|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
361-1042 |
1.94e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.74 E-value: 1.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 361 EILQSLDFSVDEKVNLLELTW-ALDNELMTVDS--AVQQAALACYHQELSYQQGQVEQLVRERDKARQDLERAEKRNLEF 437
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELyALANEISRLEQqkQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 438 VKEMDDCHSALEQLtEKKIKHLEQGYRErlsllrseVEAErelfWEQAHRQRAALEWDVGRLQAEEAGLREKLTLALKEN 517
Cdd:TIGR02168 350 KEELESLEAELEEL-EAELEELESRLEE--------LEEQ----LETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 518 SRLQKEIVEVAEKLSDSERLALKLQKDLEFVLKDKLEPQSAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGLWA 597
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 598 RLPKNQhspSWSPGGCRRQLSGLGPAGI-SFLGNSVPVSIETELMMEQVKEhyEDLRTQLETKVNHYEREIAALKRNfek 676
Cdd:TIGR02168 497 LQENLE---GFSEGVKALLKNQSGLSGIlGVLSELISVDEGYEAAIEAALG--GRLQAVVVENLNAAKKAIAFLKQN--- 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 677 erkdmeQARRREVSVLEGQK-ADLEELHKKSQEVIWGLQEQLQDTAHDPEPERMGLAP------CCTQALCGLALRHQSH 749
Cdd:TIGR02168 569 ------ELGRVTFLPLDSIKgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlVVDDLDNALELAKKLR 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 750 LRQ--IRLEFHRLS-----------EENALL--KNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQ 814
Cdd:TIGR02168 643 PGYriVTLDGDLVRpggvitggsakTNSSILerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 815 NYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELT 894
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 895 QTLEESQGQVQ---GAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQrLLSLQGEQAgrRLDAQREEHEKQLKATE 971
Cdd:TIGR02168 803 EALDELRAELTllnEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-IESLAAEIE--ELEELIEELESELEALL 879
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622839308 972 ERVEEAEMILKNMEMLLQEKVDELKEQFEKNTKSDLLLKELYVENAHLVRALQATEekQRGAEKQSRILEE 1042
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE--VRIDNLQERLSEE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
742-1042 |
1.78e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 742 LALRHQSHLRQIRLEFHRLSEenalLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLS 821
Cdd:COG1196 216 RELKEELKELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 822 QLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQ 901
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 902 GQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVpqdrvAELQRLLSLQGEQAgrRLDAQREEHEKQLKATEERVEEAemil 981
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLE-----ELEEAEEALLERLE--RLEEELEELEEALAELEEEEEEE---- 440
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622839308 982 knmEMLLQEKVDELKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRILEE 1042
Cdd:COG1196 441 ---EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
775-1058 |
4.09e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 4.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 775 RQELEAAEstHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQS 854
Cdd:COG1196 219 KEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 855 LEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVP 934
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 935 QDRVAELQRLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQFEKNTKSDLLLKELYV 1014
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1622839308 1015 ENAHLVRALQATEEKQRGAEKQSRILEEKVRALNKLVGRIAPAA 1058
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
383-1008 |
8.08e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 8.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 383 LDNELMTVDSAVQQAALACYHQELSYQQGQVEQLVRERDKARQDLERAEKRNLEFVKEMDDCHSALEQLTEKKIKHLEQg 462
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 463 yRERLSLLRSEVEAERelfwEQAHRQRAALEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQ 542
Cdd:COG1196 304 -IARLEERRRELEERL----EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 543 KDLEFVLKDKLEPQSAELLAQEErfaavLKEYELKCRDLQDRNDELQAELEGLwarlpknqhspswspggcRRQLSGLgp 622
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQ-----LEELEEAEEALLERLERLEEELEEL------------------EEALAEL-- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 623 agisflgnsvpvsIETELMMEQVKEHYEDLRTQLETKVNHYEREIAALKRNFEKERKDMEQARR---REVSVLEGQKADL 699
Cdd:COG1196 434 -------------EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEelaEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 700 EELHKKSQEVIWGLQEQLQDTAHDPEPERMGLAPCCTQALcGLALRHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELE 779
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL-EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 780 AAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLL--TQSLEE 857
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLegEGGSAG 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 858 VACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDR 937
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622839308 938 VAELQRLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMIlkNMEML-----LQEKVDELKEQFE--KNTKSDLL 1008
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPV--NLLAIeeyeeLEERYDFLSEQREdlEEARETLE 815
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
382-1061 |
3.93e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 3.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 382 ALDNELMTVDSAVQQAALACYHQELSYQQGQVEQLVRERDKARQDLERAEKRNLEFVKEMDDCHSALEQLTEK--KIKHL 459
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 460 EQGYRERL-SLLRSEVEAERELfwEQAHRQRAALEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLA 538
Cdd:TIGR02168 304 KQILRERLaNLERQLEELEAQL--EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 539 LKLQKDLefvlkdklepqsAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGLWARLPKNQHSPswspggCRRQLS 618
Cdd:TIGR02168 382 ETLRSKV------------AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE------LQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 619 glgpagisflgnsvpvsiETELMMEQVKEHYEDLRTQLETKvnhyEREIAALKRNFEKERKDMEQARRRevsvLEGQKAD 698
Cdd:TIGR02168 444 ------------------ELEEELEELQEELERLEEALEEL----REELEEAEQALDAAERELAQLQAR----LDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 699 LEELHKKSQEVIWGLQEQLQDTAHDPE-------PERMGLApccTQALCGLALRH--QSHLRQIRLEFhrlseeNALLKN 769
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGILGVlselisvDEGYEAA---IEAALGGRLQAvvVENLNAAKKAI------AFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 770 DLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQnYKDQLSQLNDRVL--QLGQEAsTHQAQSEEHRVT 847
Cdd:TIGR02168 569 ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK-LRKALSYLLGGVLvvDDLDNA-LELAKKLRPGYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 848 IqlLTQSLEEVACSG------QQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQE 921
Cdd:TIGR02168 647 I--VTLDGDLVRPGGvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 922 VRQLQEQMSRLVPQDRVAELQRLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMILKNmemlLQEKVDELKEQFEK 1001
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKA 800
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622839308 1002 NTKS-DLLLKELYVENAHLVRALQATEEKQRGAEKQSRILEEKVRALNKLVGRIAPAALSV 1061
Cdd:TIGR02168 801 LREAlDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
408-977 |
4.59e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.17 E-value: 4.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 408 YQQGQVEQLVRERDKARQDLERAEKRNLEFVKEMDDCHSALEQLTEKkikhleqgyRERLSLLRSEVEAERElfweQAHR 487
Cdd:COG4913 264 YAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAE---------LERLEARLDALREELD----ELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 488 QRAALEWD-VGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKDLEfVLKDKLEPQSAELlaQEER 566
Cdd:COG4913 331 QIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAA-ALLEALEEELEAL--EEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 567 FAAVLKEyelkcRDLQDRNDELQAELEGLWAR---LPKNQHSpswspggCRRQLS---GLGPAGISFLGnsvpvsietEL 640
Cdd:COG4913 408 AEAEAAL-----RDLRRELRELEAEIASLERRksnIPARLLA-------LRDALAealGLDEAELPFVG---------EL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 641 MmeQVKEHYEDLRTQLETKVN-----------HYEREIAALKRNFEKERKDMEQARRREVSvLEGQKAD----LEELHKK 705
Cdd:COG4913 467 I--EVRPEEERWRGAIERVLGgfaltllvppeHYAAALRWVNRLHLRGRLVYERVRTGLPD-PERPRLDpdslAGKLDFK 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 706 SQEVIWGLQEQLQDtahdpepeRMGLAPCCTQAlcglALRHQSH----LRQIRLEFHRLSeenallKNDLGRVRQE---- 777
Cdd:COG4913 544 PHPFRAWLEAELGR--------RFDYVCVDSPE----ELRRHPRaitrAGQVKGNGTRHE------KDDRRRIRSRyvlg 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 778 ------LEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKdQLSQLNDRVLQLGQeastHQAQSEEHRVTIQLL 851
Cdd:COG4913 606 fdnrakLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWDEIDVAS----AEREIAELEAELERL 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 852 TQSLEEVAcsgqQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSR 931
Cdd:COG4913 681 DASSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFA 756
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1622839308 932 LVPQDRVAelqrllslqgEQAGRRLDAQREEHEKQLKATEERVEEA 977
Cdd:COG4913 757 AALGDAVE----------RELRENLEERIDALRARLNRAEEELERA 792
|
|
| EF-hand_7 |
pfam13499 |
EF-hand domain pair; |
218-279 |
6.12e-10 |
|
EF-hand domain pair;
Pssm-ID: 463900 [Multi-domain] Cd Length: 67 Bit Score: 56.11 E-value: 6.12e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622839308 218 ESQIRGMWEELGVGSRGHLSEQELAVVCQSVGLRG-LEKEELEDLFNKLDQDGDGKVSLEEFQ 279
Cdd:pfam13499 1 EEKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEpLSDEEVEELFKEFDLDKDGRISFEEFL 63
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
637-991 |
8.32e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 637 ETELMMEQVKEHY---EDLRTQLETKVNHYEREIAALKRnfEKERKDMEQARRREVSVLegqkaDLEELHKKSQEviwgL 713
Cdd:TIGR02168 176 ETERKLERTRENLdrlEDILNELERQLKSLERQAEKAER--YKELKAELRELELALLVL-----RLEELREELEE----L 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 714 QEQLQDTAHDPEpermglapcctqalcglALRHQSHLRQIRLEFHRLSeenallkndLGRVRQELEAAESTHNAQRKEIE 793
Cdd:TIGR02168 245 QEELKEAEEELE-----------------ELTAELQELEEKLEELRLE---------VSELEEEIEELQKELYALANEIS 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 794 VLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLK 873
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 874 VELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQG---- 949
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEeler 458
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1622839308 950 -EQAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEK 991
Cdd:TIGR02168 459 lEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
454-1059 |
2.08e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 454 KKIKHLEQGYRERLSLLR-SEVEAERELFWEQAHRQRAALEwdvgRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLS 532
Cdd:COG1196 216 RELKEELKELEAELLLLKlRELEAELEELEAELEELEAELE----ELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 533 DSERLALKLQKDLEFVLKdklepQSAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGLWARLpknqhspswspgg 612
Cdd:COG1196 292 ELLAELARLEQDIARLEE-----RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL------------- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 613 crrqlsglgpagisflgnsvpvsIETELMMEQVKEHYEDLRTQLETKvnhyEREIAALKRNFEKERKDMEQARRREVSVL 692
Cdd:COG1196 354 -----------------------EEAEAELAEAEEALLEAEAELAEA----EEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 693 EGQKADLEELHKKSQEVIwGLQEQLQDTAHDPEPERMGLapcctQALCGLALRHQSHLRQIRLEFHRLSEENALLKNDLG 772
Cdd:COG1196 407 EAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEAL-----EEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 773 RVRQELEAAESTHNAQRKEIE------------VLKKDKEKACSEMEVLTRQNQNYKD--------QLSQLNDRVLQLGQ 832
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEAdyegflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAaleaalaaALQNIVVEDDEVAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 833 EASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQS-LQLSQSELTQTLEESQGQVQGAHLRL 911
Cdd:COG1196 561 AAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADArYYVLGDTLLGRTLVAARLEAALRRAV 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 912 RQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEK 991
Cdd:COG1196 641 TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622839308 992 VDELKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRILEEKVRALNKLvGRIAPAAL 1059
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL-GPVNLLAI 787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
413-798 |
7.85e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 7.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 413 VEQLVRERDKARQDLERAEKRNLEFVKEMDDCHSALEQLTEKKIKHLEqgYRERLSLLRSEVEAERELFWEQAHRQRAAL 492
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER--YQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 493 EWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSD-SERLALKLQKDLEfvlkdklepqsaELLAQEERFAAVL 571
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIG------------ELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 572 KEYELKCRDLQDRNDELQAELEGLWARLPKnqhspswspggCRRQLSGLGPAGISFLGNSVPVSIETELMMEQVKEHYED 651
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEE-----------LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 652 LRT------QLETKVNHYEREIAALKRNF-----EKERKDMEQAR-RREVSVLEGQKADLEELHKKSQEVIWGLQEQLQD 719
Cdd:TIGR02169 380 FAEtrdelkDYREKLEKLKREINELKRELdrlqeELQRLSEELADlNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622839308 720 TAHDPEPERmglapcctqalcglalrhqSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKD 798
Cdd:TIGR02169 460 LAADLSKYE-------------------QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| EFh |
cd00051 |
EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal ... |
234-279 |
2.77e-08 |
|
EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Pssm-ID: 238008 [Multi-domain] Cd Length: 63 Bit Score: 51.39 E-value: 2.77e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1622839308 234 GHLSEQELAVVCQSVGlRGLEKEELEDLFNKLDQDGDGKVSLEEFQ 279
Cdd:cd00051 15 GTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFL 59
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
637-969 |
3.50e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 637 ETELMMEQVKEHYE---DLRTQLETKVNHYER--EIAALKRNFEKERKDME-QARRREVSVLEGQKADLEELHKKSQEVI 710
Cdd:COG1196 176 EAERKLEATEENLErleDILGELERQLEPLERqaEKAERYRELKEELKELEaELLLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 711 WGLQEQLQDTAHDPEPERMGLapcctQALCGLALRHQSHLRQIRLEFHRLS-------EENALLKNDLGRVRQELEAAES 783
Cdd:COG1196 256 EELEAELAELEAELEELRLEL-----EELELELEEAQAEEYELLAELARLEqdiarleERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 784 THNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVAcsgq 863
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE---- 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 864 qqsDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLvpQDRVAELQR 943
Cdd:COG1196 407 ---EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA--ALLEAALAE 481
|
330 340
....*....|....*....|....*.
