|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
154-989 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1009.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQ 233
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 234 DELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:pfam10174 81 DELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDS 389
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 390 KISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLkeelsskeaqweelkkraaglqaevf 469
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQL-------------------------- 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 470 aigqvKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ 549
Cdd:pfam10174 295 -----KQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQ 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 550 DMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKE 629
Cdd:pfam10174 370 DLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKE 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 630 RTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQK 709
Cdd:pfam10174 450 RIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQK 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 710 KEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLT 789
Cdd:pfam10174 530 KEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLT 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 790 SRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQlqdslrkkddrieeleealresvqitaeremvlaq 869
Cdd:pfam10174 610 LRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQ----------------------------------- 654
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 870 eesartnaeKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANI 949
Cdd:pfam10174 655 ---------LQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANI 725
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 1622843288 950 ALLELSSS-KKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 989
Cdd:pfam10174 726 ALLELSSSkKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
413-975 |
2.82e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.31 E-value: 2.82e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 413 ALSTEEREeemKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEvfaIGQVKQELSRKDTELLALQTKL 492
Cdd:COG1196 217 ELKEELKE---LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE---LEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 493 ETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVK 572
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 573 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRD---RDEREKQEE 649
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEeeeEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 650 IDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKK-----------DSRLKTLEIALEQKKEECLKMES 718
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLleaeadyegflEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 719 QLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEvdRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNK 798
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG--RATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 799 KVANLKHKEQVEkkkSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAE 878
Cdd:COG1196 609 READARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 879 KQVEELLMAMEKVKQELESMKAklsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSS-- 956
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEER-----ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEpp 760
|
570
....*....|....*....
gi 1622843288 957 SKKKTQEEVAALKREKDRL 975
Cdd:COG1196 761 DLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
289-989 |
3.37e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 3.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 289 EEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVH--HLESLLEQKEkENNMLREEMHR 366
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLvlRLEELREELE-ELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 367 RFENApdSAKTKALQTVIEMKDSKISSMERGLRDLEE-------EIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNK 439
Cdd:TIGR02168 254 ELEEL--TAELQELEEKLEELRLEVSELEEEIEELQKelyalanEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 440 VEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRK----DTELLALQTKLETLTNQFSDSKQHIEVLKESLTA 515
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRleelEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 516 KEQRAAILQTEVDALRLRLEEKEtmlnkktkqIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEK 595
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAE---------LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 596 QMSSLKERVKSLQADTTNTDTALTTLEEALAEKER---TIERLKEQRDRDE-------------------REKQEEIDNY 653
Cdd:TIGR02168 483 ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgILGVLSELISVDEgyeaaieaalggrlqavvvENLNAAKKAI 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 654 KKDLKDLKEKVSLLQGD------LSEKEASLLDLKEHASSLASSGLKKDSRLK--------------TLEIALEQKKEEC 713
Cdd:TIGR02168 563 AFLKQNELGRVTFLPLDsikgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvdDLDNALELAKKLR 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 714 LKM-----ESQLKKAHEAALEARASPEMSD-----RIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIA 783
Cdd:TIGR02168 643 PGYrivtlDGDLVRPGGVITGGSAKTNSSIlerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 784 ELEsltsRQVKDQNKKVANLKHKEqvekkksaqmlEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAER 863
Cdd:TIGR02168 723 ELS----RQISALRKDLARLEAEV-----------EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 864 EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAIS 943
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1622843288 944 EKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 989
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-981 |
4.20e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.54 E-value: 4.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 398 LRDLEEEIQMLKSNGALSTEEREEEMKQMEVyrshskfMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEvfaIGQVKQE 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYELLAE---LARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 478 LSRKDTELLALQTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGT 557
Cdd:COG1196 304 IARLEERRRELEERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 558 QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKE 637
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 638 QRDRDEREKQEEidnyKKDLKDLKEKVSLLQGDLSEKEASLLDLKEhasSLASSGLKKDSRLKTLEIALEQKKEECLKME 717
Cdd:COG1196 457 EEEALLELLAEL----LEEAALLEAALAELLEELAEAAARLLLLLE---AEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 718 SQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEvdRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQN 797
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG--RATFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 798 KKVANLKHKEQVEkkkSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNA 877
Cdd:COG1196 608 LREADARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 878 EKQVEELLMAMEKVKQELESMKAklsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSs 957
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEER-----ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE- 758
|
570 580
....*....|....*....|....
gi 1622843288 958 kkktQEEVAALKREKDRLVQQLKQ 981
Cdd:COG1196 759 ----PPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-986 |
5.59e-20 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 96.75 E-value: 5.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 351 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEE--REEEMKQMEV 428
Cdd:PTZ00121 1113 EARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAarKAEEVRKAEE 1192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 429 YRSHSKFMK-NKVEQLKEELSSKEAQWEELKKRAAGLQaevfaigqvKQELSRKDTELLALQTKL---ETLTNQFSDSKQ 504
Cdd:PTZ00121 1193 LRKAEDARKaEAARKAEEERKAEEARKAEDAKKAEAVK---------KAEEAKKDAEEAKKAEEErnnEEIRKFEEARMA 1263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 505 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIHDLKDMLDVKERKVNVLQKKIE 584
Cdd:PTZ00121 1264 HFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK----KADEAKKKAEEAKKKADAAKKKAE 1339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 585 nlqEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKv 664
Cdd:PTZ00121 1340 ---EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA- 1415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 665 sllqgdlSEKEASLLDLKEHASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEA--ALEARASPEMSDRIQH 742
Cdd:PTZ00121 1416 -------AKKKADEAKKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKAEEAKKKAEEAkkADEAKKKAEEAKKADE 1487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 743 LER---EITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLE 819
Cdd:PTZ00121 1488 AKKkaeEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 820 EARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAERemvLAQEESARTNAEKQVEEllmamEKVKQELESMK 899
Cdd:PTZ00121 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE---AKKAEEAKIKAEELKKA-----EEEKKKVEQLK 1639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 900 AKLSSTQQSLAE--KETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQ 977
Cdd:PTZ00121 1640 KKEAEEKKKAEElkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
....*....
gi 1622843288 978 QLKQQTQNR 986
Cdd:PTZ00121 1720 ELKKAEEEN 1728
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-982 |
3.05e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.97 E-value: 3.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 203 DEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQdsssrtgepcvAELTEEnFQRLHAEHERQAKEL 281
Cdd:TIGR02168 162 EEAAGISKYKERRKETERKLERTRENLDRLEDILNeLERQLKSLERQ-----------AEKAER-YKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 282 FLLRktleemelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-RLAEAEMHVHHLES-LLEQKEKENNM 359
Cdd:TIGR02168 230 LVLR---------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEEIEELQKeLYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 360 LREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSN-----GALSTEEREEEM---------KQ 425
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEElesleAELEELEAELEElesrleeleEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 426 MEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQ---------VKQELSRKDTELLALQTKLETLT 496
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaelkeLQAELEELEEELEELQEELERLE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 497 NQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETmLNKKTKQIQDMAEEKGtqaGEIHDLKDMLDVKER-- 574
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLS---GILGVLSELISVDEGye 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 575 --KVNVLQKKI-----ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQ 647
Cdd:TIGR02168 537 aaIEAALGGRLqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 648 ------------EEIDNYKKDLKDLKEKVSL--LQGDLSEKEASLLdlkEHASSLASSGLKKDSRLKTLEIALEQKKEEC 713
Cdd:TIGR02168 617 alsyllggvlvvDDLDNALELAKKLRPGYRIvtLDGDLVRPGGVIT---GGSAKTNSSILERRREIEELEEKIEELEEKI 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 714 LKMESQLKKAHEAALEA--------RASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAEL 785
Cdd:TIGR02168 694 AELEKALAELRKELEELeeeleqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 786 ESL---TSRQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAE 862
Cdd:TIGR02168 774 EEElaeAEAEIEELEAQIEQL----KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 863 REMVLAQeesartnAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 942
Cdd:TIGR02168 850 LSEDIES-------LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 943 SEKDANIALLE-----------LSSSKKKTQEEVAALKREKDRLVQQLKQQ 982
Cdd:TIGR02168 923 KLAQLELRLEGlevridnlqerLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
323-976 |
4.37e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.13 E-value: 4.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 323 AKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENN------MLREEMhRRFENAPDSAKTKALQTVIEMKDSKISSMER 396
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqALLKEK-REYEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 397 GLRDLEEEIQML-KSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEV----FAI 471
Cdd:TIGR02169 252 ELEKLTEEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLakleAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 472 GQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDM 551
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 552 AEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERT 631
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 632 IERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQ--GDLSEKEASLLD------------------------LKEH- 684
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAqlGSVGERYATAIEvaagnrlnnvvveddavakeaielLKRRk 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 685 -------------ASSLASSGLKKDS------------------------------------------RLKTLEIALEQK 709
Cdd:TIGR02169 572 agratflplnkmrDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgkyRMVTLEGELFEK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 710 KEECLKMESQLKKAHEAALEARAS-PEMSDRIQHLEREITRYKDESSKAQAEVDRLL-----------EILKEVENEKND 777
Cdd:TIGR02169 652 SGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDELSqelsdasrkigEIEKEIEQLEQE 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 778 KDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR------EDNLNDSS-QQLQDSLRKKDDRIEELE 850
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEealndlEARLSHSRiPEIQAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 851 EALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEK-------ETHLTNLRAER 923
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdlESRLGDLKKER 891
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1622843288 924 RKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLV 976
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
451-997 |
1.81e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.07 E-value: 1.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 451 EAQWEELKKRAAglQAEVFAigQVKQELSRKDTELLALqtkletltnqfsdskqHIEVLKESLTAKEQRAAILQTEVDAL 530
Cdd:COG1196 199 ERQLEPLERQAE--KAERYR--ELKEELKELEAELLLL----------------KLRELEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 531 RLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAD 610
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 611 TTNTDTALTTLEEALAEKERTIERLKEQRDRDER---EKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASS 687
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 688 LASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARAspemsdRIQHLEREITRYKDESSKAQAEVDRL--- 764
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE------LLAELLEEAALLEAALAELLEELAEAaar 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 765 LEILKEVENEKNDKDKKIAEL----------------------------ESLTSRQVKDQNKKVANLKHKEQVEKKKSA- 815
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAAlllaglrglagavavligveaayeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAg 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 816 -----QMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLmameK 890
Cdd:COG1196 573 ratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR----E 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 891 VKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKR 970
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
570 580
....*....|....*....|....*..
gi 1622843288 971 EKDRLVQQLKQQTQNRMKLMADNYEDD 997
Cdd:COG1196 729 QLEAEREELLEELLEEEELLEEEALEE 755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-902 |
1.11e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 335 RLAEAEMHVHHLESLLEQKEKENNMLREEmhrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGAL 414
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEEL----------EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 415 STEEREEEMKQMEVYRshskfmkNKVEQLKEELSSKEAQWEELKKRAAGLQAevfaigqvkqelsrkdtELLALQTKLET 494
Cdd:COG1196 293 LLAELARLEQDIARLE-------ERRRELEERLEELEEELAELEEELEELEE-----------------ELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 495 LTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKER 574
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 575 KVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRD-EREKQEEIDNY 653
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLlEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 654 KKDLKDLKEKVSLLQGDLS-----EKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEEC--------------L 714
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAvligvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflpldkiraraaL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 715 KMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVK 794
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 795 DQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESAR 874
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|....*...
gi 1622843288 875 TNAEKQVEELLMAMEKVKQELESMKAKL 902
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-989 |
1.33e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 302 LNARDESIKKLLEmlQSKGLSaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEmhrrfenAPDSAKTKALQ 381
Cdd:TIGR02168 150 IEAKPEERRAIFE--EAAGIS-KYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQ-------AEKAERYKELK 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 382 TVIEMKDSKISSMErgLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRShskfmknKVEQLKEELSSKEAQWEELKKRA 461
Cdd:TIGR02168 220 AELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEE-------KLEELRLEVSELEEEIEELQKEL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 462 AGLQAEvfaIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETML 541
Cdd:TIGR02168 291 YALANE---ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 542 NKKTKQIQDMAEEKGTQAGEIHDLkdmldvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL---------QADTT 612
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQL-------ELQIASLNNEIERLEARLERLEDRRERLQQEIEELlkkleeaelKELQA 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 613 NTDTALTTLEEALAEKERTIERLKEQRDRdEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKE---ASLLDLKEHASSLA 689
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREE-LEEAEQALDAAERELAQLQARLDSLERLQENLEgfsEGVKALLKNQSGLS 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 690 ------SSGLKKDSRLKT-LEIAL---------EQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDE 753
Cdd:TIGR02168 520 gilgvlSELISVDEGYEAaIEAALggrlqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEG 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 754 -----------SSKAQAEVDRLLEILKEVEN--EKNDKDKKIAELESLTSRQ----------VKDQNKKVANLKHKEQvE 810
Cdd:TIGR02168 600 flgvakdlvkfDPKLRKALSYLLGGVLVVDDldNALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILERRR-E 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 811 KKKSAQMLEEArrrEDNLNDSSQQLQDsLRKKDDRIEELEEALR----ESVQITAEREMVLAQEESARTNAEKQVEELLM 886
Cdd:TIGR02168 679 IEELEEKIEEL---EEKIAELEKALAE-LRKELEELEEELEQLRkeleELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 887 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVA 966
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
730 740
....*....|....*....|...
