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Conserved domains on  [gi|1622838769|ref|XP_028683756|]
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seizure 6-like protein isoform X6 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 622-730 7.44e-26

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.88  E-value: 7.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 622 CGGELSA-VAGVVLSPNWPEPYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 695
Cdd:cd00041     1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 696 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 730
Cdd:cd00041    81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 446-555 6.52e-22

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 91.71  E-value: 6.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 446 CGGTVHNATIGRVLSPSYPGNTNGSQFCVWTIEAPEGQKLHLHFERLSLH-----DKDRMTVHSGQTNKSALLyDSLQTE 520
Cdd:cd00041     1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 521 SVPFEgLLSEGDTIRIEFTSDQARAASTFNIRFEA 555
Cdd:cd00041    80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 739-795 9.73e-14

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 66.33  E-value: 9.73e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1622838769 739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 795
Cdd:cd00033     1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 803-861 6.37e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.32  E-value: 6.37e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 803 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVCK 861
Cdd:cd00033     1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTEN--GGWSPPPPTCE 57
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 275-382 1.41e-09

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 56.27  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 275 CSVSFSNP-EGYIDSSDYPPLPLNNfLECTYNVTVYTGYGVELQVKSVNLSEGEL-----LSIRGVDGPTLTVLANQTLL 348
Cdd:cd00041     1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1622838769 349 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 382
Cdd:cd00041    80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Sushi pfam00084
Sushi repeat (SCR repeat);
561-618 3.13e-09

Sushi repeat (SCR repeat);


:

Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 3.13e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 561 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 618
Cdd:pfam00084   1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 387-442 1.49e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


:

Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 1.49e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769  387 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 442
Cdd:smart00032   1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
PBP1 super family cl34930
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 1-234 2.20e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


The actual alignment was detected with superfamily member COG5180:

Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 41.59  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769   1 MPAARPPAAGLGGISLFLALLLGSPAA---ALERDALP--EGPYLLPS---------GALERGSPGKEHPEERLVTAPPS 66
Cdd:COG5180   111 PAAKTPELAAGALPAPAAAAALPKAKVtreATSASAGValAAALLQRSdpilakdpdGDSASTLPPPAEKLDKVLTEPRD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  67 SSQSGEVLGELELDGTVPSAHHDTPALSPLlPEEARPKHALPSKKKPPSL------KQVNSARKQLRPKATSAATVQRAG 140
Cdd:COG5180   191 ALKDSPEKLDRPKVEVKDEAQEEPPDLTGG-ADHPRPEAASSPKVDPPSTsearsrPATVDAQPEMRPPADAKERRRAAI 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 141 SQPASQ---GLGLLSSSTEKPgppgdpdpimASEEASEVPLWLDRKESA-VPTTPAPLQISPFTSQPyMAHTLPQRSESG 216
Cdd:COG5180   270 GDTPAAeppGLPVLEAGSEPQ----------SDAPEAETARPIDVKGVAsAPPATRPVRPPGGARDP-GTPRPGQPTERP 338

                         250
                  ....*....|....*...
gi 1622838769 217 EPGPDMAQEAPQEDTSPM 234
Cdd:COG5180   339 AGVPEAASDAGQPPSAYP 356
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 622-730 7.44e-26

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.88  E-value: 7.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 622 CGGELSA-VAGVVLSPNWPEPYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 695
Cdd:cd00041     1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 696 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 730
Cdd:cd00041    81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 446-555 6.52e-22

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 91.71  E-value: 6.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 446 CGGTVHNATIGRVLSPSYPGNTNGSQFCVWTIEAPEGQKLHLHFERLSLH-----DKDRMTVHSGQTNKSALLyDSLQTE 520
Cdd:cd00041     1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 521 SVPFEgLLSEGDTIRIEFTSDQARAASTFNIRFEA 555
Cdd:cd00041    80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 631-730 9.82e-19

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 82.05  E-value: 9.82e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  631 GVVLSPNWPEPYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSGPQKLYSS-T 704
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdnceyDYVEIYDGPSASSPLLGRFCGSEAPPPVISSsS 80