gi 1622839308 944 LLSLQGEQAGRRLDAQREEHEKQLKA 969
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
768-1049 |
4.14e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 768 KNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACS-----------EMEVLTRQNQNYKDQLSQLNDRVLQLGQEAST 836
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyEGYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 837 HQAQSEEHRVTIQLLTQSLEEVACS-GQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQ 915
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 916 AQHSQEVRQLQEQMSRLVP-QDRVAELQ---RLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEK 991
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKlTEEYAELKeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622839308 992 VD----------ELKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRILEEKVRALNK 1049
Cdd:TIGR02169 416 QRlseeladlnaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
571-999 |
9.20e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 9.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 571 LKEYELKCRDLQDRNDELQAELEGLwarlpknqhspswspggcrrqlsglgpagisflgnsvpvsiETELmmEQVKEHYE 650
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAEL-----------------------------------------RKEL--EELEEELE 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 651 DLRTQLETKvnhyEREIAALKRNFEKERKDMEQARRReVSVLEGQKADLEELHKKSQEVIwglqEQLQDTAHDPEPERmg 730
Cdd:TIGR02168 716 QLRKELEEL----SRQISALRKDLARLEAEVEQLEER-IAQLSKELTELEAEIEELEERL----EEAEEELAEAEAEI-- 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 731 lapcctQALCGLALRHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLT 810
Cdd:TIGR02168 785 ------EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 811 RQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVacsgqqqSDQIQKLKVELECLNQEYQSLQLSQ 890
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL-------ESKRSELRRELEELREKLAQLELRL 931
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 891 SELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMsrlvpQDRVAELQRLLSLQG-----------EQAGRR--LD 957
Cdd:TIGR02168 932 EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA-----RRRLKRLENKIKELGpvnlaaieeyeELKERYdfLT 1006
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1622839308 958 AQREEHEKQLKATEERVEEaemILKNMEMLLQEKVDELKEQF 999
Cdd:TIGR02168 1007 AQKEDLTEAKETLEEAIEE---IDREARERFKDTFDQVNENF 1045
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
637-982 |
1.11e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 637 ETELMMEQVKEHYEDLRTQLETKVNHyeREIAALKRNFE-KERKDMEQARRREVSVLEGQKADLEElhkksqeVIWGLQE 715
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAERY--QALLKEKREYEgYELLKEKEALERQKEAIERQLASLEE-------ELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 716 QLQDTAhdpepERMGLApcctqalcglalrhQSHLRQIRLEFHRLSEENAL-LKNDLGRVRQELEAAESTHNAQRKEIEV 794
Cdd:TIGR02169 259 EISELE-----KRLEEI--------------EQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 795 LKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEAsthqaqsEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKV 874
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY-------AELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 875 ELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQ----------EVRQLQEQMSRLVpQDRVAELQRL 944
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEleeekedkalEIKKQEWKLEQLA-ADLSKYEQEL 471
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1622839308 945 LSLQGEQA---GRRLDAQRE--EHEKQLKATEERVEE---AEMILK 982
Cdd:TIGR02169 472 YDLKEEYDrveKELSKLQRElaEAEAQARASEERVRGgraVEEVLK 517
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
770-1050 |
2.19e-07 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 55.45 E-value: 2.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 770 DLGRVRQELEAAESTHNAQRKEI-EVLK----------------KDKEKACSEMEVLTRqnqNYKDQLSQLNDRVLQLGQ 832
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIvEALQsalnwleerkgsleraKQYQQVIDNFPKLSA---ELRQQLNNERDEPRSVPP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 833 EASTHQAQSEEHRVTIQLLTQSLEEvacsgQQQSDQIQKLKVELECLNQEyqslqlsQSELTQTLEESQGQVQG------ 906
Cdd:PRK10929 101 NMSTDALEQEILQVSSQLLEKSRQA-----QQEQDRAREISDSLSQLPQQ-------QTEARRQLNEIERRLQTlgtpnt 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 907 ----AHLRLRQAQ-AQHSQEVRQLqeQMSRLVPQDRvAELQRLLSLQGEQAGRRLDAQREEHEKQLKAteERVEEAEMIL 981
Cdd:PRK10929 169 plaqAQLTALQAEsAALKALVDEL--ELAQLSANNR-QELARLRSELAKKRSQQLDAYLQALRNQLNS--QRQREAERAL 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622839308 982 KNMEMLLQEKVD---ELKEQFEKNtksdlllKELYVENAHLVRALQATEEKQRGAEKQSrileEKVR-ALNKL 1050
Cdd:PRK10929 244 ESTELLAEQSGDlpkSIVAQFKIN-------RELSQALNQQAQRMDLIASQQRQAASQT----LQVRqALNTL 305
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
776-1048 |
2.61e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 776 QELEAAESTHNAQRKE--IEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQ 853
Cdd:TIGR04523 291 NQLKSEISDLNNQKEQdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 854 SLEEVACSGQQQSDQIQKLKVELECLNQEYQslqlSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLV 933
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQ----NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 934 PQDRVAELQRllslqgeqagRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQFEKNTKSDLLLKELY 1013
Cdd:TIGR04523 447 NQDSVKELII----------KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLT 516
|
250 260 270
....*....|....*....|....*....|....*
gi 1622839308 1014 VENAHLVRALQATEEKQRGAEKQSRILEEKVRALN 1048
Cdd:TIGR04523 517 KKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
408-1015 |
4.28e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 4.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 408 YQQGQVEQLVRERDKARQDLERAEK----RNLEFVKEMDDCHSALEQLTEKKIKHLEQGYRERL----------SLLRSE 473
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKaeeeRNNEEIRKFEEARMAHFARRQAAIKAEEARKADELkkaeekkkadEAKKAE 1299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 474 VEAERELFWEQAHRQRAAlewDVGRLQAEEAglrEKLTLALKENSRLQKEIVEVAEKlsDSERLALKLQKDLEFVLKDKL 553
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKA---DEAKKKAEEA---KKKADAAKKKAEEAKKAAEAAKA--EAEAAADEAEAAEEKAEAAEK 1371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 554 EPQSAELLAQEERFAA--VLKEYELKCRDLQDRN--DELQ-AELEGLWARLPKNQHSPSWSPGGCRRQLSGLGPAgisfl 628
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAeeKKKADEAKKKAEEDKKkaDELKkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA----- 1446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 629 gNSVPVSIETELMMEQVKEHYEDLRTQLETKVNHYEREIA-ALKRNFEKERKDMEQARRREVSVLEGQKADLEELHKKSQ 707
Cdd:PTZ00121 1447 -DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAdEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 708 EVIWGLQEQLQDTAHDPEPERmglapcctqalcglalrhqshlrqiRLEFHRLSEEnaLLKNDLGRVRQELEAAESTHNA 787
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKK-------------------------KADELKKAEE--LKKAEEKKKAEEAKKAEEDKNM 1578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 788 QRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASthqaQSEEHRVTIQLLTQSLEEVACSGQQQSD 867
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK----KAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 868 QIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQgaHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSL 947
Cdd:PTZ00121 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE--ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622839308 948 QgeqagrrlDAQREEHEKQLKATEERVEEAEmilknmemllQEKVDELKEQFEKNTKSDLLLKELYVE 1015
Cdd:PTZ00121 1733 E--------EAKKEAEEDKKKAEEAKKDEEE----------KKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
827-1058 |
4.63e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 4.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 827 VLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQG 906
Cdd:COG4942 8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 907 AHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQG-EQAGRRLD------AQREEHEKQLKATEERVEEAEM 979
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQylkylaPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622839308 980 ILKNMEMLLQEKVDELKEQFEKntksdllLKELYVENAHLVRALQATEEKQRgaeKQSRILEEKVRALNKLVGRIAPAA 1058
Cdd:COG4942 168 ELEAERAELEALLAELEEERAA-------LEALKAERQKLLARLEKELAELA---AELAELQQEAEELEALIARLEAEA 236
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
756-1055 |
6.23e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 756 EFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQ-------NYKDQLSQLNDRVL 828
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSsleqeieNVKSELKELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 829 QLgqEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAH 908
Cdd:TIGR02169 769 EL--EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 909 LR---LRQAQAQHSQEVRQLQEQMSRLvpQDRVAELQRLLSlqgeqagrRLDAQREEHEKQLKATEERVEEAE------- 978
Cdd:TIGR02169 847 EQiksIEKEIENLNGKKEELEEELEEL--EAALRDLESRLG--------DLKKERDELEAQLRELERKIEELEaqiekkr 916
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 979 MILKNMEMLLQEKVDELKEqFEKNTKSD-------LLLKELYVENAHLVRALQATEEKQRGAEKQsriLEEKVRALNKLV 1051
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSE-IEDPKGEDeeipeeeLSLEDVQAELQRVEEEIRALEPVNMLAIQE---YEEVLKRLDELK 992
|
....