gi 1622843288 967 ALKREKDRLVQQLKQQTQNRMKL 989
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESL 857
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-902 |
4.39e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 4.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 230 QALQDELRiQRDLNQLFQQDsssrtgepcvaELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:COG1196 216 RELKEELK-ELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 310 KKLLemlqskglsakatEEDHERTRRLAEAEMHVHHLESLLEQKEKEnnmlreemhrrfenapdsaktkalqtviemkds 389
Cdd:COG1196 284 EEAQ-------------AEEYELLAELARLEQDIARLEERRRELEER--------------------------------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 390 kissmergLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYrshskfmKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVF 469
Cdd:COG1196 318 --------LEELEEELAELEEELEELEEELEELEEELEEA-------EEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 470 AIgqvKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ 549
Cdd:COG1196 383 EL---AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 550 DMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEK- 628
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAa 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 629 --ERTIERLKEQRDRDEREKQEEIDnykkdlkdlkekvsLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 706
Cdd:COG1196 540 leAALAAALQNIVVEDDEVAAAAIE--------------YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 707 EQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITrykdESSKAQAEVDRLLEILKEVENEKNDKDKKIAELE 786
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR----EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 787 SLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMV 866
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1622843288 867 LAQEESARTNAEKQVEEL----LMAME---KVKQELESMKAKL 902
Cdd:COG1196 762 LEELERELERLEREIEALgpvnLLAIEeyeELEERYDFLSEQR 804
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
382-902 |
1.13e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.44 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 382 TVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWE------ 455
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEqnnkki 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 456 -ELKKRAAGLQAEVFAIGQVKQELSRKD--TELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRL 532
Cdd:TIGR04523 284 kELEKQLNQLKSEISDLNNQKEQDWNKElkSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 533 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTT 612
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 613 NTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEK---EASLLDLKEHASSLA 689
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVKDLTKKISSLK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 690 SSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAheaalearaspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILK 769
Cdd:TIGR04523 524 EKIEKLESEKKEKESKISDLEDELNKDDFELKKE-----------NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 770 EVENEKNDKDKKIAELESLTS------RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSS----QQLQDSL 839
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISslekelEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWpeiiKKIKESK 672
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622843288 840 RKKDDRIEELEEALRESVQITAER--EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 902
Cdd:TIGR04523 673 TKIDDIIELMKDWLKELSLHYKKYitRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
265-979 |
2.10e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.10 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 265 ENFQRLHAEHErQAKELFLLRKTLEEMELRIETQKqtLNARDESIKKLLEMLQSKglsakaTEEDHERTRRLAEAEMHVH 344
Cdd:TIGR02169 198 QQLERLRRERE-KAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQLASL------EEELEKLTEEISELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 345 HLESLLEQKEKENNMLREEMHRRFEnapdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMK 424
Cdd:TIGR02169 269 EIEQLLEELNKKIKDLGEEEQLRVK-----EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 425 QMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVfaiGQVKQELSRKDTELLALQTKLETLTNQFSDSKQ 504
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL---KDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 505 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIE 584
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 585 NLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL----------------AEKERTIERLKEQRD-------- 640
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIevaagnrlnnvvveddAVAKEAIELLKRRKAgratflpl 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 641 ---RDER----------------------EKQEEIDNYKKDLKDLKEKVSL------------LQGDLSEKEASL----- 678
Cdd:TIGR02169 581 nkmRDERrdlsilsedgvigfavdlvefdPKYEPAFKYVFGDTLVVEDIEAarrlmgkyrmvtLEGELFEKSGAMtggsr 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 679 --LDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARAS-PEMSDRIQHLEREITRYKDESS 755
Cdd:TIGR02169 661 apRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKiGEIEKEIEQLEQEEEKLKERLE 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 756 KAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR-EDNLNDSSQQ 834
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRiEARLREIEQK 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 835 LQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEEsartNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKET 914
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE----NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622843288 915 HLTNLR---------AERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQL 979
Cdd:TIGR02169 897 QLRELErkieeleaqIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
449-856 |
5.58e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 5.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 449 SKEAQWEELKKRAAGLQAEVFAIgqvKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVD 528
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSL---QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 529 ALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDvkerkvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQ 608
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 609 ADTTNTDTALTTLEEALAEKERTIERLKEQRDrdEREKQEEIDNYKKDLkdlkekvslLQGDLSEKEASLLDLKEHASSL 688
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK--SIEKEIENLNGKKEE---------LEEELEELEAALRDLESRLGDL 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 689 ASSGLKKDSRLKTLEIALEQkkeecLKMESQLKKAHEAALEARASpEMSDRIQHLEREITRYKdESSKAQAEVDRLLEIL 768
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEE-----LEAQIEKKRKRLSELKAKLE-ALEEELSEIEDPKGEDE-EIPEEELSLEDVQAEL 960
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 769 KEVENEkndkdkkIAELESLTSRQVKDqnkkvanlkhkeqvekkksaqmLEEARRREDNLNDSSQQLQDSLRKKDDRIEE 848
Cdd:TIGR02169 961 QRVEEE-------IRALEPVNMLAIQE----------------------YEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
....*...
gi 1622843288 849 LEEALRES 856
Cdd:TIGR02169 1012 YEKKKREV 1019
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
384-973 |
7.29e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.75 E-value: 7.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 384 IEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKraag 463
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK---- 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 464 lqaevfAIGQVKQELSRKDTELLALQTKLE---TLTNQFSDSKQHIEVLKESLTAKEQRaailqtevdalrlrLEEKETM 540
Cdd:TIGR04523 188 ------NIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQE--------------INEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 541 LNKKTKQIQDMAEEKgtqageiHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKER-----VKSLQADTTNTD 615
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQ-------NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 616 TALTTLEEALAEKERTIERLKEQRDRDEREKQE-EIDNykkdlkdlkekvSLLQGDLSEKEASLLDLKEHASSLASSGLK 694
Cdd:TIGR04523 321 KKLEEIQNQISQNNKIISQLNEQISQLKKELTNsESEN------------SEKQRELEEKQNEIEKLKKENQSYKQEIKN 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 695 KDSRLKTLEIALEQKKEECLKMESQLKKAHEaalearaspemsdRIQHLEREITRYKDESSKAQAEVDRLleilkevENE 774
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQ-------------EKELLEKEIERLKETIIKNNSEIKDL-------TNQ 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 775 KNDKDKKIAELESLTSRQvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALR 854
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESL-ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIE 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 855 ESVQITAEREMVLAQEES---------ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRK 925
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDelnkddfelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE 607
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1622843288 926 HLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKD 973
Cdd:TIGR04523 608 KEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
350-932 |
1.12e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.38 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 350 LEQKEKEnnmLREEMHRRFENAPDSAKTK-ALQTVIEMKDSKISSMErglrDLEEEIQMLKSNGALSTEEREEemkqmev 428
Cdd:PRK02224 211 LESELAE---LDEEIERYEEQREQARETRdEADEVLEEHEERREELE----TLEAEIEDLRETIAETEREREE------- 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 429 yrshskfmknkveqLKEELSSKEAQWEELKKRAAGLQAEVfaigqvkqELSRKDTELLALQtkLETLTNQFSDSKQHIEV 508
Cdd:PRK02224 277 --------------LAEEVRDLRERLEELEEERDDLLAEA--------GLDDADAEAVEAR--REELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 509 LKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQE 588
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 589 QLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALA-----------EKERTIERLKEQRDRDErEKQEEIDNYKKDL 657
Cdd:PRK02224 413 FLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvEGSPHVETIEEDRERVE-ELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 658 KDLKEKVSLLQgDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEAR-ASPEM 736
Cdd:PRK02224 492 EEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEeEAEEA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 737 SDRIQHLEREITRYKDESSKaqaeVDRLLEILKEVENekndkdkKIAELESLTSRqvkdqnkkvanlkhkeqveKKKSAQ 816
Cdd:PRK02224 571 REEVAELNSKLAELKERIES----LERIRTLLAAIAD-------AEDEIERLREK-------------------REALAE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 817 MLEEARRREDNLNDSSQQLQDSLrkKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQ---VEELLMAMEKVKQ 893
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEF--DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRE 698
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1622843288 894 ELESMKAK---LSSTQQSLAEKETHLTNLRAERRKHLEEVLE 932
Cdd:PRK02224 699 RREALENRveaLEALYDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
459-849 |
1.12e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 459 KRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKE 538
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 539 TMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAL 618
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 619 TTLEEALAEKERTIERLKEQRDRderekqeeidnykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSR 698
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEE-------------------------LSEDIESLAAEIEELEELIEELESELEALLNE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 699 LKTLEIALEQKKEECLKMESQLKKAHEAALEARaspemsDRIQHLEREITRYKDESSKAQAEVDRLLEILKE-------- 770
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELR------RELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltlee 955
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 771 VENEKNDKDKKIAELEsltsRQVKDQNKKVA-----NLKHKEQVEKKKsaQMLEEARRREDNLNDSSQQLQDSLRKKDDR 845
Cdd:TIGR02168 956 AEALENKIEDDEEEAR----RRLKRLENKIKelgpvNLAAIEEYEELK--ERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
....
gi 1622843288 846 IEEL 849
Cdd:TIGR02168 1030 ARER 1033
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
388-901 |
5.79e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 5.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 388 DSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHskfmKNKVEQLKEELSSKEAQWEELKKRAAGLQAE 467
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL----KEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 468 VFAIGQVKQELSRKDTELLALQ------TKLETLTNQFSDSKQHIEVLKESLtakEQRAAILQTEVDalrlRLEEKETML 541
Cdd:PRK03918 268 IEELKKEIEELEEKVKELKELKekaeeyIKLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK----ELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 542 NKKTKQIQDMAEEKGtQAGEIHDLKDMLDVKERKVNVLQKKIENLQeqLRDKEKQMSSLKERVKSLQADTTNTDTALTTL 621
Cdd:PRK03918 341 EELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 622 EEALAEKERTIERLKE--------QRDRDEREKQEEIDNYKKDlkdlkekVSLLQGDLSEKEASLLDLKEHASSLASSgL 693
Cdd:PRK03918 418 KKEIKELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAE-------LKRIEKELKEIEEKERKLRKELRELEKV-L 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 694 KKDSRLKTLEIALEQKKEeclkMESQLKKAHEAALEARASP--EMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEV 771
Cdd:PRK03918 490 KKESELIKLKELAEQLKE----LEEKLKKYNLEELEKKAEEyeKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 772 ENEKNDKDKKIAELESLTSRQVKDQNKKVANLK--HKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEEL 849
Cdd:PRK03918 566 DELEEELAELLKELEELGFESVEELEERLKELEpfYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622843288 850 EEALRESVQITAERE------------MVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAK 901
Cdd:PRK03918 646 RKELEELEKKYSEEEyeelreeylelsRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
434-934 |
1.24e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.94 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 434 KFMKNKVEQLKEELSSKEaqweELKKRAAGLQAEvfaIGQVKQELSRKDTELLALQTKLETLtnqfSDSKQHIEVLKESL 513
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTE----NIEELIKEKEKE---LEEVLREINEISSELPELREELEKL----EKEVKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 514 TAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE---------EKGTQAGEIHDLKDMLDVKERKVNV----LQ 580
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEkvkelkelkEKAEEYIKLSEFYEEYLDELREIEKrlsrLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 581 KKIENLQEQLRD---KEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERtIERLKEQRDRDEREK-QEEIDNYKKD 656
Cdd:PRK03918 321 EEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE-LERLKKRLTGLTPEKlEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 657 LKDLKEKVSLLQGDLSEKEASLLDLK----------------------EHASSLASSGLKKDSRLKTLEIALEQKKEECL 714
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKkaieelkkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 715 KMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAE------------------VDRLLEILKEVENEKN 776
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 777 DKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRES 856
Cdd:PRK03918 560 ELEKKLDELE----EELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEEL 635
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622843288 857 VQITAEREMVLAQ-EESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 934
Cdd:PRK03918 636 AETEKRLEELRKElEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
154-981 |
1.43e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.94 E-value: 1.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALrkdEASKITIWKEQYRVvQEENQHMQMTIQALQ 233
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL---ERQKEAIERQLASL-EEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 234 DEL-RIQRDLNQLFQQdsssrtgepcVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKL 312
Cdd:TIGR02169 265 KRLeEIEQLLEELNKK----------IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 313 LEmlQSKGLSAKATEEDHER---TRRLAEAEMHVHHLESLLEQKEKENNMLREEmhrrfenapdsakTKALQTVIEMKDS 389
Cdd:TIGR02169 335 LA--EIEELEREIEEERKRRdklTEEYAELKEELEDLRAELEEVDKEFAETRDE-------------LKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 390 KISSMERGLRDLEEEIQMLksngalsTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVF 469
Cdd:TIGR02169 400 EINELKRELDRLQEELQRL-------SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 470 AI----GQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA-----------KEQRAAILQ---------- 524
Cdd:TIGR02169 473 DLkeeyDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgtvaqlgsvGERYATAIEvaagnrlnnv 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 525 ---TEVDALRLRLEEKETMLNKKT----KQIQDMAEEKG--TQAGEIHDLKDMLDVKERKVNVL---------------- 579
Cdd:TIGR02169 553 vveDDAVAKEAIELLKRRKAGRATflplNKMRDERRDLSilSEDGVIGFAVDLVEFDPKYEPAFkyvfgdtlvvedieaa 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 580 -----QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDER---EKQEEID 651
Cdd:TIGR02169 633 rrlmgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELS 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 652 NYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLkkaheAALEAR 731
Cdd:TIGR02169 713 DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL-----NDLEAR 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 732 ASPEmsdRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEK 811
Cdd:TIGR02169 788 LSHS---RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLN 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 812 KKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnAEKQVEELLMAMEKV 891
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-----------KRKRLSELKAKLEAL 929
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 892 KQELESMKAKLSSTQQSLAEkETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKRE 971
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
890
....*....|
gi 1622843288 972 KDRLVQQLKQ 981
Cdd:TIGR02169 1009 IEEYEKKKRE 1018
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
195-1027 |
6.82e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 6.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 195 KKERALRKDEASKItiwkEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEH 274
Cdd:PTZ00121 1117 AEEAKKKAEDARKA----EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEE 1192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 275 ERQAKELFLLRKTLE-EMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQK 353
Cdd:PTZ00121 1193 LRKAEDARKAEAARKaEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI 1272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 354 EKENNMLREEMHRRFE--NAPDSAKTKALQTVIEMKdsKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRS 431
Cdd:PTZ00121 1273 KAEEARKADELKKAEEkkKADEAKKAEEKKKADEAK--KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 432 HSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAevfaigqvKQELSRKDTELlalQTKLETLTNQFSDSKQHIEVLKE 511
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK--------KAEEKKKADEA---KKKAEEDKKKADELKKAAAAKKK 1419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 512 SLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ--DMAEEKGTQAGEIHDLKDMLDVKeRKVNVLQKKIENLQEQ 589
Cdd:PTZ00121 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKkaEEAKKKAEEAKKADEAKKKAEEA-KKADEAKKKAEEAKKK 1498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 590 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAlaEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQG 669
Cdd:PTZ00121 1499 ADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA--KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 670 DLSEKEASLLdlkehasslassglKKDSRLKTLEIALEQKKEECLKMEsQLKKAHEAALEARASPEmsdriqhlEREITR 749
Cdd:PTZ00121 1577 NMALRKAEEA--------------KKAEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKK--------AEEEKK 1633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 750 YKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELEsltsrqvkDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLN 829
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA--------EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 830 DSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSL 909
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 910 AEKETHLTNLRAERRKHLEEVLEMKQEAllaaisekdANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 989
Cdd:PTZ00121 1786 DEEDEKRRMEVDKKIKDIFDNFANIIEG---------GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNK 1856
|
810 820 830
....*....|....*....|....*....|....*...
