|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
867-1192 |
2.16e-76 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
:
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 255.36 E-value: 2.16e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 867 LARYLKRLQPGTLRARQLLELLHCAheaEEAGIWQHVVQELpaRLSFLGTRLTPP--DAHVLGKALEAAGqdfalDLRST 944
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCL---QVLRLEGNTLGEE--AAKALASALRPQpsLKELCLSLNETGR-----IPRGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 945 GIDPSGLGSLVGLSCVTHFRAALS-DTVALWESLRQ---HGETELLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTR 1019
Cdd:cd00116 71 QSLLQGLTKGCGLQELDLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1020 S--SSEDTAGELPAVRDLKKLEFALGPIsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLET 1097
Cdd:cd00116 150 EgaSCEALAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1098 LNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNCICDMGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRKC 1177
Cdd:cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLE 304
|
330
....*....|....*
gi 1622915359 1178 PHVETLAMWTPTIPF 1192
Cdd:cd00116 305 PGNELESLWVKDDSF 319
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
492-661 |
1.05e-48 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
:
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 170.56 E-value: 1.05e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 492 QVIAMLGKAGQGKSYWAGAVSRAWACGRLPQY-DFVFSVPCHCLNRPGDVYRLQDLLFSLGPRPLVAADEVFSHIVKRPD 570
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGfDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 571 RILLILDAFEELEAQDGFLHStcgpalaePCSLRGLLAGLFQKKLLRGCTLLLTARPRGR--LVQSLSKADaLFELSGFS 648
Cdd:pfam05729 81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALrdLRRGLEEPR-YLEVRGFS 151
|
170
....*....|...
gi 1622915359 649 MEQAQAYVMRYFE 661
Cdd:pfam05729 152 ESDRKQYVRKYFS 164
|
|
| NLRC4_HD2 super family |
cl39284 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
791-896 |
1.68e-04 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.
The actual alignment was detected with superfamily member pfam17776:
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 42.66 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 791 LQCFLGALWLALSGEIKDKELPQYLaLTPRKKRPYDNWLEGVP-----------RFLTGLIFQPRARCLGALVGPSATAf 859
Cdd:pfam17776 4 FQEFFAALFYVLSFKEEKSNPLKEF-FGLRKRESLKSLLDKALksknghldlflRFLFGLLNEENQRLLEGLLGCKLSS- 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1622915359 860 adRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEE 896
Cdd:pfam17776 82 --EIKQELLQWIKSLIQKELSSERFLNLFHCLYELQD 116
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
867-1192 |
2.16e-76 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 255.36 E-value: 2.16e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 867 LARYLKRLQPGTLRARQLLELLHCAheaEEAGIWQHVVQELpaRLSFLGTRLTPP--DAHVLGKALEAAGqdfalDLRST 944
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCL---QVLRLEGNTLGEE--AAKALASALRPQpsLKELCLSLNETGR-----IPRGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 945 GIDPSGLGSLVGLSCVTHFRAALS-DTVALWESLRQ---HGETELLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTR 1019
Cdd:cd00116 71 QSLLQGLTKGCGLQELDLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1020 S--SSEDTAGELPAVRDLKKLEFALGPIsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLET 1097
Cdd:cd00116 150 EgaSCEALAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1098 LNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNCICDMGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRKC 1177
Cdd:cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLE 304
|
330
....*....|....*
gi 1622915359 1178 PHVETLAMWTPTIPF 1192
Cdd:cd00116 305 PGNELESLWVKDDSF 319
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
492-661 |
1.05e-48 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 170.56 E-value: 1.05e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 492 QVIAMLGKAGQGKSYWAGAVSRAWACGRLPQY-DFVFSVPCHCLNRPGDVYRLQDLLFSLGPRPLVAADEVFSHIVKRPD 570
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGfDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 571 RILLILDAFEELEAQDGFLHStcgpalaePCSLRGLLAGLFQKKLLRGCTLLLTARPRGR--LVQSLSKADaLFELSGFS 648
Cdd:pfam05729 81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALrdLRRGLEEPR-YLEVRGFS 151
|
170
....*....|...
