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Conserved domains on  [gi|1622856811|ref|XP_028687844|]
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trafficking protein particle complex subunit 12 isoform X2 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 547-692 1.42e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.74  E-value: 1.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 547 SRLGRVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 626
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 627 VLMNRAFLHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 692
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 89-211 2.12e-07

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.61  E-value: 2.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  89 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQdAAREAPGSEAARPEQEPPAAEPVPVCTIF 168
Cdd:PRK07764  376 ARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP-AAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1622856811 169 SQR------APPAPRDGFEPQMVK----SPSFGGASEAPARTPPQAVQPSPSL 211
Cdd:PRK07764  455 SPPpaaapsAQPAPAPAAAPEPTAapapAPPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03169 super family cl27451
hypothetical protein; Provisional
 3-163 7.53e-07

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 52.28  E-value: 7.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   3 DAGGGEETPAPEAPHPPQLAPPEEQGLlfHEETIDLGGDEFGSEENETASEGSSPladklnEHMMESVLISDSPN-NSEG 81
Cdd:PHA03169   92 PSGSGSESVGSPTPSPSGSAEELASGL--SPENTSGSSPESPASHSPPPSPPSHP------GPHEPAPPESHNPSpNQQP 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  82 DAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAP--EDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAA 159
Cdd:PHA03169  164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPpdEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243


                  ....
gi 1622856811 160 EPVP 163
Cdd:PHA03169  244 GPPF 247
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
96-331 8.37e-06

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 8.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  96 GGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPA 175
Cdd:PRK12323  367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 176 pRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTffGDAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPP 255
Cdd:PRK12323  447 -APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA--APAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 256 VSVPGTEGRPEPAAMRGPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMdrrNDAWLPGEATRGVLRAVAAQ 331
Cdd:PRK12323  524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM---FDGDWPALAARLPVRGLAQQ 596
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 547-692 1.42e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.74  E-value: 1.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 547 SRLGRVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 626
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 627 VLMNRAFLHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 692
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 89-211 2.12e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.61  E-value: 2.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  89 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQdAAREAPGSEAARPEQEPPAAEPVPVCTIF 168
Cdd:PRK07764  376 ARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP-AAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1622856811 169 SQR------APPAPRDGFEPQMVK----SPSFGGASEAPARTPPQAVQPSPSL 211
Cdd:PRK07764  455 SPPpaaapsAQPAPAPAAAPEPTAapapAPPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03169 PHA03169
hypothetical protein; Provisional
 3-163 7.53e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 52.28  E-value: 7.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   3 DAGGGEETPAPEAPHPPQLAPPEEQGLlfHEETIDLGGDEFGSEENETASEGSSPladklnEHMMESVLISDSPN-NSEG 81
Cdd:PHA03169   92 PSGSGSESVGSPTPSPSGSAEELASGL--SPENTSGSSPESPASHSPPPSPPSHP------GPHEPAPPESHNPSpNQQP 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  82 DAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAP--EDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAA 159
Cdd:PHA03169  164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPpdEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243


                  ....
gi 1622856811 160 EPVP 163
Cdd:PHA03169  244 GPPF 247
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
96-331 8.37e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 8.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  96 GGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPA 175
Cdd:PRK12323  367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 176 pRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTffGDAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPP 255
Cdd:PRK12323  447 -APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA--APAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 256 VSVPGTEGRPEPAAMRGPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMdrrNDAWLPGEATRGVLRAVAAQ 331
Cdd:PRK12323  524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM---FDGDWPALAARLPVRGLAQQ 596
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 554-613 7.84e-05

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.65  E-value: 7.84e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622856811 554 YSMANCLLLMKDYVLAVEAYHAVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 613
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 102-269 9.06e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.06  E-value: 9.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 102 GPEpASTPSPTGEVHGDCAPEDApeDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAaePVPVCTIFSQRAP-PAPRD-G 179
Cdd:pfam05109 424 APE-STTTSPTLNTTGFAAPNTT--TGLPSSTHVPTNLTAPASTGPTVSTADVTSPT--PAGTTSGASPVTPsPSPRDnG 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 180 FEPqmvKSPSFGGASEAPARTPPQAVQPSPSLSTFFGDaAASHSLASdffDSFTTSAFVSVSNPGAGSPASASPPPVSVP 259
Cdd:pfam05109 499 TES---KAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN-ATSPTLGK---TSPTSAVTTPTPNATSPTPAVTTPTPNATI 571

                         170
                  ....*....|
gi 1622856811 260 GTEGRPEPAA 269
Cdd:pfam05109 572 PTLGKTSPTS 581
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 10-269 3.09e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 44.37  E-value: 3.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  10 TPAPEAPHPPQLAPPEEQgllfHEetidLGGDEFGSEENETASEGSSPLADKLNEHMMESvlISDSPNNSEGDAGDlgRA 89
Cdd:pfam03154 273 GQMPPMPHSLQTGPSHMQ----HP----VPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQR--IHTPPSQSQLQSQQ--PP 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  90 REEAEPGGegdPGPEPASTPSPTGEVHGDCAPEdAPEDAAPRSGGAPRQDAAREAPGSE----AARPEQEPPAAEPVPVC 165
Cdd:pfam03154 341 REQPLPPA---PLSMPHIKPPPTTPIPQLPNPQ-SHKHPPHLSGPSPFQMNSNLPPPPAlkplSSLSTHHPPSAHPPPLQ 416

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 166 TI-FSQRAPPAPRDgfEPQMVKSPSF-GGASEAPartPPQAVQPSPSLSTFfgdaaASHSlasdffdsFTTSAFVSVSNP 243
Cdd:pfam03154 417 LMpQSQQLPPPPAQ--PPVLTQSQSLpPPAASHP---PTSGLHQVPSQSPF-----PQHP--------FVPGGPPPITPP 478

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1622856811 244 gAGSPASASP------PPVSVPGTEGRPEPAA 269
Cdd:pfam03154 479 -SGPPTSTSSampgiqPPSSASVSSSGPVPAA 509
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 87-262 7.55e-04

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 42.55  E-value: 7.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  87 GRAREEAEPGGEGdPGPEPASTPSPTGEVHGDCAP--EDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPV 164
Cdd:cd23959    59 GAVSPEGENPFDG-PGLVTASTVSDCYVGNANFYEvdMSDAFAMAPDESLGPFRAARVPNPFSASSSTQRETHKTAQVAP 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 165 cTIFSQRAPPAPRDGfepQMvksPSFGGASEAPARTPPQAV-QPSPSLSTFFGDAAASHSLASDFFDSFTTSAFVSVSNP 243
Cdd:cd23959   138 -PKAEPQTAPVTPFG---QL---PMFGQHPPPAKPLPAAAAaQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPD 210

