|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
109-313 |
6.12e-99 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 288.35 E-value: 6.12e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 109 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvdlataciqhlqliaekhkgeehrkale 188
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 189 dftldnilsHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLVQQMISLANNHR 268
Cdd:cd19492 48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1622878702 269 LAVILTNQMTTKIDKN-QALLVPALGESWGHAATIRLIFHWDRKQR 313
Cdd:cd19492 119 LAVVLTNQVTTKISEDgQSQLVPALGESWSHACTTRLFLTWDEKQR 164
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
110-308 |
1.17e-48 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 160.60 E-value: 1.17e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 110 KTTEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGSFMVDRVVDLATACIQhlqliaekhkgeehrkalED 189
Cdd:cd01393 2 KITEIYGPPGSGKTQLALQLAANALLLG------GGVVWIDTEGAFPPSRLVQILEASPS------------------SE 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 190 FTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD-------LSLRTRLLNGLVQQMIS 262
Cdd:cd01393 58 LELAEALSRLLYFRPPDTLAHLLALDSLPESLFPPPNTSLVVVDSVSALFRKAFPRggdgdssSSLRARLLSQLARALQK 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1622878702 263 LANNHRLAVILTNQMTTKID--KNQALLVPALGESWGHAATIRLIFHW 308
Cdd:cd01393 138 LAAQFNLAVVVTNQVTTKIRggSGASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
12-313 |
1.04e-44 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 154.52 E-value: 1.04e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 12 PAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRResltnkpryagTSESGKKCTALELLEQEHTQGFI 91
Cdd:TIGR02236 9 PATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARK-----------AADLGGFETADDVLERRKTIGKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 92 ITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhl 171
Cdd:TIGR02236 78 TTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA------- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 172 qliaekhkgeEHRKALEDFTLDNilshIYYFRCRDYTELLAQVYLLPDFLSEHSK-VRLVIVDGIAFPFRHDL---DDLS 247
Cdd:TIGR02236 151 ----------EARGLDPDEVLKN----IYVARAYNSNHQMLLVEKAEDLIKELNNpVKLLIVDSLTSHFRAEYvgrGALA 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 248 LRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDknqAL----LVPALGESWGHAATIRLifhWDRKQR 313
Cdd:TIGR02236 217 ERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTRPIGGHILGHAATFRV---YLRKGK 280
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
1-313 |
3.42e-44 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 153.11 E-value: 3.42e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 1 MQRDLVSFP-LSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALetlQIIR--RESLTnkpryAGTSEsgkkcT 77
Cdd:PRK04301 4 KEKDLEDLPgVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAA---KIIEaaREAAD-----IGGFE-----T 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 78 ALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 157
Cdd:PRK04301 71 ALEVLERRKNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 158 DRVVDLAtaciqhlqliaekhkgeEHRKALEDFTLDNilshIYYFRCR--DYTELLAQVylLPDFLSEHSKVRLVIVDGI 235
Cdd:PRK04301 151 ERIEQMA-----------------EALGLDPDEVLDN----IHVARAYnsDHQMLLAEK--AEELIKEGENIKLVIVDSL 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 236 AFPFRHD---LDDLSLRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDknqAL----LVPALGESWGHAATIRLifhW 308
Cdd:PRK04301 208 TAHFRAEyvgRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTQPIGGHILGHTATFRI---Y 281
|
....*
gi 1622878702 309 DRKQR 313
Cdd:PRK04301 282 LRKSK 286
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
98-304 |
5.42e-44 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 150.91 E-value: 5.42e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 98 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLatACIQHLQLIAEK 177
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQL--ASSLPKRYHLEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 178 HKgeehrkaledftldNILSHIYYFRCRDYTELLAQV-YLLPDFLsEHSKVRLVIVDGIAFPFRHDLD----DLSLRTRL 252
Cdd:cd19491 79 AK--------------NFLDNIFVEHVADLETLEHCLnYQLPALL-ERGPIRLVVIDSIAALFRSEFDtsrsDLVERAKY 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622878702 253 LNGLVQQMISLANNHRLAVILTNQMTTKIDKN-----------------------QALLVPALGESWGHAATIRL 304
Cdd:cd19491 144 LRRLADHLKRLADKYNLAVVVVNQVTDRFDSSsdasglgvldylsqfssfsggvsGNRKVPALGLTWANLVNTRL 218
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
77-313 |
1.52e-39 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 139.36 E-value: 1.52e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 77 TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 156
Cdd:pfam08423 5 TATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 157 VDRVVDlataciqhlqlIAEKHK--GEEhrkaledfTLDNILShiyyfrCRDYT-----ELLAQvylLPDFLSEhSKVRL 229
Cdd:pfam08423 85 PERLVA-----------IAERYGldPED--------VLDNVAY------ARAYNsehqmQLLQQ---AAAMMSE-SRFAL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 230 VIVDGIAFPFRHD---LDDLSLRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQALLV-----PALGESWGHAAT 301
Cdd:pfam08423 136 LIVDSATALYRTDfsgRGELAERQQHLAKFLRTLQRLADEFGVAVVITNQVVAQVDGAAGMFSgdpkkPIGGHIMAHAST 215
|
250
....*....|..
