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Conserved domains on  [gi|1622915274|ref|XP_028697115|]
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centriolar coiled-coil protein of 110 kDa isoform X8 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CaM_bind pfam16025
Calcium-dependent calmodulin binding; This domain is found at the N-terminus of centriolar ...
 29-106 1.71e-22

Calcium-dependent calmodulin binding; This domain is found at the N-terminus of centriolar coiled-coil protein of 110 kDa (CCP110), where it binds calmodulin. Binding of calmodulin to this domain is calcium dependent.


:

Pssm-ID: 464981  Cd Length: 78  Bit Score: 92.01  E-value: 1.71e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622915274  29 QSESISLIRFHGVAILSPLLNVEKRREMQQEKQKALDVEARKQVNRKKTLLTRVQEILDNVQVRKAPNASDFDQWEME 106
Cdd:pfam16025   1 ESEFVSCIKINGVPILPPLMTDEKREEMQQYRQKAIAIEERLRKQRKAALLIRVQEILKNEQRRKLPTLEQTSTLDAE 78
Stathmin super family cl02980
Stathmin family; The Stathmin family of proteins play an important role in the regulation of ...
 638-704 1.28e-03

Stathmin family; The Stathmin family of proteins play an important role in the regulation of the microtubule cytoskeleton. They regulate microtubule dynamics by promoting depolymerization of microtubules and/or preventing polymerization of tubulin heterodimers.


The actual alignment was detected with superfamily member pfam00836:

Pssm-ID: 459956 [Multi-domain]  Cd Length: 136  Bit Score: 40.02  E-value: 1.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 638 SKESEELLKSKMLAFEEMRKRLEeqhAQQLSLLIAEQEREQERLQKEIEEQE---KMLKEKKAMTAEASE 704
Cdd:pfam00836  40 KDSSLEEIQKKLEAAEERRKSLE---AQKLKQLAEKREKEEEALQKADEENNnfsKMAEEKLKQKMEAYK 106
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 639-808 3.01e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 639 KESEELLKSKMLAFEEMRKRLEEQhAQQLSLLIAEQEREQERLQKEIEEQEKMLKE-KKAMTAEASELDinsavELEWRK 717
Cdd:COG4942   149 REQAEELRADLAELAALRAELEAE-RAELEALLAELEEERAALEALKAERQKLLARlEKELAELAAELA-----ELQQEA 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 718 ISDSSLLETmLSQADSLHTSNSNSSGFTNSALQYSFvsaneaPfylwgssTSGltklSVTRPFGRAKTrwSQVFSP--EI 795
Cdd:COG4942   223 EELEALIAR-LEAEAAAAAERTPAAGFAALKGKLPW------P-------VSG----RVVRRFGERDG--GGGRNKgiDI 282

                         170
                  ....*....|....
gi 1622915274 796 QAKFN-KITAVAKG 808
Cdd:COG4942   283 AAPPGaPVRAVADG 296
 
Name Accession Description Interval E-value
CaM_bind pfam16025
Calcium-dependent calmodulin binding; This domain is found at the N-terminus of centriolar ...
 29-106 1.71e-22

Calcium-dependent calmodulin binding; This domain is found at the N-terminus of centriolar coiled-coil protein of 110 kDa (CCP110), where it binds calmodulin. Binding of calmodulin to this domain is calcium dependent.


Pssm-ID: 464981  Cd Length: 78  Bit Score: 92.01  E-value: 1.71e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622915274  29 QSESISLIRFHGVAILSPLLNVEKRREMQQEKQKALDVEARKQVNRKKTLLTRVQEILDNVQVRKAPNASDFDQWEME 106
Cdd:pfam16025   1 ESEFVSCIKINGVPILPPLMTDEKREEMQQYRQKAIAIEERLRKQRKAALLIRVQEILKNEQRRKLPTLEQTSTLDAE 78
Stathmin pfam00836
Stathmin family; The Stathmin family of proteins play an important role in the regulation of ...
 638-704 1.28e-03

Stathmin family; The Stathmin family of proteins play an important role in the regulation of the microtubule cytoskeleton. They regulate microtubule dynamics by promoting depolymerization of microtubules and/or preventing polymerization of tubulin heterodimers.


