|
Name |
Accession |
Description |
Interval |
E-value |
| rne |
PRK10811 |
ribonuclease E; Reviewed |
84-257 |
7.18e-08 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 55.43 E-value: 7.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 84 EPVATTETSTPAPEEPASAPESQSADVSASAATVETTAATQKAPAAEVTAVVEEKAAAAPEPAAVAVPEPAAAPKEPAAE 163
Cdd:PRK10811 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQP 928
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 164 EPAAAPESPVKKPEEPAAAPVVEEPAVTVPESPVMEkpvVATDPVAAPETPVKEEPPATHEELAAEPEAPVAEEPVTLSE 243
Cdd:PRK10811 929 QVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAE---TAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005
|
170 180
....*....|....*....|..
gi 1207181691 244 IPSAVDE--------TPAAAPE 257
Cdd:PRK10811 1006 VPEATVEhnhatapmTRAPAPE 1027
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
201-388 |
5.46e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 49.27 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 201 PVVATDPVAAPETPVKEEPPATHEELAAEPEAPVAEEPVTlseipsavdETPAAAPEEDTVapeaeesaaapedaAHEPE 280
Cdd:PRK10811 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV---------EAVAEVVEEPVV--------------VAEPQ 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 281 DPPLSPQLAASPVEPVTEEVVEKVVEEVVKASVSELSAEitETTEVTPEQETVTEVADPEPVTESAPVPEPVSEALSTAE 360
Cdd:PRK10811 906 PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAE--HAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPV 983
|
170 180
....*....|....*....|....*...
gi 1207181691 361 VEIAVSSPVEPTPVTSESEIAAPPEVTL 388
Cdd:PRK10811 984 VAEVAAEVETVTAVEPEVAPAQVPEATV 1011
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
252-400 |
5.93e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 45.80 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 252 PAAAPEEDTVAPEAEESAAAPEDAAHEPEDPPLSPQLAASPVEPVTEEVVEKVVEEVVKASVSE----------LSAEIT 321
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVvvvetthpevIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 322 ETTEVTPEQETVTE---VADPEPVTESAPVPEPVSEALSTAEVEIAVSSPVEPTPVTSESEiAAPPEVTLTPANPEPSPE 398
Cdd:PRK10811 926 EQPQVITESDVAVAqevAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAE-VAAEVETVTAVEPEVAPA 1004
|
..
gi 1207181691 399 EP 400
Cdd:PRK10811 1005 QV 1006
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
172-311 |
8.50e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 45.42 E-value: 8.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 172 PVKKPEEPAAAPVVEEPAVTVPESP-VMEKPVVATDPVAAPETPVKEEPPATHEELAAEPEAPVAEEPVTLSEiPSAVDE 250
Cdd:PRK10811 868 PVVAEVPVAAAVEPVVSAPVVEAVAeVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ-EVAEHA 946
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207181691 251 TPAAAPEEDTVAPEAEESAAAPEDAAHEPEDPPLSPQLAASPVEPVTEEVVEKVVEEVVKA 311
Cdd:PRK10811 947 EPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
176-404 |
9.16e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.46 E-value: 9.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 176 PEEPAAAPVVEEPAV---TVPeSPVMEKPVVATDPVAAPETPVKEEPPATHEELAAEPEAPVAEEPVTLSEIPSAVDETP 252
Cdd:PRK10263 344 PPVASVDVPPAQPTVawqPVP-GPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYA 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 253 AAA--PEEDTVAPEAEESAAAPEDAAHEPEDPPLSPQLAASPVEPVTEEVVEKVVEEVVKA----SVSELSAEITETTEV 326