                           90       100
                   ....*....|....*....|....*.
gi 1622838769  705 PDLTIQFHSDPAglifGKGQGFIMNY 730
Cdd:smart00042  81 NSLTLTFVSDSS----VQKRGFSARY 102
CUB pfam00431
CUB domain;
622-717 4.11e-18

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 80.80  E-value: 4.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 622 CGGELSAVAGVVLSPNWPEPYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSG 696
Cdd:pfam00431   1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHdecgyDYVEIRDGPSASSPLLGRFCGSGI 80

                          90       100
                  ....*....|....*....|.
gi 1622838769 697 PQKLYSSTPDLTIQFHSDPAG 717
Cdd:pfam00431  81 PEDIVSSSNQMTIKFVSDASV 101
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 739-795 9.73e-14

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 66.33  E-value: 9.73e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1622838769 739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 795
Cdd:cd00033     1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 456-553 9.86e-14

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 67.80  E-value: 9.86e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  456 GRVLSPSYPGNTNGSQFCVWTIEAPEGQKLHLHFERLSL--HD---KDRMTVHSGQTNKSALL--YDSLQTESVPFEgll 528
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLesSDnceYDYVEIYDGPSASSPLLgrFCGSEAPPPVIS--- 77

                           90       100
                   ....*....|....*....|....*
gi 1622838769  529 SEGDTIRIEFTSDQARAASTFNIRF 553
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 739-794 1.16e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 66.40  E-value: 1.16e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1622838769  739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 794
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CUB pfam00431
CUB domain;
446-553 6.84e-13

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 65.78  E-value: 6.84e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 446 CGGTVHNATiGRVLSPSYPGNTNGSQFCVWTIEAPEGQKLHLHFERLSLHD-----KDRMTVHSGQTNKSALL--Ydslq 518
Cdd:pfam00431   1 CGGVLTDSS-GSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhdecgYDYVEIRDGPSASSPLLgrF---- 75

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 519 TESVPFEGLLSEGDTIRIEFTSDQARAASTFNIRF 553
Cdd:pfam00431  76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
Sushi pfam00084
Sushi repeat (SCR repeat);
739-794 1.38e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 63.29  E-value: 1.38e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1622838769 739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 794
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 803-861 6.37e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.32  E-value: 6.37e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 803 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVCK 861
Cdd:cd00033     1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTEN--GGWSPPPPTCE 57
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 739-873 2.28e-11

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 65.44  E-value: 2.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 739 CSDLPEIQNGWKTTSHTELvrGARITYQCDPGYDIVGSDTLTCQW----DLSWSSDPPFCEkteeSLACDNPGLPENGYQ 814
Cdd:PHA02927   86 CPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYQLIGESKSYCELgstgSMVWNPEAPICE----SVKCQSPPSISNGRH 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 815 ILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGQpshWNGPlPVCKVAEAAAETSLEG 873
Cdd:PHA02927  160 NGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGE---WSDP-PTCQIVKCPHPTISNG 214
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 803-860 5.68e-11

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.69  E-value: 5.68e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769  803 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVC 860
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLEN--GTWSPPPPTC 56
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 275-382 1.41e-09

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 56.27  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 275 CSVSFSNP-EGYIDSSDYPPLPLNNfLECTYNVTVYTGYGVELQVKSVNLSEGEL-----LSIRGVDGPTLTVLANQTLL 348
Cdd:cd00041     1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1622838769 349 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 382
Cdd:cd00041    80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Sushi pfam00084
Sushi repeat (SCR repeat);
561-618 3.13e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 3.13e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 561 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 618
Cdd:pfam00084   1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 561-618 7.71e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 52.53  E-value: 7.71e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769  561 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 618
Cdd:smart00032   1 CPPPPdIENGTVTSSSGTYSYGDTVTYSCDPGYTL-IGSSTITCLE--NGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 561-619 2.22e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 51.31  E-value: 2.22e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622838769 561 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECI-NVRdpyWNDTEPLCR 619
Cdd:cd00033     1 CPPPPvPENGTVTGSKGSYSYGSTVTYSCNEGYTL-VGSSTITCTeNGG---WSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
803-860 9.01e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 49.42  E-value: 9.01e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 803 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCIL-GQpshWNGPLPVC 860
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEdGT---WSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 387-442 1.49e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 1.49e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769  387 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 442
Cdd:smart00032   1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 387-442 2.30e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.53  E-value: 2.30e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769 387 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCInaSKPHWSSQEPIC 442
Cdd:cd00033     1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCT--ENGGWSPPPPTC 56
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 284-380 5.90e-05

