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Conserved domains on  [gi|1622857258|ref|XP_028687963|]
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gastrokine-2 [Macaca mulatta]

Protein Classification

BRICHOS domain-containing protein( domain architecture ID 10660096)

BRICHOS domain-containing protein such as human gastrokines that may be involved in maintaining the integrity of the gastric mucosal epithelium

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BRICHOS smart01039
The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory ...
 69-165 4.20e-31

The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer; Its exact function is unknown; roles that have been proposed for the domain, which is about 100 amino acids long, include (a) targeting of the protein to the secretory pathway, (b) intramolecular chaperone-like function, and (c) assisting the specialised intracellular protease processing system. This C-terminal domain is embedded in the endoplasmic reticulum lumen, and binds to the N-terminal, transmembrane, SP_C, pfam08999 provided that it is in non-helical conformation. Thus the Brichos domain of proSP-C is a chaperone that induces alpha-helix formation of an aggregation-prone TM region.


:

Pssm-ID: 198107  Cd Length: 96  Bit Score: 108.13  E-value: 4.20e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622857258   69 HAGSCSSTTIFDYKHGYIASRVLSRGACFILKMDLQNTPPLNNLQRYSYEKQALdNIFSNKYTWVKYNPLESlIKDIDWF 148
Cdd:smart01039   1 FSGSDSWTVIHDFKNGLTAYRPLGKKKCYIKKMNKEVIPSLQSLLELLENKKMP-GGPYPKQTYYVVEPVVG-EKIKDLS 78

                           90
                   ....*....|....*..
gi 1622857258  149 LLGSPIEKLCKHIPLYK 165
Cdd:smart01039  79 FLGSPIAELCKGVPTYW 95
 
Name Accession Description Interval E-value
BRICHOS smart01039
The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory ...
 69-165 4.20e-31

The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer; Its exact function is unknown; roles that have been proposed for the domain, which is about 100 amino acids long, include (a) targeting of the protein to the secretory pathway, (b) intramolecular chaperone-like function, and (c) assisting the specialised intracellular protease processing system. This C-terminal domain is embedded in the endoplasmic reticulum lumen, and binds to the N-terminal, transmembrane, SP_C, pfam08999 provided that it is in non-helical conformation. Thus the Brichos domain of proSP-C is a chaperone that induces alpha-helix formation of an aggregation-prone TM region.


Pssm-ID: 198107  Cd Length: 96  Bit Score: 108.13  E-value: 4.20e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622857258   69 HAGSCSSTTIFDYKHGYIASRVLSRGACFILKMDLQNTPPLNNLQRYSYEKQALdNIFSNKYTWVKYNPLESlIKDIDWF 148
Cdd:smart01039   1 FSGSDSWTVIHDFKNGLTAYRPLGKKKCYIKKMNKEVIPSLQSLLELLENKKMP-GGPYPKQTYYVVEPVVG-EKIKDLS 78

                           90
                   ....*....|....*..
gi 1622857258  149 LLGSPIEKLCKHIPLYK 165
Cdd:smart01039  79 FLGSPIAELCKGVPTYW 95
BRICHOS pfam04089
BRICHOS domain; The BRICHOS domain is about 100 amino acids long. It is found in a variety of ...
 71-165 1.35e-25

BRICHOS domain; The BRICHOS domain is about 100 amino acids long. It is found in a variety of proteins implicated in dementia, respiratory distress and cancer. Its exact function is unknown; roles that have been proposed for it include (a) in targeting of the protein to the secretory pathway, (b) intramolecular chaperone-like function, and (c) assisting the specialized intracellular protease processing system. This C-terminal domain is embedded in the endoplasmic reticulum lumen, and binds to the N-terminal, transmembrane, SP_C, pfam08999, provided that it is in non-helical conformation. Thus the Brichos domain of proSP-C is a chaperone that induces alpha-helix formation of an aggregation-prone TM region.