                         170
                  ....*....|....*....
gi 1622856811 244 GAGSPASAsPPPVSVPGTE 262
Cdd:cd23959   211 GFPAEASA-PSPFAAPASA 228
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 627-657 5.22e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 5.22e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1622856811 627 VLMNRAFLHLGQNNFAEAHRFFTEILRMDPT 657
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 551-582 8.58e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 8.58e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1622856811  551 RVMYSMANCLLLMKDYVLAVEAYHAVIKYYPE 582
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 547-692 1.42e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.74  E-value: 1.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 547 SRLGRVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 626
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 627 VLMNRAFLHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 692
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
551-707 2.86e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.48  E-value: 2.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 551 RVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMN 630
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEALNN 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856811 631 RAFLHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 707
Cdd:COG0457    82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA---DALYNLGIALE 155
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
551-723 2.35e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.78  E-value: 2.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 551 RVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvtQKLDGLQGKIMVLMN 630
Cdd:COG0457    43 EALYNLGLAYLRLGRYEEALADYEQALELDPDD-AEALNNLGLALQALGRYEEALEDYD------KALELDPDDAEALYN 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 631 RAFLHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELES 710
Cdd:COG0457   116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195

                         170
                  ....*....|...
gi 1622856811 711 SRSMQKKQALLEA 723
Cdd:COG0457   196 LLALLLALEQALR 208
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 551-731 3.37e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.51  E-value: 3.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 551 RVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKldglqgKIMVLMN 630
Cdd:COG2956    77 EALLELAQDYLKAGLLDRAEELLEKLLELDPDD-AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCE 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 631 RAFLHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYElES 710
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL---PALPRLAELYE-KL 225

                         170       180
                  ....*....|....*....|.
gi 1622856811 711 SRSMQKKQALLEAVAGKEGDS 731
Cdd:COG2956   226 GDPEEALELLRKALELDPSDD 246
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 89-211 2.12e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.61  E-value: 2.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  89 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQdAAREAPGSEAARPEQEPPAAEPVPVCTIF 168
Cdd:PRK07764  376 ARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP-AAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1622856811 169 SQR------APPAPRDGFEPQMVK----SPSFGGASEAPARTPPQAVQPSPSL 211
Cdd:PRK07764  455 SPPpaaapsAQPAPAPAAAPEPTAapapAPPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03169 PHA03169
hypothetical protein; Provisional
 3-163 7.53e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 52.28  E-value: 7.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   3 DAGGGEETPAPEAPHPPQLAPPEEQGLlfHEETIDLGGDEFGSEENETASEGSSPladklnEHMMESVLISDSPN-NSEG 81
Cdd:PHA03169   92 PSGSGSESVGSPTPSPSGSAEELASGL--SPENTSGSSPESPASHSPPPSPPSHP------GPHEPAPPESHNPSpNQQP 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  82 DAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAP--EDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAA 159
Cdd:PHA03169  164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPpdEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243


                  ....
gi 1622856811 160 EPVP 163
Cdd:PHA03169  244 GPPF 247
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-271 8.04e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 8.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  93 AEPGGEGDPGPEPASTPSPtgevhgdcAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPA--AEPVPVCTIFSQ 170
Cdd:PRK07003  430 PAPPATADRGDDAADGDAP--------VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDaaFEPAPRAAAPSA 501

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 171 RAPPAPRDGFEPQMVKSPSfggASEAPARTPPQAVQPSPSLSTffgdAAASHSLASDFFDSFtTSAFVSVSNPGAGSPAS 250
Cdd:PRK07003  502 ATPAAVPDARAPAAASRED---APAAAAPPAPEARPPTPAAAA----PAARAGGAAAALDVL-RNAGMRVSSDRGARAAA 573

                         170       180
                  ....*....|....*....|.
gi 1622856811 251 ASPPPVSVPGTegrPEPAAMR 271
Cdd:PRK07003  574 AAKPAAAPAAA---PKPAAPR 591
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
87-271 8.11e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 8.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  87 GRAREEAEPGGEGDPGPEPASTP-----SPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGseAARPEQEPPAAEP 161
Cdd:PRK07003  369 GGGVPARVAGAVPAPGARAAAAVgasavPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP--ATADRGDDAADGD 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 162 VPVCTIFSQRAPPAPRD---GFEPQMVKSPSFGGASEAPartPPQAVQPSPSlstffGDAAAShslasdffdsfTTSAFV 238
Cdd:PRK07003  447 APVPAKANARASADSRCderDAQPPADSGSASAPASDAP---PDAAFEPAPR-----AAAPSA-----------ATPAAV 507

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1622856811 239 SVSNPGAGSPASASPPPVSVPGTEGR-PEPAAMR 271
Cdd:PRK07003  508 PDARAPAAASREDAPAAAAPPAPEARpPTPAAAA 541
PHA03247 PHA03247
large tegument protein UL36; Provisional
 101-269 8.26e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 8.26e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  101 PGPEPASTPSPTGEVHGDCAPEDAPEDAAP-------------RSGGA------PRQDAAREAPGSEA--ARPEQEPPAA 159
Cdd:PHA03247  2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprrarrlgRAAQAssppqrPRRRAARPTVGSLTslADPPPPPPTP 2708

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  160 EPVPVCTIFS-----------QRAPPAPRDGFEPQMVKSPSFGGASEAPAR----------TPPQA-VQPSPSLSTFFGD 217
Cdd:PHA03247  2709 EPAPHALVSAtplppgpaaarQASPALPAAPAPPAVPAGPATPGGPARPARppttagppapAPPAApAAGPPRRLTRPAV 2788

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1622856811  218 AAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAA 269
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
PHA03247 PHA03247
large tegument protein UL36; Provisional
 10-265 9.79e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 9.79e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   10 TPAPEAPHPPQLAPPEEQGLLFHEEtidlGGDEFGSEENETASEGSSPLADKLNEHmmesvliSDSPNNSEGDAGDLGRA 89
Cdd:PHA03247  2615 SPLPPDTHAPDPPPPSPSPAANEPD----PHPPPTVPPPERPRDDPAPGRVSRPRR-------ARRLGRAAQASSPPQRP 2683