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 42.76  E-value: 5.90e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  284 GYIDSSDYPPLPLNNfLECTYNVTVYTGYGVELQVKSVNLSEGEL-----LSIRgvDGPTLTVLANQTL---LVEGQVIR 355
Cdd:smart00042   1 GTITSPNYPQSYPNN-LDCVWTIRAPPGYRIELQFTDFDLESSDNceydyVEIY--DGPSASSPLLGRFcgsEAPPPVIS 77

                           90       100
                   ....*....|....*....|....*
gi 1622838769  356 SPTNTISVYFRTFQDDGLGTFQLHY 380
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 1-234 2.20e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 41.59  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769   1 MPAARPPAAGLGGISLFLALLLGSPAA---ALERDALP--EGPYLLPS---------GALERGSPGKEHPEERLVTAPPS 66
Cdd:COG5180   111 PAAKTPELAAGALPAPAAAAALPKAKVtreATSASAGValAAALLQRSdpilakdpdGDSASTLPPPAEKLDKVLTEPRD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  67 SSQSGEVLGELELDGTVPSAHHDTPALSPLlPEEARPKHALPSKKKPPSL------KQVNSARKQLRPKATSAATVQRAG 140
Cdd:COG5180   191 ALKDSPEKLDRPKVEVKDEAQEEPPDLTGG-ADHPRPEAASSPKVDPPSTsearsrPATVDAQPEMRPPADAKERRRAAI 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 141 SQPASQ---GLGLLSSSTEKPgppgdpdpimASEEASEVPLWLDRKESA-VPTTPAPLQISPFTSQPyMAHTLPQRSESG 216
Cdd:COG5180   270 GDTPAAeppGLPVLEAGSEPQ----------SDAPEAETARPIDVKGVAsAPPATRPVRPPGGARDP-GTPRPGQPTERP 338

                         250
                  ....*....|....*...
gi 1622838769 217 EPGPDMAQEAPQEDTSPM 234
Cdd:COG5180   339 AGVPEAASDAGQPPSAYP 356
PHA03247 PHA03247
large tegument protein UL36; Provisional
 6-233 4.48e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 4.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769    6 PPAAGLGGISLFLALLLGSPAAALERDALPEGPYLLPSGALERGSPGKEHPEERlVTAPPSSSQSGEVLGELELDGTVPS 85
Cdd:PHA03247  2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP-AAGPPRRLTRPAVASLSESRESLPS 2800

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769   86 AHHDTPALSPLL-PEEARPKHALPSKKKPPSlkqvnsarkqlrPKATSAATVQRAGSQPASQGLGLLSSSTEKPGPPGDP 164
Cdd:PHA03247  2801 PWDPADPPAAVLaPAAALPPAASPAGPLPPP------------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS 2868

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769  165 DPIMASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYMAHTLPQRSESGEPGPDMAQEAPQEDTSP 233
Cdd:PHA03247  2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
Sushi pfam00084
Sushi repeat (SCR repeat);
387-442 7.43e-03

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 35.55  E-value: 7.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769 387 CNFPRRPDSGDVTV-MDLHS-GGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 442
Cdd:pfam00084   1 CPPPPDIPNGKVSAtKNEYNyGASVSYECDPGYRLVGSPTITCQEDGT--WSPPFPEC 56
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 622-730 7.44e-26

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.88  E-value: 7.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 622 CGGELSA-VAGVVLSPNWPEPYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 695
Cdd:cd00041     1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 696 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 730
Cdd:cd00041    81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 446-555 6.52e-22

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 91.71  E-value: 6.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 446 CGGTVHNATIGRVLSPSYPGNTNGSQFCVWTIEAPEGQKLHLHFERLSLH-----DKDRMTVHSGQTNKSALLyDSLQTE 520
Cdd:cd00041     1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 521 SVPFEgLLSEGDTIRIEFTSDQARAASTFNIRFEA 555
Cdd:cd00041    80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 631-730 9.82e-19