gi 1622843288 990 MADNYEDDHFKSSHSNQTNHKpspDQIIQPLLELDQNR 1027
Cdd:PTZ00121 1857 NNENGEDGNKEADFNKEKDLK---EDDEEEIEEADEIE 1891
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
491-1035 |
1.31e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 491 KLETLTNQFSDSKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 568
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 569 LDVKERK---VNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALttlEEALAEKERT---IERLKEQRDRD 642
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAGLDdadAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 643 EREKQEeidnykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLeialeqkKEECLKMESQLKK 722
Cdd:PRK02224 320 EDRDEE------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-------REEAAELESELEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 723 AHEAALEARaspemsDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELEsltsrqvkdqnkkvAN 802
Cdd:PRK02224 375 AREAVEDRR------EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE--------------AT 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 803 LKHKEQVeKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARtNAEKQVE 882
Cdd:PRK02224 435 LRTARER-VEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIE 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 883 ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKK-- 960
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESle 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 961 ----TQEEVAALKREKDRLVQQLKQQ----TQNRMKL---------MADNYEDDHFKSSHSNQTNHKPSPDQIIQPLLEL 1023
Cdd:PRK02224 593 rirtLLAAIADAEDEIERLREKREALaelnDERRERLaekrerkreLEAEFDEARIEEAREDKERAEEYLEQVEEKLDEL 672
|
570
....*....|..
gi 1622843288 1024 DQNRSKLKLYIG 1035
Cdd:PRK02224 673 REERDDLQAEIG 684
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
261-884 |
2.09e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.09 E-value: 2.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 261 ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglsakaTEEDHERTRRLAEAE 340
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL------REELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 341 MHVHHLESLLEQKEKENNMLREEmhrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALST--EE 418
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKL----------EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 419 REEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIgqvkQELSRKDTELLALQTKLETLTNQ 498
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL----EERHELYEEAKAKKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 499 FSDskQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmlDVKERKVNV 578
Cdd:PRK03918 381 LTG--LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 579 LQKKIENLQEQLRDKEKQMSSLKERVKSLQadttntdtALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLK 658
Cdd:PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELRELE--------KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 659 DLKEKVSLLQGDLSEKEASLLDLKEhasslassgLKKdsRLKTLEIALEQKKEECLKMESQLKKAHEAALEaraspEMSD 738
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELEKLEE---------LKK--KLAELEKKLDELEEELAELLKELEELGFESVE-----ELEE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 739 RIQHLEREITRYKdESSKAQAEVDRLLEILKEVENEKNDKDKKIAELES---LTSRQVKDQNKKVANLKHKEQVEKKKSA 815
Cdd:PRK03918 593 RLKELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEELAETEKrleELRKELEELEKKYSEEEYEELREEYLEL 671
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622843288 816 QM-LEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQI-------TAEREMVLAQEESARTNAEKQVEEL 884
Cdd:PRK03918 672 SReLAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLekalervEELREKVKKYKALLKERALSKVGEI 748
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
437-975 |
6.80e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.52 E-value: 6.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 437 KNKVEQLKEELSSKEAQweELKKRAAGLQaevfaigqvkqelsrkdTELLALQTKLETLTNQFSDSKQHIEVLKESLTAK 516
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEK--DLHERLNGLE-----------------SELAELDEEIERYEEQREQARETRDEADEVLEEH 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 517 EQRAAILQT---EVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVK-------ERKVNVLQKKIENL 586
Cdd:PRK02224 247 EERREELETleaEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDdadaeavEARREELEDRDEEL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 587 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRdRDEREKQEEIDNYKKDLKDLKEKVSL 666
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV-EDRREEIEELEEEIEELRERFGDAPV 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 667 LQGDLSEKEASLLDLKEHASslassglkkdSRLKTLEIALEQkkeeclkMESQLKKAhEAALEARASPEMSDRIqhlerE 746
Cdd:PRK02224 406 DLGNAEDFLEELREERDELR----------EREAELEATLRT-------ARERVEEA-EALLEAGKCPECGQPV-----E 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 747 ITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESL--TSRQVKDQNKKVANLkhKEQVEKKKSAqmLEEARRR 824
Cdd:PRK02224 463 GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLveAEDRIERLEERREDL--EELIAERRET--IEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 825 EDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKqVEELLMAMEKVKQELESMKAKLSS 904
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREA 617
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622843288 905 TQQSLAEKETHLTNLRaERRKHLEEvlEMKQEALLAAISEKD------ANIA--LLELSSSKKKTQEEVAALKREKDRL 975
Cdd:PRK02224 618 LAELNDERRERLAEKR-ERKRELEA--EFDEARIEEAREDKEraeeylEQVEekLDELREERDDLQAEIGAVENELEEL 693
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-600 |
1.19e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 277 QAKELFLLRKTLEEMELRIETQKQTLNArdesIKKLLEMLQSKGLSAKATEEDHERTRRLAEaemhvhhlESLLEQKEKE 356
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAE----LRKELEELEEELEQLRKELEELSRQISALR--------KDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 357 NNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQmlKSNGALSTEEREEEMKQMEVYRSHSKF- 435
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--QLKEELKALREALDELRAELTLLNEEAa 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 436 -MKNKVEQLKEELSSKEAQWEELKKRAAGLQAEvfaIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLT 514
Cdd:TIGR02168 821 nLRERLESLERRIAATERRLEDLEEQIEELSED---IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 515 AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL-KDMLDVKERKVNVLQKKIENLQEQLRDK 593
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....*..
gi 1622843288 594 EKQMSSL 600
Cdd:TIGR02168 978 ENKIKEL 984
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
259-945 |
1.77e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 62.29 E-value: 1.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 259 VAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAE 338
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 339 AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEE 418
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 419 REEEMKQMEVYRSHSKF-MKNKVEQLKEELSSKEaqwEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTN 497
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIrDAHEVATSIREISCQQ---HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTS 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 498 QFSDSKQHIEVLKESLTAKEQRAAILQtevdalrLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVN 577
Cdd:TIGR00618 418 AFRDLQGQLAHAKKQQELQQRYAELCA-------AAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 578 VLQKKIENLQEQLRDKEKQMSSLKERVKSL------QADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEID 651
Cdd:TIGR00618 491 VVLARLLELQEEPCPLCGSCIHPNPARQDIdnpgplTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 652 NYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL-EQKKEECLKMESQLKKAHEAALEA 730
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQdLQDVRLHLQQCSQELALKLTALHA 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 731 RASPEMSDRIQHLEREITRYKDES--------SKAQAEVDRLLEIlKEVENEKNDKDKKIAELESLTSRQVKDQNKKVAN 802
Cdd:TIGR00618 651 LQLTLTQERVREHALSIRVLPKELlasrqlalQKMQSEKEQLTYW-KEMLAQCQTLLRELETHIEEYDREFNEIENASSS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 803 LKHKEQVEKKKSAQMLEEARRRED-------NLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQ-EESAR 874
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKELMHQARtvlkartEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTlEAEIG 809
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 875 TNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLrAERRKHLEEVleMKQEALLAAISEK 945
Cdd:TIGR00618 810 QEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQL--TQEQAKIIQLSDK 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
452-652 |
2.16e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 452 AQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALR 531
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 532 LRLEEKETMLNKKTKQIQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL 607
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1622843288 608 QADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDN 652
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
490-988 |
3.01e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 61.39 E-value: 3.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 490 TKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE-EKGTQAGEIHDLKDM 568
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 569 LDV-KERKVNVLQKKIENL---QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEK-ERTIERLKEQRD--R 641
Cdd:pfam12128 324 LEAlEDQHGAFLDADIETAaadQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnNRDIAGIKDKLAkiR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 642 DEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASlldlKEHASSLASSGLKKDSRLKTLEIAL--EQKKEECLKMESQ 719
Cdd:pfam12128 404 EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEE----YRLKSRLGELKLRLNQATATPELLLqlENFDERIERAREE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 720 LKKAH----EAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLL-----EILKEVENEKNDKDKKIAELES--- 787
Cdd:pfam12128 480 QEAANaeveRLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLfpqagTLLHFLRKEAPDWEQSIGKVISpel 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 788 ---------LTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDnlndssqQLQDSLRKKDDRIEELEEALresVQ 858
Cdd:pfam12128 560 lhrtdldpeVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLD-------KAEEALQSAREKQAAAEEQL---VQ 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 859 ITAEREMVLAQEESART---NAEKQVEELLMAME----KVKQELESMKAKLSSTQQSLAEKETHLTN----LRAERRKHL 927
Cdd:pfam12128 630 ANGELEKASREETFARTalkNARLDLRRLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKkhqaWLEEQKEQK 709
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 928 EEVLEMKQEALLAAISEKDANIALLElssskkktqEEVAALKREKDRLVQQLKQQTQNRMK 988
Cdd:pfam12128 710 REARTEKQAYWQVVEGALDAQLALLK---------AAIAARRSGAKAELKALETWYKRDLA 761
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
150-804 |
3.16e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.29 E-value: 3.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 150 TIMDLQTQLKEVLRENDLLrKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTI 229
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAM-ADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 230 QALQDELRiQRDLNQLFQQDSSS----RTGEPCVAEL-----------------TEENFQRLHAEHERQAKELFL----- 283
Cdd:pfam15921 190 RSILVDFE-EASGKKIYEHDSMStmhfRSLGSAISKIlreldteisylkgrifpVEDQLEALKSESQNKIELLLQqhqdr 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 284 LRKTLEEMELRIE--TQK-QTLNARDESIKKLLEMLQSkglsaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNML 360
Cdd:pfam15921 269 IEQLISEHEVEITglTEKaSSARSQANSIQSQLEIIQE-----QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDK 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 361 REEMHRRFENAPD---SAKTKALQTVIEMK--DSKISSMERGLRDLEEEIQMLKSNG------------ALSTEEREEEM 423
Cdd:pfam15921 344 IEELEKQLVLANSeltEARTERDQFSQESGnlDDQLQKLLADLHKREKELSLEKEQNkrlwdrdtgnsiTIDHLRRELDD 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 424 KQMEVYRSHS--KFMKNKVE-QLKEELSSKEAQWEELKKRA---AGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTN 497
Cdd:pfam15921 424 RNMEVQRLEAllKAMKSECQgQMERQMAAIQGKNESLEKVSsltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTA 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 498 QFSDSKQHIEVLKESLTAKEQRAAI-----------------LQTEVDALRLRLEEKETMLNKKTKQIQDMAE---EKGT 557
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLklqelqhlknegdhlrnVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgQHGR 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 558 QAGEIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDtalttleEALAEKERTIERLKE 637
Cdd:pfam15921 584 TAGAMQVEKAQL---EKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLV-------NAGSERLRAVKDIKQ 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 638 QRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKME 717
Cdd:pfam15921 654 ERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQ 733
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 718 SQLkKAHEAALEAraspeMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNdkdKKIAELESLTSrQVKDQN 797
Cdd:pfam15921 734 KQI-TAKRGQIDA-----LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKN---KMAGELEVLRS-QERRLK 803
|
....*..
gi 1622843288 798 KKVANLK 804
Cdd:pfam15921 804 EKVANME 810
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
193-991 |
3.69e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 3.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSS-------RTGEPCVAELTEE 265
Cdd:pfam02463 203 KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKeeeklaqVLKENKEEEKEKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 266 NFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEmhVHH 345
Cdd:pfam02463 283 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEE--EEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 346 LESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQ 425
Cdd:pfam02463 361 LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 426 MEvyRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQH 505
Cdd:pfam02463 441 LK--QGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKD 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 506 IEVLKesLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIen 585
Cdd:pfam02463 519 GVGGR--IISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSI-- 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 586 lqeqlrdkekqmsSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVS 665
Cdd:pfam02463 595 -------------AVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEK 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 666 LLQGDLSEKEASLLDLKEHASSLASSglkkDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEaraspemsDRIQHLER 745
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAES----ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE--------LLADRVQE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 746 EITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE 825
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEE 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 826 DNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLmaMEKVKQELESMKAKLSST 905
Cdd:pfam02463 810 LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL--QELLLKEEELEEQKLKDE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 906 QQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQN 985
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL 967
|
....*.
gi 1622843288 986 RMKLMA 991
Cdd:pfam02463 968 AKEELG 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-608 |
6.92e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 6.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 264 EENFQRLHAEHERQAKELFLLRKTLEEMelriETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEmhv 343
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEEL----EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--- 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 344 hhLESLLEQKEKENNMLREEmhrRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEM 423
Cdd:TIGR02168 756 --LTELEAEIEELEERLEEA---EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 424 KQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEvfaIGQVKQELSRKDTELLALQTKLETLTNQFSDSK 503
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE---LEALLNERASLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 504 QHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqageIHDLKDMLDVKERKVNVLQKKI 583
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAL------ENKIEDDEEEARRRLKRLENKI 981
|
330 340 350
....*....|....*....|....*....|....*....
gi 1622843288 584 ENL--------------QEQLRDKEKQMSSLKERVKSLQ 608
Cdd:TIGR02168 982 KELgpvnlaaieeyeelKERYDFLTAQKEDLTEAKETLE 1020
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
392-981 |
2.26e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.59 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 392 SSMERGLRDLEEEIQMLKsnGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAI 471
Cdd:pfam15921 220 SAISKILRELDTEISYLK--GRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 472 G---QVKQELSRKDTELLALQ-TKLETLTNQFSDSkqhievLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 547
Cdd:pfam15921 298 QsqlEIIQEQARNQNSMYMRQlSDLESTVSQLRSE------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 548 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK-------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTT 620
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 621 LEEALAEKERTIERLKEQRDRDE---REKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASS---GLK 694
Cdd:pfam15921 452 AIQGKNESLEKVSSLTAQLESTKemlRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKLQ 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 695 KDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPE-MSDRIQHLEREITRYKDESSKAQAEV-DRLLEiLKEVE 772
Cdd:pfam15921 532 ELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLE-LQEFK 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 773 NEKNDKDKKIAELESLTS----RQVKDQNKKVANLKHKEQVEKKKSaQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEE 848
Cdd:pfam15921 611 ILKDKKDAKIRELEARVSdlelEKVKLVNAGSERLRAVKDIKQERD-QLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 849 LEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLE 928
Cdd:pfam15921 690 METTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKE 769
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1622843288 929 EVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 981
Cdd:pfam15921 770 EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
672-981 |
7.92e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 7.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 672 SEKEASLLDLKEHASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEAAL--------EARASPEMSDR-IQH 742
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLE-RLRREREKAERYQALLKEKREYEGyellkekeALERQKEAIERqLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 743 LEREITRYKDESSKAQAEVDRLLEILKEV--------ENEKNDKDKKIAELES----------LTSRQVKDQNKKVANLK 804
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAeiaslersiaEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 805 ---HKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQV 881
Cdd:TIGR02169 329 aeiDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 882 EELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEalLAAISEKdaniaLLELSSSKKKT 961
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--LSKYEQE-----LYDLKEEYDRV 481
|
330 340
....*....|....*....|
gi 1622843288 962 QEEVAALKREKDRLVQQLKQ 981
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARA 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
735-992 |
1.35e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 735 EMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQ-NKKVANLKHKEQVEKKK 813
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELlKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 814 SA--QMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEAlrESVQITAEremvLAQEESARTNAEKQVEELLMAMEKV 891
Cdd:TIGR02169 247 ASleEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--EQLRVKEK----IGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 892 KQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQE--ALLAAISEKDANIALL--ELSSSKKK---TQEE 964
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETrdELKDYREKlekLKRE 400
|
250 260
....*....|....*....|....*...