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   90 REEAEPGGEG---------DPGPEPAS--------TPSPTGEVHGDCAPEDAPEDAAPRSGGA----PRQDAAREAPGSE 148
Cdd:PHA03247  2684 RRRAARPTVGsltsladppPPPPTPEPaphalvsaTPLPPGPAAARQASPALPAAPAPPAVPAgpatPGGPARPARPPTT 2763

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  149 AARPEQEPPAAEPVPVctifSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTP------PQAVQPSPSLSTFFGDAAASH 222
Cdd:PHA03247  2764 AGPPAPAPPAAPAAGP----PRRLTRPAVASLSESRESLPSPWDPADPPAAVLapaaalPPAASPAGPLPPPTSAQPTAP 2839

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....
gi 1622856811  223 SLASDFF-DSFTTSAFVSVSNPGAGSPASASPPPvsVPGTEGRP 265
Cdd:PHA03247  2840 PPPPGPPpPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARP 2881
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 73-210 2.04e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 2.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  73 SDSPNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARP 152
Cdd:PRK07764  640 SAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAA 719

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622856811 153 EQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPS 210
Cdd:PRK07764  720 QPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 89-269 2.07e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 2.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  89 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPrqdAAREAPGSEAARPEQEPPAAEPVPVctif 168
Cdd:PRK07764  613 ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP---DASDGGDGWPAKAGGAAPAAPPPAP---- 685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 169 SQRAPPAPRDGFEPQmvkspsfgGASEAPARTPPQAVQPSPSLSTFFGDAAASHSLASDffdsFTTSAFVSVSNPGAGSP 248
Cdd:PRK07764  686 APAAPAAPAGAAPAQ--------PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAD----DPVPLPPEPDDPPDPAG 753

                         170       180
                  ....*....|....*....|.
gi 1622856811 249 ASASPPPVSVPGTEGRPEPAA 269
Cdd:PRK07764  754 APAQPPPPPAPAPAAAPAAAP 774
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 554-696 6.26e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 6.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 554 YSMANCLLLMKDYVLAVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKldglqgKIMVLMNRAF 633
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQ 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622856811 634 LHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPR--HYLHE 696
Cdd:COG2956    85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnaHAYCE 149
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 517-725 6.69e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 6.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 517 LANLEQGLAEDGAMSSVTQEGRQASVRLWRSRLGRVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEqEPQLLSGIGRISL 596
Cdd:COG3914    45 LLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD-NAEALFNLGNLLL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 597 QIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMNRAFLHLGQNNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLK 676
Cdd:COG3914   124 ALGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1622856811 677 DSLRQLEAMVQQDPRH-YLHESVLFnltTMYELESSRSMQKKQALLEAVA 725
Cdd:COG3914   198 EAIAAYRRALELDPDNaDAHSNLLF---ALRQACDWEVYDRFEELLAALA 244
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
96-331 8.37e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 8.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  96 GGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPA 175
Cdd:PRK12323  367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 176 pRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTffGDAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPP 255
Cdd:PRK12323  447 -APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA--APAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 256 VSVPGTEGRPEPAAMRGPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMdrrNDAWLPGEATRGVLRAVAAQ 331
Cdd:PRK12323  524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM---FDGDWPALAARLPVRGLAQQ 596
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-207 8.56e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 8.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   4 AGGGEETPAP-------EAPHPPQLAPPEEQGllfheetidlggdefGSEENETASEGSSPLADKLNEHMMESVLISDSP 76
Cdd:PRK07764  594 AAGGEGPPAPassgppeEAARPAAPAAPAAPA---------------APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVA 658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  77 NNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGA------PRQDAAREAPGSEAA 150
Cdd:PRK07764  659 VPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPaaqppqAAQGASAPSPAADDP 738

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856811 151 RPEQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQP 207
Cdd:PRK07764  739 VPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 75-322 9.47e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.30  E-value: 9.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  75 SPNNSEGDAGDLGRAREEAEPGGEGDPG----------PEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREA 144
Cdd:PTZ00449  523 APGDKEGEEGEHEDSKESDEPKEGGKPGetkegevgkkPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRS 602

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 145 PGSEAARPEQEPPAAEPVP-----VCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPaRTPPQAVQPS--PSLSTFFGD 217
Cdd:PTZ00449  603 AQRPTRPKSPKLPELLDIPkspkrPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPP-KSPKPPFDPKfkEKFYDDYLD 681

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 218 AAA--SHSLASDFFDSFTTSAFVSVSNPGAGSPASASPP-PVSVPGTEGRP-----EPAAMRGPQAAAPPASPEPFAHIQ 289
Cdd:PTZ00449  682 AAAksKETKTTVVLDESFESILKETLPETPGTPFTTPRPlPPKLPRDEEFPfepigDPDAEQPDDIEFFTPPEEERTFFH 761

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1622856811 290 AVFAGSDDPFATALSMSEMDRRNDAWLPGEATR 322
Cdd:PTZ00449  762 ETPADTPLPDILAEEFKEEDIHAETGEPDEAMK 794
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
88-269 1.12e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  88 RAREEAEPGGEGDPGPEPASTPSPTGEVHGDcAPEDAPEDAAPRSGGAPRQDAAREAPGseAARPEQEPPAAePVPVCTI 167
Cdd:PRK12323  389 AAAPAAAAPAPAAPPAAPAAAPAAAAAARAV-AAAPARRSPAPEALAAARQASARGPGG--APAPAPAPAAA-PAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 168 FSQRAPPAPRDGFEPQMVKSPSfGGASEAPARTPPQAVQPS--PSLSTFFGDAAASHSLASDFFDSFTTSAfvsvsnPGA 245
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPA-AAPAPADDDPPPWEELPPefASPAPAQPDAAPAGWVAESIPDPATADP------DDA 537

                         170       180
                  ....*....|....*....|....
gi 1622856811 246 GSPASASPPPVSVPGTEGRPEPAA 269
Cdd:PRK12323  538 FETLAPAPAAAPAPRAAAATEPVV 561
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 550-656 1.36e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 550 GRVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVekvtQKLDGLQgkIMVLM 629
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD-NADALLDLAEALLAAGDTEEAEELLERA----LALDPDN--PEALY 89

                          90       100
                  ....*....|....*....|....*..
gi 1622856811 630 NRAFLHLGQNNFAEAHRFFTEILRMDP 656
Cdd:COG4235    90 LLGLAAFQQGDYAEAIAAWQKLLALLP 116
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 558-656 1.50e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 558 NCLLLMKDYVLAVEAYHAVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIMVLMNRAFLHLG 637
Cdd:COG5010    62 NLYNKLGDFEESLALLEQALQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKA------LALSPDNPNAYSNLAALLLS 134