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 82.05  E-value: 9.82e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  631 GVVLSPNWPEPYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSGPQKLYSS-T 704
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdnceyDYVEIYDGPSASSPLLGRFCGSEAPPPVISSsS 80

                           90       100
                   ....*....|....*....|....*.
gi 1622838769  705 PDLTIQFHSDPAglifGKGQGFIMNY 730
Cdd:smart00042  81 NSLTLTFVSDSS----VQKRGFSARY 102
CUB pfam00431
CUB domain;
622-717 4.11e-18

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 80.80  E-value: 4.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 622 CGGELSAVAGVVLSPNWPEPYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSG 696
Cdd:pfam00431   1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHdecgyDYVEIRDGPSASSPLLGRFCGSGI 80

                          90       100
                  ....*....|....*....|.
gi 1622838769 697 PQKLYSSTPDLTIQFHSDPAG 717
Cdd:pfam00431  81 PEDIVSSSNQMTIKFVSDASV 101
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 739-795 9.73e-14

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 66.33  E-value: 9.73e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1622838769 739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 795
Cdd:cd00033     1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 456-553 9.86e-14

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 67.80  E-value: 9.86e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  456 GRVLSPSYPGNTNGSQFCVWTIEAPEGQKLHLHFERLSL--HD---KDRMTVHSGQTNKSALL--YDSLQTESVPFEgll 528
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLesSDnceYDYVEIYDGPSASSPLLgrFCGSEAPPPVIS--- 77

                           90       100
                   ....*....|....*....|....*
gi 1622838769  529 SEGDTIRIEFTSDQARAASTFNIRF 553
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 739-794 1.16e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 66.40  E-value: 1.16e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1622838769  739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 794
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CUB pfam00431
CUB domain;
446-553 6.84e-13

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 65.78  E-value: 6.84e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 446 CGGTVHNATiGRVLSPSYPGNTNGSQFCVWTIEAPEGQKLHLHFERLSLHD-----KDRMTVHSGQTNKSALL--Ydslq 518
Cdd:pfam00431   1 CGGVLTDSS-GSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhdecgYDYVEIRDGPSASSPLLgrF---- 75

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1622838769 519 TESVPFEGLLSEGDTIRIEFTSDQARAASTFNIRF 553
Cdd:pfam00431  76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
Sushi pfam00084
Sushi repeat (SCR repeat);
739-794 1.38e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 63.29  E-value: 1.38e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1622838769 739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 794
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 803-861 6.37e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.32  E-value: 6.37e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 803 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVCK 861
Cdd:cd00033     1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTEN--GGWSPPPPTCE 57
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 739-873 2.28e-11

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 65.44  E-value: 2.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 739 CSDLPEIQNGWKTTSHTELvrGARITYQCDPGYDIVGSDTLTCQW----DLSWSSDPPFCEkteeSLACDNPGLPENGYQ 814
Cdd:PHA02927   86 CPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYQLIGESKSYCELgstgSMVWNPEAPICE----SVKCQSPPSISNGRH 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 815 ILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGQpshWNGPlPVCKVAEAAAETSLEG 873
Cdd:PHA02927  160 NGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGE---WSDP-PTCQIVKCPHPTISNG 214
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 803-860 5.68e-11

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.69  E-value: 5.68e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769  803 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVC 860
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLEN--GTWSPPPPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 737-860 4.30e-10

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 60.72  E-value: 4.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 737 DSCSDLPEIQNGWKTTSHTELVRGARITYQCDPG-----YDIVGSDTLTCQWDLSWSSDPPFCekteESLACDNPGLpEN 811
Cdd:PHA02817   22 NKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVC----KIIRCRFPAL-QN 96

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1622838769 812 GY--QILYKRLYLPGESLTFMCYEGFELMGEVTIRCilGQPSHWNGPLPVC 860
Cdd:PHA02817   97 GFvnGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVC--GINSSWIPKVPIC 145
PHA02639 PHA02639
EEV host range protein; Provisional
 739-860 1.16e-09