gi 1622839308 1052 GRIA 1055
Cdd:TIGR02169 993 EKRA 996
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
488-1054 |
1.04e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 488 QRAALEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKDLEFVLKDKLEPQSAELLAQEERF 567
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 568 A-----AVLKEYELKCRDLQDRNDELQAELEGLWARLPKNQhspswspggcrRQLSGLgpagisflgNSVPVSIETELmm 642
Cdd:TIGR04523 198 KlelllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQ-----------QEINEK---------TTEISNTQTQL-- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 643 EQVKEHYEDLRTQLETKVNHYEREIAALKrNFEKERKDMEQarrrEVSVLEGQKAdlEELHKKSQEVIWGLQEQLQDTah 722
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIK-ELEKQLNQLKS----EISDLNNQKE--QDWNKELKSELKNQEKKLEEI-- 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 723 dpepermglapcctqalcglalrhQSHLRQIRlefHRLSEenalLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKA 802
Cdd:TIGR04523 327 ------------------------QNQISQNN---KIISQ----LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 803 CSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQE 882
Cdd:TIGR04523 376 KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELI 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 883 YQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQ---AQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQAgrrLDAQ 959
Cdd:TIGR04523 456 IKNLDNTRESLETQLKVLSRSINKIKQNLEQKQkelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK---LESE 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 960 REEHEKQLKATEERVEEAEMILKNMEML-----LQEKVDELKEQFE----KNTKSDLLLKELYVENAHLVRALQATEEKQ 1030
Cdd:TIGR04523 533 KKEKESKISDLEDELNKDDFELKKENLEkeideKNKEIEELKQTQKslkkKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
570 580
....*....|....*....|....
gi 1622839308 1031 RGAEKQSRILEEKVRALNKLVGRI 1054
Cdd:TIGR04523 613 SSLEKELEKAKKENEKLSSIIKNI 636
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
386-710 |
1.10e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 386 ELMTVDSAVQQAALACYHQELSYQQGQVEQLVRERDKARQ-------DLERAEKRNLEFVKEMDDCHSALEQLTEKKIKH 458
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRqisalrkDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 459 LEQGYRERLSLLRSEVE-AERELFWEQAHRQRAALEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERL 537
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEiEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 538 ALKLQKDLEFV-------------LKDKLEPQSAELLAQEERFAAVLKEYELKCRDLQD---RNDELQAELEGLWARLpk 601
Cdd:TIGR02168 847 IEELSEDIESLaaeieeleelieeLESELEALLNERASLEEALALLRSELEELSEELRElesKRSELRRELEELREKL-- 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 602 NQHspswspggcRRQLSGLGPAGISFLGNsvpVSIETELMMEQVKEHY---EDLRTQLETKVNHYEREIAALKR-NFEKE 677
Cdd:TIGR02168 925 AQL---------ELRLEGLEVRIDNLQER---LSEEYSLTLEEAEALEnkiEDDEEEARRRLKRLENKIKELGPvNLAAI 992
|
330 340 350
....*....|....*....|....*....|...
gi 1622839308 678 RKDMEQARRREvsVLEGQKADLEELHKKSQEVI 710
Cdd:TIGR02168 993 EEYEELKERYD--FLTAQKEDLTEAKETLEEAI 1023
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
780-1004 |
1.51e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 780 AAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVA 859
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 860 CSGQQQSDQIQKLKVELECL-NQEYQSLQLSQSELTQTLEESQ--GQVQGAHLRLRQAQAQHSQEVRQLQEQMsrlvpQD 936
Cdd:COG4942 97 AELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAEL-----EA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622839308 937 RVAELQRLLSLQGEQAgRRLDAQREEHEKQLKATEERVEEAEMILKNM---EMLLQEKVDELKEQFEKNTK 1004
Cdd:COG4942 172 ERAELEALLAELEEER-AALEALKAERQKLLARLEKELAELAAELAELqqeAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
731-977 |
1.56e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 731 LAPCCTQALCGLALRHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLT 810
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 811 RQNQNYKDQLSQLNDrvlQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSG-------QQQSDQIQKLKVELECLNQEY 883
Cdd:COG4942 90 KEIAELRAELEAQKE---ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLqylkylaPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 884 QSLQLSQSELTQTLEESQGQVQgahlRLRQAQAQHSQEVRQLQEQMSRLvpQDRVAELQrllslqgeQAGRRLDAQREEH 963
Cdd:COG4942 167 AELEAERAELEALLAELEEERA----ALEALKAERQKLLARLEKELAEL--AAELAELQ--------QEAEELEALIARL 232
|
250
....*....|....
gi 1622839308 964 EKQLKATEERVEEA 977
Cdd:COG4942 233 EAEAAAAAERTPAA 246
|
|
| EF-hand_8 |
pfam13833 |
EF-hand domain pair; |
232-278 |
1.88e-06 |
|
EF-hand domain pair;
Pssm-ID: 404678 [Multi-domain] Cd Length: 54 Bit Score: 45.77 E-value: 1.88e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1622839308 232 SRGHLSEQELAVVCQSVGLRGLEKEELEDLFNKLDQDGDGKVSLEEF 278
Cdd:pfam13833 1 EKGVITREELKRALALLGLKDLSEDEVDILFREFDTDGDGYISFDEF 47
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
751-979 |
3.97e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 3.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 751 RQIRLEFHRLSEENALLKNDLGRVRQELEAAEsthnaqrKEIEVLKKDkekacSEMEVLTRQNQNYKDQLSQLNDRVLQL 830
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAE-------AALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 831 GQEASTHQAQSEEHRVTIQLLTQSLEEVacsgqQQSDQIQKLKVELECLNQEYQSLQLS-----------QSELTQTLEE 899
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSARytpnhpdvialRAQIAALRAQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 900 SQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLvpQDRVAELQRLlslqgEQAGRRLDAQREEHEKQLKATEERVEEAEM 979
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQL--EARLAELPEL-----EAELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
775-1001 |
5.59e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 775 RQELEAAESTHNAQRKEIEVLKKDKEKAcsemevltrqnqnyKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQS 854
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKAL--------------LKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 855 LEEVACSGQQQSDQIQKLKVELECL-NQEYQSLQLSQSELTQTLEESQ--GQVQGAHLRLRQAQAQHSQEVRQLQEQMsr 931
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAEL-- 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 932 lvpQDRVAELQRLLSLQGEQAgRRLDAQREEHEKQLKATEERVEEAEMILKNmemlLQEKVDELKEQFEK 1001
Cdd:COG4942 170 ---EAERAELEALLAELEEER-AALEALKAERQKLLARLEKELAELAAELAE----LQQEAEELEALIAR 231
|
|
| FRQ1 |
COG5126 |
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; |
222-282 |
8.07e-06 |
|
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];
Pssm-ID: 444056 [Multi-domain] Cd Length: 137 Bit Score: 46.71 E-value: 8.07e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622839308 222 RGMWEELGVGSRGHLSEQELAVVCQSVGLRGLEkEELEDLFNKLDQDGDGKVSLEEFQLGL 282
Cdd:COG5126 36 ATLFSEADTDGDGRISREEFVAGMESLFEATVE-PFARAAFDLLDTDGDGKISADEFRRLL 95
|
|
| FRQ1 |
COG5126 |
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; |
234-278 |
8.46e-06 |
|
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];
Pssm-ID: 444056 [Multi-domain] Cd Length: 137 Bit Score: 46.32 E-value: 8.46e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1622839308 234 GHLSEQELAVVCQSVGLRgleKEELEDLFNKLDQDGDGKVSLEEF 278
Cdd:COG5126 84 GKISADEFRRLLTALGVS---EEEADELFARLDTDGDGKISFEEF 125
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
412-1058 |
9.62e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 9.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 412 QVEQLVRERDKA-RQDLERAEKRNLEFVKEMDDCHSALEQL--TEKKIKHLEQ---GYRERLSLLRSEVEAERELFWEQA 485
Cdd:TIGR02169 199 QLERLRREREKAeRYQALLKEKREYEGYELLKEKEALERQKeaIERQLASLEEeleKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 486 HRQRA-------ALEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKDLE--FVLKDKLEPQ 556
Cdd:TIGR02169 279 KKIKDlgeeeqlRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeeRKRRDKLTEE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 557 SAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGLwarlpKNQHSPSWSPGGCRRQLSGLGPAGISFLGNSVPVSI 636
Cdd:TIGR02169 359 YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL-----KREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 637 ----ETELMMEQVKEHYEDLRTQLET---KVNHYEREIAALK---RNFEKERKDMEQ------ARRREVSVLEGQKADLE 700
Cdd:TIGR02169 434 akinELEEEKEDKALEIKKQEWKLEQlaaDLSKYEQELYDLKeeyDRVEKELSKLQRelaeaeAQARASEERVRGGRAVE 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 701 ELHKKSQEVIWGLQEQL--QDTAHDPEPE-----RM--------GLAPCCTQALCGLALRHQSHL-----RQIRLEFHRL 760
Cdd:TIGR02169 514 EVLKASIQGVHGTVAQLgsVGERYATAIEvaagnRLnnvvveddAVAKEAIELLKRRKAGRATFLplnkmRDERRDLSIL 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 761 SEENAL-LKNDLGR-----------------VRQELEAAEST-----------------------HNAQRKEIEVLKKDK 799
Cdd:TIGR02169 594 SEDGVIgFAVDLVEfdpkyepafkyvfgdtlVVEDIEAARRLmgkyrmvtlegelfeksgamtggSRAPRGGILFSRSEP 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 800 EKACS---EMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVEL 876
Cdd:TIGR02169 674 AELQRlreRLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 877 ECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQ-EVRQLQEQMSRLVPQDRVAElQRLLSLQGEQAgrR 955
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQaELSKLEEEVSRIEARLREIE-QKLNRLTLEKE--Y 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 956 LDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQfekntksDLLLKELYVENAHLVRALQATEEKQRGAEK 1035
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL-------EAALRDLESRLGDLKKERDELEAQLRELER 903
|
730 740
....*....|....*....|...
gi 1622839308 1036 QSRILEEKVRALNKLVGRIAPAA 1058
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKL 926
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
767-1025 |
1.08e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.35 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 767 LKNDLGRVRQELEAAESTHNAQRKEIEvlkkdkEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRv 846
Cdd:pfam05557 7 SKARLSQLQNEKKQMELEHKRARIELE------KKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNR- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 847 tiqLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEY----QSLQLSQSELTQTLEESQGqVQGAHLRLRQAQAQHSQEV 922
Cdd:pfam05557 80 ---LKKKYLEALNKKLNEKESQLADAREVISCLKNELselrRQIQRAELELQSTNSELEE-LQERLDLLKAKASEAEQLR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 923 RQLQ-EQMSRLVPQDRVAELQRLLSLQGEQAGRRLDAQRE-----EHEKQLKATEERVEEAEMILKNMEmLLQEKVDELK 996
Cdd:pfam05557 156 QNLEkQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSElaripELEKELERLREHNKHLNENIENKL-LLKEEVEDLK 234
|
250 260
....*....|....*....|....*....
gi 1622839308 997 EQFEKNTKSDLLLKELYVENAHLVRALQA 1025
Cdd:pfam05557 235 RKLEREEKYREEAATLELEKEKLEQELQS 263
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
643-1049 |
2.11e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 643 EQVKEHYEDLRTQLETK--------VNHYEREIAALK---RNFEKERKDMEQARRREVSVLEGQKADLEELHKKSQEViw 711
Cdd:PRK02224 183 SDQRGSLDQLKAQIEEKeekdlherLNGLESELAELDeeiERYEEQREQARETRDEADEVLEEHEERREELETLEAEI-- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 712 glqEQLQDTAHDPEPERMGLApcctqalcglalRHQSHLRQIRLEfhrLSEENALLKNDLGRVRQELEAAESTHNAQRKE 791
Cdd:PRK02224 261 ---EDLRETIAETEREREELA------------EEVRDLRERLEE---LEEERDDLLAEAGLDDADAEAVEARREELEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 792 IEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQK 871
Cdd:PRK02224 323 DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 872 LKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQA--------------QHSQEVRQLQEQmsrlvpQDR 937
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvEGSPHVETIEED------RER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 938 VAELQ-RLLSLQGEQAGRrldAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQFEKntksdllLKELYVEN 1016
Cdd:PRK02224 477 VEELEaELEDLEEEVEEV---EERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER-------AEELRERA 546
|
410 420 430
....*....|....*....|....*....|...