gi 1622843288 965 VAALKREKDRLVQQLKQQTQNRMKLMAD 992
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAA 428
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
285-791 |
2.71e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 285 RKTLEEMELRIETQKQTLNARDEsIKKLLEMLQskglsakATEEDHERTRrlAEAEMHVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK02224 233 RETRDEADEVLEEHEERREELET-LEAEIEDLR-------ETIAETERER--EELAEEVRDLRERLEELEEERDDLLAEA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 365 HRrfenapDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLK 444
Cdd:PRK02224 303 GL------DDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 445 EELSSKEAQWEELkkraaglqaevfaigqvkqelsrkDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQ 524
Cdd:PRK02224 377 EAVEDRREEIEEL------------------------EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 525 TEVDALRLRLEEKETMLNK----------KTKQIQDMAEEKGTQAGEihdLKDMLDVKERKVNVLQKKIENLqEQLRDKE 594
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRERVEE---LEAELEDLEEEVEEVEERLERA-EDLVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 595 KQMSSLKERVKSLQadttntdTALTTLEEALAEKERTIERLKEQRDRDE---REKQEEIDNYKKDLKDLKEKVSLLQGDL 671
Cdd:PRK02224 509 DRIERLEERREDLE-------ELIAERRETIEEKRERAEELRERAAELEaeaEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 672 SEKEASLLDLKEHASSLASSGlKKDSRLKTLEIALEQKKE------ECLKMESQLKKAHEAALEARASPEMSDRIQHLER 745
Cdd:PRK02224 582 AELKERIESLERIRTLLAAIA-DAEDEIERLREKREALAElnderrERLAEKRERKRELEAEFDEARIEEAREDKERAEE 660
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1622843288 746 EITRYKDESSKAQAEVDRLLEILKEVENEkndkdkkIAELESLTSR 791
Cdd:PRK02224 661 YLEQVEEKLDELREERDDLQAEIGAVENE-------LEELEELRER 699
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
473-992 |
3.38e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 473 QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESltAKEQRA------AILQTEVDALRLRLEEKETMLNKKtk 546
Cdd:pfam15921 268 RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQ--ARNQNSmymrqlSDLESTVSQLRSELREAKRMYEDK-- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 547 qIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTalttleeala 626
Cdd:pfam15921 344 -IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSI---------- 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 627 ekerTIERLKEQRDRDEREKQEeidnykkDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 706
Cdd:pfam15921 413 ----TIDHLRRELDDRNMEVQR-------LEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 707 EQKKEECLKMESQlkkaheaaleARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELE 786
Cdd:pfam15921 482 EELTAKKMTLESS----------ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECE 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 787 SLtSRQVKDQNKKVANLKhkEQVEK---------KKSAQMLEEARRREDNLNDSSQQLQDSL---RKKDDRIEELE---- 850
Cdd:pfam15921 552 AL-KLQMAEKDKVIEILR--QQIENmtqlvgqhgRTAGAMQVEKAQLEKEINDRRLELQEFKilkDKKDAKIRELEarvs 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 851 --------------EALRESVQITAEREMVLAQEESART--------------NAEKQVEELLMAMEKVKQELESMKAKL 902
Cdd:pfam15921 629 dlelekvklvnagsERLRAVKDIKQERDQLLNEVKTSRNelnslsedyevlkrNFRNKSEEMETTTNKLKMQLKSAQSEL 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 903 SSTQQSLAEKEThltnlraeRRKHLEEVLEMKQEALLAAISEKDANIALLE-LSSSKKKTQEEVAALKREKDRLVQQLKQ 981
Cdd:pfam15921 709 EQTRNTLKSMEG--------SDGHAMKVAMGMQKQITAKRGQIDALQSKIQfLEEAMTNANKEKHFLKEEKNKLSQELST 780
|
570
....*....|.
gi 1622843288 982 QTQNRMKLMAD 992
Cdd:pfam15921 781 VATEKNKMAGE 791
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
726-967 |
3.54e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 726 AALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKH 805
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 806 KEQVEKKKSAQMLEEARRREDNLNDSSQQlqdslrkkdDRIEELEEAlrESVQITAEREMVLAQEESARTNAEKQVEELL 885
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQ---------PPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 886 MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDANIALLELSSSKKKTQEEV 965
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR-LEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
..
gi 1622843288 966 AA 967
Cdd:COG4942 239 AA 240
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-979 |
4.46e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 388 DSKIssmERGLRDLEEEIQMLKSNGALSTEER------EEEMKQMEVYRSHSKfMKNKVEQ--LKEELSSKEAQWEELKK 459
Cdd:TIGR02169 169 DRKK---EKALEELEEVEENIERLDLIIDEKRqqlerlRREREKAERYQALLK-EKREYEGyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 460 RAAGLQAEvfaIGQVKQELSRKDTELLALQTKLETLTNQFSDskqhievlkesLTAKEQRAaiLQTEVDALRLRLEEKET 539
Cdd:TIGR02169 245 QLASLEEE---LEKLTEEISELEKRLEEIEQLLEELNKKIKD-----------LGEEEQLR--VKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 540 MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 619
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 620 TLEEALAEKERTIERLKEQRDRDEREKQE----------EIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLA 689
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRlseeladlnaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 690 SSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEM-SDRIQ---HLEREITRYKDESSKA--QAEVDR 763
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVlKASIQgvhGTVAQLGSVGERYATAieVAAGNR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 764 LLEILKEVENEKND-----KDKKIAELESLTSRQVKDQNKKVANLKHKEQV----------EKKKSA-----------QM 817
Cdd:TIGR02169 549 LNNVVVEDDAVAKEaiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIgfavdlvefdPKYEPAfkyvfgdtlvvED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 818 LEEARR--------------------------REDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEE 871
Cdd:TIGR02169 629 IEAARRlmgkyrmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 872 SARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAErRKHLEEVLEMKQEAlLAAISEKDANIAL 951
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE-LKELEARIEELEED-LHKLEEALNDLEA 786
|
650 660
....*....|....*....|....*...
gi 1622843288 952 LELSSSKKKTQEEVAALKREKDRLVQQL 979
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
567-783 |
5.25e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 567 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREK 646
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 647 QEEIDNYKK-------DLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 716
Cdd:COG4942 100 EAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622843288 717 ESQLKKAHEAALEARAspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIA 783
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
535-978 |
5.42e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 5.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 535 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 614
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 615 DTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLK 694
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 695 KDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILK----- 769
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 770 ----------EVENEKND-------------KDKKIAELESLTSRQVKDQNKKVANLKHKEQvekkKSAQMLEEARRRED 826
Cdd:pfam05483 469 ylkevedlktELEKEKLKnieltahcdklllENKELTQEASDMTLELKKHQEDIINCKKQEE----RMLKQIENLEEKEM 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 827 NLNDSSQQLQDSLRKKDD----RIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 902
Cdd:pfam05483 545 NLRDELESVREEFIQKGDevkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKG 624
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622843288 903 SSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 978
Cdd:pfam05483 625 SAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
390-1006 |
7.24e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.51 E-value: 7.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 390 KISSMERGLRDLEEEIQMLKSngalSTEEREEEMKQMEVYRShsKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVF 469
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKS----RKKQMEKDNSELELKME--KVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 470 AIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKE-----QRAAILQTEVD----ALRLRLEEKETM 540
Cdd:TIGR00606 330 KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfERGPFSERQIKnfhtLVIERQEDEAKT 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 541 LNKKTKQIQDMAEEKGTQAGEIHD-LKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 619
Cdd:TIGR00606 410 AAQLCADLQSKERLKQEQADEIRDeKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 620 TLEEALAE----KERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQgDLSEKEASLLDLKEHASSLASSGLKK 695
Cdd:TIGR00606 490 AEKNSLTEtlkkEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK-DKMDKDEQIRKIKSRHSDELTSLLGY 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 696 DSRLKTLEIALEQKKEECLKMESQLKKaheaalearaspeMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEV---E 772
Cdd:TIGR00606 569 FPNKKQLEDWLHSKSKEINQTRDRLAK-------------LNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsQ 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 773 NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSA--QMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELE 850
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 851 EALResvQITAEREMVLAQEESARTNAEKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH---L 927
Cdd:TIGR00606 716 SELK---KKEKRRDEMLGLAPGRQSIIDLKEKEI----PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcL 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 928 EEVLEMKQ-EALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQ 1006
Cdd:TIGR00606 789 TDVTIMERfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
622-1037 |
9.67e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 9.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 622 EEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKT 701
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 702 LEIALEQKKEECLKMESQLKK------AHEAALEARASPEMSD---RIQHLEREITRYKDESSKAQAEVDRLLEILKEVE 772
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKlqeeelKLLAKEEEELKSELLKlerRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 773 NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEA 852
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 853 LRESVQITAEREMVLAQEESARTNAEKQVEELlmamekVKQELESMKAKLSSTQQSLAEKETHLTnlrAERRKHLEEVLE 932
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEEL------EKQELKLLKDELELKKSEDLLKETQLV---KLQEQLELLLSR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 933 MKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTNHKPS 1012
Cdd:pfam02463 493 QKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTE 572
|
410 420
....*....|....*....|....*
gi 1622843288 1013 PDQIIQPLLELDQNRSKLKLYIGHL 1037
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVL 597
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
288-871 |
1.07e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 288 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLeleNIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 365 HRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKsngalSTEEREEEMKQMEVYRSHSKF-----MKNK 439
Cdd:PRK01156 242 NE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNYYK-----ELEERHMKIINDPVYKNRNYIndyfkYKND 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 440 VEQLKEELSSKEAQ---WEELKKRAAGLQAEVfaiGQVKQELSRKDtELLALQTKLETLTNQFSDSKQHIEVLKESLTAK 516
Cdd:PRK01156 307 IENKKQILSNIDAEinkYHAIIKKLSVLQKDY---NDYIKKKSRYD-DLNNQILELEGYEMDYNSYLKSIESLKKKIEEY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 517 EQRAAILQTEVDALRLRLEEKETMLNKKTKQIqdmaeekgtqageihdlKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ 596
Cdd:PRK01156 383 SKNIERMSAFISEILKIQEIDPDAIKKELNEI-----------------NVKLQDISSKVSSLNQRIRALRENLDELSRN 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 597 MSSLKERVK-----------SLQADTTNTDTALTTLEEALAEKERTI----ERLKEQRDRDEREKQEEIDNYKKDLKDlk 661
Cdd:PRK01156 446 MEMLNGQSVcpvcgttlgeeKSNHIINHYNEKKSRLEEKIREIEIEVkdidEKIVDLKKRKEYLESEEINKSINEYNK-- 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 662 ekvsllqgdLSEKEASLLDLKEHASSLASSGLKK---DSRLKTLEIA-LEQKKEECLKMESQLKKAHEAALEARA---SP 734
Cdd:PRK01156 524 ---------IESARADLEDIKIKINELKDKHDKYeeiKNRYKSLKLEdLDSKRTSWLNALAVISLIDIETNRSRSneiKK 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 735 EMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLtSRQVKDQNKKVANLKHKEQVEKKKS 814
Cdd:PRK01156 595 QLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKL-RGKIDNYKKQIAEIDSIIPDLKEIT 673
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 815 AQMLEEarrrEDNLNDSSQQLQD---SLRKKDDRIEELEEALRESVQITAEREMVLAQEE 871
Cdd:PRK01156 674 SRINDI----EDNLKKSRKALDDakaNRARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
461-648 |
1.22e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 461 AAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETM 540
Cdd:COG3883 1 ALALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 541 LNKKT----KQIQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ 608
Cdd:COG3883 81 IEERReelgERARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1622843288 609 ADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQE 648
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAE 200
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
438-922 |
1.23e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 438 NKVEQLKEELSSKEAQ--WEELKKRAAGLQAEvfaIGQVKQELSRKDTELLALQTKLETLTNQFSDS--------KQHIE 507
Cdd:COG4913 272 AELEYLRAALRLWFAQrrLELLEAELEELRAE---LARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 508 VLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqkkienLQ 587
Cdd:COG4913 349 RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD----------LR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 588 EQLRDKEKQMSSLKERVKS----LQADTTNTDTALTTLEEAL---------AEKERT----IER-LKEQR------DRDE 643
Cdd:COG4913 419 RELRELEAEIASLERRKSNiparLLALRDALAEALGLDEAELpfvgelievRPEEERwrgaIERvLGGFAltllvpPEHY 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 644 REKQEEIDNYK----------KDLKDLKEKVSLLQGDLSEK------------EASLL------------DLKEHASSLA 689
Cdd:COG4913 499 AAALRWVNRLHlrgrlvyervRTGLPDPERPRLDPDSLAGKldfkphpfrawlEAELGrrfdyvcvdspeELRRHPRAIT 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 690 SSGLKKDSRlktleIALEQKKEECLKMESQLKKAHEAALEARAspemsDRIQHLEREITRYKDESSKAQAEVDRL----- 764
Cdd:COG4913 579 RAGQVKGNG-----TRHEKDDRRRIRSRYVLGFDNRAKLAALE-----AELAELEEELAEAEERLEALEAELDALqerre 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 765 -LEILKEVENEKNDKDKKIAELESLTS--RQVKDQNKKVANLKhkeqvekkksaQMLEEARRREDNLNDSSQQLQDSLRK 841
Cdd:COG4913 649 aLQRLAEYSWDEIDVASAEREIAELEAelERLDASSDDLAALE-----------EQLEELEAELEELEEELDELKGEIGR 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 842 KDDRIEELEEALRESVQITAEREMVLAQEEsaRTNAEKQVEELLMAmEKVKQELESMKAKLSSTQQSLAEKETHLTNLRA 921
Cdd:COG4913 718 LEKELEQAEEELDELQDRLEAAEDLARLEL--RALLEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERAMR 794
|
.