gi 1622878702 302 IRLIFhwdRKQR 313
Cdd:pfam08423 216 TRLSL---RKGR 224
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
99-312 |
8.31e-37 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 131.29 E-value: 8.31e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 99 DDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliAEKH 178
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIA----------EARF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 179 KGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHD----LDDLSLRTRLLN 254
Cdd:cd19493 71 PEAFSGFMEENERAEEMLKRVAVVRVTTLAQLLERLPNLEEHILSS-GVRLVVIDSIAALVRREfggsDGEVTERHNALA 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622878702 255 GLVQQMISLANNHRLAVILTNQMTTKIDKNQ---ALLVPALGESWGHAATIRLIFHWDRKQ 312
Cdd:cd19493 150 REASSLKRLAEEFRIAVLVTNQATTHFGDAGdgsSGVTAALGDAWAHAVNTRLRLERCLLQ 210
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
91-313 |
6.38e-34 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 124.01 E-value: 6.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 91 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqh 170
Cdd:cd19514 1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRP-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 171 lqlIAEKHkGEEHRKAledftLDNILshiyYFRCrdYT-----ELLAQVyllPDFLSEHSKVRLVIVDGIAFPFRHDLD- 244
Cdd:cd19514 73 ---IAERF-GVDHDAV-----LDNIL----YARA--YTsehqmELLDYV---AAKFHEEAVFRLLIIDSIMALFRVDFSg 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622878702 245 --DLSLRTRLLNGLVQQMISLANNHRLAVILTNQMTTkiDKNQALLV------PALGESWGHAATIRLIFhwdRKQR 313
Cdd:cd19514 135 rgELAERQQKLAQMLSRLQKISEEYNVAVFITNQVTA--DPGAAMTFqadpkkPIGGHILAHASTTRISL---RKGR 206
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
91-306 |
3.08e-33 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 122.09 E-value: 3.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 91 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqh 170
Cdd:cd19515 1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 171 lqliaeKHKGEEhrkaledftLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDL---DDLS 247
Cdd:cd19515 75 ------KALGLD---------PDEVLDNIYVARAYNSNHQMLLVEKAEDLIKEGNNIKLLIVDSLTSHFRAEYvgrGTLA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 248 LRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQAL-LVPALGESWGHAATIRLIF 306
Cdd:cd19515 140 ERQQKLNKHLHDLHRLADLYNIAVLVTNQVMAKPDAFFGDpTQAIGGHILGHAATFRVYL 199
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
17-304 |
9.38e-32 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 120.87 E-value: 9.38e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 17 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRESLTNKpryagtsesgkkCTALELLEQEHTQGFIITFCS 96
Cdd:PTZ00035 38 KLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGF------------ISATEYLEARKNIIRITTGST 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 97 ALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAE 176
Cdd:PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ-----------IAE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 177 KHK--GEEhrkaledfTLDNILshiyYFRCrdYT-----ELLAQVyllPDFLSEhSKVRLVIVDGIAFPFRHDLD---DL 246
Cdd:PTZ00035 175 RFGldPED--------VLDNIA----YARA--YNhehqmQLLSQA---AAKMAE-ERFALLIVDSATALFRVDYSgrgEL 236
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622878702 247 SLRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQALL----VPALGESWGHAATIRL 304
Cdd:PTZ00035 237 AERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVadpkKPIGGHIIAHASTTRL 298
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
17-313 |
4.12e-30 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 116.03 E-value: 4.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 17 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIirresltnkpryAGTSESGKKCTALELLEQEHTQGFIITFCS 96
Cdd:TIGR02238 16 KLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEA------------ASKIINPGFITAFEISQKRKKVLKITTGSQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 97 ALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAE 176
Cdd:TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-----------IAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 177 KHkGEEHrkaleDFTLDNILshiyYFRCRDYTELLAQVYLLPDFLSEhSKVRLVIVDGIAFPFRHDLD---DLSLRTRLL 253
Cdd:TIGR02238 153 RF-GVDP-----DAVLDNIL----YARAYTSEHQMELLDYLAAKFSE-EPFRLLIVDSIMALFRVDFSgrgELSERQQKL 221
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622878702 254 NGLVQQMISLANNHRLAVILTNQMTTkiDKNQALLV------PALGESWGHAATIRLIFhwdRKQR 313
Cdd:TIGR02238 222 AQMLSRLNKISEEFNVAVFVTNQVQA--DPGATMTFiadpkkPIGGHVLAHASTTRILL---RKGR 282