Pssm-ID: 459956 [Multi-domain]  Cd Length: 136  Bit Score: 40.02  E-value: 1.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 638 SKESEELLKSKMLAFEEMRKRLEeqhAQQLSLLIAEQEREQERLQKEIEEQE---KMLKEKKAMTAEASE 704
Cdd:pfam00836  40 KDSSLEEIQKKLEAAEERRKSLE---AQKLKQLAEKREKEEEALQKADEENNnfsKMAEEKLKQKMEAYK 106
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 639-808 3.01e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 639 KESEELLKSKMLAFEEMRKRLEEQhAQQLSLLIAEQEREQERLQKEIEEQEKMLKE-KKAMTAEASELDinsavELEWRK 717
Cdd:COG4942   149 REQAEELRADLAELAALRAELEAE-RAELEALLAELEEERAALEALKAERQKLLARlEKELAELAAELA-----ELQQEA 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 718 ISDSSLLETmLSQADSLHTSNSNSSGFTNSALQYSFvsaneaPfylwgssTSGltklSVTRPFGRAKTrwSQVFSP--EI 795
Cdd:COG4942   223 EELEALIAR-LEAEAAAAAERTPAAGFAALKGKLPW------P-------VSG----RVVRRFGERDG--GGGRNKgiDI 282

                         170
                  ....*....|....
gi 1622915274 796 QAKFN-KITAVAKG 808
Cdd:COG4942   283 AAPPGaPVRAVADG 296
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 653-702 3.39e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.95  E-value: 3.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 653 EEMRKRLEEQHAQQLSL-LIAEQER----EQERL-----QKEIEEQEKMLKEKKAMTAEA 702
Cdd:PRK09510   78 EEQRKKKEQQQAEELQQkQAAEQERlkqlEKERLaaqeqKKQAEEAAKQAALKQKQAEEA 137
GBP_C cd16269
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ...
 609-709 8.04e-03

Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.


Pssm-ID: 293879 [Multi-domain]  Cd Length: 291  Bit Score: 39.48  E-value: 8.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 609 TEQERQHLPEKRypKGSVFINKNKILGTSSKESEELLKSKMLAFEEMRKRLEEQHAQQLSLLIAEQEREQERLQKeieEQ 688
Cdd:cd16269   194 TEKEKEIEAERA--KAEAAEQERKLLEEQQRELEQKLEDQERSYEEHLRQLKEKMEEERENLLKEQERALESKLK---EQ 268

                          90       100
                  ....*....|....*....|.
gi 1622915274 689 EKMLKEKKAMTAEASELDINS 709
Cdd:cd16269   269 EALLEEGFKEQAELLQEEIRS 289
 
Name Accession Description Interval E-value
CaM_bind pfam16025
Calcium-dependent calmodulin binding; This domain is found at the N-terminus of centriolar ...
 29-106 1.71e-22

Calcium-dependent calmodulin binding; This domain is found at the N-terminus of centriolar coiled-coil protein of 110 kDa (CCP110), where it binds calmodulin. Binding of calmodulin to this domain is calcium dependent.


Pssm-ID: 464981  Cd Length: 78  Bit Score: 92.01  E-value: 1.71e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622915274  29 QSESISLIRFHGVAILSPLLNVEKRREMQQEKQKALDVEARKQVNRKKTLLTRVQEILDNVQVRKAPNASDFDQWEME 106
Cdd:pfam16025   1 ESEFVSCIKINGVPILPPLMTDEKREEMQQYRQKAIAIEERLRKQRKAALLIRVQEILKNEQRRKLPTLEQTSTLDAE 78
Stathmin pfam00836
Stathmin family; The Stathmin family of proteins play an important role in the regulation of ...
 638-704 1.28e-03

Stathmin family; The Stathmin family of proteins play an important role in the regulation of the microtubule cytoskeleton. They regulate microtubule dynamics by promoting depolymerization of microtubules and/or preventing polymerization of tubulin heterodimers.