gi 1622915359 649 MEQAQAYVMRYFE 661
Cdd:pfam05729 152 ESDRKQYVRKYFS 164
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
1062-1183 |
1.51e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 67.89 E-value: 1.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1062 SSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNcICDMGAES 1141
Cdd:COG5238 264 TTVETLYL---SGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNG-IGAQGAIA 339
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1622915359 1142 LARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHVETL 1183
Cdd:COG5238 340 LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLREL 381
|
|
| NLRC4_HD2 |
pfam17776 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
791-896 |
1.68e-04 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 42.66 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 791 LQCFLGALWLALSGEIKDKELPQYLaLTPRKKRPYDNWLEGVP-----------RFLTGLIFQPRARCLGALVGPSATAf 859
Cdd:pfam17776 4 FQEFFAALFYVLSFKEEKSNPLKEF-FGLRKRESLKSLLDKALksknghldlflRFLFGLLNEENQRLLEGLLGCKLSS- 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1622915359 860 adRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEE 896
Cdd:pfam17776 82 --EIKQELLQWIKSLIQKELSSERFLNLFHCLYELQD 116
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
1092-1117 |
1.52e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.00 E-value: 1.52e-03
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
867-1192 |
2.16e-76 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 255.36 E-value: 2.16e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 867 LARYLKRLQPGTLRARQLLELLHCAheaEEAGIWQHVVQELpaRLSFLGTRLTPP--DAHVLGKALEAAGqdfalDLRST 944
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCL---QVLRLEGNTLGEE--AAKALASALRPQpsLKELCLSLNETGR-----IPRGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 945 GIDPSGLGSLVGLSCVTHFRAALS-DTVALWESLRQ---HGETELLQAAEEKfTIEPFKAKSLKDV-EDLGKLVQTQRTR 1019
Cdd:cd00116 71 QSLLQGLTKGCGLQELDLSDNALGpDGCGVLESLLRsssLQELKLNNNGLGD-RGLRLLAKGLKDLpPALEKLVLGRNRL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1020 S--SSEDTAGELPAVRDLKKLEFALGPIsGPQAFPKLVRILTAFSSLQHLDLDalsENKIGDEGVSQLSATFPQLKSLET 1097
Cdd:cd00116 150 EgaSCEALAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLN---NNGLTDEGASALAETLASLKSLEV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1098 LNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNCICDMGAESLARVLPDMVSLRVMDVQYNKFTAAGaQQLAASLRKC 1177
Cdd:cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLE 304
|
330
....*....|....*
gi 1622915359 1178 PHVETLAMWTPTIPF 1192
Cdd:cd00116 305 PGNELESLWVKDDSF 319
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
492-661 |
1.05e-48 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 170.56 E-value: 1.05e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 492 QVIAMLGKAGQGKSYWAGAVSRAWACGRLPQY-DFVFSVPCHCLNRPGDVYRLQDLLFSLGPRPLVAADEVFSHIVKRPD 570
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGfDFVFFLPCRELSRSGNARSLADLLFSQWPEPAAPVSEVWAVILELPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 571 RILLILDAFEELEAQDGFLHStcgpalaePCSLRGLLAGLFQKKLLRGCTLLLTARPRGR--LVQSLSKADaLFELSGFS 648
Cdd:pfam05729 81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALrdLRRGLEEPR-YLEVRGFS 151
|
170
....*....|...
gi 1622915359 649 MEQAQAYVMRYFE 661
Cdd:pfam05729 152 ESDRKQYVRKYFS 164
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
1062-1183 |
1.51e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 67.89 E-value: 1.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1062 SSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLPSLAASLLRLSLYNNcICDMGAES 1141
Cdd:COG5238 264 TTVETLYL---SGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNG-IGAQGAIA 339
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1622915359 1142 LARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHVETL 1183
Cdd:COG5238 340 LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLREL 381
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
1065-1200 |
2.07e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 67.51 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1065 QHLDLDALSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLpSLAASLLRLSLYNNCICDMGAESLAR 1144
Cdd:COG5238 180 NSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEAL-KGNKSLTTLDLSNNQIGDEGVIALAE 258
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1145 VLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHVETLAMWTPTIPF----SVQEHLQQ 1200
Cdd:COG5238 259 ALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDegaiALAEGLQG 318
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
1054-1205 |
4.29e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 66.74 E-value: 4.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1054 LVRILTAFSSLQHLDLdalSENKIGDEGVSQLSATFPQLKSLETLNLSQNSITDLGAYKLAEGLpSLAASLLRLSLYNNC 1133
Cdd:COG5238 284 LAKALQGNTTLTSLDL---SVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKAL-QENTTLHSLDLSDNQ 359
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622915359 1134 ICDMGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKcPHVETLAMWTPTIPFSVQEHLQQQDSRI 1205
Cdd:COG5238 360 IGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQT-NRLHTLILDGNLIGAEAQQRLEQLLERI 430
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
379-1073 |
2.18e-07 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 55.58 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 379 PEPALISRANMTEHKTSPTQRQAAGEVSNKLPKWPESVEQFYRSLQDTYRAEPTGPDGILMEVDLVQARLERSSSKSLER 458
Cdd:COG5635 63 SRSALSAAALLARALSALLLVLLLLESLLLLLLLLLLLAEALLALLELAALLKAVLLSLSGGSDLVLLLSESDLLLALLI 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 459 ELATPDWAERQLAQGGLAEGLLAAKEHRRPRET-----QVIAMLGKAGQGKS----YWAgavSRAWACGRLPQYDFVFSV 529
Cdd:COG5635 143 LLLDADGLLVSLDDLYVPLNLLERIESLKRLELleakkKRLLILGEPGSGKTtllrYLA---LELAERYLDAEDPIPILI 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 530 PCHCLNRPGDvyrLQDLLFSLGPRPLVAADEVFSHIVKRpDRILLILDAFEELEAQDGFLHstcgpalaepcsLRGLLAG 609
Cdd:COG5635 220 ELRDLAEEAS---LEDLLAEALEKRGGEPEDALERLLRN-GRLLLLLDGLDEVPDEADRDE------------VLNQLRR 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 610 LFQKklLRGCTLLLTARPRGRLVQSLSKADAlFELSGFSMEQAQAYVMRYFECsgMTEHQDRALALLRDRPFLLSHSHSP 689
Cdd:COG5635 284 FLER--YPKARVIITSRPEGYDSSELEGFEV-LELAPLSDEQIEEFLKKWFEA--TERKAERLLEALEENPELRELARNP 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 690 TLCQAVCQLsealleLGEDAELPSTLTGLYVGLL---------GRAALNGPPGALAE----LAKLAWELgrrHQStlQEN 756
Cdd:COG5635 359 LLLTLLALL------LRERGELPDTRAELYEQFVelllerwdeQRGLTIYRELSREElrelLSELALAM---QEN--GRT 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 757 QFPSADVRTWAMAKGLVQHPPGATESELAFPSFLLQC---------------FLGALWLAlsgeikdkELPQYLALTPRK 821
Cdd:COG5635 428 EFAREELEEILREYLGRRKDAEALLDELLLRTGLLVErgegrysfahrsfqeYLAARALV--------EELDEELLELLA 499
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 822 KRPYDNWLEGVPRFLTGLIFQPRARCL---GALVGPSATAFADRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAG 898
Cdd:COG5635 500 EHLEDPRWREVLLLLAGLLDDVKQIKElidALLARDDAAALALAAALLLALLLALALLALLALLLLLRLLLALLALLLLA 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 899 IWQHVVQELPARLSFLGTRLTPPDAHVLGKALEAAGQDFALDLRSTGIDPSGLGSLVGL--SCVTHFRAALSDTVALWES 976
Cdd:COG5635 580 LLLLLLLALLLALLALDLGLAALLLLLLLLLLLLLLLALALLLALLLLLLLLLLAELLLlaLLALVLLSLLLASRLLLIT 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 977 LRQHGETELLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKLEFALGPISGPQAFPKLVR 1056
Cdd:COG5635 660 LLLLAAASAALLLLLLLLLAELLLALLALASLLLLLLLALALALALLLLAVLLAAALDLLLLLVLLLALLLVLALALSLL 739
|
730
....*....|....*..
gi 1622915359 1057 ILTAFSSLQHLDLDALS 1073
Cdd:COG5635 740 LLALALLLAGALLLESS 756
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
883-1117 |
6.45e-05 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 46.71 E-value: 6.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 883 QLLELLHCAHEAEEAGIWQHVVQELPARLSFLGT-RLTPPDAHVLGKALEAAGQDFALDLRSTGIDPSGLGSLV----GL 957
Cdd:COG5238 156 VHLLGLAARLGLLAAISMAKALQNNSVETVYLGCnQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAealkGN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 958 SCVTHFRaaLSDT-------VALWESLRQHGETELLQAAEEKFTIEPFK--AKSLKDVEDLGKLV--QTQRTRSSSEDTA 1026
Cdd:COG5238 236 KSLTTLD--LSNNqigdegvIALAEALKNNTTVETLYLSGNQIGAEGAIalAKALQGNTTLTSLDlsVNRIGDEGAIALA 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1027 GELPAVRDLKKLEFALGPIsGPQAFPKLVRILTAFSSLQHLDLdalSENKIGDEGVSQLsATFPQL-KSLETLNLSQNSI 1105
Cdd:COG5238 314 EGLQGNKTLHTLNLAYNGI-GAQGAIALAKALQENTTLHSLDL---SDNQIGDEGAIAL-AKYLEGnTTLRELNLGKNNI 388
|
250
....*....|..
gi 1622915359 1106 TDLGAYKLAEGL 1117
Cdd:COG5238 389 GKQGAEALIDAL 400
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
1058-1183 |
1.11e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.08 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1058 LTAFSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNSITDLGAY-----KLAE-GLpslaasllrlslYN 1131
Cdd:COG4886 109 LSNLTNLESLDL---SGNQLTD-----LPEELANLTNLKELDLSNNQLTDLPEPlgnltNLKSlDL------------SN 168
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1622915359 1132 NCIcdmgaESLARVLPDMVSLRVMDVQYNKFTAagaqqLAASLRKCPHVETL 1183
Cdd:COG4886 169 NQL-----TDLPEELGNLTNLKELDLSNNQITD-----LPEPLGNLTNLEEL 210
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
1058-1108 |
1.23e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.08 E-value: 1.23e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1622915359 1058 LTAFSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNSITDL 1108
Cdd:COG4886 201 LGNLTNLEELDL---SGNQLTD-----LPEPLANLTNLETLDLSNNQLTDL 243
|
|
| NLRC4_HD2 |
pfam17776 |
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
791-896 |
1.68e-04 |
|
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.
Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 42.66 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 791 LQCFLGALWLALSGEIKDKELPQYLaLTPRKKRPYDNWLEGVP-----------RFLTGLIFQPRARCLGALVGPSATAf 859
Cdd:pfam17776 4 FQEFFAALFYVLSFKEEKSNPLKEF-FGLRKRESLKSLLDKALksknghldlflRFLFGLLNEENQRLLEGLLGCKLSS- 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1622915359 860 adRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEE 896
Cdd:pfam17776 82 --EIKQELLQWIKSLIQKELSSERFLNLFHCLYELQD 116
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
1072-1183 |
2.89e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 44.78 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915359 1072 LSENKIGDEGVSQLS-ATFPQLKSLETLNLSQNSITDLGAYKLAEGLPSLAASLLRLSLyNNCICDMGAESLARVLPDMV 1150
Cdd:COG5238 158 LLGLAARLGLLAAISmAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLK-RNPIGDEGAEILAEALKGNK 236
|
90 100 110
....*....|....*....|....*....|...
gi 1622915359 1151 SLRVMDVQYNKFTAAGAQQLAASLRKCPHVETL 1183
Cdd:COG5238 237 SLTTLDLSNNQIGDEGVIALAEALKNNTTVETL 269
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
1035-1110 |
8.00e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 43.38 E-value: 8.00e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622915359 1035 LKKLEFALGPISG-PQAFPKLvriltafSSLQHLDLdalSENKIGDegvsqLSATFPQLKSLETLNLSQNSITDLGA 1110
Cdd:COG4886 161 LKSLDLSNNQLTDlPEELGNL-------TNLKELDL---SNNQITD-----LPEPLGNLTNLEELDLSGNQLTDLPE 222
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
1092-1117 |
1.52e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.00 E-value: 1.52e-03
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
1151-1175 |
1.57e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.00 E-value: 1.57e-03
|
| |