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 60.45  E-value: 1.16e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 739 CSDLPEIQNGwKTTSHTELVR-GARITYQCDP----GYDIVGSDTLTCQWDLSWSSDPPFCEKteesLACDNPGLpENGY 813
Cdd:PHA02639   85 CNDPPSIING-KIYNKREMYKvGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPICKM----INCRFPAL-QNGY 158

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1622838769 814 --QILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVC 860
Cdd:PHA02639  159 inGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNIN--ATWFPSIPTC 205
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 275-382 1.41e-09

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 56.27  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 275 CSVSFSNP-EGYIDSSDYPPLPLNNfLECTYNVTVYTGYGVELQVKSVNLSEGEL-----LSIRGVDGPTLTVLANQTLL 348
Cdd:cd00041     1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1622838769 349 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 382
Cdd:cd00041    80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 739-860 2.04e-09

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 59.28  E-value: 2.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 739 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTC---QWdlswsSDPPFCEKTEeslaCDNPGLpENGY-Q 814
Cdd:PHA02927  148 CQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCsggEW-----SDPPTCQIVK----CPHPTI-SNGYlS 217

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1622838769 815 ILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVC 860
Cdd:PHA02927  218 SGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPG--NTWQPELPKC 261
Sushi pfam00084
Sushi repeat (SCR repeat);
561-618 3.13e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 3.13e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 561 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 618
Cdd:pfam00084   1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 738-860 6.33e-09

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 58.08  E-value: 6.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 738 SCSDLPEIQNGWKTTSHTELVRGARITYQCDPG----YDIVGSDTLTCqWDLSWSSDPPFCEKteesLACDNPGLpENGY 813
Cdd:PHA02831   77 NCKDPVTILNGYIKNKKDQYSFGDSVTYACKVNklekYSIVGNETVKC-INKQWVPKYPVCKL----IRCKYPAL-QNGF 150

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1622838769 814 QILYKRLYLPGESLTFMCYEGFELMGEVTIRCilGQPSHWNGPLPVC 860
Cdd:PHA02831  151 LNVFEKKFYYGDIVNFKCKKGFILLGSSVSTC--DINSIWYPGIPKC 195
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 561-618 7.71e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 52.53  E-value: 7.71e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769  561 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 618
Cdd:smart00032   1 CPPPPdIENGTVTSSSGTYSYGDTVTYSCDPGYTL-IGSSTITCLE--NGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 561-619 2.22e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 51.31  E-value: 2.22e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622838769 561 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECI-NVRdpyWNDTEPLCR 619
Cdd:cd00033     1 CPPPPvPENGTVTGSKGSYSYGSTVTYSCNEGYTL-VGSSTITCTeNGG---WSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
803-860 9.01e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 49.42  E-value: 9.01e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769 803 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCIL-GQpshWNGPLPVC 860
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEdGT---WSPPFPEC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 730-862 1.75e-07

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 53.90  E-value: 1.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 730 YIEVSRNDSCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLS---WSSDPPFCEKTEeslaCDNP 806
Cdd:PHA02639   13 YVHGVKSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNnaiWSNKAPFCMLKE----CNDP 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 807 GLPENGYQILYKRLYLPGESLTFMCYE----GFELMGEVTIRCIlgQPSHWNGPLPVCKV 862
Cdd:PHA02639   89 PSIINGKIYNKREMYKVGDEIYYVCNEhkgvQYSLVGNEKITCI--QDKSWKPDPPICKM 146
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 387-442 1.49e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 1.49e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769  387 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 442
Cdd:smart00032   1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 387-442 2.30e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.53  E-value: 2.30e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769 387 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCInaSKPHWSSQEPIC 442
Cdd:cd00033     1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCT--ENGGWSPPPPTC 56
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 284-380 5.90e-05

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 42.76  E-value: 5.90e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  284 GYIDSSDYPPLPLNNfLECTYNVTVYTGYGVELQVKSVNLSEGEL-----LSIRgvDGPTLTVLANQTL---LVEGQVIR 355
Cdd:smart00042   1 GTITSPNYPQSYPNN-LDCVWTIRAPPGYRIELQFTDFDLESSDNceydyVEIY--DGPSASSPLLGRFcgsEAPPPVIS 77