gi 1622839308 1017 AHLVRALQATEEKQRGAEKQSRILEEKVRALNK 1049
Cdd:PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
848-1046 |
2.37e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 848 IQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQE 927
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 928 QMSRLVPQDRVAE-------LQRLLSLQ--GEQAGRRLDAQREEhEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQ 998
Cdd:COG3883 98 SGGSVSYLDVLLGsesfsdfLDRLSALSkiADADADLLEELKAD-KAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1622839308 999 FEKNTKsdlLLKELYVENAHLVRALQATEEKQRGAEKQSRILEEKVRA 1046
Cdd:COG3883 177 QAEQEA---LLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
767-1049 |
3.04e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 767 LKNDLGRVRQELEAAESTHNAQRKEIEVLkkDKEKACSEMEVLTRQN-----QNYKDQLSQLNDRVLQLGQEASTHQAQS 841
Cdd:PRK04863 395 LKSQLADYQQALDVQQTRAIQYQQAVQAL--ERAKQLCGLPDLTADNaedwlEEFQAKEQEATEELLSLEQKLSVAQAAH 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 842 EEHRVTIQLLTQSLEEVACSGQQQSDQiqklkvELeclnqeyqslqLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQE 921
Cdd:PRK04863 473 SQFEQAYQLVRKIAGEVSRSEAWDVAR------EL-----------LRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRA 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 922 VRQLQEQMSRL-VPQDRVAELQRLLSlqgeqagrRLDAQREEHEKQLKATEERVEEAEMILKNmemlLQEKVDELKEQFE 1000
Cdd:PRK04863 536 ERLLAEFCKRLgKNLDDEDELEQLQE--------ELEARLESLSESVSEARERRMALRQQLEQ----LQARIQRLAARAP 603
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622839308 1001 KNTKSDLLLKELY------VENAHLVRAL-QATEEKQRGAEKQSRILEEKVRALNK 1049
Cdd:PRK04863 604 AWLAAQDALARLReqsgeeFEDSQDVTEYmQQLLERERELTVERDELAARKQALDE 659
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
417-1043 |
3.23e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 417 VRERDKAR--QDLERAEK-RNLEFVKEMDDCHSALEQLTEKKIKHLEQGYRERLSLLRSEVEAERELFWEQAHRQRAALE 493
Cdd:PTZ00121 1187 VRKAEELRkaEDARKAEAaRKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 494 WDVGRLQAEEAGLREKLTLALK----ENSRLQKEI--VEVAEKLSDSERLALKLQKDLEfvlKDKLEPQSAELLAQEERf 567
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEkkkaDEAKKAEEKkkADEAKKKAEEAKKADEAKKKAE---EAKKKADAAKKKAEEAK- 1342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 568 aavlKEYELKCRDLQDRNDELQAELEGLWARLPKNQHSPSWSPGGCRRqlsglgpagisflGNSVPVSIETELMMEQVKE 647
Cdd:PTZ00121 1343 ----KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK-------------AEEKKKADEAKKKAEEDKK 1405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 648 HYEDLRTQLETKvnhyeREIAALKRNFEKERKDMEQARRREvsvlEGQKADleELHKKSQEViwGLQEQLQDTAHDPEPE 727
Cdd:PTZ00121 1406 KADELKKAAAAK-----KKADEAKKKAEEKKKADEAKKKAE----EAKKAD--EAKKKAEEA--KKAEEAKKKAEEAKKA 1472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 728 RmglapcctqalcglALRHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQ-RKEIEVLKKDKEKACSEm 806
Cdd:PTZ00121 1473 D--------------EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEeAKKADEAKKAEEAKKAD- 1537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 807 EVLTRQNQNYKDQLSQLnDRVLQLGQEASTHQAQSEEHRVTIQLltQSLEEVACSGQQQSDQIQKLKVELECLNQEyqsl 886
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKA-EELKKAEEKKKAEEAKKAEEDKNMAL--RKAEEAKKAEEARIEEVMKLYEEEKKMKAE---- 1610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 887 qlsqseltQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRllSLQGEQAGRRLDAQREEHEKQ 966
Cdd:PTZ00121 1611 --------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN--KIKAAEEAKKAEEDKKKAEEA 1680
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622839308 967 LKATEERVEEAEMILKNMEMllQEKVDELKEQF-EKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRILEEK 1043
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEE--AKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
752-1057 |
7.15e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 7.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 752 QIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRkeievlkkdkekacSEMEVLTRQNQNYKDQLSQLNDRvLQLG 831
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMA--------------RELAELNEAESDLEQDYQAASDH-LNLV 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 832 QEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSL--QLS--QSEL-------------T 894
Cdd:PRK04863 341 QTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELksQLAdyQQALdvqqtraiqyqqaV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 895 QTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQmsrlvpQDRVAELQRLLSL------QGEQAGR----------RLDA 958
Cdd:PRK04863 421 QALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA------TEELLSLEQKLSVaqaahsQFEQAYQlvrkiagevsRSEA 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 959 QR------EEHEKQlKATEERVEEAEMILKNMEMLL--QEKVDELKEQFEKNTKSDL----LLKELYVENAHLVRALQAT 1026
Cdd:PRK04863 495 WDvarellRRLREQ-RHLAEQLQQLRMRLSELEQRLrqQQRAERLLAEFCKRLGKNLddedELEQLQEELEARLESLSES 573
|
330 340 350
....*....|....*....|....*....|.
gi 1622839308 1027 EEKQRGAEKQSRILEEKVRALNKLVGRIAPA 1057
Cdd:PRK04863 574 VSEARERRMALRQQLEQLQARIQRLAARAPA 604
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
760-1055 |
1.07e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 760 LSEENALLKNDLGRVRQELEAAEsthnAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQ-------------LSQLNDR 826
Cdd:PRK11281 54 LEAEDKLVQQDLEQTLALLDKID----RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDndeetretlstlsLRQLESR 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 827 V------LQLGQEA--------STHQAQSEEHRVTI-------QLLTQSLEEVACSGQQQS-DQIQKLKVELECLNQ--E 882
Cdd:PRK11281 130 LaqtldqLQNAQNDlaeynsqlVSLQTQPERAQAALyansqrlQQIRNLLKGGKVGGKALRpSQRVLLQAEQALLNAqnD 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 883 YQSLQLSQSELTQTLeesqGQVQGAHLRLRQAQAQHsqevrqlqeqmsrlvpqdRVAELQRLLSlqgeqagrrldaqree 962
Cdd:PRK11281 210 LQRKSLEGNTQLQDL----LQKQRDYLTARIQRLEH------------------QLQLLQEAIN---------------- 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 963 hEKQLKATEERVEEAEmilkNMEMLLQEKVDEL-KEQFEKNTK-SDLLLK-----------ELYVENAhLVRALQAteek 1029
Cdd:PRK11281 252 -SKRLTLSEKTVQEAQ----SQDEAARIQANPLvAQELEINLQlSQRLLKateklntltqqNLRVKNW-LDRLTQS---- 321
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1622839308 1030 QRGAEKQ----------SRILEEKVRAL------NKLVGRIA 1055
Cdd:PRK11281 322 ERNIKEQisvlkgslllSRILYQQQQALpsadliEGLADRIA 363
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
404-858 |
1.14e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 404 QELSYQQGQVEQLVRERDKARQDLERAEKRNLEFVKEMDDCHSALEQL----TEKKIKHLEQGYRERLSLLRSEVEAere 479
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqELEALEAELAELPERLEELEERLEE--- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 480 lfWEQAHRQRAALEWDVGRLQAEEAGLREKLTL--------ALKENSRLQKEIVEVAEKLSDSERLALKLQKDLEFVLKD 551
Cdd:COG4717 158 --LRELEEELEELEAELAELQEELEELLEQLSLateeelqdLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 552 KLEPQSAELLAQEERFAAVLKeyelkcrdlqdrndeLQAELEGLWARLPknqhSPSWSPGGCRRQLSGLGPAGISFLGNS 631
Cdd:COG4717 236 LEAAALEERLKEARLLLLIAA---------------ALLALLGLGGSLL----SLILTIAGVLFLVLGLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 632 VPVSIETELMMEQVKEHYEDLRTQLETKVNHYEREIAALKRNFEKERKDMEQARRREVSVLEGQK-ADLEELHKKSQEVi 710
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEeLQLEELEQEIAAL- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 711 wgLQEQLQDTAHDpepermgLAPCCTQALCGLALRHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRK 790
Cdd:COG4717 376 --LAEAGVEDEEE-------LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622839308 791 EIEVLKKDKEKACSEMEVLTRQnqnykDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEV 858
Cdd:COG4717 447 ELEELREELAELEAELEQLEED-----GELAELLQELEELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
776-974 |
1.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 776 QELEAAESTHNAQRKEIEVLKKDKEKAcsEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSL 855
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 856 EEvacSGQQQSDQIQK----LKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSR 931
Cdd:COG4913 333 RG---NGGDRLEQLEReierLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE 409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1622839308 932 LVpqDRVAELQRLL-SLQGEQAG---------RRLDAQREEHEKQLKATEERV 974
Cdd:COG4913 410 AE--AALRDLRRELrELEAEIASlerrksnipARLLALRDALAEALGLDEAEL 460
|
|
| EF-hand_5 |
pfam13202 |
EF hand; |
258-279 |
1.25e-04 |
|
EF hand;
Pssm-ID: 433035 [Multi-domain] Cd Length: 25 Bit Score: 40.00 E-value: 1.25e-04
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
383-1005 |
1.67e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 383 LDNELMTVDSAVQQAALACYHQELSYQQGQVEQLVRERDKARQDLErAEKRNLEFVKEMDDCHSALEQLTEKKIKHLEQG 462
Cdd:TIGR00618 272 LRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQ-SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 463 YRERLsllRSEVEAERELFWEQAHRQRAALEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKlsDSERLALKLQ 542
Cdd:TIGR00618 351 HSQEI---HIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR--TSAFRDLQGQ 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 543 KdleFVLKDKLEPQSAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGL-----------------WARLPKNQHS 605
Cdd:TIGR00618 426 L---AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLqtkeqihlqetrkkavvLARLLELQEE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 606 PSWSPGGCRRQLSGLGPAGISflGNSVPVSIETELMMEQVKEHYEDLRTQLETKVNHyereIAALKRNFEKERKDMEQAR 685
Cdd:TIGR00618 503 PCPLCGSCIHPNPARQDIDNP--GPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ----RASLKEQMQEIQQSFSILT 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 686 RREVSVlegqKADLEELHKKSQEVIWGLQEQLqdtahdpEPERMGLapcCTQALCGLALRHQSHLRQIRLEFHRLSEENA 765
Cdd:TIGR00618 577 QCDNRS----KEDIPNLQNITVRLQDLTEKLS-------EAEDMLA---CEQHALLRKLQPEQDLQDVRLHLQQCSQELA 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 766 LLKNDLGRVRQELEAAESTHNAQ--RKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNdrvlQLGQEASTHQAQSEE 843
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALsiRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQ----TLLRELETHIEEYDR 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 844 HRVTIQLLTQSleevacsgqqqsdQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVR 923
Cdd:TIGR00618 719 EFNEIENASSS-------------LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 924 QLQEQMSRLvpQDRVAELQRLLSLQGEQA---GRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQFE 1000
Cdd:TIGR00618 786 EIQFFNRLR--EEDTHLLKTLEAEIGQEIpsdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
....*
gi 1622839308 1001 KNTKS 1005
Cdd:TIGR00618 864 LTQEQ 868
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
750-1039 |
2.18e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 750 LRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQ 829
Cdd:COG4372 33 LRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 830 LGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHL 909
Cdd:COG4372 113 LQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 910 RLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQ 989
Cdd:COG4372 193 NRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKD 272
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1622839308 990 EKVDELKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRI 1039
Cdd:COG4372 273 TEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALL 322
|
|
| EF-hand_1 |
pfam00036 |
EF hand; The EF-hands can be divided into two classes: signalling proteins and buffering ... |
257-282 |
2.38e-04 |
|
EF hand; The EF-hands can be divided into two classes: signalling proteins and buffering/transport proteins. The first group is the largest and includes the most well-known members of the family such as calmodulin, troponin C and S100B. These proteins typically undergo a calcium-dependent conformational change which opens a target binding site. The latter group is represented by calbindin D9k and do not undergo calcium dependent conformational changes.
