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Conserved domains on  [gi|1207177751|ref|XP_021332470|]
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peptidyl-prolyl cis-trans isomerase FKBP5 isoform X1 [Danio rerio]

Protein Classification

FKBP_C and PRK15359 domain-containing protein( domain architecture ID 13624795)

FKBP_C and PRK15359 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
49-139 1.87e-39

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 137.33  E-value: 1.87e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  49 ERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVGKGQVIKAWDICVCSMQKGEVCLMLCKPEYAYGSAGS-PPKVP 127
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIP 82

                          90
                  ....*....|..
gi 1207177751 128 PNSTLVFEIELL 139
Cdd:pfam00254  83 PNATLVFEVELL 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-407 7.22e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 7.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 243 AELLYEvtLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLV 322
Cdd:COG0457    15 GLAYRR--LGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL---------------ELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKI 402
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157


                  ....*
gi 1207177751 403 REHHE 407
Cdd:COG0457   158 GRYEE 162
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 152-254 5.78e-09

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 53.26  E-value: 5.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 152 IVRRIKVKGEGYSnPNEGATVHVHLEGWCG-GRLFDSRD-----VTFAVGESedvGVPLGVDRAMEKLQKGECCLLYLKP 225
Cdd:COG0545     1 LQYKVLKEGTGAK-PKAGDTVTVHYTGTLLdGTVFDSSYdrgepATFPLGVG---QVIPGWDEGLQGMKVGGKRRLVIPP 76

                          90       100
                  ....*....|....*....|....*....
gi 1207177751 226 KYAFGKEGRkEHDIGSNAELLYEVTLKDF 254
Cdd:COG0545    77 ELAYGERGA-GGVIPPNSTLVFEVELLDV 104
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
49-139 1.87e-39

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 137.33  E-value: 1.87e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  49 ERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVGKGQVIKAWDICVCSMQKGEVCLMLCKPEYAYGSAGS-PPKVP 127
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIP 82

                          90
                  ....*....|..
gi 1207177751 128 PNSTLVFEIELL 139
Cdd:pfam00254  83 PNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 47-141 2.73e-38

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 134.54  E-value: 2.73e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  47 EGERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVGKGQVIKAWDICVCSMQKGEVCLMLCKPEYAYGSAGSPPKV 126
Cdd:COG0545    10 TGAKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERGAGGVI 89

                          90
                  ....*....|....*
gi 1207177751 127 PPNSTLVFEIELLNF 141
Cdd:COG0545    90 PPNSTLVFEVELLDV 104
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 34-140 7.05e-18

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 83.27  E-value: 7.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  34 DSGVCKIVKQHGvEGERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVgKGqVIKAWDICVCSMQKGEVCLMLCKP 113
Cdd:PRK10902  145 STGLLYKVEKEG-TGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL-DG-VIPGWTEGLKNIKKGGKIKLVIPP 221

                          90       100
                  ....*....|....*....|....*..
gi 1207177751 114 EYAYGSAGSpPKVPPNSTLVFEIELLN 140
Cdd:PRK10902  222 ELAYGKAGV-PGIPANSTLVFDVELLD 247
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-407 7.22e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 7.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 243 AELLYEvtLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLV 322
Cdd:COG0457    15 GLAYRR--LGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL---------------ELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKI 402
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157


                  ....*
gi 1207177751 403 REHHE 407
Cdd:COG0457   158 GRYEE 162
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 267-456 4.61e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 4.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 267 EKLERAVLVKQKGTQYFKAGRYNYAVIQYqrivNWlEMECgngKEQLqaiqalllVAHLNLALCYLRLREYSQTVENCNK 346
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLY----SK-AIEC---KPDP--------VYYSNRAACHNALGDWEKVVEDTTA 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 347 VMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILicqhkirehhERdkkiyanMFQRFAEHDAK 426
Cdd:TIGR00990 186 ALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV----------ER-------LLKKFAESKAK 248

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1207177751 427 -VCRLKRKKEESVISDQNKQGLKRARLSQDG 456
Cdd:TIGR00990 249 eILETKPENLPSVTFVGNYLQSFRPKPRPAG 279
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 152-254 5.78e-09

