARVGPKAESIVGAAMASTIAPPPGVTEALGAAEA-HAMTGAPKVAEAP--------------REAETSRAAVP 178
Cdd:PRK10811   869 VVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVvVVETTHPEVIAAPvteqpqvitesdvaVAQEVAEHAEP 948

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622968836  179 PGTVVP-TEAAAPTEVTEAPGVAAPTKVSEAPGV---TSPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRT 247
Cdd:PRK10811   949 VVEPQDeTADIEEAAETAEVVVAEPEVVAQPAAPvvaEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMT 1021
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 133-221 4.49e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.18  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 133 AAMASTIAPPPGVTEALGAAEAH-------AMTGAPKVAEAPR--EAETSRAAVPPGTVVPTEAAAPteVTEAPGVAAPT 203
Cdd:PRK14950  354 AVIEALLVPVPAPQPAKPTAAAPspvrptpAPSTRPKAAAAANipPKEPVRETATPPPVPPRPVAPP--VPHTPESAPKL 431

                          90
                  ....*....|....*...
gi 1622968836 204 KVSEAPGVTSPTEAAEAP 221
Cdd:PRK14950  432 TRAAIPVDEKPKYTPPAP 449
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 9-221 4.63e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836   9 CVAAGIVIGAGAWYCVYKYTRGRDQTKKRMAKPkNRAVAGTGARARAGLRAGftiDLGSGFSPPTPVRAEAEDRAQDEAS 88
Cdd:PRK07764  586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAP-AAPAAPAAPAPAGAAAAP---AEASAAPAPGVAAPEHHPKHVAVPD 661

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  89 VLDTAGAEAVAPAASSAEAQSGAGGQAQEADGARVGPKAEsivgAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPR 168
Cdd:PRK07764  662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP----APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1622968836 169 EA---ETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAP 221
Cdd:PRK07764  738 PVplpPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 144-290 6.47e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 6.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 144 GVTEALGAAEAHAMTGAPkvAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVP 223
Cdd:PRK07764  373 GLLARLERLERRLGVAGG--AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPA 450

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622968836 224 ATPTGAAAPTGAAESPGTSGSPrtAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGAKGVTRSR 290
Cdd:PRK07764  451 GGAPSPPPAAAPSAQPAPAPAA--APEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 29-222 7.32e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.06  E-value: 7.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  29 RGRDQTKKRMAKPKNRAVAGTGARARAGLRAGFTIDLGSGFSPPTPVRAEAEDRAQDEASVLDTAGAEAVAPAASSAEAQ 108
Cdd:COG3266   171 QGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAEVLTARLVLLLLI 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836 109 SGAGGQAQEADGARVGPKAESivgAAMASTIAPPPGVTEALGAAEAHAMTGAPKVAEAPREAETSRaavppgtvvPTEAA 188
Cdd:COG3266   251 IGSALKAPSQASSASAPATTS---LGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAA---------PAEAA 318

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1622968836 189 APTEVTEAPgVAAPTKVSEAPgvtSPTEAAEAPV 222
Cdd:COG3266   319 APQPTAAKP-VVTETAAPAAP---APEAAAAAAA 348
rne PRK10811
ribonuclease E; Reviewed
 72-221 7.55e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 39.64  E-value: 7.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836   72 PTPVRAEAEDRAQDEA-----SVLDTAGAEAVAPAASSAEAQSGAGGQAQEADGARVGPKAESIVGAAMASTIA-----P 141
Cdd:PRK10811   848 VRPQDVQVEEQREAEEvqvqpVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAapvteQ 927

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  142 PPGVTEALGAAEAH-------AMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPgVAAPTKVSEAPGVTSP 214
Cdd:PRK10811   928 PQVITESDVAVAQEvaehaepVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE-VETVTAVEPEVAPAQV 1006

                          170
                   ....*....|...
gi 1622968836  215 TEA------AEAP 221
Cdd:PRK10811  1007 PEAtvehnhATAP 1019
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
71-224 9.23e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 39.20  E-value: 9.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  71 PPTPVRAEAEDRAQDEASvldtagaeAVAPAASSAEAQSGAGGQAQEADGARVGPKAESIVGA--AMASTIAPPPGVTEA 148
Cdd:PRK12727   79 PAAPVHAPLKLSANANMS--------QRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAAsiPSPAAQALAHAAAVR 150

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622968836 149 LGAAEAHAMTGAPK--VAEAPREAETSRAAVPPGTVVPTeAAAPTEVTEAPGVAAPTKVSEAPGVTSPTEAAEAPVPA 224
Cdd:PRK12727  151 TAPRQEHALSAVPEqlFADFLTTAPVPRAPVQAPVVAAP-APVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQI 227
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 156-279 9.79e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.10  E-value: 9.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622968836  156 AMTGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEAPgVAAPTKVSEAPGVTSPTEAAEAPVpatptgaaaptgA 235
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP-AAPPKPAAAAAAAAAPAAPPAAAA------------A 105

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1622968836  236 AESPGTSGSPRTAVVPGTSAAKKATPGAHTgAIPKATSATgAVP 279
Cdd:PRK12270   106 AAPAAAAVEDEVTPLRGAAAAVAKNMDASL-EVPTATSVR-AVP 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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