Pssm-ID: 461168  Cd Length: 91  Bit Score: 93.91  E-value: 1.35e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622857258  71 GSCSSTTIFDYKHGYIASRVLSRGACFILKMDLQNTPPLNNLQRYSYEKQaLDNIFSNKYTWVkYNPLESLIKdiDWFLL 150
Cdd:pfam04089   1 GNDSATVIHDFKNGLTAYRDLSLKKCYIMKMDKSDVPPLQELLRLLENKE-EGEGPPPESLGV-YVPQTRPVK--DLSFL 76

                          90
                  ....*....|....*
gi 1622857258 151 GSPIEKLCKHIPLYK 165
Cdd:pfam04089  77 GSPIQELCRGLPTYW 91
 
Name Accession Description Interval E-value
BRICHOS smart01039
The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory ...
 69-165 4.20e-31

The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer; Its exact function is unknown; roles that have been proposed for the domain, which is about 100 amino acids long, include (a) targeting of the protein to the secretory pathway, (b) intramolecular chaperone-like function, and (c) assisting the specialised intracellular protease processing system. This C-terminal domain is embedded in the endoplasmic reticulum lumen, and binds to the N-terminal, transmembrane, SP_C, pfam08999 provided that it is in non-helical conformation. Thus the Brichos domain of proSP-C is a chaperone that induces alpha-helix formation of an aggregation-prone TM region.


Pssm-ID: 198107  Cd Length: 96  Bit Score: 108.13  E-value: 4.20e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622857258   69 HAGSCSSTTIFDYKHGYIASRVLSRGACFILKMDLQNTPPLNNLQRYSYEKQALdNIFSNKYTWVKYNPLESlIKDIDWF 148
Cdd:smart01039   1 FSGSDSWTVIHDFKNGLTAYRPLGKKKCYIKKMNKEVIPSLQSLLELLENKKMP-GGPYPKQTYYVVEPVVG-EKIKDLS 78

                           90
                   ....*....|....*..
gi 1622857258  149 LLGSPIEKLCKHIPLYK 165
Cdd:smart01039  79 FLGSPIAELCKGVPTYW 95
BRICHOS pfam04089
BRICHOS domain; The BRICHOS domain is about 100 amino acids long. It is found in a variety of ...
 71-165 1.35e-25

BRICHOS domain; The BRICHOS domain is about 100 amino acids long. It is found in a variety of proteins implicated in dementia, respiratory distress and cancer. Its exact function is unknown; roles that have been proposed for it include (a) in targeting of the protein to the secretory pathway, (b) intramolecular chaperone-like function, and (c) assisting the specialized intracellular protease processing system. This C-terminal domain is embedded in the endoplasmic reticulum lumen, and binds to the N-terminal, transmembrane, SP_C, pfam08999, provided that it is in non-helical conformation. Thus the Brichos domain of proSP-C is a chaperone that induces alpha-helix formation of an aggregation-prone TM region.


Pssm-ID: 461168  Cd Length: 91  Bit Score: 93.91  E-value: 1.35e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622857258  71 GSCSSTTIFDYKHGYIASRVLSRGACFILKMDLQNTPPLNNLQRYSYEKQaLDNIFSNKYTWVkYNPLESLIKdiDWFLL 150
Cdd:pfam04089   1 GNDSATVIHDFKNGLTAYRDLSLKKCYIMKMDKSDVPPLQELLRLLENKE-EGEGPPPESLGV-YVPQTRPVK--DLSFL 76

                          90
                  ....*....|....*
gi 1622857258 151 GSPIEKLCKHIPLYK 165
Cdd:pfam04089  77 GSPIQELCRGLPTYW 91
SF_P smart00019
Pulmonary surfactant proteins; Pulmonary surfactant associated proteins promote alveolar ...
 18-164 5.92e-04

Pulmonary surfactant proteins; Pulmonary surfactant associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-C, a component of surfactant, is a highly hydrophobic peptide of 35 amino acid residues which is processed from a larger precursor protein. SP-C is post-translationally modified by the covalent attachment of two palmitoyl groups on two adjacent cysteines


Pssm-ID: 128335 [Multi-domain]  Cd Length: 191  Bit Score: 38.81  E-value: 5.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622857258   18 ILVAFLVVLTIFGM--------QSHGYEVFNIispSSNGDNVQETVTIdNEKNTAIVNIHAGScSSTTIFDYKHGYIASR 89
Cdd:smart00019  40 VVVVVLVVVVIVGAllmglhmsQKHTEMVLEM---SIGAPEAQQRLAL-SERAGTTATFSIGS-TGIVVYDYQRLLIAYK 114

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622857258   90 VLSRGACFILKMDLQNTPPLNNLQRYSYEKQALDNIFSNKYTWVKYNPLESLIKDIDWFLLGSPIEKLCKHIPLY 164
Cdd:smart00019 115 PAPGTCCYIMKMAPESIPSLEALARKVQNFQAKPAVPTSKLGQEEGHDAGSASSGGDLAFLGMAVSTLCGEVPLY 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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