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Conserved domains on  [gi|1220095988|ref|XP_021834877|]
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vegetative cell wall protein gp1-like [Prunus avium]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
47-226 1.70e-04

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.37  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988  47 KPELPQLPK-PELPQLPK-PELPQLP-KPELPQLPK-PELPQLPKPELPQLPKPELPPLPKPELPQFP-KPELPPLAK-P 120
Cdd:PTZ00449  578 KPEFPKDPKhPKDPEEPKkPKRPRSAqRPTRPKSPKlPELLDIPKSPKRPESPKSPKRPPPPQRPSSPeRPEGPKIIKsP 657
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988 121 EIPSAPHVPTLPKEGHKLAEipHAPTLHELPQLPKPELPPLPDFPTLPKPELPAAVPNVPTLPKPEVPKLPEIPPLPHLP 200
Cdd:PTZ00449  658 KPPKSPKPPFDPKFKEKFYD--DYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEP 735
                         170       180
                  ....*....|....*....|....*.
gi 1220095988 201 telpkptlPSVPTLPKATPLPSLFPP 226
Cdd:PTZ00449  736 --------IGDPDAEQPDDIEFFTPP 753
 
Name Accession Description Interval E-value
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
47-226 1.70e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.37  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988  47 KPELPQLPK-PELPQLPK-PELPQLP-KPELPQLPK-PELPQLPKPELPQLPKPELPPLPKPELPQFP-KPELPPLAK-P 120
Cdd:PTZ00449  578 KPEFPKDPKhPKDPEEPKkPKRPRSAqRPTRPKSPKlPELLDIPKSPKRPESPKSPKRPPPPQRPSSPeRPEGPKIIKsP 657
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988 121 EIPSAPHVPTLPKEGHKLAEipHAPTLHELPQLPKPELPPLPDFPTLPKPELPAAVPNVPTLPKPEVPKLPEIPPLPHLP 200
Cdd:PTZ00449  658 KPPKSPKPPFDPKFKEKFYD--DYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEP 735
                         170       180
                  ....*....|....*....|....*.
gi 1220095988 201 telpkptlPSVPTLPKATPLPSLFPP 226
Cdd:PTZ00449  736 --------IGDPDAEQPDDIEFFTPP 753
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
36-126 2.15e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 38.84  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988  36 ETPLPQvpelPKPElpQLPKPELPQlPKPELP-QLPKPELPQLPKPELPQLPKPELPQLPKPELPPlpkpelpqfPKPEl 114
Cdd:NF033838  414 EKPAEQ----PQPA--PAPQPEKPA-PKPEKPaEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQP---------PKTE- 476
                          90
                  ....*....|..
gi 1220095988 115 pplaKPEIPSAP 126
Cdd:NF033838  477 ----KPAQPSTP 484
 
Name Accession Description Interval E-value
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
47-226 1.70e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.37  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988  47 KPELPQLPK-PELPQLPK-PELPQLP-KPELPQLPK-PELPQLPKPELPQLPKPELPPLPKPELPQFP-KPELPPLAK-P 120
Cdd:PTZ00449  578 KPEFPKDPKhPKDPEEPKkPKRPRSAqRPTRPKSPKlPELLDIPKSPKRPESPKSPKRPPPPQRPSSPeRPEGPKIIKsP 657
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988 121 EIPSAPHVPTLPKEGHKLAEipHAPTLHELPQLPKPELPPLPDFPTLPKPELPAAVPNVPTLPKPEVPKLPEIPPLPHLP 200
Cdd:PTZ00449  658 KPPKSPKPPFDPKFKEKFYD--DYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEP 735
                         170       180
                  ....*....|....*....|....*.
gi 1220095988 201 telpkptlPSVPTLPKATPLPSLFPP 226
Cdd:PTZ00449  736 --------IGDPDAEQPDDIEFFTPP 753
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
47-138 1.28e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 39.78  E-value: 1.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988  47 KPELPQLPKPELPQLPKPELPQL--PKPELPQLPKPELPQLPKPELPQlpkpelpplpkpelpqfPKPELPPLAKPEIPS 124
Cdd:PRK15313  559 EPDEPIIPDPVDPVIPDPVIPDPvdPDPVDPVIPDPVIPDPVDPDPVD-----------------PEPVDPVIPDPTIPD 621
                          90
                  ....*....|....
gi 1220095988 125 APHVPTLPKEGHKL 138
Cdd:PRK15313  622 IGQSDTPPITEHQF 635
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
36-126 2.15e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 38.84  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220095988  36 ETPLPQvpelPKPElpQLPKPELPQlPKPELP-QLPKPELPQLPKPELPQLPKPELPQLPKPELPPlpkpelpqfPKPEl 114
Cdd:NF033838  414 EKPAEQ----PQPA--PAPQPEKPA-PKPEKPaEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQP---------PKTE- 476
                          90
                  ....*....|..
gi 1220095988 115 pplaKPEIPSAP 126
Cdd:NF033838  477 ----KPAQPSTP 484
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
40-88 7.01e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 37.47  E-value: 7.01e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1220095988  40 PQVPELPKPELPQLPKPELPQL--PKPELPQLPKPELPQL-------PKPELPQLPKP 88
Cdd:PRK15313  560 PDEPIIPDPVDPVIPDPVIPDPvdPDPVDPVIPDPVIPDPvdpdpvdPEPVDPVIPDP 617
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
38-85 9.34e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 37.09  E-value: 9.34e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1220095988  38 PLPQVPEL--PKPELPQLPKPELPQLPKPElPQLPKPELPQLPKPELPQL 85
Cdd:PRK15313  574 PDPVIPDPvdPDPVDPVIPDPVIPDPVDPD-PVDPEPVDPVIPDPTIPDI 622
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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