gi 1622843288 922 E 922
Cdd:COG4913 795 A 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
728-935 |
1.44e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 728 LEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEIlKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKE 807
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 808 ----QVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKD-DRIEELEEALRESVQITAEREMVLAQ-EESART---NAE 878
Cdd:COG4913 297 leelRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARlEALLAAlglPLP 376
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622843288 879 KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQ 935
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-823 |
1.53e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 398 LRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQe 477
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 478 LSRKDTELLALQTKLETLTNQFSDSKQHIEVLKEsltaKEQRAAILQTEVDALRLRLEEKETMLNKKT-KQIQDMAEEKG 556
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 557 TQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ-----------------------------MSSLKERVKSL 607
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallallglggsllslILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 608 QADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASS 687
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 688 LASSGLKKDSR----------LKTLEIALEQK------KEECLKMESQL---KKAHEAALEARASPEMSDRIQHLEREIT 748
Cdd:COG4717 363 LQLEELEQEIAallaeagvedEEELRAALEQAeeyqelKEELEELEEQLeelLGELEELLEALDEEELEEELEELEEELE 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 749 RYKDESSKAQAEVDRLLEILKEVENEkNDKDKKIAELESLTSRqVKDQNKKVANLK--------HKEQVEKKKSAQMLEE 820
Cdd:COG4717 443 ELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAE-LRELAEEWAALKlalelleeAREEYREERLPPVLER 520
|
...
gi 1622843288 821 ARR 823
Cdd:COG4717 521 ASE 523
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
605-937 |
2.53e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 605 KSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDErEKQEEIDNYKKDLKDlkekvslLQGDLSEKEASLLDLKEH 684
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELE-EVLREINEISSELPE-------LREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 685 ASSLASSGLKKDSR---LKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEV 761
Cdd:PRK03918 237 KEEIEELEKELESLegsKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 762 DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKvanlkhkeqVEKKKSAQMLEEARRREDNLNDSSQQLQDslRK 841
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL---------EELEERHELYEEAKAKKEELERLKKRLTG--LT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 842 KDDRIEELEEALRESVQITAEREMVLAQeesaRTNAEKQVEELLMAMEkvkqELESMKAKLSSTQQSLAEKetHLTNLRA 921
Cdd:PRK03918 386 PEKLEKELEELEKAKEEIEEEISKITAR----IGELKKEIKELKKAIE----ELKKAKGKCPVCGRELTEE--HRKELLE 455
|
330
....*....|....*.
gi 1622843288 922 ERRKHLEEVLEMKQEA 937
Cdd:PRK03918 456 EYTAELKRIEKELKEI 471
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
445-989 |
3.03e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 445 EELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRkdtELLALQTKLETLTNQFSDS----------KQHIEVLKESLT 514
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE---EKNALQEQLQAETELCAEAeemrarlaarKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 515 AK----EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 590
Cdd:pfam01576 82 SRleeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 591 RDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERT---IERLKEQRDRDEREKQEEIdnykkdlKDLKEKVSLL 667
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQI-------AELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 668 QGDLSEKEASLLDLKehaSSLASSGLKKDSRLKTLEIALEQKKEECLKMESqlkkahEAALEARASPEMSDRIQHLEREI 747
Cdd:pfam01576 235 RAQLAKKEEELQAAL---ARLEEETAQKNNALKKIRELEAQISELQEDLES------ERAARNKAEKQRRDLGEELEALK 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 748 TRYKD--ESSKAQAEV-----DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKH-KEQVEKKKSAQMLE 819
Cdd:pfam01576 306 TELEDtlDTTAAQQELrskreQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnKANLEKAKQALESE 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 820 EARRRED--NLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELES 897
Cdd:pfam01576 386 NAELQAElrTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSS 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 898 MKAKLSSTQQSLAEKETHLTNLRA------ERRKHLEEVLEMKQEALLAAisEKDANIALLELSSSKKKTQEEVAA---- 967
Cdd:pfam01576 466 LESQLQDTQELLQEETRQKLNLSTrlrqleDERNSLQEQLEEEEEAKRNV--ERQLSTLQAQLSDMKKKLEEDAGTleal 543
|
570 580
....*....|....*....|....*...
gi 1622843288 968 ------LKREKDRLVQQLKQQTQNRMKL 989
Cdd:pfam01576 544 eegkkrLQRELEALTQQLEEKAAAYDKL 571
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
477-651 |
3.24e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 477 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 556
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 557 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLK 636
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 1622843288 637 EQRDRDEREKQEEID 651
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-605 |
3.82e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 389 SKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEv 468
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 469 faIGQVKQELSR--KDTELLALQTKLETLTNQ--FSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKK 544
Cdd:COG4942 99 --LEAQKEELAEllRALYRLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 545 TKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 605
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
468-608 |
4.99e-06 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 49.96 E-value: 4.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 468 VFAIGQ--VKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKT 545
Cdd:PRK09039 36 VFVVAQffLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 546 KQIQDMAEEKGTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKER 603
Cdd:PRK09039 116 GRAGELAQELDSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQR 188
|
....*
gi 1622843288 604 VKSLQ 608
Cdd:PRK09039 189 VQELN 193
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
738-967 |
6.96e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 738 DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQM 817
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 818 LEEARRREDNLND-----SSQQLQDSLrkkdDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVK 892
Cdd:COG3883 92 ARALYRSGGSVSYldvllGSESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL----EALK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622843288 893 QELESMKAKLsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 967
Cdd:COG3883 164 AELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
520-757 |
1.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 520 AAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 599
Cdd:COG4942 8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 600 LKERVKSLQAdttntdtALTTLEEALAEKERTIERLKEQ-------RDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLS 672
Cdd:COG4942 88 LEKEIAELRA-------ELEAQKEELAELLRALYRLGRQpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 673 EKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALE-ARASPEMSDRIQHLEREITRYK 751
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAElQQEAEELEALIARLEAEAAAAA 240
|
....*.
gi 1622843288 752 DESSKA 757
Cdd:COG4942 241 ERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
398-593 |
1.30e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 398 LRDLEEEIQMLKSNGALSTEEREEemkqmevyrshskfMKNKVEQLKEELSS----KEAQWEELkkRAAGLQAEVFAIGQ 473
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEA--------------LEAELDALQERREAlqrlAEYSWDEI--DVASAEREIAELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 474 VKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKEtmlNKKTKQIQDMAE 553
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE---DLARLELRALLE 752
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1622843288 554 EKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDK 593
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
421-652 |
1.32e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 421 EEMKQMEVYRSHSKFMKNKVEQLkEELSSKEAQWEELKKRAAGLQAEvfaigqvkqelsRKDTELLALQTKLETLTNQFS 500
Cdd:COG4913 232 EHFDDLERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYL------------RAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 501 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLeeketmLNKKTKQIQDMAEekgtqagEIHDLKDMLDVKERKVNVLQ 580
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAQI------RGNGGDRLEQLER-------EIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622843288 581 KKIENLQEQLRDKEKQmssLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRdrdeREKQEEIDN 652
Cdd:COG4913 366 ALLAALGLPLPASAEE---FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL----RELEAEIAS 430
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
775-971 |
1.68e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 775 KNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKsaqmlEEARRRednlndssQQLQDSLRKKDDRIEELEEALR 854
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKE-----EIHKLR--------NEFEKELRERRNELQKLEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 855 EsvqitaeREMVLaqeesartnaEKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 934
Cdd:PRK12704 93 Q-------KEENL----------DRKLELL----EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 1622843288 935 QEallaaisekDANIALLElsSSKKKTQEEVAALKRE 971
Cdd:PRK12704 152 AE---------EAKEILLE--KVEEEARHEAAVLIKE 177
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
384-536 |
1.80e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 48.92 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 384 IEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQmevyrshskfmknKVEQLKEELSSKEAQWEELKKRAAG 463
Cdd:COG0542 406 IDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRD-------------ELAELEEELEALKARWEAEKELIEE 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 464 LQAevfaigqVKQELSRKDTELLALQTKLETLTNQFSDSKQhieVLKESLTAkEQRAAI------------LQTEVDALr 531
Cdd:COG0542 473 IQE-------LKEELEQRYGKIPELEKELAELEEELAELAP---LLREEVTE-EDIAEVvsrwtgipvgklLEGEREKL- 540
|
....*
gi 1622843288 532 LRLEE 536
Cdd:COG0542 541 LNLEE 545
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-973 |
1.89e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.02 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 335 RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFE--------NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETElcaeaeemRARLAARKQELEEILHELESRLEEEEERSQQLQNEKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 407 MLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELL 486
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLS 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 487 ALQTKLETLTNQFSD-------SKQHIEVLKESLtakEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQA 559
Cdd:pfam01576 180 KLKNKHEAMISDLEErlkkeekGRQELEKAKRKL---EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEET 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 560 GEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQR 639
Cdd:pfam01576 257 AQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKAL 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 640 DRDEREKQEEIdnyKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ 719
Cdd:pfam01576 337 EEETRSHEAQL---QEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 720 LKkaheaalearaspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESL---TSRQVKDQ 796
Cdd:pfam01576 414 LQ-------------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQlqdTQELLQEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 797 NKKVANLKHK-EQVEKKKSAQM-----LEEARRR-EDNLNDSSQQLQDSLRKKDDR---IEELEEA-------LRESVQI 859
Cdd:pfam01576 481 TRQKLNLSTRlRQLEDERNSLQeqleeEEEAKRNvERQLSTLQAQLSDMKKKLEEDagtLEALEEGkkrlqreLEALTQQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 860 TAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALL 939
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALS 640
|
650 660 670
....*....|....*....|....*....|....
gi 1622843288 940 AAISEKDANIALLELSSSKKKTQEEVAALKREKD 973
Cdd:pfam01576 641 LARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
267-983 |
1.91e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 267 FQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLleMLQSKGLSAKATEEDHERTRRLAEAEMHVHHL 346
Cdd:pfam05483 80 YSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQEL--QFENEKVSLKLEEEIQENKDLIKENNATRHLC 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 347 ESLLE------QKEKENNMLREEMHRRFEN----------APDSAKTKALQTVIEMKdSKISSMERGLRDLEEEIQMLKS 410
Cdd:pfam05483 158 NLLKEtcarsaEKTKKYEYEREETRQVYMDlnnniekmilAFEELRVQAENARLEMH-FKLKEDHEKIQHLEEEYKKEIN 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 411 NGA-------LSTEEREEEMKQMEVYRSHSKfmkNKVEQLKEELSSKEAQWEELKKRAAGLQAEvfaIGQVKQELSRKDT 483
Cdd:pfam05483 237 DKEkqvslllIQITEKENKMKDLTFLLEESR---DKANQLEEKTKLQDENLKELIEKKDHLTKE---LEDIKMSLQRSMS 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 484 ELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE----KETMLNKKTKQIQDMAEEKGTQA 559
Cdd:pfam05483 311 TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEllrtEQQRLEKNEDQLKIITMELQKKS 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 560 GEIHDLKDMLDVKERKVNVLqKKIENLQEQLRDKEKQMSSLKERVKSlqadttntdtalttleealaeKERTIERLKEQR 639
Cdd:pfam05483 391 SELEEMTKFKNNKEVELEEL-KKILAEDEKLLDEKKQFEKIAEELKG---------------------KEQELIFLLQAR 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 640 DRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEE---CLKM 716
Cdd:pfam05483 449 EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDiinCKKQ 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 717 ESQLKKAHEAALEARAspEMSDRIQHLEREITRYKDEsskAQAEVDRLLEILKEVENEKNDKDKKIAELESLTS---RQV 793
Cdd:pfam05483 529 EERMLKQIENLEEKEM--NLRDELESVREEFIQKGDE---VKCKLDKSEENARSIEYEVLKKEKQMKILENKCNnlkKQI 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 794 KDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNdssqQLQDSLRKKDDRIEELEEALRESVQITA-EREMVLAQEES 872
Cdd:pfam05483 604 ENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN----KLELELASAKQKFEEIIDNYQKEIEDKKiSEEKLLEEVEK 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 873 ARTNAEKQVeellmameKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEALLAAISEKDANI 949
Cdd:pfam05483 680 AKAIADEAV--------KLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSelgLYKNKEQEQSSAKAALEIELSNI 751
|
730 740 750
....*....|....*....|....*....|....
gi 1622843288 950 AlLELSSSKKKTQEEvaalKREKDRLVQQLKQQT 983
Cdd:pfam05483 752 K-AELLSLKKQLEIE----KEEKEKLKMEAKENT 780
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
732-989 |
2.25e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 732 ASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLtsrqvKDQNKKVANLKHKEQVEK 811
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL-----EKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 812 KKSAQMLEEARRREDNLNDSSQQLQdSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKV 891
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL----EEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 892 KQELESMKAKLSSTQQSLAEKETHLTNLraERRKHLEEVLEmKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKRE 971
Cdd:PRK03918 337 EERLEELKKKLKELEKRLEELEERHELY--EEAKAKKEELE-RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
|
250
....*....|....*...
gi 1622843288 972 KDRLVQQLKQQTQNRMKL 989
Cdd:PRK03918 414 IGELKKEIKELKKAIEEL 431
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
685-903 |
4.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 685 ASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEAALEARAspEMSDRIQHLEREITRYKDESSKAQAEVDRL 764
Cdd:COG4942 12 ALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLA--ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 765 LEILKEVENEKNDKDKKIAELesLTSRQVKDQNKKVANLKHKEQVEK------------KKSAQMLEEARRREDNLNDSS 832
Cdd:COG4942 89 EKEIAELRAELEAQKEELAEL--LRALYRLGRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 833 QQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 903
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
476-688 |
4.91e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 476 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 555
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 556 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAE 627
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 628 KERTIERLKEQRDRDEREKQEEIDnykkdlkDLKEKVSLLQGDLSEKEASLLDLKEHASSL 688
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALA-------EAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
580-897 |
5.33e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 5.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 580 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLK-EQRDRD-EREKQEEIdnykKDL 657
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEI----AME 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 658 KDLKEKVSLLQGDLSEKEASLLDLKEHAsslassglkkdSRLKTLEIALEQKKEECLKMESQLKKAHEAALEAraspEMS 737
Cdd:pfam17380 374 ISRMRELERLQMERQQKNERVRQELEAA-----------RKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR----EVR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 738 DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKkiaelESLTSRQVKDQNKKVAnlkhkEQVEKKKSAQM 817
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEK-----EKRDRKRAEEQRRKIL-----EKELEERKQAM 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 818 LEEARRREdNLNDSSQQLQDSLRKKDDRiEELEEALRESVQITAER----EMVLAQEESARTNAEKQVEELLMAM---EK 890
Cdd:pfam17380 509 IEEERKRK-LLEKEMEERQKAIYEEERR-REAEEERRKQQEMEERRriqeQMRKATEERSRLEAMEREREMMRQIvesEK 586
|
....*..