                          90
                  ....*....|....*....
gi 1622856811 638 QNNFAEAHRFFTEILRMDP 656
Cdd:COG5010   135 LGQDDEAKAALQRALGTSP 153
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
86-210 2.13e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.95  E-value: 2.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  86 LGRAREEAEPGGEGDPGPEPASTPSPtgevhgdcAPEDAPEDAAPRSGGAPRQDA-AREAPGSEAARPEQEPPAAEPVPV 164
Cdd:PRK12323  433 LAAARQASARGPGGAPAPAPAPAAAP--------AAAARPAAAGPRPVAAAAAAApARAAPAAAPAPADDDPPPWEELPP 504

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1622856811 165 CtiFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPS 210
Cdd:PRK12323  505 E--FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 75-243 2.31e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 47.75  E-value: 2.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  75 SPNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPE---------DAAPRSGGAPRQDAAREAP 145
Cdd:PRK14959  380 APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSprvpwddapPAPPRSGIPPRPAPRMPEA 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 146 GSEAARPEQEPPAAEPVPVCTIFSQRAPPAPR-----DGFEPQMVKSPSFGGASEAPAR-TPPQAVQPSPSLSTF----- 214
Cdd:PRK14959  460 SPVPGAPDSVASASDAPPTLGDPSDTAEHTPSgprtwDGFLEFCQGRNGQGGRLATVLRqATPEHADGRLRLATMssvqy 539

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1622856811 215 --FGDAAASHSLASDFFDSFTTSAFVSVSNP 243
Cdd:PRK14959  540 erLTDAATETTLAGLVRDYFGDACRVEVLPP 570
PHA03247 PHA03247
large tegument protein UL36; Provisional
 76-269 3.16e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 3.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   76 PNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPsPTGEVHGDCAPEDAPEDAAPRSGGAPRQ--DAAREAPGSEAARPE 153
Cdd:PHA03247  2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP-AAGPPRRLTRPAVASLSESRESLPSPWDpaDPPAAVLAPAAALPP 2820

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  154 QEPPAAePVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPslstffgdAAASHSLASdffdSFT 233
Cdd:PHA03247  2821 AASPAG-PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP--------AAPARPPVR----RLA 2887

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1622856811  234 TSAFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAA 269
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQP 2923
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 547-613 4.01e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 4.01e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622856811 547 SRLGRVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 613
Cdd:COG1729    27 PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkaPDALLKLGLSYLELGDYDKARATLEELIK 95
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 12-272 6.15e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 6.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   12 APEAPHPPQLAPPEEQGLLFHEETIDLGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDSPNNSEGDAGDL----- 86
Cdd:PHA03307    18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLstlap 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   87 GRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCT 166
Cdd:PHA03307    98 ASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  167 IfSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAvQPSPSLSTFFGDAAASHSLASDffDSFTTSAFVSVSNPGAG 246
Cdd:PHA03307   178 S-PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPIS-ASASSPAPAPGRSAADDAGASS--SDSSSSESSGCGWGPEN 253

                          250       260
                   ....*....|....*....|....*.
gi 1622856811  247 SPASASPPPVSVPGTEGRPEPAAMRG 272
Cdd:PHA03307   254 ECPLPRPAPITLPTRIWEASGWNGPS 279
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 554-613 7.84e-05

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.65  E-value: 7.84e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622856811 554 YSMANCLLLMKDYVLAVEAYHAVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 613
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
PHA03378 PHA03378
EBNA-3B; Provisional
 69-269 8.39e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 46.21  E-value: 8.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  69 SVLISDSPNNSEGDAGDLGRARE-EAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGs 147
Cdd:PHA03378  684 MLPIQWAPGTMQPPPRAPTPMRPpAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG- 762

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 148 EAARPEQEPPAAEPVPvctifSQRAPPAPRdgfepqmvKSPSFGGASEAPARTPPQAVQPSPSLSTffGDAAASHSLASD 227
Cdd:PHA03378  763 RARPPAAAPGAPTPQP-----PPQAPPAPQ--------QRPRGAPTPQPPPQAGPTSMQLMPRAAP--GQQGPTKQILRQ 827

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 228 FFDSFTTSAFVSVSNPGAG----------SPASAS-----------PP---PVSVPGTEGRPEPAA 269
Cdd:PHA03378  828 LLTGGVKRGRPSLKKPAALerqaaagptpSPGSGTsdkivqapvfyPPvlqPIQVMRQLGSVRAAA 893
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 102-269 9.06e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.06  E-value: 9.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 102 GPEpASTPSPTGEVHGDCAPEDApeDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAaePVPVCTIFSQRAP-PAPRD-G 179
Cdd:pfam05109 424 APE-STTTSPTLNTTGFAAPNTT--TGLPSSTHVPTNLTAPASTGPTVSTADVTSPT--PAGTTSGASPVTPsPSPRDnG 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 180 FEPqmvKSPSFGGASEAPARTPPQAVQPSPSLSTFFGDaAASHSLASdffDSFTTSAFVSVSNPGAGSPASASPPPVSVP 259
Cdd:pfam05109 499 TES---KAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN-ATSPTLGK---TSPTSAVTTPTPNATSPTPAVTTPTPNATI 571

                         170
                  ....*....|
gi 1622856811 260 GTEGRPEPAA 269
Cdd:pfam05109 572 PTLGKTSPTS 581
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 125-262 9.84e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.86  E-value: 9.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 125 PEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPsfggASEAPARTPPQA 204
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP----AAAAPAAAPAAA 441

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622856811 205 VQPSPSlstffgdAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPPVSVPGTE 262
Cdd:PRK14951  442 PAAVAL-------APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 91-221 1.03e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 45.83  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  91 EEAEPGGEGDPGPEPASTPSPTGEVHGDCAP--EDAPEDAAPRSGGAPrqdaAREAPGSEAarpeqepPAAEPVPvcTIF 168
Cdd:PRK14959  369 ESLRPSGGGASAPSGSAAEGPASGGAATIPTpgTQGPQGTAPAAGMTP----SSAAPATPA-------PSAAPSP--RVP 435