                           90       100
                   ....*....|....*....|....*
gi 1622838769  356 SPTNTISVYFRTFQDDGLGTFQLHY 380
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 561-860 1.14e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 45.46  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 561 CYEPYIQNGNFTTSDPTYNIGTIVEFTCDPGHSLEQGPAIIECINvrdpyWNDTEPlCRAMCggelsaVAGVVLSPNWPE 640
Cdd:PHA02954   21 CTVPTMNNAKLTSTETSFNDKQKVTFTCDSGYYSLDPNAVCETDK-----WKYENP-CKKMC------TVSDYVSELYDK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 641 PYMEGEDCIWKIHVGEEKRIFLDIQFLNLSNSDILTiydgdevmphilgqylgnsgpqklysstpdltiqfhsdpaglif 720
Cdd:PHA02954   89 PLYEVNSTITLICKDETKYFRCEEKNGNTSWNDTVT-------------------------------------------- 124

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 721 gkgqgfimnyievSRNDSCSDLpEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDlSWSSDPPFCEKtees 800
Cdd:PHA02954  125 -------------CPNAECQPL-QLEHGSCQPVKEKYSFGEHITINCDVGYEVIGASYISCTAN-SWNVIPSCQQK---- 185

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 801 laCDNPGLpENGyqILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGQpshWNGPLPVC 860
Cdd:PHA02954  186 --CDIPSL-SNG--LISGSTFSIGGVIHLSCKSGFTLTGSPSSTCIDGK---WNPVLPIC 237
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 1-234 2.20e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 41.59  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769   1 MPAARPPAAGLGGISLFLALLLGSPAA---ALERDALP--EGPYLLPS---------GALERGSPGKEHPEERLVTAPPS 66
Cdd:COG5180   111 PAAKTPELAAGALPAPAAAAALPKAKVtreATSASAGValAAALLQRSdpilakdpdGDSASTLPPPAEKLDKVLTEPRD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769  67 SSQSGEVLGELELDGTVPSAHHDTPALSPLlPEEARPKHALPSKKKPPSL------KQVNSARKQLRPKATSAATVQRAG 140
Cdd:COG5180   191 ALKDSPEKLDRPKVEVKDEAQEEPPDLTGG-ADHPRPEAASSPKVDPPSTsearsrPATVDAQPEMRPPADAKERRRAAI 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769 141 SQPASQ---GLGLLSSSTEKPgppgdpdpimASEEASEVPLWLDRKESA-VPTTPAPLQISPFTSQPyMAHTLPQRSESG 216
Cdd:COG5180   270 GDTPAAeppGLPVLEAGSEPQ----------SDAPEAETARPIDVKGVAsAPPATRPVRPPGGARDP-GTPRPGQPTERP 338

                         250
                  ....*....|....*...
gi 1622838769 217 EPGPDMAQEAPQEDTSPM 234
Cdd:COG5180   339 AGVPEAASDAGQPPSAYP 356
PHA03247 PHA03247
large tegument protein UL36; Provisional
 6-233 4.48e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 4.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769    6 PPAAGLGGISLFLALLLGSPAAALERDALPEGPYLLPSGALERGSPGKEHPEERlVTAPPSSSQSGEVLGELELDGTVPS 85
Cdd:PHA03247  2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP-AAGPPRRLTRPAVASLSESRESLPS 2800

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622838769   86 AHHDTPALSPLL-PEEARPKHALPSKKKPPSlkqvnsarkqlrPKATSAATVQRAGSQPASQGLGLLSSSTEKPGPPGDP 164
Cdd:PHA03247  2801 PWDPADPPAAVLaPAAALPPAASPAGPLPPP------------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS 2868

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622838769  165 DPIMASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYMAHTLPQRSESGEPGPDMAQEAPQEDTSP 233
Cdd:PHA03247  2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
Sushi pfam00084
Sushi repeat (SCR repeat);
387-442 7.43e-03

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 35.55  E-value: 7.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622838769 387 CNFPRRPDSGDVTV-MDLHS-GGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 442
Cdd:pfam00084   1 CPPPPDIPNGKVSAtKNEYNyGASVSYECDPGYRLVGSPTITCQEDGT--WSPPFPEC 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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