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
91-313 |
8.94e-30 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 113.01 E-value: 8.94e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 91 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqh 170
Cdd:cd01123 1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 171 lqliaeKHKGEEHrkaledftlDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhSKVRLVIVDGIAFPFRHDLD---DLS 247
Cdd:cd01123 75 ------QRFGLDP---------DDVLDNVAYARAFNSDHQTQLLDQAAAMMVE-SRFKLLIVDSATALYRTDYSgrgELS 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 248 LRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQALLV----PALGESWGHAATIRLIFhwdRKQR 313
Cdd:cd01123 139 ARQMHLAKFLRMLQRLADEFGVAVVVTNQVVAQVDGAMMFAAdpkkPIGGNILAHASTTRLYL---RKGR 205
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
17-313 |
3.37e-29 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 114.10 E-value: 3.37e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 17 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRResLTNkpryagtsesGKKCTALELLEQEHTQGFIITFCS 96
Cdd:PLN03187 46 KLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEK--LLN----------QGFITGSDALLKRKSVVRITTGSQ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 97 ALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliae 176
Cdd:PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA------------ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 177 khkgeehrkalEDFTLDN--ILSHIYYFRCRDYTELLAQVYLLPDFLSEHSkVRLVIVDGIAFPFRHDL---DDLSLRTR 251
Cdd:PLN03187 182 -----------ERFGMDAdaVLDNIIYARAYTYEHQYNLLLGLAAKMAEEP-FRLLIVDSVIALFRVDFtgrGELAERQQ 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622878702 252 LLNGLVQQMISLANNHRLAVILTNQ-------MTTKIDKNQallvPALGESWGHAATIRLIFhwdRKQR 313
Cdd:PLN03187 250 KLAQMLSRLTKIAEEFNVAVYMTNQviadpggGMFISDPKK----PAGGHVLAHAATIRLML---RKGK 311
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
17-313 |
5.94e-28 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 110.59 E-value: 5.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 17 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQiirresLTNKPRYAGTsesgkkCTALELLEQEHTQGFIITFCS 96
Cdd:PLN03186 43 KLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILE------AASKLVPLGF------TTASQLHAQRQEIIQITTGSR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 97 ALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAE 176
Cdd:PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-----------IAE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 177 KhkgeehrkaledFTLD--NILSHIYYFRCRDyTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSLRTR 251
Cdd:PLN03186 180 R------------FGLNgaDVLENVAYARAYN-TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSgrgELSARQM 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622878702 252 LLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQ----ALLVPALGESWGHAATIRLifhWDRKQR 313
Cdd:PLN03186 247 HLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAffagPQLKPIGGNIMAHASTTRL---ALRKGR 309
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
113-307 |
2.85e-25 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 100.89 E-value: 2.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 113 EICGAPGVGKTQLCMQLAVDVQIPECFGGVA-----GEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRkal 187
Cdd:cd19490 5 EITGPSGSGKTELLYHLAARCILPSSWGGVPlggleAAVVFIDTDGRFDILRLRSILEARIRAAIQAANSSDDEEDV--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 188 eDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFL---SEHSKVRLVIVDGIAFPFRHD-------LDDLSLRTRLLNGLV 257
Cdd:cd19490 82 -EEIARECLQRLHIFRCHSSLQLLATLLSLENYLlslSANPELGLLLIDSISAFYWQDrfsaelaRAAPLLQEAALRAIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622878702 258 QQMISLANNHRLAVILTNQM--------TTKIDKNQALLVP-------ALGESWGHAATIRLIFH 307
Cdd:cd19490 161 RELRRLRRRFQLVVIATKQAlfpgksasTDNPAANNAVSKAsapshreYLPRPWQRLVTHRLVLS 225
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
91-284 |
5.39e-25 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 99.94 E-value: 5.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 91 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGsFMVDRVVDLATaciqh 170
Cdd:PRK09361 5 LPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG------KKVIYIDTEG-LSPERFKQIAG----- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 171 lqliaekhkgeehrkalEDFtlDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhsKVRLVIVDGIAFPFRHDLDDLSLRT 250
Cdd:PRK09361 73 -----------------EDF--EELLSNIIIFEPSSFEEQSEAIRKAEKLAKE--NVGLIVLDSATSLYRLELEDEEDNS 131
|
170 180 190
....*....|....*....|....*....|....*..
gi 1622878702 251 RLLNGLVQQM---ISLANNHRLAVILTNQMTTKIDKN 284
Cdd:PRK09361 132 KLNRELGRQLthlLKLARKHDLAVVITNQVYSDIDSD 168
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
17-313 |
1.06e-24 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 101.34 E-value: 1.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 17 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLqiirresltnkpryagtSESGKK-----CTALELLEQEHTQGFI 91
Cdd:TIGR02239 16 KLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKIL-----------------AEAAKLvpmgfTTATEFHQRRQEVIQL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 92 ITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhl 171
Cdd:TIGR02239 79 TTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLA--------- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 172 qlIAEKHK--GEEhrkaledfTLDNIlSHIYYFRCRDYTELLAQVYLLpdfLSEhSKVRLVIVDGIAFPFRHDLD---DL 246
Cdd:TIGR02239 150 --IAERYGlnPED--------VLDNV-AYARAYNTDHQLQLLQQAAAM---MSE-SRFALLIVDSATALYRTDFSgrgEL 214
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622878702 247 SLRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQALLV-----PALGESWGHAATIRLIFhwdRKQR 313
Cdd:TIGR02239 215 SARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAgdpkkPIGGNIMAHASTTRLSL---RKGR 283
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
91-313 |
3.26e-24 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 98.16 E-value: 3.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 91 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRvvdlataciqh 170
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 171 LQLIAEKHK--GEEhrkaledfTLDNIlSHIYYFRCRDYTELLAQVYLLpdfLSEhSKVRLVIVDGIAFPFRHDLD---D 245
Cdd:cd19513 70 LLAIAERYGlnGED--------VLDNV-AYARAYNTDHQMQLLIQASAM---MAE-SRYALLIVDSATALYRTDYSgrgE 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622878702 246 LSLRTRLLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQALLVPAL----GESWGHAATIRLIFhwdRKQR 313
Cdd:cd19513 137 LSARQMHLAKFLRMLQRLADEFGVAVVITNQVVAQVDGAAMFAGDPKkpigGNIMAHASTTRLYL---RKGR 205
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
91-289 |
4.04e-24 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 97.38 E-value: 4.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 91 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVqipecfGGVAGEAVFIDTEGsFMVDRVVDLAtaciqh 170
Cdd:cd01394 1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQIA------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 171 lqliaekhkGEEHRKaledftldnILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHDLDDLSLRT 250
Cdd:cd01394 68 ---------GERFES---------IASNIIVFEPYSFDEQGVAIQEAEKLLKSD-KVDLVVVDSATALYRLELGDDSEAN 128
|
170 180 190
....*....|....*....|....*....|....*....
gi 1622878702 251 RLLNGLVQQMISLANNHRLAVILTNQMTTKIDKNQALLV 289
Cdd:cd01394 129 RELSRQMSKLLSIARKYDIPVVITNQVYSDIDDDRLKPV 167
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
103-306 |
2.19e-23 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 95.40 E-value: 2.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 103 GGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQipeCFGGVAgeAVFIDTEGSFMVDRVVDLATACIQHLQLIAEkhkgee 182
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANVA---SRSGQN--VLYIDTKSSFSARRLAQILKSRAQDAEEIDK------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 183 hrkaledftldnILSHIYYFRCRDYTELLAQVYLLPDFLS-----EHSKVRLVIVDGIAFPFRHDLDDLSLR--TRLLNG 255
Cdd:cd19489 70 ------------ALQRIRVVRVFDPYELLDLLEELRNTLSqqqenLYSRLKLVIIDSLSALISPLLGGSKHSegHALLAS 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622878702 256 LVQQMISLANNHRLAVILTNQMTTKID-KNQALLVPALGESWGHAATIRLIF 306
Cdd:cd19489 138 LARLLKKLAAEYQIAVLVTNLTVRGGDgGQQGSTKPALGEYWESVPSTRLLL 189
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
98-304 |
1.56e-16 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 76.69 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 98 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQipecfgGVAGEAVFIDTEGsFMVDRVVDLATAciqhlqliaek 177
Cdd:TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAED----------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 178 hkgeehrkaledfTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHDL-DDLSLRTRLLNGL 256
Cdd:TIGR02237 63 -------------RPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELsDDRISRNRELARQ 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622878702 257 VQQMISLANNHRLAVILTNQMTTKIDKNQALlvPALGESWGHA--ATIRL 304
Cdd:TIGR02237 129 LTLLLSLARKKNLAVVITNQVYTDVNNGTLR--PLGGHLLEHWskVILRL 176
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
98-279 |
9.68e-08 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 51.84 E-value: 9.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 98 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDvqipecfGGVAGE-AVFIDTEGSfmVDRVVDLAtaciqhlqliae 176
Cdd:COG0467 9 LDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAE-------GLRRGEkGLYVSFEES--PEQLLRRA------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 177 KHKGEEHRKALEDFTLdNILSHIYYFRCRDYTELLAQvylLPDFLSEHsKVRLVIVDGIAfPFRHDLDDLSLRTRLLNGL 256
Cdd:COG0467 68 ESLGLDLEEYIESGLL-RIIDLSPEELGLDLEELLAR---LREAVEEF-GAKRVVIDSLS-GLLLALPDPERLREFLHRL 141
|
170 180
....*....|....*....|...