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1622856811 169 SQRAPPAP-RDGFEPQmvKSPSFGGASEAPARtpPQAVQPSPSLSTFFGDAAAS 221
Cdd:PRK14959  436 WDDAPPAPpRSGIPPR--PAPRMPEASPVPGA--PDSVASASDAPPTLGDPSDT 485
PHA03247 PHA03247
large tegument protein UL36; Provisional
 82-272 1.12e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   82 DAGDLGRAREEAEPGGEGD---PGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGS----EAARPEQ 154
Cdd:PHA03247  2547 DAGDPPPPLPPAAPPAAPDrsvPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSplppDTHAPDP 2626

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  155 EPPA----------AEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTP-PQAVQPSPSLSTFFGD------ 217
Cdd:PHA03247  2627 PPPSpspaanepdpHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPrRRAARPTVGSLTSLADpppppp 2706

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622856811  218 --AAASHSLASDFFDSFTTSAFVSVSNPgagSPASASPPPV----SVPGTEGRP-EPAAMRG 272
Cdd:PHA03247  2707 tpEPAPHALVSATPLPPGPAAARQASPA---LPAAPAPPAVpagpATPGGPARPaRPPTTAG 2765
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
596-693 1.17e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 596 LQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNRAFLHLGQNNFAEAHRFfTEILRMDPTNAVANNNAAVCLLYLGKL 675
Cdd:COG3063     3 LKLGDLEEAEEYYEKA----LELDP--DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDY 75

                          90
                  ....*....|....*...
gi 1622856811 676 KDSLRQLEAMVQQDPRHY 693
Cdd:COG3063    76 DEALAYLERALELDPSAL 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
559-656 1.29e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 559 CLLLMKDYVLAVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvTQKLDglQGKIMVLMNRAFLHLGQ 638
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDN-ADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAELLLEL 72

                          90
                  ....*....|....*...
gi 1622856811 639 NNFAEAHRFFTEILRMDP 656
Cdd:COG3063    73 GDYDEALAYLERALELDP 90
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
113-347 1.78e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 113 GEVHGDCAPedAPEDAAPRSGGAP---RQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPAPrDGFEPQMVKSPS 189
Cdd:PRK12323  366 GQSGGGAGP--ATAAAAPVAQPAPaaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP-EALAAARQASAR 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 190 FGGASEAPARTPPQAvqPSPSLSTffgdAAAShslasdffdsfttsaFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAA 269
Cdd:PRK12323  443 GPGGAPAPAPAPAAA--PAAAARP----AAAG---------------PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEE 501

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622856811 270 MRGPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMDRRNDAWLPGEATRGVLRAVAAQQRGAVFVDKENLTMPG 347
Cdd:PRK12323  502 LPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 560-656 1.89e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 1.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 560 LLLMKDYVLAVEAYHAVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEKV---TQKLDglqgkiMVLMNRAFL 634
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSPlaPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAP------DALLKLGLS 76

                          90       100
                  ....*....|....*....|..
gi 1622856811 635 HLGQNNFAEAHRFFTEILRMDP 656
Cdd:COG1729    77 YLELGDYDKARATLEELIKKYP 98
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 82-387 2.03e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 44.70  E-value: 2.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  82 DAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAA---------PRSGGAPRQDAAREAPGSEAARP 152
Cdd:PRK08691  367 DANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAmpsegktagPVSNQENNDVPPWEDAPDEAQTA 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 153 EqePPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTffgdAAASHSLASDFFDSF 232
Cdd:PRK08691  447 A--GTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVET----ETFAHEAPAEPFYGY 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 233 TTSAFVSVSNPGAGSP----ASASPPPVSVPGTEGRPEPAAMRGPQAAAPPASPEPFAHIQAVFAGsddpFATALSMSEM 308
Cdd:PRK08691  521 GFPDNDCPPEDGAEIPppdwEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTENWAAIVRH----FARKLGAAQM 596

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 309 DRRNDAWLPGEATRGVLR-AVAAQQR---GAVFVDKENLTMP---GLRFDNIQGDAVKDLML--------RFLGEKAAAK 373
Cdd:PRK08691  597 PAQHSAWTEYHPDTGLMVlAMTAEARataDKKRLDKIRDTLAqayGLQLTLQTQDWRDEAGRetpamqdkRVQAEDRQKA 676

                         330
                  ....*....|....
gi 1622856811 374 RQVLNADSVEQSFV 387
Cdd:PRK08691  677 QALLEADPAAQKIL 690
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 569-690 2.27e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 2.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 569 AVEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNRAFLHLGQNNFAEAHRFF 648
Cdd:COG4235     2 AIARLRQALAANPND-AEGWLLLGRAYLRLGRYDEALAAYEKA----LRLDP--DNADALLDLAEALLAAGDTEEAEELL 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1622856811 649 TEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDP 690
Cdd:COG4235    75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
PHA03169 PHA03169
hypothetical protein; Provisional
 2-126 2.53e-04

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 44.19  E-value: 2.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   2 EDAGGGEETPAPEAPHPPqlAPPEEqgllfHEETIDLGGDEFGSEENETASEGSSPlADKLNEHMMESVLISDSPNNSEG 81
Cdd:PHA03169  132 ASHSPPPSPPSHPGPHEP--APPES-----HNPSPNQQPSSFLQPSHEDSPEEPEP-PTSEPEPDSPGPPQSETPTSSPP 203

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1622856811  82 DAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPE 126
Cdd:PHA03169  204 PQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 104-255 2.57e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 44.33  E-value: 2.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 104 EPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAArEAPGSEAARPEQepPAAEPVPVCtifSQRAPPAPRDgfEPQ 183
Cdd:PHA03269   20 ANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPA-VAPTSAASRKPD--LAQAPTPAA---SEKFDPAPAP--HQA 91

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622856811 184 MVKSPSfggaseaPARTPPQAVQPSPSLSTFFGDAAASHSLASDffdsFTTSAFVSVSNPGAGSpaSASPPP 255
Cdd:PHA03269   92 ASRAPD-------PAVAPQLAAAPKPDAAEAFTSAAQAHEAPAD----AGTSAASKKPDPAAHT--QHSPPP 150
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 10-269 3.09e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 44.37  E-value: 3.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  10 TPAPEAPHPPQLAPPEEQgllfHEetidLGGDEFGSEENETASEGSSPLADKLNEHMMESvlISDSPNNSEGDAGDlgRA 89
Cdd:pfam03154 273 GQMPPMPHSLQTGPSHMQ----HP----VPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQR--IHTPPSQSQLQSQQ--PP 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  90 REEAEPGGegdPGPEPASTPSPTGEVHGDCAPEdAPEDAAPRSGGAPRQDAAREAPGSE----AARPEQEPPAAEPVPVC 165
Cdd:pfam03154 341 REQPLPPA---PLSMPHIKPPPTTPIPQLPNPQ-SHKHPPHLSGPSPFQMNSNLPPPPAlkplSSLSTHHPPSAHPPPLQ 416