Pssm-ID: 459956 [Multi-domain]  Cd Length: 136  Bit Score: 40.02  E-value: 1.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 638 SKESEELLKSKMLAFEEMRKRLEeqhAQQLSLLIAEQEREQERLQKEIEEQE---KMLKEKKAMTAEASE 704
Cdd:pfam00836  40 KDSSLEEIQKKLEAAEERRKSLE---AQKLKQLAEKREKEEEALQKADEENNnfsKMAEEKLKQKMEAYK 106
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 639-808 3.01e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 639 KESEELLKSKMLAFEEMRKRLEEQhAQQLSLLIAEQEREQERLQKEIEEQEKMLKE-KKAMTAEASELDinsavELEWRK 717
Cdd:COG4942   149 REQAEELRADLAELAALRAELEAE-RAELEALLAELEEERAALEALKAERQKLLARlEKELAELAAELA-----ELQQEA 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 718 ISDSSLLETmLSQADSLHTSNSNSSGFTNSALQYSFvsaneaPfylwgssTSGltklSVTRPFGRAKTrwSQVFSP--EI 795
Cdd:COG4942   223 EELEALIAR-LEAEAAAAAERTPAAGFAALKGKLPW------P-------VSG----RVVRRFGERDG--GGGRNKgiDI 282

                         170
                  ....*....|....
gi 1622915274 796 QAKFN-KITAVAKG 808
Cdd:COG4942   283 AAPPGaPVRAVADG 296
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 653-702 3.39e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.95  E-value: 3.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 653 EEMRKRLEEQHAQQLSL-LIAEQER----EQERL-----QKEIEEQEKMLKEKKAMTAEA 702
Cdd:PRK09510   78 EEQRKKKEQQQAEELQQkQAAEQERlkqlEKERLaaqeqKKQAEEAAKQAALKQKQAEEA 137
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 643-770 6.25e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.20  E-value: 6.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 643 ELLKSKMLAFEEMRKRLEEQhAQQLSLLIAEQEREQERLQKEIEEQEKML----KEKKAMTAEASELDINSAVELEWRKI 718
Cdd:COG3883   136 EELKADKAELEAKKAELEAK-LAELEALKAELEAAKAELEAQQAEQEALLaqlsAEEAAAEAQLAELEAELAAAEAAAAA 214

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1622915274 719 SDSSLLETMLSQADSLHTSNSNSSGFTNSALQYSFVSANEAPFYLWGSSTSG 770
Cdd:COG3883   215 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAAG 266
GBP_C pfam02841
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ...
 630-708 7.04e-03

Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460721 [Multi-domain]  Cd Length: 297  Bit Score: 39.58  E-value: 7.04e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622915274 630 KNKILGTSSKESEELLKSKMLAFEEMRKRLEEQHAQQLSLLIAEQEREQERLQKeieEQEKMLKEKKAMTAEASELDIN 708
Cdd:pfam02841 219 EQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREQLLAEQERMLEHKLQ---EQEELLKEGFKTEAESLQKEIQ 294
GBP_C cd16269
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ...
 609-709 8.04e-03

Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.


Pssm-ID: 293879 [Multi-domain]  Cd Length: 291  Bit Score: 39.48  E-value: 8.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622915274 609 TEQERQHLPEKRypKGSVFINKNKILGTSSKESEELLKSKMLAFEEMRKRLEEQHAQQLSLLIAEQEREQERLQKeieEQ 688
Cdd:cd16269   194 TEKEKEIEAERA--KAEAAEQERKLLEEQQRELEQKLEDQERSYEEHLRQLKEKMEEERENLLKEQERALESKLK---EQ 268

                          90       100
                  ....*....|....*....|.
gi 1622915274 689 EKMLKEKKAMTAEASELDINS 709
Cdd:cd16269   269 EALLEEGFKEQAELLQEEIRS 289
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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