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 53.26  E-value: 5.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 152 IVRRIKVKGEGYSnPNEGATVHVHLEGWCG-GRLFDSRD-----VTFAVGESedvGVPLGVDRAMEKLQKGECCLLYLKP 225
Cdd:COG0545     1 LQYKVLKEGTGAK-PKAGDTVTVHYTGTLLdGTVFDSSYdrgepATFPLGVG---QVIPGWDEGLQGMKVGGKRRLVIPP 76

                          90       100
                  ....*....|....*....|....*....
gi 1207177751 226 KYAFGKEGRkEHDIGSNAELLYEVTLKDF 254
Cdd:COG0545    77 ELAYGERGA-GGVIPPNSTLVFEVELLDV 104
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 323-354 4.43e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 4.43e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1207177751  323 AHLNLALCYLRLREYSQTVENCNKVMELDPEN 354
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
323-354 1.29e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.94  E-value: 1.29e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPEN 354
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK15359 PRK15359
type III secretion system chaperone protein SscB; Provisional
 278-402 1.66e-03

type III secretion system chaperone protein SscB; Provisional


Pssm-ID: 185257 [Multi-domain]  Cd Length: 144  Bit Score: 38.83  E-value: 1.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 278 KGTQYFKAGRYNYAVIQYqrivNWLEMEcgngkeqlqaiQALLLVAHLNLALCYLRLREYSQTVENCNKVMELDPENEKA 357
Cdd:PRK15359   30 SGYASWQEGDYSRAVIDF----SWLVMA-----------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1207177751 358 LYRRGEARLLRNEFSLALMDFKQVLQVnSFNRAARSQILICQHKI 402
Cdd:PRK15359   95 VYQTGVCLKMMGEPGLAREAFQTAIKM-SYADASWSEIRQNAQIM 138
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
49-139 1.87e-39

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 137.33  E-value: 1.87e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  49 ERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVGKGQVIKAWDICVCSMQKGEVCLMLCKPEYAYGSAGS-PPKVP 127
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIP 82

                          90
                  ....*....|..
gi 1207177751 128 PNSTLVFEIELL 139
Cdd:pfam00254  83 PNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 47-141 2.73e-38

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 134.54  E-value: 2.73e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  47 EGERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVGKGQVIKAWDICVCSMQKGEVCLMLCKPEYAYGSAGSPPKV 126
Cdd:COG0545    10 TGAKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERGAGGVI 89

                          90
                  ....*....|....*
gi 1207177751 127 PPNSTLVFEIELLNF 141
Cdd:COG0545    90 PPNSTLVFEVELLDV 104
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 34-140 7.05e-18

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 83.27  E-value: 7.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  34 DSGVCKIVKQHGvEGERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVgKGqVIKAWDICVCSMQKGEVCLMLCKP 113
Cdd:PRK10902  145 STGLLYKVEKEG-TGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL-DG-VIPGWTEGLKNIKKGGKIKLVIPP 221

                          90       100
                  ....*....|....*....|....*..
gi 1207177751 114 EYAYGSAGSpPKVPPNSTLVFEIELLN 140
Cdd:PRK10902  222 ELAYGKAGV-PGIPANSTLVFDVELLD 247
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 34-139 2.02e-16

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 77.53  E-value: 2.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  34 DSGVCKIVKQHGvEGERPMIGDRVFVHYTGRLLSGKKFDSSLDRKEPFVFNVGKgqVIKAWDICVCSMQKGEVCLMLCKP 113
Cdd:PRK11570  101 ESGLQFRVLTQG-EGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG--VIPGWIEALTLMPVGSKWELTIPH 177

                          90       100
                  ....*....|....*....|....*.
gi 1207177751 114 EYAYGSAGSPPKVPPNSTLVFEIELL 139
Cdd:PRK11570  178 ELAYGERGAGASIPPFSTLVFEVELL 203
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-407 7.22e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 7.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 243 AELLYEvtLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLV 322
Cdd:COG0457    15 GLAYRR--LGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL---------------ELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKI 402
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157