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 166 TI-FSQRAPPAPRDgfEPQMVKSPSF-GGASEAPartPPQAVQPSPSLSTFfgdaaASHSlasdffdsFTTSAFVSVSNP 243
Cdd:pfam03154 417 LMpQSQQLPPPPAQ--PPVLTQSQSLpPPAASHP---PTSGLHQVPSQSPF-----PQHP--------FVPGGPPPITPP 478

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1622856811 244 gAGSPASASP------PPVSVPGTEGRPEPAA 269
Cdd:pfam03154 479 -SGPPTSTSSampgiqPPSSASVSSSGPVPAA 509
PHA03418 PHA03418
hypothetical E4 protein; Provisional
 90-209 3.87e-04

hypothetical E4 protein; Provisional


Pssm-ID: 177646 [Multi-domain]  Cd Length: 230  Bit Score: 42.80  E-value: 3.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  90 REEAEPGGEGDPgpEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARP-----EQEPPAAEPVPV 164
Cdd:PHA03418   63 RPPAQPNGHNKP--PVTKQPGGEGTEEDHQAPLAADADDDPRPGKRSKADEHGPAPGRAALAPfkldlDQDPLHGDPDPP 140

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1622856811 165 CTIFSQRAPPAPRDGFEPQmvksPSFG---GASEAPARTPPQAVQPSP 209
Cdd:PHA03418  141 PGATGGQGEEPPEGGEESQ----PPLGegeGAVEGHPPPLPPAPEPKP 184
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 95-218 4.60e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 4.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  95 PGGEGDPGPEPASTPSPTGEVHGDCAPE------DAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIF 168
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVaqaaaaPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1622856811 169 SQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTFFGDA 218
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 551-655 4.82e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 4.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 551 RVMYSMANCLLLMKDYVLAVEAYHAVIKYYPEQEPqLLSGIGRISLQIGDIKTAEKYFQDVEKvtqkldgLQGKIMVLMN 630
Cdd:COG2956   179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLP-ALPRLAELYEKLGDPEEALELLRKALE-------LDPSDDLLLA 250

                          90       100
                  ....*....|....*....|....*
gi 1622856811 631 RAFLHLGQNNFAEAHRFFTEILRMD 655
Cdd:COG2956   251 LADLLERKEGLEAALALLERQLRRH 275
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 87-181 5.34e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 5.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  87 GRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPvct 166
Cdd:PRK07764  421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP--- 497

                          90
                  ....*....|....*
gi 1622856811 167 ifSQRAPPAPRDGFE 181
Cdd:PRK07764  498 --AAPAAPAGADDAA 510
PHA03247 PHA03247
large tegument protein UL36; Provisional
 89-257 5.76e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 5.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   89 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVctif 168
Cdd:PHA03247  2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREA---- 2988

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  169 SQRAPPAPRDGFEPQMVKSPSFGGASEAPARTP---------PQAVQPSPSLSTFFGDAAASHSLASDFFDSFTTSAFVS 239
Cdd:PHA03247  2989 PASSTPPLTGHSLSRVSSWASSLALHEETDPPPvslkqtlwpPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAH 3068

                          170       180
                   ....*....|....*....|....*
gi 1622856811  240 VSNPG---AGSPASAS----PPPVS 257
Cdd:PHA03247  3069 EPDPAtpeAGARESPSsqfgPPPLS 3093
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 87-262 7.55e-04

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 42.55  E-value: 7.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  87 GRAREEAEPGGEGdPGPEPASTPSPTGEVHGDCAP--EDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPV 164
Cdd:cd23959    59 GAVSPEGENPFDG-PGLVTASTVSDCYVGNANFYEvdMSDAFAMAPDESLGPFRAARVPNPFSASSSTQRETHKTAQVAP 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 165 cTIFSQRAPPAPRDGfepQMvksPSFGGASEAPARTPPQAV-QPSPSLSTFFGDAAASHSLASDFFDSFTTSAFVSVSNP 243
Cdd:cd23959   138 -PKAEPQTAPVTPFG---QL---PMFGQHPPPAKPLPAAAAaQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPD 210

                         170
                  ....*....|....*....
gi 1622856811 244 GAGSPASAsPPPVSVPGTE 262
Cdd:cd23959   211 GFPAEASA-PSPFAAPASA 228
PHA03379 PHA03379
EBNA-3A; Provisional
 10-209 9.06e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 42.74  E-value: 9.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  10 TPAPEAPHPPQLAPPEEqgllfheETIDLGGDEFGSEENETASEGSSPLADklnEHMMESVLISDSPNNSEGD--AGDLg 87
Cdd:PHA03379  415 TPRPPVEKPRPEVPQSL-------ETATSHGSAQVPEPPPVHDLEPGPLHD---QHSMAPCPVAQLPPGPLQDlePGDQ- 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  88 rareeaEPGGEGDPGPEPASTPSPTGevhgdcaPEDAPEDAAPRSggAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTI 167
Cdd:PHA03379  484 ------LPGVVQDGRPACAPVPAPAG-------PIVRPWEASLSQ--VPGVAFAPVMPQPMPVEPVPVPTVALERPVCPA 548

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1622856811 168 FSQRAPPAPRdgfEPQMVKSPSFGGASEAPARTPPQAVQPSP 209
Cdd:PHA03379  549 PPLIAMQGPG---ETSGIVRVRERWRPAPWTPNPPRSPSQMS 587
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 8-346 9.17e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 9.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811    8 EETPAPEAPHPPQLAPPEEQGLLFHEETIDLGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDSPNNSEGDAGDLG 87
Cdd:PHA03307    79 APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAS 158

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   88 RAREEAEPGGEGDP------GPEPASTP-SPTGEVHGDCAPEDAPEDAAPRsgGAPRQDAAREAPGSEAARPEQEPPAAE 160
Cdd:PHA03307   159 PAAVASDAASSRQAalplssPEETARAPsSPPAEPPPSTPPAAASPRPPRR--SSPISASASSPAPAPGRSAADDAGASS 236