gi 1622843288 891 VKQELES 897
Cdd:pfam17380 587 ARAEYEA 593
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
476-942 |
5.70e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 5.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 476 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKEtmLNKKTKQIQDMAEEK 555
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA--LEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 556 GTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR-DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIER 634
Cdd:COG4717 152 EERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 635 LKEQRDRDEREKQeeidnykkdlkdlkekvsllqgdLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECL 714
Cdd:COG4717 232 LENELEAAALEER-----------------------LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 715 KMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESltSRQVK 794
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 795 DQNKKVANLKHKEQVEKKKS-AQMLEEARRREDNLNdssqqlqdslrkkddRIEELEEALREsvqitAEREMVLAQEESA 873
Cdd:COG4717 367 ELEQEIAALLAEAGVEDEEElRAALEQAEEYQELKE---------------ELEELEEQLEE-----LLGELEELLEALD 426
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 874 RTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSL--AEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 942
Cdd:COG4717 427 EEELEEELEELEEELEELEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
562-984 |
5.90e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 47.32 E-value: 5.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 562 IHDLKDMLDVKERKVNV-LQKKIENLQ-EQLRD----KEKQMSSLKERVKS-LQADTTNTDTALTTLEEALAEKERTIEr 634
Cdd:NF033838 71 LSEIQKSLDKRKHTQNVaLNKKLSDIKtEYLYElnvlKEKSEAELTSKTKKeLDAAFEQFKKDTLEPGKKVAEATKKVE- 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 635 lkEQRDRDEREKQEEIDNYKKDLKDLKEkVSLLQGDLSEKEASLLDLKEHASslassGLKKDSRLKTLEIALEQKKEECL 714
Cdd:NF033838 150 --EAEKKAKDQKEEDRRNYPTNTYKTLE-LEIAESDVEVKKAELELVKEEAK-----EPRDEEKIKQAKAKVESKKAEAT 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 715 KMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDES-SKAQAEVDRLLEILKEVENEKNDKDKKIAElESLTSRQV 793
Cdd:NF033838 222 RLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPkRRAKRGVLGEPATPDKKENDAKSSDSSVGE-ETLPSPSL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 794 KDQnKKVANLKHKEQVEKKKSAQMLEEARRREDNlndssqqlqdslrkkdDRIEELEEALRESVQITAEREMVLAQEESA 873
Cdd:NF033838 301 KPE-KKVAEAEKKVEEAKKKAKDQKEEDRRNYPT----------------NTYKTLELEIAESDVKVKEAELELVKEEAK 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 874 RTNAEKQVeellmamEKVKQELESMKA---KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA------LLAAISE 944
Cdd:NF033838 364 EPRNEEKI-------KQAKAKVESKKAeatRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPApapqpeKPAPKPE 436
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1622843288 945 KDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQ 984
Cdd:NF033838 437 KPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTE 476
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
425-608 |
8.28e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 8.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 425 QMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKR------AAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQ 498
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 499 FSDSKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI-HDLKDMLDVKERK 575
Cdd:COG3206 249 LGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlASLEAELEALQAR 328
|
170 180 190
....*....|....*....|....*....|...
gi 1622843288 576 VNVLQKKIEnlqeQLRDKEKQMSSLKERVKSLQ 608
Cdd:COG3206 329 EASLQAQLA----QLEARLAELPELEAELRRLE 357
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
160-859 |
9.96e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 9.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 160 EVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKitiwkeqyrvvqeENQHMQMTIQALQDElriq 239
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK-------------KAEEAKKKADAAKKK---- 1337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 240 rdlnqlfqqdsssrtgepcvAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQtlnaRDESIKKLLEMLQSK 319
Cdd:PTZ00121 1338 --------------------AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK----KADAAKKKAEEKKKA 1393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 320 GLSAKATEEDHERTRRLAEAEMhvhhlesllEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLR 399
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAA---------AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 400 DLEEeiqmlkSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEElsskeaqwEELKKRAAGLQaevfaigqvKQELS 479
Cdd:PTZ00121 1465 KAEE------AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA--------AEAKKKADEAK---------KAEEA 1521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 480 RKDTELLALQTKLETLTNQFSDSKQHIEVLKEsltAKEQRAAILQTEVDALRlRLEEKETMLNKKTKQIQDMAEEKGTQA 559
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKK---AEELKKAEEKKKAEEAK-KAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 560 GEIHDLKDMLDVKERKVnvlqkkienlQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQR 639
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKK----------AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 640 DRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEhasslaSSGLKKDSRLKTLEIALEQKKEECLKMESQ 719
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKE------AEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 720 LKKAHEaalEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRlLEILKEVENEKNDKDKKIAELESlTSRQVKDQNKK 799
Cdd:PTZ00121 1742 DKKKAE---EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE-EELDEEDEKRRMEVDKKIKDIFD-NFANIIEGGKE 1816
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622843288 800 ----VANLKHKEQVEKKK----------SAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQI 859
Cdd:PTZ00121 1817 gnlvINDSKEMEDSAIKEvadsknmqleEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEI 1890
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
344-909 |
1.43e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 344 HHLESLLEQKEKENNMLREEMHR--RFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREE 421
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQinDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTS 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 422 EMKQMEVYRSHSKFM-KNKVEQLKEELSSKEAQWEELKKRAAGLQAevfaIGQVKQELSRKDTELLALQTKLETLTNQFS 500
Cdd:TIGR01612 1209 LEEVKGINLSYGKNLgKLFLEKIDEEKKKSEHMIKAMEAYIEDLDE----IKEKSPEIENEMGIEMDIKAEMETFNISHD 1284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 501 DSKQHievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH---------------- 563
Cdd:TIGR01612 1285 DDKDH------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneianiynilkln 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 564 DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALAEKE--RTIERLKEQRDR 641
Cdd:TIGR01612 1359 KIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIKKIKELKNH 1430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 642 DEREkQEEIDNYKKDLKDLKEKVSLLQGDL-------------------SEKEASLLDLKEHASSLASSGLKKDSRLKTL 702
Cdd:TIGR01612 1431 ILSE-ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDEADKNAKAI 1509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 703 E---IALEQKKEECLKMesqLKKAHEAALEARASPEMSDRiqhlEREITRYKDESSKAQAEVDRLLEILKEVENEK---- 775
Cdd:TIGR01612 1510 EknkELFEQYKKDVTEL---LNKYSALAIKNKFAKTKKDS----EIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKfrie 1582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 776 -----NDKDKKIA-----ELESLTSRQVKDQN-KKVAN--LKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKK 842
Cdd:TIGR01612 1583 ddaakNDKSNKAAidiqlSLENFENKFLKISDiKKKINdcLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESL 1662
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622843288 843 DDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV-KQELESMKAKLSSTQQSL 909
Cdd:TIGR01612 1663 KDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
743-945 |
1.70e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 743 LEREITRYKDESSKAQAEVDRL-LEILKEVENEKNDKDKKIAELESLTsRQVKDQNKKVANLKhKEQVEKKKSAQMLEEA 821
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELnLKELKELEEELKEAEEKEEEYAELQ-EELEELEEELEELE-AELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 822 RRREDNLNDSsQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEkvkQELESMKAK 901
Cdd:COG4717 125 LQLLPLYQEL-EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEE 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1622843288 902 LSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK 945
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
446-909 |
1.95e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 446 ELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQraailqt 525
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMD------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 526 EVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIE----------NLQEQLRDKEK 595
Cdd:PRK01156 233 DYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYknrnyindyfKYKNDIENKKQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 596 QMSSLKERVKSLQADTTNTDTALTTLEEALaEKERTIERLKEQRD-------------RDEREKQEEIDNYKKDLKDLKE 662
Cdd:PRK01156 313 ILSNIDAEINKYHAIIKKLSVLQKDYNDYI-KKKSRYDDLNNQILelegyemdynsylKSIESLKKKIEEYSKNIERMSA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 663 KVSLLQGDL--------SEKEASLLDLKEHASSLASSGLKKDSRLKTLE-----IALEQKKEECLKMESQLKKAHEAALE 729
Cdd:PRK01156 392 FISEILKIQeidpdaikKELNEINVKLQDISSKVSSLNQRIRALRENLDelsrnMEMLNGQSVCPVCGTTLGEEKSNHII 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 730 ARASPEMS---DRIQHLEREITRYKDESSKAQAEVDRLL-EILKEVENEKNDKDKKIAELESLtsrQVKDQNKKVANLKH 805
Cdd:PRK01156 472 NHYNEKKSrleEKIREIEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADLEDI---KIKINELKDKHDKY 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 806 KEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELL 885
Cdd:PRK01156 549 EEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEA 628
|
490 500
....*....|....*....|....
gi 1622843288 886 MAMEKVKQELESMKAKLSSTQQSL 909
Cdd:PRK01156 629 NNLNNKYNEIQENKILIEKLRGKI 652
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
470-811 |
2.03e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 470 AIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ 549
Cdd:COG4372 25 LIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 550 DMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKE 629
Cdd:COG4372 105 SLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 630 rTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQK 709
Cdd:COG4372 185 -LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEEL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 710 KEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLT 789
Cdd:COG4372 264 ELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLL 343
|
330 340
....*....|....*....|..
gi 1622843288 790 SRQVKDQNKKVANLKHKEQVEK 811
Cdd:COG4372 344 QLLLVGLLDNDVLELLSKGAEA 365
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
280-916 |
2.35e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 280 ELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEML--QSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKEN 357
Cdd:pfam12128 259 RLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLddQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 358 nmlREEMHRRFENAPdsaktkALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALS------------TEEREEEMKQ 425
Cdd:pfam12128 339 ---IETAAADQEQLP------SWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnnrdiagikdklAKIREARDRQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 426 MEVYRSH----SKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSD 501
Cdd:pfam12128 410 LAVAEDDlqalESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVER 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 502 SKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKT--------KQIQDMAEEKGT---------------- 557
Cdd:pfam12128 490 LQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAgtllhflrKEAPDWEQSIGKvispellhrtdldpev 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 558 ------------------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTalt 619
Cdd:pfam12128 570 wdgsvggelnlygvkldlKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFART--- 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 620 tleeALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVsllqgdlsEKEASLLDLKEHASSLASSGLKKDSRL 699
Cdd:pfam12128 647 ----ALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL--------EAQLKQLDKKHQAWLEEQKEQKREART 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 700 KTLEIALEQKKEeclkmesqlKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVEN-EKNDK 778
Cdd:pfam12128 715 EKQAYWQVVEGA---------LDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTlERKIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 779 DKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQ---------MLEEARRREDNLNDSSqqlqDSLRKKDDRIEEL 849
Cdd:pfam12128 786 RIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAIselqqqlarLIADTKLRRAKLEMER----KASEKQQVRLSEN 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 850 EEALRESVQITAEREMVLAQEESARTNAEK--QVEELLM----AMEKVKQELESMK--------AKLSSTQQSLAEKETH 915
Cdd:pfam12128 862 LRGLRCEMSKLATLKEDANSEQAQGSIGERlaQLEDLKLkrdyLSESVKKYVEHFKnviadhsgSGLAETWESLREEDHY 941
|
.
gi 1622843288 916 L 916
Cdd:pfam12128 942 Q 942
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
738-988 |
2.80e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 44.68 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 738 DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENekndkdkkiaelesltsrqvkdqnkkvANLKHKEQVEkkksaqm 817
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEA---------------------------AALQPGEEEE------- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 818 LEEARRREDNlndsSQQLQDSLRKKDDRIEELEEALRESVQiTAEREMV-LAQEESARTNAEKQVEELLMAMEKVKQELE 896
Cdd:COG0497 211 LEEERRRLSN----AEKLREALQEALEALSGGEGGALDLLG-QALRALErLAEYDPSLAELAERLESALIELEEAASELR 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 897 SMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKRE 971
Cdd:COG0497 286 RYLDSLEFDPERLEEVEERLALLRRLARKYgvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAE 356
|
250
....*....|....*..
gi 1622843288 972 KDRLVQQLkqqTQNRMK 988
Cdd:COG0497 357 LLEAAEKL---SAARKK 370
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
219-988 |
3.12e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 219 QEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPC-VAELTEENFQRLHAEHERQAKELfllrktlEEMELRIET 297
Cdd:TIGR00606 254 LKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEkVFQGTDEQLNDLYHNHQRTVREK-------ERELVDCQR 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 298 QKQTLNArdesikkllemlQSKGLSAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEMHRrFENAPDSakT 377
Cdd:TIGR00606 327 ELEKLNK------------ERRLLNQEKTELLVEQGRLQLQAD--RHQEHIRARDSLIQSLATRLELDG-FERGPFS--E 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 378 KALQTVIEMKdskissmergLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEEL 457
Cdd:TIGR00606 390 RQIKNFHTLV----------IERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 458 KKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKleTLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 537
Cdd:TIGR00606 460 IKELQQLEGSSDRILELDQELRKAERELSKAEKN--SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQM 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 538 ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVK---ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 614
Cdd:TIGR00606 538 EMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESK 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 615 DTALTTLEEALAE------KERTIERLKEQRDRDERE------KQEEIDNYKKDLKDLKEKVSLLQGDLSEKEAsllDLK 682
Cdd:TIGR00606 618 EEQLSSYEDKLFDvcgsqdEESDLERLKEEIEKSSKQramlagATAVYSQFITQLTDENQSCCPVCQRVFQTEA---ELQ 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 683 EHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLK-KAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAE- 760
Cdd:TIGR00606 695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPgRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLl 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 761 -------------------VDRLLEILKEVE--------------------------NEKNDKDKKIAELESLTSRQVKD 795
Cdd:TIGR00606 775 gtimpeeesakvcltdvtiMERFQMELKDVErkiaqqaaklqgsdldrtvqqvnqekQEKQHELDTVVSKIELNRKLIQD 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 796 QNKKVANLKHKEQVEKKKSAQMLEEARRR---EDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEES 872
Cdd:TIGR00606 855 QQEQIQHLKSKTNELKSEKLQIGTNLQRRqqfEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 873 ARTNAEKQVEellMAMEKVKQELESMKAKLSSTQQS----LAEKETHLTNLRA--ERRKHLEEVLEMKQEALLAAISEKD 946
Cdd:TIGR00606 935 SNKKAQDKVN---DIKEKVKNIHGYMKDIENKIQDGkddyLKQKETELNTVNAqlEECEKHQEKINEDMRLMRQDIDTQK 1011
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 1622843288 947 ANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMK 988
Cdd:TIGR00606 1012 IQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMK 1053
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
471-795 |
3.14e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.51 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 471 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD 550
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 551 MAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALAEKER 630
Cdd:COG4372 127 LEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEEELAE 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 631 TIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKK 710
Cdd:COG4372 205 AEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALE 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 711 EECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTS 790
Cdd:COG4372 285 LEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAE 364
|
....*
gi 1622843288 791 RQVKD 795
Cdd:COG4372 365 AGVAD 369
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
272-645 |
3.95e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEMHVHHLES 348
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqeLEALEAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 349 LLEQKEKENNMLrEEMHRRFENAPDSAKTKALQTVIEMKDsKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEV 428
Cdd:COG4717 161 LEEELEELEAEL-AELQEELEELLEQLSLATEEELQDLAE-ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 429 YRSHSKFMKNK-----------VEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTN 497
Cdd:COG4717 239 AALEERLKEARlllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 498 Q----------FSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ----DMAEEKGTQAGEIH 563
Cdd:COG4717 319 EeleellaalgLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGvedeEELRAALEQAEEYQ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 564 DLKDMLDVKERKVN----------------VLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntDTALTTLEEALAE 627
Cdd:COG4717 399 ELKEELEELEEQLEellgeleellealdeeELEEELEELEEELEELEEELEELREELAELEA-----ELEQLEEDGELAE 473
|
410
....*....|....*...