                  ....*
gi 1207177751 403 REHHE 407
Cdd:COG0457   158 GRYEE 162
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-425 2.35e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.57  E-value: 2.35e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 243 AELLYEvtLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLV 322
Cdd:COG0457    49 GLAYLR--LGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKAL---------------ELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKI 402
Cdd:COG0457   112 ALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191

                         170       180
                  ....*....|....*....|...
gi 1207177751 403 REHHERDKKIYANMFQRFAEHDA 425
Cdd:COG0457   192 AAEVLLALLLALEQALRKKLAIL 214
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
270-424 2.56e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.09  E-value: 2.56e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 270 ERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLVAHLNLALCYLRLREYSQTVENCNKVME 349
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQAL---------------ELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALE 135

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207177751 350 LDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKIREHH--ERDKKIYANMFQRFAEHD 424
Cdd:COG4785   136 LDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKalALLLEDWATAYLLQGDTE 212
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
265-407 2.66e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 2.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 265 LKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLVAHLNLALCYLRLREYSQTVENC 344
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKAL---------------ELDPDDAEALYNLGLAYLRLGRYEEALADY 65

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177751 345 NKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKIREHHE 407
Cdd:COG0457    66 EQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 241-432 1.17e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.05  E-value: 1.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 241 SNAELLYEV-----TLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngKEQLQA 315
Cdd:COG2956    40 ETVEAHLALgnlyrRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL----------ELDPDD 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 316 IQALLLvahlnLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSfnRAARSQI 395
Cdd:COG2956   110 AEALRL-----LAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDP--DCARALL 182

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1207177751 396 LICQHKIREHHERD-KKIYANMFQRFAEHDAKVCRLKR 432
Cdd:COG2956   183 LLAELYLEQGDYEEaIAALERALEQDPDYLPALPRLAE 220
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 54-154 3.90e-10

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 57.80  E-value: 3.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751  54 GDRVFVHYTGRLLSGKKFDSSLDRkEPFVFNVGKGQVIKAWDICVCSMQKGE---VCLmlcKPEYAYGsagsppkvPPNS 130
Cdd:COG1047     4 GDVVTLHYTLKLEDGEVFDSTFEG-EPLEFLHGAGQLIPGLEEALEGMEVGDkktVTL---PPEEAYG--------ERDP 71

                          90       100
                  ....*....|....*....|....
gi 1207177751 131 TLVFEIELLNFRGEELTEDGGIVR 154
Cdd:COG1047    72 ELVQTVPREQFPEDEELEVGMQVE 95
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 267-456 4.61e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 4.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 267 EKLERAVLVKQKGTQYFKAGRYNYAVIQYqrivNWlEMECgngKEQLqaiqalllVAHLNLALCYLRLREYSQTVENCNK 346
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLY----SK-AIEC---KPDP--------VYYSNRAACHNALGDWEKVVEDTTA 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 347 VMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILicqhkirehhERdkkiyanMFQRFAEHDAK 426
Cdd:TIGR00990 186 ALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV----------ER-------LLKKFAESKAK 248

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1207177751 427 -VCRLKRKKEESVISDQNKQGLKRARLSQDG 456
Cdd:TIGR00990 249 eILETKPENLPSVTFVGNYLQSFRPKPRPAG 279
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 282-392 2.02e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.40  E-value: 2.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 282 YFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLVAHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRR 361
Cdd:COG4235    27 YLRLGRYDEALAAYEKAL---------------RLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1207177751 362 GEARLLRNEFSLALMDFKQVLQVNSFNRAAR 392
Cdd:COG4235    92 GLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 243-396 2.82e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.24  E-value: 2.82e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 243 AELLYEVTLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLV 322
Cdd:COG3914    83 LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRAL---------------ALNPDFAE 147

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQIL 396
Cdd:COG3914   148 AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 152-254 5.78e-09

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 53.26  E-value: 5.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 152 IVRRIKVKGEGYSnPNEGATVHVHLEGWCG-GRLFDSRD-----VTFAVGESedvGVPLGVDRAMEKLQKGECCLLYLKP 225
Cdd:COG0545     1 LQYKVLKEGTGAK-PKAGDTVTVHYTGTLLdGTVFDSSYdrgepATFPLGVG---QVIPGWDEGLQGMKVGGKRRLVIPP 76