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  161 ------PVPVCTIFSQRAPPAPRDGfePQMVKSPSFGGASEAPARTPPQAVQPSPSLSTFFGDAAASHSLASDFFDSFTT 234
Cdd:PHA03307   237 sdssssESSGCGWGPENECPLPRPA--PITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  235 SAFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAAMRGPQAAAPPAS---------PEPFAHIQAVFAGSDDPFATALSM 305
Cdd:PHA03307   315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADpssprkrprPSRAPSSPAASAGRPTRRRARAAV 394

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1622856811  306 SEMDRRNDAWLPGEATRGVLRAVAAQQRGAVFVDKENLTMP 346
Cdd:PHA03307   395 AGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTP 435
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 85-179 1.07e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 42.24  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  85 DLGRAREEAEPGGEGDPgPEPASTPSPtgevhgdcAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPV 164
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSP-DVKKKAPEP--------DLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPL 442

                          90
                  ....*....|....*
gi 1622856811 165 CTIFSQRAPPAPRDG 179
Cdd:PRK14954  443 PPSPQASAPRNVASG 457
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 560-740 1.15e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 560 LLLMKDYVLAVEAYHAVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDV-EKVTQKLDGLQGKIMVlmnraflHLGQ 638
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPN-NIAVLLALATILIEAGEFEEAEKHADALlKKAPNSPLAHYLKALV-------DFQK 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 639 NNFAEAHRFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRhyLHESVLfnLTTMYELESSRSMQkKQ 718
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN--SHQARR--LLASIQLRLGRVDE-AI 349

                         170       180
                  ....*....|....*....|..
gi 1622856811 719 ALLEAVAGKegDSFNTQCLKLA 740
Cdd:TIGR02917 350 ATLSPALGL--DPDDPAALSLL 369
PHA03169 PHA03169
hypothetical protein; Provisional
 80-209 1.17e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 41.88  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  80 EGDAGDLGRAREEAE--PGGEGDPGPEPASTPSP-TGEVHGDCAPEDAPEDAAPRSGGAPRQDA-------AREAPGSEA 149
Cdd:PHA03169   87 RGQGGPSGSGSESVGspTPSPSGSAEELASGLSPeNTSGSSPESPASHSPPPSPPSHPGPHEPAppeshnpSPNQQPSSF 166

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 150 ARPEQEPPAAEPVPVCTIFSQRAPPAPrDGFEPQMVKSPSFGGASEAPARTPPQAVQPSP 209
Cdd:PHA03169  167 LQPSHEDSPEEPEPPTSEPEPDSPGPP-QSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP 225
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 121-250 1.21e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.04  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 121 PEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPvctifSQRAPPAPRDGFE----------PQMV----- 185
Cdd:PRK14965  385 PSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAP-----PAAAAPPARSADPaaaasagdrwRAFVafvkg 459

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622856811 186 KSPSFGGASE--APARTPPQAVQPS-PSLSTFF-----GDAAAS-HSLASDFFDSFTTSAFVSVSNPGAGSPAS 250
Cdd:PRK14965  460 KKPALGASLEqgSPLGVSAGLLEIGfPEGSFELsamqdPDSRAElKALAEQFFGRPTRLRITVLAAPPGAAPPS 533
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 114-270 1.89e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 114 EVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPvctifsQRAPPAPRDGFEPQMVKSPSFGga 193
Cdd:PRK07764  577 ELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAA------PAPAGAAAAPAEASAAPAPGVA-- 648

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856811 194 seAPARTPPQAVQPSPSLSTFFGDAAAshslasdffDSFTTSAFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAAM 270
Cdd:PRK07764  649 --APEHHPKHVAVPDASDGGDGWPAKA---------GGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 121-267 1.93e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 121 PEDAPEDAAPrsggaprqdAAREAPgseaARPEQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPART 200
Cdd:PRK14951  366 PAAAAEAAAP---------AEKKTP----ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA 432

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856811 201 PPQAVQPSPSlstffgdAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPPVSVPGTEGRPEP 267
Cdd:PRK14951  433 APAAAPAAAP-------AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
577-707 2.02e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 577 IKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMNRAFLHLGQNNFAEAHRFFTEILRMDP 656
Cdd:COG0457     1 LELDPDD-AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD------AEALYNLGLAYLRLGRYEEALADYEQALELDP 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1622856811 657 TNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 707
Cdd:COG0457    74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA---EALYNLGLALL 121
PHA03247 PHA03247
large tegument protein UL36; Provisional
 89-268 3.11e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   89 AREEAEPGGEGDPGPEPASTPS----------PTGE---------VHG-----------------DCAPEDAPEDAAPRS 132
Cdd:PHA03247  2492 AGAAPDPGGGGPPDPDAPPAPSrlapailpdePVGEpvhprmltwIRGleelasddagdpppplpPAAPPAAPDRSVPPP 2571

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  133 GGAPRqdAAREAPGSEAARPEQEPPAAEPvpvctifsqRAPPAPRDGFEPQMVKSPsfggASEAPARTPPQAVQPSPSLS 212
Cdd:PHA03247  2572 RPAPR--PSEPAVTSRARRPDAPPQSARP---------RAPVDDRGDPRGPAPPSP----LPPDTHAPDPPPPSPSPAAN 2636

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622856811  213 TFFGDAAASHSLASDFFD-------SFTTSAFVSVSNPGAGSP----------------ASASPPPVSVPGTEGRPEPA 268
Cdd:PHA03247  2637 EPDPHPPPTVPPPERPRDdpapgrvSRPRRARRLGRAAQASSPpqrprrraarptvgslTSLADPPPPPPTPEPAPHAL 2715
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 79-179 3.61e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 3.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  79 SEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHgdcAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPA 158
Cdd:PRK07764  409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG---NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485

                          90       100
                  ....*....|....*....|.
gi 1622856811 159 AEPVPVCTIFSQRAPPAPRDG 179
Cdd:PRK07764  486 AAPAPAAAPAAPAAPAAPAGA 506
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
5-212 4.28e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 4.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   5 GGGEETPAPEAPHPPQLAPPEEQGllfheetidlggdEFGSEENETASEGSSPLADKLNEhMMESVLISDSPNNSEGDAG 84
Cdd:PRK12323  368 SGGGAGPATAAAAPVAQPAPAAAA-------------PAAAAPAPAAPPAAPAAAPAAAA-AARAVAAAPARRSPAPEAL 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  85 DLGRAREEAEPGGEGDPG------PEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAA---REAPGSEAARPEQE 155
Cdd:PRK12323  434 AAARQASARGPGGAPAPApapaaaPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppwEELPPEFASPAPAQ 513

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856811 156 PPAAEPVPVCTIFSQRAPPAPRDGFEPQMVkSPSFGGASEAPARTPPQAVQPSPSLS 212
Cdd:PRK12323  514 PDAAPAGWVAESIPDPATADPDDAFETLAP-APAAAPAPRAAAATEPVVAPRPPRAS 569
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 55-188 5.06e-03

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 39.87  E-value: 5.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  55 SSPLADKLNEHMMESVLISDSPNNSEGDAGDLGRAREEAEPGGE-GDPGPEPASTPSP---TGEVHGDCAPED------A 124
Cdd:PHA03325  257 LTSSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEhSDPEPLPASLPPPpvrRPRVKHPEAGKEepdgarN 336

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856811 125 PEDAAPRSGGAPRQ----------DAAREAPGSEAARPEQEP--PAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSP 188
Cdd:PHA03325  337 AEAKEPAQPATSTSskgsssaqnkDSGSTGPGSSLAAASSFLedDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIP 412
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 627-657 5.22e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 5.22e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1622856811 627 VLMNRAFLHLGQNNFAEAHRFFTEILRMDPT 657
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 105-204 6.11e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 39.55  E-value: 6.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 105 PASTPSPTGEVHGDCAPeDAPEdAAPRSG-------GAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPAPR 177
Cdd:PHA03291  172 LAAPPLGEGSADGSCDP-ALPL-SAPRLGpadvfvpATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGT 249

                          90       100
                  ....*....|....*....|....*..
gi 1622856811 178 DGFEPQMVKSPSFGGASEAPARTPPQA 204
Cdd:PHA03291  250 TPEAEGTPAPPTPGGGEAPPANATPAP 276
PHA03378 PHA03378
EBNA-3B; Provisional
 11-267 6.19e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.05  E-value: 6.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  11 PAPEAPHPPqLAPPEEQGLLFHEEtidlggdefgSEENETASEGSSPLADKLNEHMMESV---LISDSPNNSEGD----- 82
Cdd:PHA03378  472 QAPLEPWQP-LPHPQVTPVILHQP----------PAQGVQAHGSMLDLLEKDDEDMEQRVmatLLPPSPPQPRAGrrapc 540

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  83 --AGDLGRarEEAEPGGEGD--------PGPEP---------------ASTPSPTGE----VHGDCAPED------APED 127
Cdd:PHA03378  541 vyTEDLDI--ESDEPASTEPvhdqllpaPGLGPlqiqpltspttsqlaSSAPSYAQTpwpvPHPSQTPEPpttqshIPET 618

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 128 AAPRSGGAP------RQDAAREAPGSEAARPE-QEPPAAEPVPVCTIFSQ--RAPPAPRDGFEPQMVKSPSFGGASEAPA 198
Cdd:PHA03378  619 SAPRQWPMPlrpipmRPLRMQPITFNVLVFPTpHQPPQVEITPYKPTWTQigHIPYQPSPTGANTMLPIQWAPGTMQPPP 698

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 199 RTP----PQAVQPSPSLSTFFGDAAASHSLASdffdsfTTSAFVSVSNPGAGSPASASP----PPVSVPG-------TEG 263
Cdd:PHA03378  699 RAPtpmrPPAAPPGRAQRPAAATGRARPPAAA------PGRARPPAAAPGRARPPAAAPgrarPPAAAPGrarppaaAPG 772


                  ....
gi 1622856811 264 RPEP 267
Cdd:PHA03378  773 APTP 776
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
550-618 6.22e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 6.22e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622856811 550 GRVMYSMANCLLLMKDYVLAvEAYHAVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKL 618
Cdd:COG3063    26 ADALNNLGLLLLEQGRYDEA-IALEKALKLDPNN-AEALLNLAELLLELGDYDEALAYLERALELDPSA 92
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 551-582 8.58e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 8.58e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1622856811  551 RVMYSMANCLLLMKDYVLAVEAYHAVIKYYPE 582
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 73-184 8.61e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 8.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  73 SDSPNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTP--SPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAA 150
Cdd:PRK07764  409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAgnAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1622856811 151 RPEQEPPAAEPVPvctifsqrAPPAPRDGFEPQM 184
Cdd:PRK07764  489 APAAAPAAPAAPA--------APAGADDAATLRE 514
TPR_12 pfam13424
Tetratricopeptide repeat;
587-654 8.64e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 8.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 587 LLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLDGLQ--GKIMVLMNRAFLHLGQNNFAEAHRFFTEILRM 654
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 82-267 8.93e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.77  E-value: 8.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811   82 DAGDLGRAREEAEPGGEGDPGPEPASTPSptGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEP 161
Cdd:PHA03307    12 EAAAEGGEFFPRPPATPGDAADDLLSGSQ--GQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPT 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  162 VPVCTIFSQRAPPAPRDGfePQMVKSPSFGGASEAPARTPPQAVQP-SPSLSTFFGDAAASHSLASDFFDSFTTSAFVSV 240
Cdd:PHA03307    90 WSLSTLAPASPAREGSPT--PPGPSSPDPPPPTPPPASPPPSPAPDlSEMLRPVGSPGPPPAASPPAAGASPAAVASDAA 167

                          170       180
                   ....*....|....*....|....*..
gi 1622856811  241 SNPGAGSPASASPPPVSVPGTEGRPEP 267
Cdd:PHA03307   168 SSRQAALPLSSPEETARAPSSPPAEPP 194
PHA03247 PHA03247
large tegument protein UL36; Provisional
 112-213 9.58e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 9.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811  112 TGEVHGDCAPEDAPEDAAPRSGGAPrqdAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPAPRDgfEPQMVKSPSFG 191
Cdd:PHA03247   370 AGRHHPKRASLPTRKRRSARHAATP---FARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPAT--PLPSAEPGSDD 444

                           90       100
                   ....*....|....*....|....*.
gi 1622856811  192 GASEAPARTPPQ----AVQPSPSLST 213
Cdd:PHA03247   445 GPAPPPERQPPApatePAPDDPDDAT 470
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 120-210 9.68e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 39.22  E-value: 9.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856811 120 APEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAP--PAPRDGFEPQMVKSPSFGGASEAP 197
Cdd:PHA03264  265 EPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGgePKPGPPRPAPDADRPEGWPSLEAI 344

                          90
                  ....*....|...
gi 1622856811 198 ARTPPQAVQPSPS 210
Cdd:PHA03264  345 TFPPPTPATPAVP 357
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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