gi 1622843288 628 KERTIERLKEQRDRDERE 645
Cdd:COG4717 474 LLQELEELKAELRELAEE 491
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
723-988 |
4.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 723 AHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVAN 802
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 803 LKHKEQVEKKKSAQMLEEARRREDnlndssQQLQDSLRKKDDrIEELEEALREsvqitaerEMVLAQEESARTNAEKQVE 882
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEE------VRKAEELRKAED-ARKAEAARKA--------EEERKAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 883 ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANiallELSSSKKKTQ 962
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD----EAKKAEEKKK 1303
|
250 260
....*....|....*....|....*.
gi 1622843288 963 EEVAALKREKDRLVQQLKQQTQNRMK 988
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKK 1329
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
573-855 |
5.04e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 573 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL--AEKERTIERLKEQRDRDEREKQEei 650
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDD-- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 651 dnykkdlkdlkekVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEA 730
Cdd:COG4913 687 -------------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 731 RASPEMSDRI-----QHLEREITRYKDESSKAQAEVDRLL-EILKEVENEKNDKDKKIAELESLtsRQVKDQNKKVANLK 804
Cdd:COG4913 754 RFAAALGDAVerelrENLEERIDALRARLNRAEEELERAMrAFNREWPAETADLDADLESLPEY--LALLDRLEEDGLPE 831
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 805 HKEQVEKKKSAQMleearrrEDNLNDSSQQLQDSLRKKDDRIEELEEALRE 855
Cdd:COG4913 832 YEERFKELLNENS-------IEFVADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
192-841 |
5.18e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 192 PELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQdsssrtgepcvaelteENFQRLH 271
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ----------------EIHIRDA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglsaKATEEDHERTRRLAEAEMHVHHLESLLE 351
Cdd:TIGR00618 361 HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE----QATIDTRTSAFRDLQGQLAHAKKQQELQ 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 352 QKEKENNMLREEMHRRFENAPDSAKTKALQtviemkdskissmerglrdleeeiqmlksngalSTEEREEEMKQMEVYRS 431
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQ---------------------------------SLKEREQQLQTKEQIHL 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 432 HSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKE 511
Cdd:TIGR00618 484 QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 512 SLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMldvkerkvnvLQKKIENLQEQLR 591
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK----------LQPEQDLQDVRLH 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 592 DKEKQMSslkERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDL 671
Cdd:TIGR00618 634 LQQCSQE---LALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 672 SEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMS-DRIQHLEREITRY 750
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTgAELSHLAAEIQFF 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 751 KdessKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLND 830
Cdd:TIGR00618 791 N----RLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQ 866
|
650
....*....|.
gi 1622843288 831 SSQQLQDSLRK 841
Cdd:TIGR00618 867 EQAKIIQLSDK 877
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
209-421 |
5.21e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 209 TIWKEQYRVVQEENQHMQMTIQALQDELRIQRDlnqlFQQDSSSRTGEPcVAELTE------ENFQRLHAEHERQAKELF 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGEN-IARKQNkydelvEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 283 LLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNM 359
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622843288 360 LREEMHRRFENapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREE 421
Cdd:PHA02562 325 LEEIMDEFNEQ---SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
375-609 |
5.83e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKS-NGALSTEEREE-EMKQMEVYRShskfmknKVEQLKEELSSKEA 452
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDLSEEAKlLLQQLSELES-------QLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 453 QWEELKKRAAGLQAEVFAIGQvKQELSRKDTELLALQTKLETLTNQFSDS-------KQHIEVLKESLTAKEQRAAI-LQ 524
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQRILAsLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 525 TEVDALRLRLEEKETMLNKKTKQIQDMAEekgtqageihdlkdmldvkerkvnvLQKKIENLQEQLRDKEKQMSSLKERV 604
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELPE-------------------------LEAELRRLEREVEVARELYESLLQRL 374
|
....*
gi 1622843288 605 KSLQA 609
Cdd:COG3206 375 EEARL 379
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
825-995 |
6.35e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 825 EDNLNDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLmamekvkQELESMKAKLSS 904
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-----AEAALEEFRQKNGLVDLSEEAKLLL-------QQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 905 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 982
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE 310
|
170
....*....|...
gi 1622843288 983 TQNRMKLMADNYE 995
Cdd:COG3206 311 AQRILASLEAELE 323
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-629 |
6.51e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 6.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 436 MKNKVEQLKEELSSKEAQWEELKKRAAGLQAEvfaIGQVKQELSRKDTELLALQTKLETLTNQFSD----------SKQH 505
Cdd:COG3883 28 LQAELEAAQAELDALQAELEELNEEYNELQAE---LEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 506 IEVLKESLTAKE--QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKI 583
Cdd:COG3883 105 LDVLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALL 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1622843288 584 ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKE 629
Cdd:COG3883 185 AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
581-981 |
6.65e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 6.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 581 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAlttlEEALAEKERTIERLKEQRDRDEREKQeeidnykkdLKDL 660
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL----EEELEELEAELEELREELEKLEKLLQ---------LLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 661 KEKVSLLQGDLSEKEASLLDLKEHASSLASsglkKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEaraspEMSDRI 740
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQ-----DLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 741 QHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKK---------------IAELESLTSRQ------------- 792
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaaLLALLGLGGSLlsliltiagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 793 ---------VKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE--DNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITA 861
Cdd:COG4717 282 vlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 862 EREMVLAQEESARTNAEKQVEELLMAMEKVKQelesmkaklsstQQSLAEKETHLTNLRAERRKHLEEVlemkqEALLAA 941
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQ------------AEEYQELKEELEELEEQLEELLGEL-----EELLEA 424
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1622843288 942 ISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 981
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
459-768 |
6.85e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 6.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 459 KRAAGLQAEVFAIgqvKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESL----TAKEQRAAI--LQTEVDALRL 532
Cdd:PRK04863 286 EEALELRRELYTS---RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLnlvqTALRQQEKIerYQADLEELEE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 533 RLEEKEtMLNKKTKQIQDMAEEKGTQA--------GEIHDLKDMLDVKERK-------VNVLQK-------------KIE 584
Cdd:PRK04863 363 RLEEQN-EVVEEADEQQEENEARAEAAeeevdelkSQLADYQQALDVQQTRaiqyqqaVQALERakqlcglpdltadNAE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 585 NLQEQLRDKEKQmssLKERVKSLQADTTNTDTALTTLEEALA-------------------EKERTIERLK--------- 636
Cdd:PRK04863 442 DWLEEFQAKEQE---ATEELLSLEQKLSVAQAAHSQFEQAYQlvrkiagevsrseawdvarELLRRLREQRhlaeqlqql 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 637 -------EQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEI---AL 706
Cdd:PRK04863 519 rmrlselEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAriqRL 598
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622843288 707 EQKKEECLKMESQLKKAHEAALEARASPEMSDR-IQHL---EREITRYKDESSKAQAEVDRLLEIL 768
Cdd:PRK04863 599 AARAPAWLAAQDALARLREQSGEEFEDSQDVTEyMQQLlerERELTVERDELAARKQALDEEIERL 664
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
721-910 |
9.99e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 9.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 721 KKAHEAALEARaspemsDRIQHLEREITRYKDES-SKAQAEVDRLLEilkEVENEKNDKDKKIAELESLTSRQVKDQNKK 799
Cdd:PRK12704 31 AKIKEAEEEAK------RILEEAKKEAEAIKKEAlLEAKEEIHKLRN---EFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 800 VANLKHKEQ-VEKKKsaqmlEEARRREDNLNDSSQQLQdslRKKDDRIEELEEAlresVQITAE--REMVLAQ-EESART 875
Cdd:PRK12704 102 LELLEKREEeLEKKE-----KELEQKQQELEKKEEELE---ELIEEQLQELERI----SGLTAEeaKEILLEKvEEEARH 169
|
170 180 190
....*....|....*....|....*....|....*..
gi 1622843288 876 NAEKQVEEllmAMEKVKQELEsMKAK--LSSTQQSLA 910
Cdd:PRK12704 170 EAAVLIKE---IEEEAKEEAD-KKAKeiLAQAIQRCA 202
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
567-801 |
1.09e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 567 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDERek 646
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 647 qeeiDNYKKDLKDLKEKVSLLQGDLSEkeasLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 726
Cdd:COG3883 94 ----ALYRSGGSVSYLDVLLGSESFSD----FLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622843288 727 ALEARAspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVA 801
Cdd:COG3883 166 LEAAKA--ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-538 |
1.34e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 277 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQskglsaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA------ALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 357 NNMLREEMHRRFENapdsaktkalqtviemkdskissMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFM 436
Cdd:COG4942 92 IAELRAELEAQKEE-----------------------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 437 KNKVEQLKEELsskeaqwEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFsdsKQHIEVLKESLTAK 516
Cdd:COG4942 149 REQAEELRADL-------AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL---EKELAELAAELAEL 218
|
250 260
....*....|....*....|..
gi 1622843288 517 EQRAAILQTEVDALRLRLEEKE 538
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAA 240
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
391-582 |
1.47e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 42.11 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 391 ISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKF------MKNKVEQLKEELSSKEAQWEELKKRAAGL 464
Cdd:pfam15905 124 VASLEKQLLELTRVNELLKAKFSEDGTQKKMSSLSMELMKLRNKLeakmkeVMAKQEGMEGKLQVTQKNLEHSKGKVAQL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 465 QAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKK 544
Cdd:pfam15905 204 EEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEK 283
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1622843288 545 TKQIQDMAEEKGTQA--------GEIHDLKDMLDVKERKVNVLQKK 582
Cdd:pfam15905 284 CKLLESEKEELLREYeekeqtlnAELEELKEKLTLEEQEHQKLQQK 329
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
674-945 |
1.54e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 674 KEASLLDLKEHASS----LASSGL-------KKDSRLKTLEiaLEQKKEECLKMESQLKKAHEAaLEARASPEMSDRIQH 742
Cdd:PRK05771 7 KKVLIVTLKSYKDEvleaLHELGVvhiedlkEELSNERLRK--LRSLLTKLSEALDKLRSYLPK-LNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 743 LEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK-------VANLKHKEQVEKKKSA 815
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLgfkyvsvFVGTVPEDKLEELKLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 816 QMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQItaeremvlaqeesartNAEKQVEELLmamEKVKQEL 895
Cdd:PRK05771 164 SDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLEL----------------EEEGTPSELI---REIKEEL 224
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 896 ESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEALL-AAISEK 945
Cdd:PRK05771 225 EEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
716-953 |
1.55e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 716 MESQLKKAHEAALEARAS-----PEMSDRIQHLEREITRYKDESS--KAQAEVDRLLEILKEVENEKNDKDKKIAELESL 788
Cdd:COG3206 162 LEQNLELRREEARKALEFleeqlPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 789 tSRQVKDQNKKVANlkhkeQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRE-SVQITAEREMVL 867
Cdd:COG3206 242 -LAALRAQLGSGPD-----ALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAAlRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 868 AQEESARTNAEKQVEELlmamekvKQELESMKAKLsstqQSLAEKETHLTNLRAER---RKHLEEVLEMKQEALLAAiSE 944
Cdd:COG3206 316 ASLEAELEALQAREASL-------QAQLAQLEARL----AELPELEAELRRLEREVevaRELYESLLQRLEEARLAE-AL 383
|
....*....
gi 1622843288 945 KDANIALLE 953
Cdd:COG3206 384 TVGNVRVID 392
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
535-653 |
1.56e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 535 EEKETMLNKKTKQIQDMAEEKGTQAG-EIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 613
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKeEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1622843288 614 TDTALTTLEEALAEKERTIERLKEQrdrdEREKQEEIDNY 653
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEE----QLQELERISGL 150
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
739-893 |
1.70e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 739 RIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESL-----TSRQVKDQNKKVANLKHKEQVEKKK 813
Cdd:COG1579 32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrNNKEYEALQKEIESLKRRISDLEDE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 814 SAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEkqvEELLMAMEKVKQ 893
Cdd:COG1579 112 ILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE---LEAELEELEAEREELAAKIP---PELLALYERIRK 185
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
306-523 |
2.80e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 306 DESIKKLLEMLQSKGLS---AKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEM----HRRFENAPDSAKTK 378
Cdd:PRK05771 15 KSYKDEVLEALHELGVVhieDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKkkvsVKSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 379 ALQTVIEMKD--SKISSMERGLRDLEEEIQMLKSNGALSTE---EREEEMKQMEVYRSHskfmKNKVEQLKEELSSKEA- 452
Cdd:PRK05771 95 LEKIEKEIKEleEEISELENEIKELEQEIERLEPWGNFDLDlslLLGFKYVSVFVGTVP----EDKLEELKLESDVENVe 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 453 ----------------------QWEELKKraAGLQA-EVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQH---- 505
Cdd:PRK05771 171 yistdkgyvyvvvvvlkelsdeVEEELKK--LGFERlELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKylee 248
|
250
....*....|....*...
gi 1622843288 506 IEVLKESLTAKEQRAAIL 523
Cdd:PRK05771 249 LLALYEYLEIELERAEAL 266
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
706-991 |
3.12e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 706 LEQKKEECLK-MESQLK-----KAHEAALEARAS--PEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVEneknd 777
Cdd:pfam17380 301 LRQEKEEKAReVERRRKleeaeKARQAEMDRQAAiyAEQERMAMERERELERIRQEERKRELERIRQEEIAMEIS----- 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 778 kdkKIAELESLT-SRQVKDQNKKV---ANLKHK---EQVEKKKSAQMLEEARRREDNLNDSSQQLQdslRKKDDRIEELE 850
Cdd:pfam17380 376 ---RMRELERLQmERQQKNERVRQeleAARKVKileEERQRKIQQQKVEMEQIRAEQEEARQREVR---RLEEERAREME 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 851 EALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKEthltnlraERRKHLEEV 930
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEE--------RKRKLLEKE 521
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622843288 931 LEMKQEALLAAISEKDAniallelsSSKKKTQEEVaalkREKDRLVQQLKQQTQNRMKLMA 991
Cdd:pfam17380 522 MEERQKAIYEEERRREA--------EEERRKQQEM----EERRRIQEQMRKATEERSRLEA 570
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
596-845 |
3.60e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 596 QMSSL-KERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEK 674
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 675 EASLLDLKEHASSLASSGLKKDSRLKTL--EIALEQKKEECLKMESQLKKAHEAALEARaspemsDRIQHLEREITRYKD 752
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPTCTQQISEGPDRITKIK------DKLKELQHSLEKLDT 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 753 ESSKAQAEVDRLLEILKEVENEKNDKDKKIAELeSLTSRQVKDQNKKVANLKhKEQVEKKksaqmlEEARRREDNLNDSS 832
Cdd:PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSL-ITLVDKAKKVKAAIEELQ-AEFVDNA------EELAKLQDELDKIV 392
|
250
....*....|...
gi 1622843288 833 QQLQDSLRKKDDR 845
Cdd:PHA02562 393 KTKSELVKEKYHR 405
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
392-645 |
3.65e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 392 SSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAI 471
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 472 GQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKetmlnkktkqIQDM 551
Cdd:pfam07888 114 SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK----------LQQT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 552 AEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL---RDKEKQMSSLKERVKSLQadttntdtalttleEALAEK 628
Cdd:pfam07888 184 EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLttaHRKEAENEALLEELRSLQ--------------ERLNAS 249
|
250 260
....*....|....*....|....
gi 1622843288 629 ERTIERLKE-------QRDRDERE 645
Cdd:pfam07888 250 ERKVEGLGEelssmaaQRDRTQAE 273
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
810-982 |
3.95e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 810 EKKKSAQMLEEARRREDNLNDSSQQLQDsLRKKDDRIEELEEaLRESVQITAEREMVLAQEESART--NAEKQVEELLMA 887
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALED-AREQIELLEPIRE-LAERYAAARERLAELEYLRAALRlwFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 888 MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEALLAAISEKDANIALLE-----LSSSKK 959
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdRLEQLEREIERLERELEERERRRARLEallaaLGLPLP 376
|
170 180
....*....|....*....|...
gi 1622843288 960 KTQEEVAALKREKDRLVQQLKQQ 982
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEE 399
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
260-863 |
4.27e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.28 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 260 AELTEENFQRLhaehERQAKELFLLRKTLEEMELRIETQKQTLNARdesikkllemlqskGLSAKATEEDHERTRR-LAE 338
Cdd:pfam07111 65 AELISRQLQEL----RRLEEEVRLLRETSLQQKMRLEAQAMELDAL--------------AVAEKAGQAEAEGLRAaLAG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 339 AEMHVHHLESLLEQKEKENNMLREE----MHRRFENAPDSAKTKA--LQTVIEMKDSKISSMERGLRDLEEEIQMLKSNG 412
Cdd:pfam07111 127 AEMVRKNLEEGSQRELEEIQRLHQEqlssLTQAHEEALSSLTSKAegLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 413 ALSTEEREEEMKQMEVYRSHSKfmknkvEQLKEELSSKEAQWEE---------LKKRAAGLQAEVFAIGQVKQELsrkdT 483
Cdd:pfam07111 207 SKTQEELEAQVTLVESLRKYVG------EQVPPEVHSQTWELERqelldtmqhLQEDRADLQATVELLQVRVQSL----T 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 484 ELLALQTKLETLTNQFSDS--KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD----MAEEKGT 557
Cdd:pfam07111 277 HMLALQEEELTRKIQPSDSlePEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEqvtsQSQEQAI 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 558 QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLqadTTNTDTALTTLEEALAEKERTIERLKE 637
Cdd:pfam07111 357 LQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFV---VNAMSSTQIWLETTMTRVEQAVARIPS 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 638 QRDRderekqeeidnykkdLKDLKEKVSLLQGdLSEKEASLLDLKEHASSLASSGLKKDSrlkTLEIALEQKKEECLKME 717
Cdd:pfam07111 434 LSNR---------------LSYAVRKVHTIKG-LMARKVALAQLRQESCPPPPPAPPVDA---DLSLELEQLREERNRLD 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 718 SQLK-KAHEAALEARASPE--------MSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESL 788
Cdd:pfam07111 495 AELQlSAHLIQQEVGRAREqgeaerqqLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEI 574
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622843288 789 TSRQVKDqnkKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEEL----EEALRESVQITAER 863
Cdd:pfam07111 575 YGQALQE---KVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELrrlqDEARKEEGQRLARR 650
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
779-944 |
4.43e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 779 DKKIAELEsltsRQVKDQNKKVANLKHkeqvEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEAL----- 853
Cdd:COG1579 16 DSELDRLE----HRLKELPAELAELED----ELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 854 -RESVQITAEremvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLE 932
Cdd:COG1579 88 nKEYEALQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
170
....*....|..
gi 1622843288 933 mKQEALLAAISE 944
Cdd:COG1579 164 -EREELAAKIPP 174
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
506-646 |
5.34e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 506 IEVLKESLTAKEQRAAILQTEVDALRLRLEEKEtmLNKKTKQIQDMAEEKGtqageihDLKDMLDVKERKVNVLQKKIEN 585
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEE--IRRLEEQVERLEAEVE-------ELEAELEEKDERIERLERELSE 452
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622843288 586 LQEQLRD---KEKQMSSLKERVKSLQadttntdTALTTLEEALAEKERTIERLKEQRDRDEREK 646
Cdd:COG2433 453 ARSEERReirKDREISRLDREIERLE-------RELEEERERIEELKRKLERLKELWKLEHSGE 509
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
268-981 |
5.35e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 268 QRLHAEHERQAKELFLLRKTLEEMELRIETQK-QTLNARDESIKKL-LEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 345
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 346 LESLLEQKEKENNMLREEMhrrFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNgalsteereeemkq 425
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQN-------------- 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 426 mevyrshskfmKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFAIGQVKQEL--SRKDTELLALQTKL--ETLTNQFSD 501
Cdd:TIGR00606 607 -----------KNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIekSSKQRAMLAGATAVysQFITQLTDE 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 502 SKQHIEVLKESLTAKEQRAAILQTEVDALRL---RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNV 578
Cdd:TIGR00606 676 NQSCCPVCQRVFQTEAELQEFISDLQSKLRLapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQK 755
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 579 LQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEaLAEKERTIERLKEQR-----DRDEREKQEEIDNY 653
Cdd:TIGR00606 756 VNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQME-LKDVERKIAQQAAKLqgsdlDRTVQQVNQEKQEK 834
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 654 KKDLKDLKEKVSLLQGDLSEKEASLLDLKEhasslassglkKDSRLKTLEIALEQKKEECLKMESQLKkaheaalearas 733
Cdd:TIGR00606 835 QHELDTVVSKIELNRKLIQDQQEQIQHLKS-----------KTNELKSEKLQIGTNLQRRQQFEEQLV------------ 891
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 734 pEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDkDKKIAELEsltsrqVKDQNKKVANLK-HKEQVEKK 812
Cdd:TIGR00606 892 -ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET-SNKKAQDK------VNDIKEKVKNIHgYMKDIENK 963
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 813 KSAQMLEEARRREDNLNDSSQQLQDSlRKKDDRIEELEEALRESVQITAEREMVLAQeesartnaekqveellmamekvk 892
Cdd:TIGR00606 964 IQDGKDDYLKQKETELNTVNAQLEEC-EKHQEKINEDMRLMRQDIDTQKIQERWLQD----------------------- 1019
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 893 qelesmkaklsstQQSLAEKETHLTNLRAERRKHLEEVLEMKqeallaaisekdaniaLLELSSSKKKTQEEVAALKREK 972
Cdd:TIGR00606 1020 -------------NLTLRKRENELKEVEEELKQHLKEMGQMQ----------------VLQMKQEHQKLEENIDLIKRNH 1070
|
....*....
gi 1622843288 973 DRLVQQLKQ 981
Cdd:TIGR00606 1071 VLALGRQKG 1079
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
785-900 |
5.71e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 785 LESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEAL-----RESVQI 859
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELsearsEERREI 461
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1622843288 860 TAEREMVLAQEESARTnaEKQVEELLMAMEKVKQELESMKA 900
Cdd:COG2433 462 RKDREISRLDREIERL--ERELEEERERIEELKRKLERLKE 500
|
|
| COG4646 |
COG4646 |
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair]; |
361-955 |
6.54e-03 |
|
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair];
Pssm-ID: 443684 [Multi-domain] Cd Length: 1711 Bit Score: 40.62 E-value: 6.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 361 REEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKV 440
Cdd:COG4646 968 DFEKGTRLVFCADIATGDYDAVIIGHIQFEKIPASGERQEEILEEQIAEILKAIKELKAVVRKRFTVKQLESTKKLGAGK 1047
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 441 EQLKEELSSK--EAQWEELKKRAAGLQAEVFAIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQ 518
Cdd:COG4646 1048 LKQLDLLALKdlDVPWEPLDVDQLFGRGSRQGNNNFLVTKMRNVAGLAFSDAAKLSDYFGKQRYRDELTAGKGVVVATGT 1127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 519 RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMS 598
Cdd:COG4646 1128 DESNLMYELYTAQAYLQLLLLGKQGLTNFDTWASTLEELVTAAELAPERTAYRANTREAKAVNLPEEDVMIKEAEDAKTA 1207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 599 SLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLqgdLSEKEASL 678
Cdd:COG4646 1208 DELLLPTPEKISGGVATKPSEVQKELLEELEERAAIVRKNDGEPDRDNMLVITDDGRKAALDQRLDIKT---LPDDEGSL 1284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 679 LDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKaheAALEARASPEMSDRIQHLEREITRYKDE---SS 755
Cdd:COG4646 1285 VALCVTNIDRIWEDNPESKLTQLVFCDLSTPKGDGTFNDLEDIR---EKLIEEEIAELEIAFIHLALDDQEKAELfarDR 1361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 756 KAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQL 835
Cdd:COG4646 1362 LGAVEKLRISTAKMGAGTNVRLLLEATHDLDVPWRPRDAEQRAGRGRRQGNENEEVEEIRYVTENTFDAYLWQAAETKQK 1441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 836 QDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL-------LMAMEKVKQELESMKAKLSSTQQS 908
Cdd:COG4646 1442 FIAQIMTSKSPVRSLEDVDEAALSYAERKALAAGRPKEKEKMDLDIEVLklklldaAALEQLYAEEDKLRKSYLDEEEAL 1521
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1622843288 909 LAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELS 955
Cdd:COG4646 1522 EERIEAATKDLRLARAASQEEADEQESASKEAAAGEKKAAAAELLAA 1568
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
391-534 |
7.22e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 7.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 391 ISSMERGLRDLEEEIQMLksNGALSTEereeemkqmevyRSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAGLQAEVFA 470
Cdd:PRK09039 48 ISGKDSALDRLNSQIAEL--ADLLSLE------------RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA 113
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622843288 471 ----IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 534
Cdd:PRK09039 114 aegrAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
739-887 |
7.32e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 739 RIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTSR------QVKDqNKKVANLKHKEQVEKK 812
Cdd:COG1579 25 RLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKyeeqlgNVRN-NKEYEALQKEIESLKR 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622843288 813 KSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMA 887
Cdd:COG1579 104 RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLA 178
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
369-608 |
7.37e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 369 ENAPDSAKTKALQTVIE-MKDSKISSMERGL--RDLEEEIQMLKSngalsTEEREEEMKQMevyrshskfmKNKVEQLKE 445
Cdd:PRK11281 30 ASNGDLPTEADVQAQLDaLNKQKLLEAEDKLvqQDLEQTLALLDK-----IDRQKEETEQL----------KQQLAQAPA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 446 ELSSKEAQWEELKKRAAGLQAEVFA-----------------IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE- 507
Cdd:PRK11281 95 KLRQAQAELEALKDDNDEETRETLStlslrqlesrlaqtldqLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQq 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 508 ---VLKESLTAKEQ----RAAILQTEVDALRLRLEEKETMLNKKTkQIQDMAEEKgtqageihdlkdmLDVKERKVNVLQ 580
Cdd:PRK11281 175 irnLLKGGKVGGKAlrpsQRVLLQAEQALLNAQNDLQRKSLEGNT-QLQDLLQKQ-------------RDYLTARIQRLE 240
|
250 260
....*....|....*....|....*...
gi 1622843288 581 KKIENLQEQLRDKEKQMSslKERVKSLQ 608
Cdd:PRK11281 241 HQLQLLQEAINSKRLTLS--EKTVQEAQ 266
|
|
| PRK08475 |
PRK08475 |
F0F1 ATP synthase subunit B; Validated |
925-996 |
7.55e-03 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 236272 [Multi-domain] Cd Length: 167 Bit Score: 38.46 E-value: 7.55e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622843288 925 KHLEEVlemkQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 996
Cdd:PRK08475 60 KRLEEI----QEKLKESKEKKED--ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEE 125
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
334-756 |
8.63e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.41 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 334 RRLAEAEMHVHHLESLLE-QKEKENNMLR-------EEMhrRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEI 405
Cdd:PTZ00108 988 VRLDLYKKRKEYLLGKLErELARLSNKVRfikhvinGEL--VITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEE 1065
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 406 QMLKSNGALStEEREEEMKQMEVY-----RSHSKFMKNKVEQLKEELSSKEAQWEELKKRAAglqaevfaigqvkQELSR 480
Cdd:PTZ00108 1066 GAEEDDEADD-EDDEEELGAAVSYdyllsMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTP-------------KDMWL 1131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 481 KDteLLALQTKLETLTNQFsdskqhievlkESLTAKEQraailqtevdalrlRLEEKETMLNKKTKQIQDMAEEKGTQAG 560
Cdd:PTZ00108 1132 ED--LDKFEEALEEQEEVE-----------EKEIAKEQ--------------RLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 561 EIHDLKDMLDVKERKVNVLQKKIEnlqeqlrDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRD 640
Cdd:PTZ00108 1185 SADKSKKASVVGNSKRVDSDEKRK-------LDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDN 1257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622843288 641 RDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEAsllDLKEHASSLASSGLKKD-SRLKTLEIALEQKKEECLK---- 715
Cdd:PTZ00108 1258 DEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPD---GESNGGSKPSSPTKKKVkKRLEGSLAALKKKKKSEKKtark 1334
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1622843288 716 -----MESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSK 756
Cdd:PTZ00108 1335 kksktRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDED 1380
|
|
| |