Pssm-ID: 425435 [Multi-domain] Cd Length: 29 Bit Score: 39.31 E-value: 2.38e-04
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
397-1042 |
2.54e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 397 AALACYHQELSYQQGQVEQLVRERDKARQDLERAE---KRNLEFVKEMDDCHSALEQLTEKKikhleqgyrerlsllrSE 473
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEEQREQARETRDEADevlEEHEERREELETLEAEIEDLRETI----------------AE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 474 VEAERELFWEQAHRQRAALEwdvgRLQAEEAGLREKLTL-------ALKENSRLQKEIVEVAEKLSDSERLALKLQKDLE 546
Cdd:PRK02224 270 TEREREELAEEVRDLRERLE----ELEEERDDLLAEAGLddadaeaVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 547 FVLK--DKLEPQSAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGLWARlpknqhspswspggcrrqlsgLGPAG 624
Cdd:PRK02224 346 SLREdaDDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER---------------------FGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 625 ISFlgnsvpvsietelmmEQVKEHYEDLRtqletkvnhyereiaalkrnfekERKDMEQARRREVSvlegqkADLEELHK 704
Cdd:PRK02224 405 VDL---------------GNAEDFLEELR-----------------------EERDELREREAELE------ATLRTARE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 705 KSQEviwglQEQLQDTAHDPEpermglapcCTQALCGLAlrHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAEST 784
Cdd:PRK02224 441 RVEE-----AEALLEAGKCPE---------CGQPVEGSP--HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 785 HNAQRkEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQA-------QSEEHRVTIQLLTQSLEE 857
Cdd:PRK02224 505 VEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREaaaeaeeEAEEAREEVAELNSKLAE 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 858 VAcSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQE-VRQLQEQMSRLVP-Q 935
Cdd:PRK02224 584 LK-ERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEArIEEAREDKERAEEyL 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 936 DRVAElqrllslqgeqAGRRLDAQREEHEKQLKATEERVEEAEMilknmemlLQEKVDELKEQFEKntksdllLKELYVE 1015
Cdd:PRK02224 663 EQVEE-----------KLDELREERDDLQAEIGAVENELEELEE--------LRERREALENRVEA-------LEALYDE 716
|
650 660 670
....*....|....*....|....*....|...
gi 1622839308 1016 nahlVRALQAT------EEKQRGAEKQSRILEE 1042
Cdd:PRK02224 717 ----AEELESMygdlraELRQRNVETLERMLNE 745
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
370-979 |
3.16e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 44.74 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 370 VDEKVNLLELTwALDNELMTVDSAVQQAALACYHQELSYQQGQVEQLVRERDKARQDLERAEKRNLEfvkemddchsALE 449
Cdd:pfam07111 78 LEEEVRLLRET-SLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELE----------EIQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 450 QLTEKKIKHLEQGYRERLSLLRSEVEAerelfweqahrqraaLEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAE 529
Cdd:pfam07111 147 RLHQEQLSSLTQAHEEALSSLTSKAEG---------------LEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQE 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 530 KLSDSERLALKLQKDLEFVLKDKLEPQSAELlaqeERfaavlKEYELKCRDLQDRNDELQAELEGLWARLPKNQHSPSWS 609
Cdd:pfam07111 212 ELEAQVTLVESLRKYVGEQVPPEVHSQTWEL----ER-----QELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQ 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 610 PGGCRRQLSGLGPAGISFlgnsvpvSIETELMMEQVKEHYEDLRTQLetkvnhyereiaalkrnfekerKDMEQARRREV 689
Cdd:pfam07111 283 EEELTRKIQPSDSLEPEF-------PKKCRSLLNRWREKVFALMVQL----------------------KAQDLEHRDSV 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 690 SVLEGQKADLEELHKKSQEVIWGLQEQLQDTAHDPEPERMGLAPCCTQALCGLALRHQSHLR------QIRLEFHRLSEE 763
Cdd:pfam07111 334 KQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQtasaeeQLKFVVNAMSST 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 764 NALLKNDLGRVRQELEAAESTHNaqRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLN-----DRVLQLGQEASTHQ 838
Cdd:pfam07111 414 QIWLETTMTRVEQAVARIPSLSN--RLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAppvdaDLSLELEQLREERN 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 839 AQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELEclnQEYQSLQLSQSELTQTLEES-QGQVQGAhlrlrQAQAQ 917
Cdd:pfam07111 492 RLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLE---QELQRAQESLASVGQQLEVArQGQQEST-----EEAAS 563
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 918 HSQEVRQLQEQMSRLVpQDRVAELQRLLSLQGEQAGRRLDAQREEHEK--------QLKATEERVEEAEM 979
Cdd:pfam07111 564 LRQELTQQQEIYGQAL-QEKVAEVETRLREQLSDTKRRLNEARREQAKavvslrqiQHRATQEKERNQEL 632
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
410-1012 |
3.36e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 410 QGQVEQLVR---ERDKA-RQ-----DLERAEKRNLEFVKEMDDCHSALEQL------TEKKIKHLEQGYRERLSLLRSEV 474
Cdd:PRK03918 134 QGEIDAILEsdeSREKVvRQilgldDYENAYKNLGEVIKEIKRRIERLEKFikrtenIEELIKEKEKELEEVLREINEIS 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 475 EAERELfweqaHRQRAALEWDVGRLQAeeagLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKDLEFVLKDKLE 554
Cdd:PRK03918 214 SELPEL-----REELEKLEKEVKELEE----LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 555 PQSAELLAQE-ERFAAVLKEYELKCRDLQDRNDELQAELEGLWARLPKnqhspswspggcrrqlsglgpagisfLGNSVP 633
Cdd:PRK03918 285 LKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE--------------------------LEEKEE 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 634 VSIETELMMEQVKEHYEdlrtQLETKVNHYE--REIAALKRNFEKERKDMEQAR-RREVSVLEGQKADLEELHKKSQEVI 710
Cdd:PRK03918 339 RLEELKKKLKELEKRLE----ELEERHELYEeaKAKKEELERLKKRLTGLTPEKlEKELEELEKAKEEIEEEISKITARI 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 711 WGLQEQLQD--TAHDPEPERMGLAPCCTQALC-----GLALRHQSHLRQIRLEFHRLSEENALLKNDLGRVRQEL----- 778
Cdd:PRK03918 415 GELKKEIKElkKAIEELKKAKGKCPVCGRELTeehrkELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkese 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 779 -----EAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQ 853
Cdd:PRK03918 495 liklkELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAE 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 854 SLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEesqgqvqgahlRLRQAQAQHSQEVRQLQEQMSRLv 933
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEK-----------ELKKLEEELDKAFEELAETEKRL- 642
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622839308 934 pQDRVAELQRLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQFEKNTKSDLLLKEL 1012
Cdd:PRK03918 643 -EELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720
|
|
| EFh |
smart00054 |
EF-hand, calcium binding motif; EF-hands are calcium-binding motifs that occur at least in ... |
257-278 |
3.54e-04 |
|
EF-hand, calcium binding motif; EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Pssm-ID: 197492 [Multi-domain] Cd Length: 29 Bit Score: 38.51 E-value: 3.54e-04
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
616-979 |
3.75e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 616 QLSGLGPAGISFLGNSVPVSIETELMMEQVKEH---YEDLRTQLETKVNHYEREIAALKRNFEKERKDMEQARRREVSVL 692
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 693 EGQKADLEELHKKSQEVIWGLQEQLQDTaHDPEPErMGLAPCCTQALCGLALRHQSHLRQIRLEfhrLSEENAllknDLG 772
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKLLADL-HKREKE-LSLEKEQNKRLWDRDTGNSITIDHLRRE---LDDRNM----EVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 773 RVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNdrvlqlgQEASTHQAQSEEHRVTIQLLT 852
Cdd:pfam15921 430 RLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV-------EELTAKKMTLESSERTVSDLT 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 853 QSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGqvqgahLRLRQAQAQHSQEV-RQLQEQMSR 931
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA------LKLQMAEKDKVIEIlRQQIENMTQ 576
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622839308 932 LVPQD-RVAELQRL--LSLQGEQAGRRLDAQ-----REEHEKQLKATEERVEEAEM 979
Cdd:pfam15921 577 LVGQHgRTAGAMQVekAQLEKEINDRRLELQefkilKDKKDAKIRELEARVSDLEL 632
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
498-899 |
3.83e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 498 RLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKDLEfvlkdklepqsaELLAQEERFAAVLKEYELK 577
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE------------QLEQEEEKLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 578 CRDLQDRNDELQAELEGLWARLPknqhspswspggcrrqlsglgpagisflgnsvpvsiETELMMEQVKEHYEDLrtqlE 657
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIE------------------------------------ELEEDLHKLEEALNDL----E 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 658 TKVNHYE-REIAALKRNFEKERKDMEQARRREVSVLEGQKADLEELHKKSQEviwgLQEQLQDTAHDPEPERmglapcct 736
Cdd:TIGR02169 786 ARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE----LQEQRIDLKEQIKSIE-------- 853
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 737 qalcglalrhqshlrqirlefhrlsEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNY 816
Cdd:TIGR02169 854 -------------------------KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 817 KDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSdQIQKLKVELECLN-------QEYQSLQLS 889
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQA-ELQRVEEEIRALEpvnmlaiQEYEEVLKR 987
|
410
....*....|...