Cdd:PRK10263 423 PAPeqPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPveqqPVVEPEPVVEETKPA 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 327 TPEQETVTEVADP------------EPVTESAPVPEPVSEALSTAEVeiAVSSPVEPTP---------------VTSESE 379
Cdd:PRK10263 503 RPPLYYFEEVEEKrarereqlaawyQPIPEPVKEPEPIKSSLKAPSV--AAVPPVEAAAavsplasgvkkatlaTGAAAT 580
|
250 260
....*....|....*....|....*
gi 1207181691 380 IAAPPEVTLTPANPEPSPEEPMAEQ 404
Cdd:PRK10263 581 VAAPVFSLANSGGPRPQVKEGIGPQ 605
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
91-261 |
1.78e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 44.26 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 91 TSTPAPEEPASA-PESQSADV--------SASAATVETTAATQKAPAAEVTAVVEEKAAAAPEPAAVAVPEPAAAPKEPA 161
Cdd:PRK10811 821 TQSPMPLTVACAsPEMASGKVwirypvvrPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVV 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 162 AEEPAAAPESPVKKPE-EPAAAPVVEEPAVTVPESPVME-------KPVVATDPVAAPETP---VKEEPPATHEELAAEP 230
Cdd:PRK10811 901 VAEPQPEEVVVVETTHpEVIAAPVTEQPQVITESDVAVAqevaehaEPVVEPQDETADIEEaaeTAEVVVAEPEVVAQPA 980
|
170 180 190
....*....|....*....|....*....|.
gi 1207181691 231 EAPVAEEPVTLSEIPSAVDETPAAAPEEDTV 261
Cdd:PRK10811 981 APVVAEVAAEVETVTAVEPEVAPAQVPEATV 1011
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
171-258 |
1.06e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 41.72 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 171 SPVKKPEEPAAAPVVEEPAVTVPESPVME---KPVVATDPVAAPETPVKEEPPATHEELAAEPEAPVAEEPVTLSEIPSA 247
Cdd:PRK14950 377 SPVRPTPAPSTRPKAAAAANIPPKEPVREtatPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKA 456
|
90
....*....|.
gi 1207181691 248 VDEtPAAAPEE 258
Cdd:PRK14950 457 LIA-DGDVLEQ 466
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
207-352 |
1.27e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.39 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 207 PVAAPETPVKEEPPATHEELAAEPEAPVAeePVTLSEIPSAVDETPAAAPEEDTVAPEAEESAAAPEDAAHEPEDPPLSP 286
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVA--PPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207181691 287 QLAASPVEPVTEEVVEKVVEEVVKASVSE---LSAEITETTEVTPEQETVTEVADPEPVT---ESAPVPEPV 352
Cdd:PRK07994 442 EPAAASRARPVNSALERLASVRPAPSALEkapAKKEAYRWKATNPVEVKKEPVATPKALKkalEHEKTPELA 513
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
68-291 |
1.35e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.40 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 68 PSGEQGEVKKDDAAlEEPVATTETSTPAPEEPASAPESQSADVSASAATVETTAATQKAPAAevtavveekaaaAPEPAA 147
Cdd:PRK12323 365 PGQSGGGAGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPAR------------RSPAPE 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 148 VAVPEPAAAPKEPAAEEPAAAPESPVKKPEEPAAAPVVEEPAVTVPESPVMEKPVVATDPVAAPETPVKEEPPATHEELA 227
Cdd:PRK12323 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP 511
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207181691 228 AEPEAPVAEEPVTLSEIPSAVDETPAAApeedTVAPEAEESAAAPEDAAHEPEDPPLSPQLAAS 291
Cdd:PRK12323 512 AQPDAAPAGWVAESIPDPATADPDDAFE----TLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
313-395 |
2.82e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 40.37 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 313 VSELSAEITETTEVTPE-QETVTEVADPEPVTESAPVPEPVSEalstaEVEIAVSSPVEPTPVTSESEIAAPPEVtlTPA 391
Cdd:COG5373 30 VEELEAELAEAAEAASApAEPEPEAAAAATAAAPEAAPAPVPE-----APAAPPAAAEAPAPAAAAPPAEAEPAA--APA 102
|
....