                          90       100
                  ....*....|....*....|....*....
gi 1207177751 226 KYAFGKEGRkEHDIGSNAELLYEVTLKDF 254
Cdd:COG0545    77 ELAYGERGA-GGVIPPNSTLVFEVELLDV 104
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 243-385 7.22e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 7.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 243 AELLYEVTLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIvnwLEMECGNGKeqlqaiqalllv 322
Cdd:COG5010    25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA---LQLDPNNPE------------ 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVN 385
Cdd:COG5010    90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 323-393 9.95e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 9.95e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARS 393
Cdd:COG4235    19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 264-395 1.07e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 1.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 264 DLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLVAHLNLALCYLRLREYSQTVEN 343
Cdd:COG3914    70 AAAALLLLAALLELAALLLQALGRYEEALALYRRAL---------------ALNPDNAEALFNLGNLLLALGRLEEALAA 134

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1207177751 344 CNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQI 395
Cdd:COG3914   135 LRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNL 186
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 252-401 1.11e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 1.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 252 KDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIvnwlemecgngkEQLQAIQAlllVAHLNLALCY 331
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL------------LKLGPENA---HAYCELAELY 154

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 332 LRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHK 401
Cdd:COG2956   155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 243-385 2.38e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 2.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 243 AELLYEvtLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLV 322
Cdd:COG4783    11 AQALLL--AGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAL---------------ELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVN 385
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 246-385 3.76e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 3.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 246 LYEvTLKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLVAHL 325
Cdd:COG2956   119 IYE-QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL---------------KLDPDCARALL 182

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 326 NLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVN 385
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
282-385 1.53e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 1.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 282 YFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLVAHLNLALCYLRLREYSQtVENCNKVMELDPENEKALYRR 361
Cdd:COG3063     2 YLKLGDLEEAEEYYEKAL---------------ELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLDPNNAEALLNL 65

                          90       100
                  ....*....|....*....|....
gi 1207177751 362 GEARLLRNEFSLALMDFKQVLQVN 385
Cdd:COG3063    66 AELLLELGDYDEALAYLERALELD 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 277-407 1.79e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 1.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 277 QKGTQYFKAGRYNYAVIQYQRIVnwlemecgngkeqlqAIQALLLVAHLNLALCYLRLREYSQTVENCNKVMELDPENEK 356
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEAL---------------ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1207177751 357 ALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKIREHHE 407
Cdd:COG2956    78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 310-407 1.69e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 1.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 310 KEQLQAIQALLLVAHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNR 389
Cdd:COG5010    43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122

                          90
                  ....*....|....*...
gi 1207177751 390 AARSQILICQHKIREHHE 407
Cdd:COG5010   123 NAYSNLAALLLSLGQDDE 140
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 281-383 2.20e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.52  E-value: 2.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 281 QYFKAGRYNYAVIQYQRIVNwlemecGNGKEQLQAiqalllVAHLNLALCYLRLREYSQTVENCNKVMELDPENEK---A 357
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLK------RYPNSPLAP------DALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdA 69

                          90       100
                  ....*....|....*....|....*.
gi 1207177751 358 LYRRGEARLLRNEFSLALMDFKQVLQ 383
Cdd:COG1729    70 LLKLGLSYLELGDYDKARATLEELIK 95
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 277-407 4.37e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 4.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 277 QKGTQYFKAGRYNYAVIQYQRIvnwLEMECGNgkeqlqaiqallLVAHLNLALCYLRLREYSQTVENCNKVMELDPENEK 356
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKA---LELDPDN------------PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1207177751 357 ALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQILICQHKIREHHE 407
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 323-395 1.29e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.80  E-value: 1.29e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFNRAARSQI 395
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 323-354 4.43e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 4.43e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1207177751  323 AHLNLALCYLRLREYSQTVENCNKVMELDPEN 354
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
330-407 1.16e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 1.16e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207177751 330 CYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALmDFKQVLQVNSFNRAARSQILICQHKIREHHE 407
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDE 77
TPR_1 pfam00515
Tetratricopeptide repeat;
323-354 1.29e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.94  E-value: 1.29e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1207177751 323 AHLNLALCYLRLREYSQTVENCNKVMELDPEN 354
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 277-407 2.70e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 42.56  E-value: 2.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 277 QKGTQYFKAGRYNYAVIQYQRIVNWLEmecgnGKEqlQAIQALllvahLNLALCYLRLREYSQTVENCNKVMELDPENEK 356
Cdd:COG4105    37 EEAKEALEKGDYEKAIKLFEELEPRYP-----GSP--YAEQAQ-----LMLAYAYYKQGDYEEAIAAADRFIKLYPNSPN 104