gi 1622839308 890 QSELT---QTLEE 899
Cdd:TIGR02169 988 LDELKekrAKLEE 1000
|
|
| EF-hand_6 |
pfam13405 |
EF-hand domain; |
257-282 |
5.28e-04 |
|
EF-hand domain;
Pssm-ID: 463869 [Multi-domain] Cd Length: 30 Bit Score: 38.31 E-value: 5.28e-04
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
551-990 |
5.37e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 551 DKLEPQSAELLAQEERFAAV---LKEYELKCRDLQDRNDELQAELEGLwaRLPKNQHSPSWSPGGCRRQLSGLGPAgisf 627
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELqeeLEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEALEAELAELPER---- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 628 lgnsvpvsietelmMEQVKEHYEDLRtQLETKVNHYEREIAALKRNFEKERKDMEQARRREVSVLEGQKADLEELHKKSQ 707
Cdd:COG4717 148 --------------LEELEERLEELR-ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 708 EVIWGLQEQLQDTAHDPEPERMGLAPCCTQ--------------ALCGLALRHQSHLRQIRLE----------FHRLSEE 763
Cdd:COG4717 213 EELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaALLALLGLGGSLLSLILTIagvlflvlglLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 764 NALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEE 843
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 844 HRVTIQLLTQSLEEVAcSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESqgQVQGAHLRLRQAQAQHSQEVR 923
Cdd:COG4717 373 AALLAEAGVEDEEELR-AALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELE 449
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622839308 924 QLQEQMSRLVpqdrvaelQRLLSLQGEQAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQE 990
Cdd:COG4717 450 ELREELAELE--------AELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
639-1049 |
5.94e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 639 ELMMEQVKEHYEDLR--TQLETKVNHYEREIAALKRNFE--KERKDMEQARRREVSVLEGQKADLEELHKKSQEVIWGLQ 714
Cdd:PRK03918 193 ELIKEKEKELEEVLReiNEISSELPELREELEKLEKEVKelEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 715 EQLQDTAHDpepermglapcctqalcglaLRHQSHLRQIRLEFHRLSEenalLKNDLGRVRQELEAAESTHNAQRKEIEV 794
Cdd:PRK03918 273 KEIEELEEK--------------------VKELKELKEKAEEYIKLSE----FYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 795 LKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVlQLGQEASTHQAQSEEHRVTIQLLTqsleevacsgqqqsdqIQKLKV 874
Cdd:PRK03918 329 RIKELEEKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTGLT----------------PEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 875 ELECLNQEYQSLQLSQSELTQ---TLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLlslqgEQ 951
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITArigELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRI-----EK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 952 AGRRLDAQREEHEKQLKATEERVEEAEMILKNMEML-----LQEKVDEL-KEQFEKNTKSDLLLKELYVENAHLVRALQA 1025
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqlkeLEEKLKKYnLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420
....*....|....*....|....
gi 1622839308 1026 TEEKQRGAEKQSRILEEKVRALNK 1049
Cdd:PRK03918 547 ELEKLEELKKKLAELEKKLDELEE 570
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
643-1050 |
6.00e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 643 EQVKEHYEDLRTQLETKVNHYEREIAALKRNFEKERKDMEQARRREVSVLEGQKaDLEELHKKSQEViwGLQEQLQDTAH 722
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK-KADAAKKKAEEK--KKADEAKKKAE 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 723 DPEPERMGLAPCCTQALCGLALRHQSHLRQIRLEFHRLSEEnallKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKA 802
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 803 CSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEAS-THQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKvELECLNQ 881
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD-ELKKAEE 1556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 882 EYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRL-VPQDRVAELQRLlslQGEQAgRRLDAQR 960
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkAEEAKKAEEAKI---KAEEL-KKAEEEK 1632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 961 EEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQFEKNTKSDLLLKElYVENAHLVRALQATEEKQRGAEKQSRIL 1040
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA-EEDEKKAAEALKKEAEEAKKAEELKKKE 1711
|
410
....*....|
gi 1622839308 1041 EEKVRALNKL 1050
Cdd:PTZ00121 1712 AEEKKKAEEL 1721
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
649-1049 |
6.75e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 649 YEDLRTQLETKVNHYEREIAALKRnFEKERKDMEQARRREvsvlegqKADLEELHKKSQEVIWGLQEQLQDTAHDPEPER 728
Cdd:PTZ00121 1208 AEEERKAEEARKAEDAKKAEAVKK-AEEAKKDAEEAKKAE-------EERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 729 MGLAPCCTQALCGLALRHQSHLRQI-----RLEFHRLSEEnalLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKAC 803
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKKAEEKKKAdeakkKAEEAKKADE---AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 804 SEMEVLTRQNQNYKDQLSQLNDRVLQLGQEAStHQAQSEEHRVTIQLLTQSLEEV--ACSGQQQSDQIQKLKVELEclnq 881
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-EKKKADEAKKKAEEDKKKADELkkAAAAKKKADEAKKKAEEKK---- 1431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 882 eyqslqlSQSELTQTLEESQgqvQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRllslQGEQAGRRLDAQRE 961
Cdd:PTZ00121 1432 -------KADEAKKKAEEAK---KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK----KADEAKKKAEEAKK 1497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 962 EHEKQLKATEERvEEAEMILKNMEmllQEKVDELKEQFEKNtKSDLLLKELYVENAHLVRALQATE--EKQRGAEKQSRI 1039
Cdd:PTZ00121 1498 KADEAKKAAEAK-KKADEAKKAEE---AKKADEAKKAEEAK-KADEAKKAEEKKKADELKKAEELKkaEEKKKAEEAKKA 1572
|
410
....*....|
gi 1622839308 1040 LEEKVRALNK 1049
Cdd:PTZ00121 1573 EEDKNMALRK 1582
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
675-1013 |
7.91e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 675 EKERKDMEQARRREVSvlEGQKADLEELHKksQEVIWGLQEQLQdTAHDPEPERMGLAPcctqalcglALRHQSHLRQ-- 752
Cdd:pfam17380 304 EKEEKAREVERRRKLE--EAEKARQAEMDR--QAAIYAEQERMA-MERERELERIRQEE---------RKRELERIRQee 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 753 IRLEFHRLSEENALL-----KNDlgRVRQELEAAesthnaqrKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRV 827
Cdd:pfam17380 370 IAMEISRMRELERLQmerqqKNE--RVRQELEAA--------RKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 828 LQLGQEASTHQAQSEEhrvtiQLLTQSLEEVacsgQQQSDQIQKLKVELEclnQEYQSLQLSQSELTQTLEESQGQVQGA 907
Cdd:pfam17380 440 LEEERAREMERVRLEE-----QERQQQVERL----RQQEEERKRKKLELE---KEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 908 HLRLRQAQAQHSQEVRQLQEQMSRlVPQDRVAELQRLLSLQGEQagrrldaQREEHEKQLKATEERvEEAEMILKNMEML 987
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKAIYE-EERRREAEEERRKQQEMEE-------RRRIQEQMRKATEER-SRLEAMEREREMM 578
|
330 340
....*....|....*....|....*.
gi 1622839308 988 LQEKVDELKEQFEKNTKSDLLLKELY 1013
Cdd:pfam17380 579 RQIVESEKARAEYEATTPITTIKPIY 604
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-882 |
7.95e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 7.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 396 QAALACYHQELSYQQGQVEQLVRERDKARQDLERAEKRNLEF-VKEMDDCHSALEQLTEKK--IKHLEQGYRERLSLLRS 472
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELeeRERRRARLEALLAALGL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 473 EVEAERELFWEQAHRQRAALEwdvgRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERL--------------- 537
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLE----ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRksniparllalrdal 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 538 --ALKL-QKDLEFV-----LKDK-----------LEPQSAELLAQEERFAAVLKEYE----------LKCRDLQDRNDEL 588
Cdd:COG4913 450 aeALGLdEAELPFVgelieVRPEeerwrgaiervLGGFALTLLVPPEHYAAALRWVNrlhlrgrlvyERVRTGLPDPERP 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 589 QAELEGLWARLpknqhspSWSPGGCRRQLSGLgpagisfLGNSVPV--------------SIETELMMEQVKEHYE-DLR 653
Cdd:COG4913 530 RLDPDSLAGKL-------DFKPHPFRAWLEAE-------LGRRFDYvcvdspeelrrhprAITRAGQVKGNGTRHEkDDR 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 654 TQL----------ETKVNHYEREIAALKRNFEKERKDMEQARRrEVSVLEGQKADLEELhkksQEVIWglqeQLQDTAhd 723
Cdd:COG4913 596 RRIrsryvlgfdnRAKLAALEAELAELEEELAEAEERLEALEA-ELDALQERREALQRL----AEYSW----DEIDVA-- 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 724 pepermglapcctqalcglalRHQSHLRQIRLEFHRLSEENAllknDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKac 803
Cdd:COG4913 665 ---------------------SAEREIAELEAELERLDASSD----DLAALEEQLEELEAELEELEEELDELKGEIGR-- 717
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622839308 804 semevLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVAcsgQQQSDQIQKLKVELECLNQE 882
Cdd:COG4913 718 -----LEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR---ENLEERIDALRARLNRAEEE 788
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
405-1001 |
9.64e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 9.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 405 ELSYQQGQVEQLVRERDKARQDLERAEKRNLEFVKEMDDCHSALEQLtEKKIKHLEqgyrERLSLLRSEVEAERELFWEq 484
Cdd:PRK03918 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIREL-EERIEELK----KEIEELEEKVKELKELKEK- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 485 ahrqraALEWDvgRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKdlefvLKDKLEpqsaELLAQE 564
Cdd:PRK03918 292 ------AEEYI--KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE-----LKKKLK----ELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 565 ERFAAVLKEYElKCRDLQDRNDELQAELEGLwarlpknqhspswSPGGCRRQLSGLgpagisflgnsvpvsietelmmEQ 644
Cdd:PRK03918 355 EELEERHELYE-EAKAKKEELERLKKRLTGL-------------TPEKLEKELEEL----------------------EK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 645 VKEHYEDLRTQLETKVNHYEREIAALKRNFEK------------------ERKDMEQARRREVSVLEGQKADLEELHKKS 706
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelteeHRKELLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 707 QEVIWGLQEQLQDtahdpEPErmglapcctqalcglALRHQSHLRQIRLEFHRLSEENallKNDLGRVRQELEAAESTHN 786
Cdd:PRK03918 479 RKELRELEKVLKK-----ESE---------------LIKLKELAEQLKELEEKLKKYN---LEELEKKAEEYEKLKEKLI 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 787 AQRKEIEVLKKDKEKAC---SEMEVLTRQNQNYKDQLSQLNDRVLQLGQEAsthqaqSEEHRVTIQLLTQSLEEVAcsgq 863
Cdd:PRK03918 536 KLKGEIKSLKKELEKLEelkKKLAELEKKLDELEEELAELLKELEELGFES------VEELEERLKELEPFYNEYL---- 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 864 qqsdQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQE-VRQLQEQMSRLvpqdrVAELQ 942
Cdd:PRK03918 606 ----ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEeYEELREEYLEL-----SRELA 676
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622839308 943 RLLSlQGEQAGRRLDAQREEHEKqLKATEERVEEAEMILKNMEMLLqEKVDELKEQFEK 1001
Cdd:PRK03918 677 GLRA-ELEELEKRREEIKKTLEK-LKEELEEREKAKKELEKLEKAL-ERVEELREKVKK 732
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
402-595 |
9.65e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 9.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 402 YHQELSYQQGQVEQLVRERDKARQDLERAEKRNLEFVKEMDDCHSALEQLtEKKIKHLE---QGYRERLSLLRSEVEA-E 477
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV-KSELKELEariEELEEDLHKLEEALNDlE 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 478 REL---FWEQAHRQRAALEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEklsdsERLALKLQKDLEFVLKDKLE 554
Cdd:TIGR02169 786 ARLshsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-----QRIDLKEQIKSIEKEIENLN 860
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1622839308 555 PQSAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGL 595
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
811-998 |
1.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 811 RQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEhrvtIQLLTQSLEEVACSGQQQSDQIQKLKVELECLN--QEYQSLQL 888
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 889 SQSELTQTLEESQGQVQgAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQagRRLDAQREEHEKQLK 968
Cdd:COG4717 140 ELAELPERLEELEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL--EELQQRLAELEEELE 216
|
170 180 190
....*....|....*....|....*....|..
