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Conserved domains on  [gi|1622840140|ref|XP_028684143|]
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COMM domain-containing protein 7 isoform X6 [Macaca mulatta]

Protein Classification

COMM domain-containing protein( domain architecture ID 4715)

COMM (copper metabolism gene MURR1) domain-containing protein is involved in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  15799966
SCOP:  4005215

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Commd super family cl06336
COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene ...
 19-198 3.43e-88

COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins. Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. HCaRG, a nuclear protein that might be involved in cell proliferation, is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals.


The actual alignment was detected with superfamily member cd04755:

Pssm-ID: 471425  Cd Length: 180  Bit Score: 257.38  E-value: 3.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622840140  19 MQQLNQLGAQQFSALTEVLFHFLTEPKEVftvpslqvERFLAQLSEFATTNRISLSSLRSIVKSLLLVPNGALKKSLTAK 98
Cdd:cd04755     1 IQNLNQLSEQQFSRLTEILFEFLLEPKES--------ERLLNQLDEFAGENGISLGPLKNIVKSILLVPNGALKRNLTAE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622840140  99 QVQADFITLGLSEEKATYFSEKWKQNAPTLAQWAIGQTLMINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGNQT 178
Cdd:cd04755    73 QLREDLIQLGLSEEKASYFSEQWKQHYSTLSRSAVGQTLMVNQLVDMEWKFGVTAGSSELQKVGSIFLQLKLVVRKGNQT 152

                         170       180
                  ....*....|....*....|
gi 1622840140 179 ENVYIENLLHSSLSVLYYDQ 198
Cdd:cd04755   153 ENVYMELTLPQFYSFLHEME 172
 
Name Accession Description Interval E-value
Commd7 cd04755
COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of ...
 19-198 3.43e-88

COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.


Pssm-ID: 240103  Cd Length: 180  Bit Score: 257.38  E-value: 3.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622840140  19 MQQLNQLGAQQFSALTEVLFHFLTEPKEVftvpslqvERFLAQLSEFATTNRISLSSLRSIVKSLLLVPNGALKKSLTAK 98
Cdd:cd04755     1 IQNLNQLSEQQFSRLTEILFEFLLEPKES--------ERLLNQLDEFAGENGISLGPLKNIVKSILLVPNGALKRNLTAE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622840140  99 QVQADFITLGLSEEKATYFSEKWKQNAPTLAQWAIGQTLMINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGNQT 178
Cdd:cd04755    73 QLREDLIQLGLSEEKASYFSEQWKQHYSTLSRSAVGQTLMVNQLVDMEWKFGVTAGSSELQKVGSIFLQLKLVVRKGNQT 152

                         170       180
                  ....*....|....*....|
gi 1622840140 179 ENVYIENLLHSSLSVLYYDQ 198
Cdd:cd04755   153 ENVYMELTLPQFYSFLHEME 172
COMM_domain pfam07258
COMM domain; The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a ...
 138-184 6.40e-07

COMM domain; The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain.


Pssm-ID: 462125  Cd Length: 64  Bit Score: 45.23  E-value: 6.40e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1622840140 138 MINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGNQ-TENVYIE 184
Cdd:pfam07258   1 SLPQLVDLDWRLDVQLSSSSLSKVNEPVVLLELKLSDGDGsSEEVTFE 48
 
Name Accession Description Interval E-value
Commd7 cd04755
COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of ...
 19-198 3.43e-88

COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.


Pssm-ID: 240103  Cd Length: 180  Bit Score: 257.38  E-value: 3.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622840140  19 MQQLNQLGAQQFSALTEVLFHFLTEPKEVftvpslqvERFLAQLSEFATTNRISLSSLRSIVKSLLLVPNGALKKSLTAK 98
Cdd:cd04755     1 IQNLNQLSEQQFSRLTEILFEFLLEPKES--------ERLLNQLDEFAGENGISLGPLKNIVKSILLVPNGALKRNLTAE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622840140  99 QVQADFITLGLSEEKATYFSEKWKQNAPTLAQWAIGQTLMINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGNQT 178
Cdd:cd04755    73 QLREDLIQLGLSEEKASYFSEQWKQHYSTLSRSAVGQTLMVNQLVDMEWKFGVTAGSSELQKVGSIFLQLKLVVRKGNQT 152

                         170       180
                  ....*....|....*....|
gi 1622840140 179 ENVYIENLLHSSLSVLYYDQ 198
Cdd:cd04755   153 ENVYMELTLPQFYSFLHEME 172
Commd cd04748
COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene ...
 135-184 1.54e-08

COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins. Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. HCaRG, a nuclear protein that might be involved in cell proliferation, is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals.


Pssm-ID: 240096  Cd Length: 87  Bit Score: 50.00  E-value: 1.54e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1622840140 135 QTLMINQLIDMEWKFGVTSGSSELEKVG--SIFLQLKLVVKKGNQTENVYIE 184
Cdd:cd04748    16 QSLSLPQLVDFDWRLDVQISSSSLAKVKqpTILVQLKLQVGDNNSSEKICFE 67
COMM_domain pfam07258
COMM domain; The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a ...
 138-184 6.40e-07

COMM domain; The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain.


Pssm-ID: 462125  Cd Length: 64  Bit Score: 45.23  E-value: 6.40e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1622840140 138 MINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGNQ-TENVYIE 184
Cdd:pfam07258   1 SLPQLVDLDWRLDVQLSSSSLSKVNEPVVLLELKLSDGDGsSEEVTFE 48
Commd4 cd04752
COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of ...
 107-180 3.21e-03

COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.


Pssm-ID: 240100 [Multi-domain]  Cd Length: 174  Bit Score: 37.02  E-value: 3.21e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622840140 107 LGLSEEKATYFSEKWKQNAPTLAQWAIGQTLMINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGNQTEN 180
Cdd:cd04752    72 LGLPKEHATSLCRSYEEKQSKLQESLRANSLRLSRLESVDWRVDYILSSSELQEVNEPLVQLRLKVRNADTGEI 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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