gi 1622878702 257 vqqmISLANNHRLAVILTNQMTT 279
Cdd:COG0467 142 ----LRYLKKRGVTTLLTSETGG 160
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
91-155 |
1.82e-07 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 51.71 E-value: 1.82e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622878702 91 IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPecfGGVageAVFIDTEGSF 155
Cdd:COG0468 44 ISTGSLALDIALGvGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA---GGI---AAFIDAEHAL 103
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
89-274 |
4.81e-06 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 46.22 E-value: 4.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 89 GFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDV--QIPECFGGVAGEA---VFIDTEGSFmvDRVVDL 163
Cdd:pfam13481 13 DGLAAPPPPRRWLIKGLLPAGGLGLLAGAPGTGKTTLALDLAAAVatGKPWLGGPRVPEQgkvLYVSAEGPA--DELRRR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 164 ATACIQHLQLIAEK--HKGEEHRKALEDFTLDNILShiyyfrcRDYTELLAQVYLLPDflsehskVRLVIVDGIAFPFRH 241
Cdd:pfam13481 91 LRAAGADLDLPARLlfLSLVESLPLFFLDRGGPLLD-------ADVDALEAALEEVED-------PDLVVIDPLARALGG 156
|
170 180 190
....*....|....*....|....*....|...
gi 1622878702 242 DLDDLSLRTRLLNGLVQqmisLANNHRLAVILT 274
Cdd:pfam13481 157 DENSNSDVGRLVKALDR----LARRTGATVLLV 185
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
98-128 |
5.17e-05 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 44.49 E-value: 5.17e-05
10 20 30
....*....|....*....|....*....|.
gi 1622878702 98 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQ 128
Cdd:PRK09302 20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQ 50
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
98-131 |
6.17e-05 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 43.39 E-value: 6.17e-05
10 20 30
....*....|....*....|....*....|....
gi 1622878702 98 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAV 131
Cdd:pfam06745 8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLY 41
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
98-131 |
2.85e-04 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 41.48 E-value: 2.85e-04
10 20 30
....*....|....*....|....*....|....
gi 1622878702 98 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAV 131
Cdd:cd01124 8 LDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLY 41
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
98-128 |
3.45e-04 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 41.20 E-value: 3.45e-04
10 20 30
....*....|....*....|....*....|.
gi 1622878702 98 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQ 128
Cdd:cd19485 8 FDDITHGGLPKGRPTLICGTAGTGKTLFAAQ 38
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
90-155 |
6.47e-04 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 40.62 E-value: 6.47e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622878702 90 FIITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIpecFGGVageAVFIDTEGSF 155
Cdd:cd00983 4 VIPTGSLSLDIALGiGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK---LGGT---AAFIDAEHAL 64
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
101-273 |
3.21e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 38.73 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 101 ILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGV---AGEAVFIDTEGSF--MVDRVVDLATACiqhlqlia 175
Cdd:COG3598 5 LVPGLLPEGGVTLLAGPPGTGKSFLALQLAAAVAAGGPWLGRrvpPGKVLYLAAEDDRgeLRRRLKALGADL-------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622878702 176 ekhkgeehrkaleDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLsEHSKVRLVIVDGIAFPFRHDLDDlslrtrllNG 255
Cdd:COG3598 77 -------------GLPFADLDGRLRLLSLAGDLDDTDDLEALERAI-EEEGPDLVVIDPLARVFGGDEND--------AE 134
|
170 180
....*....|....*....|..
gi 1622878702 256 LVQQMIS----LANNHRLAVIL 273
Cdd:COG3598 135 EMRAFLNpldrLAERTGAAVLL 156
|
|
| |