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207177751 357 ---ALYRRGEARLLRNEFS--------LALMDFKQVLQV--NS-FNRAARSQILICQHKIrEHHE 407
Cdd:COG4105   105 adyAYYLRGLSYYEQSPDSdrdqtstrKAIEAFQELINRypDSeYAEDAKKRIDELRDKL-ARKE 168
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 311-404 1.38e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 311 EQLQAIQALLLVAHLNLALCYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSFN-- 388
Cdd:TIGR02917 149 EQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNia 228

                          90
                  ....*....|....*..
gi 1207177751 389 -RAARSQILICQHKIRE 404
Cdd:TIGR02917 229 vLLALATILIEAGEFEE 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 252-410 1.54e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 252 KDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAVIQYQRIVNWL-------------EMECGNGKEQLQAIQA 318
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYApnshqarrllasiQLRLGRVDEAIATLSP 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 319 LLLVAHLNLAL------CYLRLREYSQTVENCNKVMELDPENEKALYRRGEARLLRNEFSLALMDFKQVLQVNSfnRAAR 392
Cdd:TIGR02917 355 ALGLDPDDPAAlsllgeAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--ELGR 432

                         170
                  ....*....|....*...
gi 1207177751 393 SQILICQHKIREhHERDK 410
Cdd:TIGR02917 433 ADLLLILSYLRS-GQFDK 449
PRK15359 PRK15359
type III secretion system chaperone protein SscB; Provisional
 278-402 1.66e-03

type III secretion system chaperone protein SscB; Provisional


Pssm-ID: 185257 [Multi-domain]  Cd Length: 144  Bit Score: 38.83  E-value: 1.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 278 KGTQYFKAGRYNYAVIQYqrivNWLEMEcgngkeqlqaiQALLLVAHLNLALCYLRLREYSQTVENCNKVMELDPENEKA 357
Cdd:PRK15359   30 SGYASWQEGDYSRAVIDF----SWLVMA-----------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1207177751 358 LYRRGEARLLRNEFSLALMDFKQVLQVnSFNRAARSQILICQHKI 402
Cdd:PRK15359   95 VYQTGVCLKMMGEPGLAREAFQTAIKM-SYADASWSEIRQNAQIM 138
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
251-353 3.01e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 251 LKDFEKAKETWEMDLKEKLERAVLVKQKGTQYFKAGRYNYAvIQYQRIVnwlemecgngkeqlqAIQALLLVAHLNLALC 330
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKAL---------------KLDPNNAEALLNLAEL 68

                          90       100
                  ....*....|....*....|...
gi 1207177751 331 YLRLREYSQTVENCNKVMELDPE 353
Cdd:COG3063    69 LLELGDYDEALAYLERALELDPS 91
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
264-404 4.38e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 4.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207177751 264 DLKEKLERAVLVKQK---GTQYFKAGRYNYAVIQYQrivnwlemECgngkeqLQAIQALLLVAHLNLALCYLRLREYSQT 340
Cdd:COG4700    78 ELEKALEFADTVQNRvrlADALLELGRYDEAIELYE--------EA------LTGIFADDPHILLGLAQALFELGRYAEA 143

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207177751 341 VENCNKVMELDPEnekalYRRGEARLLR-------NEFSLALMDFKQVLQVNSfNRAAR---SQILICQHKIRE 404
Cdd:COG4700   144 LETLEKLIAKNPD-----FKSSDAHLLYaralealGDLEAAEAELEALARRYS-GPEARyryAKFLARQGRTAE 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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