gi 1207181691 392 NPEP 395
Cdd:COG5373 103 AASS 106
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
61-404 |
3.46e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.31 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 61 PDEKTASPSGEQGEVKKDDAALEEPVATTETSTPAPEEPASAPESQSADVSASAATVETTAA-TQKAPAAEVTAVVEEKA 139
Cdd:PHA03247 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPRRAR 2668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 140 AAAPEPAAVAVPEPAAAPKEPAAEEPAAAPESPVKKPEEPAAAPVVEEPAVTVPESPVMEK---PVVATDPV-----AAP 211
Cdd:PHA03247 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARqasPALPAAPAppavpAGP 2748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 212 ETPVKEEPPATHEELA-----AEPEAPVAEEPVTL------SEIPSAVDETPAAAPEEDTVAPEAEESAAAPEDAAHEPE 280
Cdd:PHA03247 2749 ATPGGPARPARPPTTAgppapAPPAAPAAGPPRRLtrpavaSLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 281 DPPLSPQLAASPVEPVTEEVVEKVVEEVVKAS--VSELSAEITETTEVTPEQETVTEVADPEPVTESAPVPEPVSEALST 358
Cdd:PHA03247 2829 PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP 2908
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1207181691 359 AEVEIAVSSPVEPTPVTSESEIAAPPEVTLTPANPEPSPEEPMAEQ 404
Cdd:PHA03247 2909 PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE 2954
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
172-357 |
6.46e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 39.09 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 172 PVKKPEEPAAAPVVEEPAVTVPESPVMEKPVVATDPVAAPETPVKEEPP----ATHEELAAEPEAPVAEEPVTLSEIPSA 247
Cdd:PRK12323 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApealAAARQASARGPGGAPAPAPAPAAAPAA 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 248 VDETPAAAPEEDTVAPEAEESAAAPEDAAH-EPEDPPLSPQLAASPVEPVTEEVVEKVVEEVVKASVSELSAEITETTEV 326
Cdd:PRK12323 461 AARPAAAGPRPVAAAAAAAPARAAPAAAPApADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET 540
|
170 180 190
....*....|....*....|....*....|.
gi 1207181691 327 TPEQETVTEVADPEPVTESAPVPEPVSEALS 357
Cdd:PRK12323 541 LAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
12-197 |
6.66e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 39.25 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 12 YNVSDPK--EKKEENAVESVEPTEKKAETPVTEAEAAPQEAAAVSAVESEAPDEKTASPSgEQGEVKKDDAALEEPVATT 89
Cdd:PRK10811 845 YPVVRPQdvQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEP-QPEEVVVVETTHPEVIAAP 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 90 ETSTPAPEEPASAPESQSADVSASAATVETTAATQKAPAAEVTAVVEEKAAAAPEPAAVAVPEPAAAPKEPAAEEPAAAP 169
Cdd:PRK10811 924 VTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003
|
170 180 190
....*....|....*....|....*....|.
gi 1207181691 170 ESPVKKPEEP--AAAPVVEEPAVT-VPESPV 197
Cdd:PRK10811 1004 AQVPEATVEHnhATAPMTRAPAPEyVPEAPR 1034
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
94-261 |
9.07e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 38.69 E-value: 9.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 94 PAPEEPASAPESQSADVSASAATVETTAATQKAPAAevTAVVEEKAAAAPEPAAVAVPEPAAAPKEPAAEEPAAAPESPV 173
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQA--PAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207181691 174 KKPEEPAAAPvveepavTVPESPVMEK-PVVATDPVAAPETPVKEEPPathEELAAEPEAPVAEEPVTLSEIPSAVDETP 252
Cdd:PRK07994 439 KKSEPAAASR-------ARPVNSALERlASVRPAPSALEKAPAKKEAY---RWKATNPVEVKKEPVATPKALKKALEHEK 508
|
....*....
gi 1207181691 253 AAAPEEDTV 261
Cdd:PRK07994 509 TPELAAKLA 517
|
|
| |