gi 1622839308 969 ATEERVEEAEMILKNME--MLLQEKVDELKEQ 998
Cdd:COG4717 217 EAQEELEELEEELEQLEneLEAAALEERLKEA 248
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
798-1044 |
1.30e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.97 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 798 DKEKACSEMEVLTRQNQNYKDQLSQLNDRvLQLGQEASTHQAQSEEHrvtiqlLTQSLEEVACSGQQQSDQIQKLKVELE 877
Cdd:PLN02939 157 DLEKILTEKEALQGKINILEMRLSETDAR-IKLAAQEKIHVEILEEQ------LEKLRNELLIRGATEGLCVHSLSKELD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 878 CLNQEYQSLQlsqsELTQTLEESQGQVQGAHLRLRQAQAQHS---QEVRQL-------QEQMSRLVPQ------DRVAEL 941
Cdd:PLN02939 230 VLKEENMLLK----DDIQFLKAELIEVAETEERVFKLEKERSlldASLRELeskfivaQEDVSKLSPLqydcwwEKVENL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 942 QRLLSL---QGEQAGRRLDaQREEHEKQLKATEERVEEAEMILKNMEM--LLQEKVDELKEQFEKNTKSDLLLKELYven 1016
Cdd:PLN02939 306 QDLLDRatnQVEKAALVLD-QNQDLRDKVDKLEASLKEANVSKFSSYKveLLQQKLKLLEERLQASDHEIHSYIQLY--- 381
|
250 260
....*....|....*....|....*...
gi 1622839308 1017 AHLVRALQATEEKQRgAEKQSRILEEKV 1044
Cdd:PLN02939 382 QESIKEFQDTLSKLK-EESKKRSLEHPA 408
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
353-1007 |
1.34e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 353 QEGIQNGREILQSLDFSVDEKVNlleltwALDNELMTVDSAVQQAAL---ACYHQELSYQQGQVEQLVRERDKA---RQD 426
Cdd:pfam12128 282 QETSAELNQLLRTLDDQWKEKRD------ELNGELSAADAAVAKDRSeleALEDQHGAFLDADIETAAADQEQLpswQSE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 427 LE----------------------RAEKRNLEFVKEMDDCHSALEQLTEKKIKHL---EQGYRERLSLLRSEVEAERELF 481
Cdd:pfam12128 356 LEnleerlkaltgkhqdvtakynrRRSKIKEQNNRDIAGIKDKLAKIREARDRQLavaEDDLQALESELREQLEAGKLEF 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 482 WEQAHRQRAALEWDVGRL---QAEEAGL-------------REKLTLALKENSRLQKEIV-------EVAEKLSDSERLA 538
Cdd:pfam12128 436 NEEEYRLKSRLGELKLRLnqaTATPELLlqlenfderieraREEQEAANAEVERLQSELRqarkrrdQASEALRQASRRL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 539 LKLQKDLEfVLKDKLEPQSAELLAQEERFAAVLKEY-------ELKCR-DLQDRNDELQAE----LEGLWARLPKNQHsP 606
Cdd:pfam12128 516 EERQSALD-ELELQLFPQAGTLLHFLRKEAPDWEQSigkvispELLHRtDLDPEVWDGSVGgelnLYGVKLDLKRIDV-P 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 607 SWspggcrrqlsglgpagisflgnsvpVSIETELMME--QVKEHYEDLRT---QLETKVNHYEREIAALKRNFEKERKDM 681
Cdd:pfam12128 594 EW-------------------------AASEEELRERldKAEEALQSAREkqaAAEEQLVQANGELEKASREETFARTAL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 682 EQARRREVSVLEGQKADLEELHKKSQEVIWGLQEQLQDTAHDPEPERMGLapcctQALCGLALRHQSHLRQIRLEFHRLS 761
Cdd:pfam12128 649 KNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKH-----QAWLEEQKEQKREARTEKQAYWQVV 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 762 EENalLKNDLGRVRQELEAAESTHNAQRKEIEvlkkdkekacsemevltRQNQNYKDQLSQLNDRVLQLGQEasthqaqs 841
Cdd:pfam12128 724 EGA--LDAQLALLKAAIAARRSGAKAELKALE-----------------TWYKRDLASLGVDPDVIAKLKRE-------- 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 842 eehrvtIQLLTQSLEEVACSGQ-----------QQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLR 910
Cdd:pfam12128 777 ------IRTLERKIERIAVRRQevlryfdwyqeTWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKA 850
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 911 LRQAQAQHSQEVRQLQEQMSRLvpqdrvaelqrllslqgeqAGRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQE 990
Cdd:pfam12128 851 SEKQQVRLSENLRGLRCEMSKL-------------------ATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKK 911
|
730
....*....|....*..
gi 1622839308 991 KVDELKEQFEKNTKSDL 1007
Cdd:pfam12128 912 YVEHFKNVIADHSGSGL 928
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
745-982 |
1.88e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 745 RHQSHLRQIRLEFHRLSEEnalLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLN 824
Cdd:pfam07888 59 KEKERYKRDREQWERQRRE---LESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 825 DRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQV 904
Cdd:pfam07888 136 EDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTI 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 905 QGAHLRLRQAQaQHSQEVRQLQEQMSRLvpQDRVAELQRLLSLQGEQ----AGRRLDAQREEHEKQLKATEERVEEAEMI 980
Cdd:pfam07888 216 TTLTQKLTTAH-RKEAENEALLEELRSL--QERLNASERKVEGLGEElssmAAQRDRTQAELHQARLQAAQLTLQLADAS 292
|
..
gi 1622839308 981 LK 982
Cdd:pfam07888 293 LA 294
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
781-978 |
2.11e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 781 AESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVAC 860
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 861 SGQQQSDQIQKLKVELEclNQEYQSLqLSQSELTQTLEESQG----QVQGAHLRLRQAQAQHSQEVRQLQEQMSRLvpQD 936
Cdd:COG3883 94 ALYRSGGSVSYLDVLLG--SESFSDF-LDRLSALSKIADADAdlleELKADKAELEAKKAELEAKLAELEALKAEL--EA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1622839308 937 RVAELQRLLSlQGEQAGRRLDAQREEHEKQLKATEERVEEAE 978
Cdd:COG3883 169 AKAELEAQQA-EQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| EFh_parvalbumin_like |
cd16251 |
EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes ... |
218-279 |
2.66e-03 |
|
EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes alpha- and beta-parvalbumins, and a group of uncharacterized calglandulin-like proteins. Parvalbumins are small, acidic, cytosolic EF-hand-containing Ca2+-buffer and Ca2+ transporter/shuttle proteins belonging to EF-hand superfamily. They are expressed by vertebrates in fast-twitch muscle cells, specific neurons of the central and peripheral nervous system, sensory cells of the mammalian auditory organ (Corti's cell), and some other cells, and characterized by the presence of three consecutive EF-hand motifs (helix-loop-helix) called AB, CD, and EF, but only CD and EF can chelate metal ions, such as Ca2+ and Mg2+. Thus, they may play an additional role in Mg2+ handling. Moreover, parvalbumins represent one of the major animal allergens. In metal-bound states, parvalbumins possess a rigid and stable tertiary structure and display strong allergenicity. In contrast, the metal-free parvalbumins are intrinsically disordered, and the loss of metal ions results in a conformational change that decreases their IgE binding capacity. Furthermore, parvalbumins have been widely used as a neuronal marker for a variety of functional brain systems. They also function as a Ca2+ shuttle transporting Ca2+ from troponin-C (TnC) to the sarcoplasmic reticulum (SR) Ca2+ pump during muscle relaxation. Thus they may facilitate myocardial relaxation and play important roles in cardiac diastolic dysfunction. Parvalbumins consists of alpha- and beta- sublineages, which can be distinguished on the basis of isoelectric point (pI > 5 for alpha; pI
Pssm-ID: 319994 [Multi-domain] Cd Length: 101 Bit Score: 38.28 E-value: 2.66e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622839308 218 ESQIRGMWEELGVGSRGHLSEQELAVVCQSVGL--RGLEKEELEDLFNKLDQDGDGKVSLEEFQ 279
Cdd:cd16251 33 EDQIKKVFQILDKDKSGFIEEEELKYILKGFSIagRDLTDEETKALLAAGDTDGDGKIGVEEFA 96
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
754-1013 |
2.98e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 754 RLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLkkDKEKACSEMEVLTRQN-----QNYKDQLSQLNDRVL 828
Cdd:COG3096 381 EARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQAL--EKARALCGLPDLTPENaedylAAFRAKEQQATEEVL 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 829 QLGQEASTHQAQSEEHRVTIQLLTQSLEEV---------------ACSGQQQSDQIQKLKVELECLNQEYQSLQ------ 887
Cdd:COG3096 459 ELEQKLSVADAARRQFEKAYELVCKIAGEVersqawqtarellrrYRSQQALAQRLQQLRAQLAELEQRLRQQQnaerll 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 888 --LSQS---------ELTQTLEESQGQVQGAHLRLRQAQA------QHSQEVRQLQEQMSRLVPQDRVAE--LQRLLSLQ 948
Cdd:COG3096 539 eeFCQRigqqldaaeELEELLAELEAQLEELEEQAAEAVEqrselrQQLEQLRARIKELAARAPAWLAAQdaLERLREQS 618
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622839308 949 GEQ--AGRRLDAQRE---EHEKQLKATEERVEEA-EMILKNMEMLLQEKVDE------LKEQFekntkSDLLLKELY 1013
Cdd:COG3096 619 GEAlaDSQEVTAAMQqllEREREATVERDELAARkQALESQIERLSQPGGAEdprllaLAERL-----GGVLLSEIY 690
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
747-928 |
3.26e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 747 QSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLN-- 824
Cdd:COG3883 29 QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDvl 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 825 ----------DRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVacsgQQQSDQIQKLKVELECLNQEYQSLQLSQSELT 894
Cdd:COG3883 109 lgsesfsdflDRLSALSKIADADADLLEELKADKAELEAKKAEL----EAKLAELEALKAELEAAKAELEAQQAEQEALL 184
|
170 180 190
....*....|....*....|....*....|....
gi 1622839308 895 QTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQ 928
Cdd:COG3883 185 AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
755-1008 |
3.47e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 755 LEFHRLSEENALLKNdlgRVRQEleaaesthNAQRKEIEVLKKD-KEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQE 833
Cdd:PHA02562 160 LDISVLSEMDKLNKD---KIREL--------NQQIQTLDMKIDHiQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEE 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 834 ASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQEYQSLQLSQS--ELTQTLEESQGQVQGAHLRL 911
Cdd:PHA02562 229 AKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQQISEGPDRITKIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 912 RQAQAQHSQE---VRQLQEQMSRLVPQDRVA-ELQRLLSLQgEQAGRRLDAQREEHEKQL-KATEERV---EEAEMILKN 983
Cdd:PHA02562 309 KELQHSLEKLdtaIDELEEIMDEFNEQSKKLlELKNKISTN-KQSLITLVDKAKKVKAAIeELQAEFVdnaEELAKLQDE 387
|
250 260
....*....|....*....|....*
gi 1622839308 984 MEMLLQEKVDELKEQFEKNTKSDLL 1008
Cdd:PHA02562 388 LDKIVKTKSELVKEKYHRGIVTDLL 412
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
742-1043 |
3.51e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 742 LALRHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDkekacsemevlTRQNQNYKDQLS 821
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQ-----------TQQSHAYLTQKR 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 822 QLNDRVLQLGQEASTHQAQSEE-------------------HRVTIQLLTQSLEEVACSGQQQSDQIQKLKVELECLNQE 882
Cdd:TIGR00618 250 EAQEEQLKKQQLLKQLRARIEElraqeavleetqerinrarKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 883 YQSLQLSQSELTQTLEESQgQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQAGRRLDAQREE 962
Cdd:TIGR00618 330 RAAHVKQQSSIEEQRRLLQ-TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 963 HEKQLKAT-EERVEEAEMILKNMEMLLQEKVDELKEQFEKNTksdllLKELYVENAHLVRALQAT-EEKQRGAEKQSRIL 1040
Cdd:TIGR00618 409 QATIDTRTsAFRDLQGQLAHAKKQQELQQRYAELCAAAITCT-----AQCEKLEKIHLQESAQSLkEREQQLQTKEQIHL 483
|
...
