NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1387238147|ref|XP_024839277|]
View 

transmembrane protein 14A isoform X1 [Bos taurus]

Protein Classification

TMEM14 family protein( domain architecture ID 10508392)

TMEM14 family protein contains four hydrophobic alpha-helical regions, three of which are membrane-spanning, similar to Arabidopsis thaliana fatty acid export proteins

CATH:  1.10.10.1740
Gene Ontology:  GO:0016020

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 4-87 1.73e-22

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


:

Pssm-ID: 461004  Cd Length: 89  Bit Score: 83.32  E-value: 1.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387238147   4 IGFGYAALVTFGSILGYKRRGGVLSLIAGLFVGFLAGYGAYRVSNDKRDVKLSLFTAFFLATIMGVRFKRSKKIMPAGLV 83
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLNAPYGLELALGASAVLAGVMGPRFIKTRKFMPAGLL 80


                  ....
gi 1387238147  84 AGLS 87
Cdd:pfam03647  81 ALLS 84
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 4-87 1.73e-22

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 83.32  E-value: 1.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387238147   4 IGFGYAALVTFGSILGYKRRGGVLSLIAGLFVGFLAGYGAYRVSNDKRDVKLSLFTAFFLATIMGVRFKRSKKIMPAGLV 83
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLNAPYGLELALGASAVLAGVMGPRFIKTRKFMPAGLL 80


                  ....
gi 1387238147  84 AGLS 87
Cdd:pfam03647  81 ALLS 84
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 4-87 1.73e-22

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 83.32  E-value: 1.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387238147   4 IGFGYAALVTFGSILGYKRRGGVLSLIAGLFVGFLAGYGAYRVSNDKRDVKLSLFTAFFLATIMGVRFKRSKKIMPAGLV 83
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSLNAPYGLELALGASAVLAGVMGPRFIKTRKFMPAGLL 80


                  ....
gi 1387238147  84 AGLS 87
Cdd:pfam03647  81 ALLS 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH