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Conserved domains on  [gi|1207117771|ref|XP_021337153|]
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hepatocyte nuclear factor 1-beta-A isoform X2 [Danio rerio]

Protein Classification

homeobox domain-containing protein( domain architecture ID 11062436)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HNF-1B_C pfam04812
Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus; This family consists of a region ...
 193-437 3.78e-102

Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus; This family consists of a region found within the alpha isoform and at the C terminus of the beta isoform of the homeobox-containing transcription factor of HNF-1. Different isoforms of HNF-1 are generated by the differential use of polyadenylation sites and by alternative splicing. The C-terminal region of HNF-1 is responsible for the activation of transcription. Mutations and polymorphisms in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).


:

Pssm-ID: 461438  Cd Length: 258  Bit Score: 305.38  E-value: 3.78e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 193 AMDAYSG-PAHSLNSLLSHSSPHHPQTSSSPPSKMQGVRYSQQGPGEVSSSTTINHHSSNAMSTSQSVLQQVSPGALDPS 271
Cdd:pfam04812   1 AMDAYSGpQPHSANPLLPHSSPHHPQPSASPPSKVQGVRYSQQGPSEVTSSSTISHHGNSAMVTSQSVLQQVSPVGLEPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 272 HSLLSPDAKMISVSGGGLPPVSTLTNIHA--SHHVHQQTPNLIM-PLSGVMAIAQSECPSIFGFLFRlfiHSPLDVVIfl 348
Cdd:pfam04812  81 HSLLSTDAKMISVSGGGLPPVSTLTNLHSlnSHHSPQQTQNLIMaSLPGVMAIGPGETLSLEPNFTN---TGGSQLVI-- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 349 hsGLNTSQAQTVPVINSVAGSLAALQPVQFSQQLNSQHQQ-LMQQSSGHMSQQSFMASVS---HSHMYPHKQEPPQYSHS 424
Cdd:pfam04812 156 --GLNSSQAQSVPVINSVGSSLATLQPVQFSQQLHSSHQQpLMQQSQSHMAQSPFMATMAqlqNSHMYSHKQEPPQYSHT 233

                         250
                  ....*....|...
gi 1207117771 425 SRFPPAMVVTDAN 437
Cdd:pfam04812 234 SLFPSAMVITDTS 246
HNF-1_N super family cl24171
Hepatocyte nuclear factor 1 (HNF-1), N terminus; This family consists of the N terminus of ...
 1-51 7.73e-34

Hepatocyte nuclear factor 1 (HNF-1), N terminus; This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).


The actual alignment was detected with superfamily member pfam04814:

Pssm-ID: 461440  Cd Length: 178  Bit Score: 125.32  E-value: 7.73e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1207117771   1 MIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVR 51
Cdd:pfam04814 128 MIKGYLQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVR 178
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 111-184 1.02e-07

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


:

Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 48.39  E-value: 1.02e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207117771 111 RRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNraeclqrgvspskahglgsnlVTEVRVYNWFANRRK 184
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELG---------------------LTERQVKIWFQNRRA 53
 
Name Accession Description Interval E-value
HNF-1B_C pfam04812
Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus; This family consists of a region ...
 193-437 3.78e-102

Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus; This family consists of a region found within the alpha isoform and at the C terminus of the beta isoform of the homeobox-containing transcription factor of HNF-1. Different isoforms of HNF-1 are generated by the differential use of polyadenylation sites and by alternative splicing. The C-terminal region of HNF-1 is responsible for the activation of transcription. Mutations and polymorphisms in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).


Pssm-ID: 461438  Cd Length: 258  Bit Score: 305.38  E-value: 3.78e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 193 AMDAYSG-PAHSLNSLLSHSSPHHPQTSSSPPSKMQGVRYSQQGPGEVSSSTTINHHSSNAMSTSQSVLQQVSPGALDPS 271
Cdd:pfam04812   1 AMDAYSGpQPHSANPLLPHSSPHHPQPSASPPSKVQGVRYSQQGPSEVTSSSTISHHGNSAMVTSQSVLQQVSPVGLEPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 272 HSLLSPDAKMISVSGGGLPPVSTLTNIHA--SHHVHQQTPNLIM-PLSGVMAIAQSECPSIFGFLFRlfiHSPLDVVIfl 348
Cdd:pfam04812  81 HSLLSTDAKMISVSGGGLPPVSTLTNLHSlnSHHSPQQTQNLIMaSLPGVMAIGPGETLSLEPNFTN---TGGSQLVI-- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 349 hsGLNTSQAQTVPVINSVAGSLAALQPVQFSQQLNSQHQQ-LMQQSSGHMSQQSFMASVS---HSHMYPHKQEPPQYSHS 424
Cdd:pfam04812 156 --GLNSSQAQSVPVINSVGSSLATLQPVQFSQQLHSSHQQpLMQQSQSHMAQSPFMATMAqlqNSHMYSHKQEPPQYSHT 233

                         250
                  ....*....|...
gi 1207117771 425 SRFPPAMVVTDAN 437
Cdd:pfam04812 234 SLFPSAMVITDTS 246
HNF-1_N pfam04814
Hepatocyte nuclear factor 1 (HNF-1), N terminus; This family consists of the N terminus of ...
 1-51 7.73e-34

Hepatocyte nuclear factor 1 (HNF-1), N terminus; This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).


Pssm-ID: 461440  Cd Length: 178  Bit Score: 125.32  E-value: 7.73e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1207117771   1 MIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVR 51
Cdd:pfam04814 128 MIKGYLQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVR 178
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 111-184 1.02e-07

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 48.39  E-value: 1.02e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207117771 111 RRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNraeclqrgvspskahglgsnlVTEVRVYNWFANRRK 184
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELG---------------------LTERQVKIWFQNRRA 53
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 111-184 2.30e-07

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 47.63  E-value: 2.30e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207117771  111 RRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNraeclqrgvspskahglgsnlVTEVRVYNWFANRRK 184
Cdd:smart00389   2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLG---------------------LSERQVKVWFQNRRA 54
Homeodomain pfam00046
Homeodomain;
111-183 4.73e-05

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 40.95  E-value: 4.73e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207117771 111 RRNRfkWGPASQQI--LYQAYERQKNPSKEEREALVEECNraeclqrgvspskahglgsnlVTEVRVYNWFANRR 183
Cdd:pfam00046   1 RRKR--TTFTPEQLeeLEKEFQENPYPSAEEREELAAQLG---------------------LTERQVKVWFQNRR 52
 
Name Accession Description Interval E-value
HNF-1B_C pfam04812
Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus; This family consists of a region ...
 193-437 3.78e-102

Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus; This family consists of a region found within the alpha isoform and at the C terminus of the beta isoform of the homeobox-containing transcription factor of HNF-1. Different isoforms of HNF-1 are generated by the differential use of polyadenylation sites and by alternative splicing. The C-terminal region of HNF-1 is responsible for the activation of transcription. Mutations and polymorphisms in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).


Pssm-ID: 461438  Cd Length: 258  Bit Score: 305.38  E-value: 3.78e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 193 AMDAYSG-PAHSLNSLLSHSSPHHPQTSSSPPSKMQGVRYSQQGPGEVSSSTTINHHSSNAMSTSQSVLQQVSPGALDPS 271
Cdd:pfam04812   1 AMDAYSGpQPHSANPLLPHSSPHHPQPSASPPSKVQGVRYSQQGPSEVTSSSTISHHGNSAMVTSQSVLQQVSPVGLEPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 272 HSLLSPDAKMISVSGGGLPPVSTLTNIHA--SHHVHQQTPNLIM-PLSGVMAIAQSECPSIFGFLFRlfiHSPLDVVIfl 348
Cdd:pfam04812  81 HSLLSTDAKMISVSGGGLPPVSTLTNLHSlnSHHSPQQTQNLIMaSLPGVMAIGPGETLSLEPNFTN---TGGSQLVI-- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207117771 349 hsGLNTSQAQTVPVINSVAGSLAALQPVQFSQQLNSQHQQ-LMQQSSGHMSQQSFMASVS---HSHMYPHKQEPPQYSHS 424
Cdd:pfam04812 156 --GLNSSQAQSVPVINSVGSSLATLQPVQFSQQLHSSHQQpLMQQSQSHMAQSPFMATMAqlqNSHMYSHKQEPPQYSHT 233

                         250
                  ....*....|...
gi 1207117771 425 SRFPPAMVVTDAN 437
Cdd:pfam04812 234 SLFPSAMVITDTS 246
HNF-1_N pfam04814
Hepatocyte nuclear factor 1 (HNF-1), N terminus; This family consists of the N terminus of ...
 1-51 7.73e-34

Hepatocyte nuclear factor 1 (HNF-1), N terminus; This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).


Pssm-ID: 461440  Cd Length: 178  Bit Score: 125.32  E-value: 7.73e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1207117771   1 MIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVR 51
Cdd:pfam04814 128 MIKGYLQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVR 178
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 111-184 1.02e-07

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 48.39  E-value: 1.02e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207117771 111 RRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNraeclqrgvspskahglgsnlVTEVRVYNWFANRRK 184
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELG---------------------LTERQVKIWFQNRRA 53
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 111-184 2.30e-07

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 47.63  E-value: 2.30e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207117771  111 RRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNraeclqrgvspskahglgsnlVTEVRVYNWFANRRK 184
Cdd:smart00389   2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLG---------------------LSERQVKVWFQNRRA 54
Homeodomain pfam00046
Homeodomain;
111-183 4.73e-05

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 40.95  E-value: 4.73e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207117771 111 RRNRfkWGPASQQI--LYQAYERQKNPSKEEREALVEECNraeclqrgvspskahglgsnlVTEVRVYNWFANRR 183
Cdd:pfam00046   1 RRKR--TTFTPEQLeeLEKEFQENPYPSAEEREELAAQLG---------------------LTERQVKVWFQNRR 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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