gi 1622839308 1041 EEK 1043
Cdd:TIGR00618 484 QET 486
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
639-1049 |
3.67e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 639 ELMMEQVKEHYEDLRTQLETKVNHYEREIAALKRNFEKERKDMEQARRREVSVLEGQKADLeelhKKSQEVIWGLQEQLQ 718
Cdd:pfam12128 257 ELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAV----AKDRSELEALEDQHG 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 719 DTAHDPEPERMGlapcctqalcglalrHQSHLRQIRLEFHRLSEENALLKNDLGRVRQELEAAESTHNAQRK-EIEVLKK 797
Cdd:pfam12128 333 AFLDADIETAAA---------------DQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNrDIAGIKD 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 798 DKEKACSEMEVLTRQNQNYKDQL-----SQLNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQsDQIQKL 872
Cdd:pfam12128 398 KLAKIREARDRQLAVAEDDLQALeselrEQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD-ERIERA 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 873 KVELECLNQEYQSLQlsqSELTQtleeSQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQD---------------- 936
Cdd:pfam12128 477 REEQEAANAEVERLQ---SELRQ----ARKRRDQASEALRQASRRLEERQSALDELELQLFPQAgtllhflrkeapdweq 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 937 ---RVAELQRLL-----------SLQGEQA--GRRLDAQREEH------EKQLKATEERVEEA-------------EMIL 981
Cdd:pfam12128 550 sigKVISPELLHrtdldpevwdgSVGGELNlyGVKLDLKRIDVpewaasEEELRERLDKAEEAlqsarekqaaaeeQLVQ 629
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622839308 982 KNMEMLLQEKVDELKEQFEKNtkSDLLLKELYVENAHLVRAL-QATEEKQRGAEKQSRILEEKVRALNK 1049
Cdd:pfam12128 630 ANGELEKASREETFARTALKN--ARLDLRRLFDEKQSEKDKKnKALAERKDSANERLNSLEAQLKQLDK 696
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
834-1028 |
4.09e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 834 ASTHQAQSEEHRVTIQLLTQSLEEVACSGQQQSDQIQKLKVE--LECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRL 911
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 912 RQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQAGR---------RLDAQREEHEKQLKATEERVEEAemiLK 982
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARytpnhpdviALRAQIAALRAQLQQEAQRILAS---LE 319
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1622839308 983 NMEMLLQEKVDELKEQFEKNTKSDLLLKELYVENAHLVRALQATEE 1028
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| EFh |
cd00051 |
EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal ... |
257-292 |
4.67e-03 |
|
EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Pssm-ID: 238008 [Multi-domain] Cd Length: 63 Bit Score: 36.37 E-value: 4.67e-03
10 20 30
....*....|....*....|....*....|....*.
gi 1622839308 257 ELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALLLE 292
Cdd:cd00051 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEE 36
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
465-1049 |
5.45e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 465 ERLSLLRSEVEAERELFWEQaHRQRaaLEWDVGRLQAEEAGLREKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKD 544
Cdd:pfam15921 245 DQLEALKSESQNKIELLLQQ-HQDR--IEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 545 LEfvlkdklepQSAELLAQEERFAAvlKEYELKCRDLQDRNDELQAELEGlwARLPKNQHSPSwsPGGCRRQLSGLgpag 624
Cdd:pfam15921 322 LE---------STVSQLRSELREAK--RMYEDKIEELEKQLVLANSELTE--ARTERDQFSQE--SGNLDDQLQKL---- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 625 isfLGNSVPVSIETELMMEQVKEHYeDLRTQLETKVNHYEREIAalKRNFEKERKDmeqarrrevSVLEGQKADLEELHK 704
Cdd:pfam15921 383 ---LADLHKREKELSLEKEQNKRLW-DRDTGNSITIDHLRRELD--DRNMEVQRLE---------ALLKAMKSECQGQME 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 705 KSQEVIWGLQEQLQDTAhdpepermglapcctqalcGLALRHQSHLRQIRLEFHRLSEENALLKNdlgrvrQELEAAEST 784
Cdd:pfam15921 448 RQMAAIQGKNESLEKVS-------------------SLTAQLESTKEMLRKVVEELTAKKMTLES------SERTVSDLT 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 785 HNAQRKE--IEVLKKDKEKACSEMEVLTRQNQNYKDQlsqlNDRVLQLGQEASTHQAQSEEHRVTIQLLTQSLEEVACSG 862
Cdd:pfam15921 503 ASLQEKEraIEATNAEITKLRSRVDLKLQELQHLKNE----GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLV 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 863 QQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMS--RLVPQDRVAE 940
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRavKDIKQERDQL 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 941 LQRLLSLQGEqagrrLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDELKEQfeKNTksdllLKELYVENAHLV 1020
Cdd:pfam15921 659 LNEVKTSRNE-----LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT--RNT-----LKSMEGSDGHAM 726
|
570 580
....*....|....*....|....*....
gi 1622839308 1021 RALQATEEKQRGAEKQSRILEEKVRALNK 1049
Cdd:pfam15921 727 KVAMGMQKQITAKRGQIDALQSKIQFLEE 755
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
935-1058 |
6.33e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 935 QDRVAELQRLLSLQGEQAgRRLDAQREEHEKQLKATEERVEEAEMILKNMEmlLQEKVDELKEQFEKNTKSDLLLKELYV 1014
Cdd:COG4913 616 EAELAELEEELAEAEERL-EALEAELDALQERREALQRLAEYSWDEIDVAS--AEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1622839308 1015 ENAHLVRALQATEEKQRGAEKQSRILEEKVRALNKLVGRIAPAA 1058
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
508-1054 |
6.46e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 508 EKLTLALKENSRLQKEIVEVAEKLSDSERLALKLQKdlefvLKDKLEPQSAELLAQEERfaavLKEYELKCRDLQDRNDE 587
Cdd:PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVKELEE-----LKEEIEELEKELESLEGS----KRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 588 LQAELEGLWARlpknqhspswspggcRRQLSGLGPagisflgnsvpvSIETELMMEQVKEHYEDLRTQLETKVNHYEREI 667
Cdd:PRK03918 271 LKKEIEELEEK---------------VKELKELKE------------KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 668 AALKRNFEKerkdmeqarrrevsvLEGQKADLEELHKKSQEViwglqeqlqdtahdpepermglapcctqalcglaLRHQ 747
Cdd:PRK03918 324 NGIEERIKE---------------LEEKEERLEELKKKLKEL----------------------------------EKRL 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 748 SHLRqirlEFHRLSEENALLKNDLGRVRQELeaAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRV 827
Cdd:PRK03918 355 EELE----ERHELYEEAKAKKEELERLKKRL--TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 828 LQL----GQEASTHQAQSEEHRVTI-QLLTQSLEEVACSGQQQSDQIQKLKVELECLNQE--YQSLQLSQSELTQTLEES 900
Cdd:PRK03918 429 EELkkakGKCPVCGRELTEEHRKELlEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELAEQLKEL 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 901 QGQVQGAHLRLRQAQAQHSQEVRqlqeqmsrlvpqdrvaelQRLLSLQGEQAGRRLDAQR-EEHEKQLKATEERVEEAEM 979
Cdd:PRK03918 509 EEKLKKYNLEELEKKAEEYEKLK------------------EKLIKLKGEIKSLKKELEKlEELKKKLAELEKKLDELEE 570
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622839308 980 ILKNMEMLLQEKVDELKEQFEKNTKSdllLKELYVENAHLVRALQATEEKQRGAEKQSRILEEKVRALNKLVGRI 1054
Cdd:PRK03918 571 ELAELLKELEELGFESVEELEERLKE---LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
760-959 |
6.63e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 760 LSEENALLKNDLGRVRQELEAAESTHNAQRKEIEVLKKDKEKACSEMEVLTRQNQNYKDQLSQLNDRVLQLGQEASThqa 839
Cdd:COG3883 28 LQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSY--- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 840 qseehrVTIQLLTQSLEE----------VACSGQQQSDQIQKLKVELECLNQEYQSLQLSQSELTQTLEESQGQVQGAHL 909
Cdd:COG3883 105 ------LDVLLGSESFSDfldrlsalskIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622839308 910 RLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQAGRRLDAQ 959
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
684-978 |
8.00e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 684 ARRREVSVLEGQKADLEELHKKSQEVIWGLQEQLQDT------------AHDPEPERMGLAPCCTQALCGLAlRHQSHLR 751
Cdd:PRK04863 783 AREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFsrfigshlavafEADPEAELRQLNRRRVELERALA-DHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 752 QIRLEFHRLSEENALLKNDLGRVR--------QELEAAEsthnAQRKEIEVLKKD---KEKACSEMEVLTRQNQNYKDQL 820
Cdd:PRK04863 862 QQRSQLEQAKEGLSALNRLLPRLNlladetlaDRVEEIR----EQLDEAEEAKRFvqqHGNALAQLEPIVSVLQSDPEQF 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 821 SQLNDRVLQLGQEASTHQAQseehrvtIQLLTQSLEEVACSGQQQSDQIqklkvelecLNQEYQSlqlsQSELTQTLEES 900
Cdd:PRK04863 938 EQLKQDYQQAQQTQRDAKQQ-------AFALTEVVQRRAHFSYEDAAEM---------LAKNSDL----NEKLRQRLEQA 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 901 QGQVQGAHLRLRQAQAQHSQEVRQLQE-QMSRLVPQDRVAELQRLLSLQG----EQAGRRLDAQREEHEKQLKATEERVE 975
Cdd:PRK04863 998 EQERTRAREQLRQAQAQLAQYNQVLASlKSSYDAKRQMLQELKQELQDLGvpadSGAEERARARRDELHARLSANRSRRN 1077
|
...
gi 1622839308 976 EAE 978
Cdd:PRK04863 1078 QLE 1080
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
883-1040 |
8.59e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.08 E-value: 8.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 883 YQSLQLSQSELTQTLEESQGQVQGAHLRLRQAQAQHSQEVRQLQEQMSRLVPQDRVAELQRLLSLQGEQAGR--RLDAQR 960
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARaeKLDNLE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622839308 961 EEHEKQLKATEERVEEAEMILKNMEMLLQEkVDELKEQFEKNTKSDLLLKELYVENAHLVRALqaTEEKQRGAEKQSRIL 1040
Cdd:PRK12705 105 NQLEEREKALSARELELEELEKQLDNELYR-VAGLTPEQARKLLLKLLDAELEEEKAQRVKKI--EEEADLEAERKAQNI 181
|
|
| |
