|
Name |
Accession |
Description |
Interval |
E-value |
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
154-346 |
3.76e-61 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 203.98 E-value: 3.76e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 154 VTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQ 233
Cdd:pfam15619 1 VTQRVLSARLHKIKELQNELAELQSKLEELRKENRLLKRLQKRQEKALGKYEGTESELPQLIARHNEEVRVLRERLRRLQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 234 ENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMELSSGSFQRQLAN 313
Cdd:pfam15619 81 EKERDLERKLKEKEAELLRLRDQLKRLEKLSEDKNLAEREELQKKLEQLEAKLEDKDEKIQDLERKLELENKSFRRQLAA 160
|
170 180 190
....*....|....*....|....*....|...
gi 1207165130 314 ERRKTHDAQQEVKALQEEVERLCTKLKEKEREL 346
Cdd:pfam15619 161 EKKKHKEAQEEVKILQEEIERLQQKLKEKEREL 193
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-549 |
3.04e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 143 SKDAPSKEVDQVTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNET 222
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 223 HVLRERLRRSQENQRTAERsLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMEl 302
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADE-AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE- 1507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 303 ssgsfQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIY-ANRMHKASSRKEAENGSK---RKGFNITS 378
Cdd:PTZ00121 1508 -----AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkAEELKKAEEKKKAEEAKKaeeDKNMALRK 1582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 379 TKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDDYLSLKDQQSRehRTRESKEWKIQEFWREREKERHMESAREQEKEKE 458
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK--KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 459 TLHERERQTEllkDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQ 538
Cdd:PTZ00121 1661 IKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
410
....*....|.
gi 1207165130 539 ERVEEERQRKE 549
Cdd:PTZ00121 1738 EAEEDKKKAEE 1748
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
258-566 |
4.25e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 4.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 258 QKLQQLADDQNLGEREELSRKLIGTQSRL-QDSEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLC 336
Cdd:pfam17380 273 QLLHIVQHQKAVSERQQQEKFEKMEQERLrQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 337 TKLKEKERELD-------ARNIYANR-MHKASSRKEAENGSKRKGFNITSTKAVQTEDRTSSLdfpspppaltnnlppdd 408
Cdd:pfam17380 353 IRQEERKRELErirqeeiAMEISRMReLERLQMERQQKNERVRQELEAARKVKILEEERQRKI----------------- 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 409 qtddylslKDQQSREHRTRESKEWKIQEFWR--EREKERHMESAREQEKEKETLHERERQTEllKDVERQRLDQDLSSNE 486
Cdd:pfam17380 416 --------QQQKVEMEQIRAEQEEARQREVRrlEEERAREMERVRLEEQERQQQVERLRQQE--EERKRKKLELEKEKRD 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 487 KNfkgnrglnREEEDRRigmSVSQKEEEIQKQRELEEE-QQKVRNREIQDYNQERVEEERQRK-EQLLAKMREIDIQTQG 564
Cdd:pfam17380 486 RK--------RAEEQRR---KILEKELEERKQAMIEEErKRKLLEKEMEERQKAIYEEERRREaEEERRKQQEMEERRRI 554
|
..
gi 1207165130 565 QD 566
Cdd:pfam17380 555 QE 556
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-558 |
8.24e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 8.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 225 LRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRkligtQSRLQDSEHRVKELEKNMELSS 304
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE-----LARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 305 GSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNiyANRMHKASSRKEAEngskrkgfnitstkavqt 384
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE--EALLEAEAELAEAE------------------ 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 385 edrtssldfpspppaltnnlppddqtDDYLSLKDQQSREHRTRESKEWKIQEfwREREKERHMESAREQEKEKETLHERE 464
Cdd:COG1196 379 --------------------------EELEELAEELLEALRAAAELAAQLEE--LEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 465 RQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVEEE 544
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330
....*....|....
gi 1207165130 545 RQRKEQLLAKMREI 558
Cdd:COG1196 509 GVKAALLLAGLRGL 522
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-558 |
1.41e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 138 RSQSLSKDAPSKEVDQVTKRMLSARllKINELKNALSELRLHADELQR---ENRLLRQLQLRQEKALHRYNDTDSEISQL 214
Cdd:PTZ00121 1291 KADEAKKAEEKKKADEAKKKAEEAK--KADEAKKKAEEAKKKADAAKKkaeEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 215 LARHNNETHVLRERLRRSQENQRTAERS------LRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQD 288
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAkkkaeeDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 289 SEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNiYANRMHKASSRKEAENG 368
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEA 1527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 369 SKRKgfnitstkavqtEDRTSsldfpspppaltnnlppddqtddylslkDQQSREHRTRESKEWKIQEFWREREKERHME 448
Cdd:PTZ00121 1528 KKAE------------EAKKA----------------------------DEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 449 SAREQEKEKETlheRERQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQREL-----EE 523
Cdd:PTZ00121 1568 EAKKAEEDKNM---ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQlkkkeAE 1644
|
410 420 430
....*....|....*....|....*....|....*.
gi 1207165130 524 EQQKVRN-REIQDYNQERVEEERQRKEQLLAKMREI 558
Cdd:PTZ00121 1645 EKKKAEElKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-366 |
2.54e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 165 KINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 245 ERDAQLQRCRSQMQKLQQLADDQnLGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQE 324
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEA-EEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAEELLEALRAAAELAAQ 401
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1207165130 325 VKALQEEVERLctkLKEKERELDARNIYANRMHKASSRKEAE 366
Cdd:COG1196 402 LEELEEAEEAL---LERLERLEEELEELEEALAELEEEEEEE 440
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-552 |
3.75e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 138 RSQSLSKDAPSKEVDQVTKRMLSARllKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLAR 217
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKK--KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 218 HNNETHVLRERLRRSQENQRTAERSLR----ERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRV 293
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKadeaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 294 KELEKNMELSSGSFQRQlANERRKTHDAQQEVKALQEEVERlctKLKEKERELDARNIYANRMHKASSRKEAENGSKRKG 373
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKK-AEEKKKADELKKAEELKKAEEKK---KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 374 FNITSTKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKI---QEFWREREKERHMESA 450
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIkaaEEAKKAEEDKKKAEEA 1680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 451 REQEKEKETLHERERQtellKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQRELE---EEQQK 527
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEakkDEEEK 1756
|
410 420
....*....|....*....|....*
gi 1207165130 528 VRNREIQDYNQERVEEERQRKEQLL 552
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVI 1781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-349 |
5.07e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 5.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 165 KINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 245 ERDAQLQRCRSQMQKLQQLADDQnLGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQE 324
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEA-EAELAEAEEELEELAEELLEALRAAAELAAQLE----ELEEAEEALLERLERLEEE 422
|
170 180
....*....|....*....|....*
gi 1207165130 325 VKALQEEVERLCTKLKEKERELDAR 349
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEA 447
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
168-554 |
1.01e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 168 ELKNALSELRLHAD-----ELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERS 242
Cdd:COG1196 221 ELKELEAELLLLKLreleaELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 243 LRERDAQLQRCRSQMQKLQQLADdqnlgEREELSRKLIGTQSRLQDSEHRVKELEKNMELSsgsfQRQLANERRKTHDAQ 322
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEE-----ELAELEEELEELEEELEELEEELEEAEEELEEA----EAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 323 QEVKALQEEVERLctkLKEKERELDARNIYANRMHKASSRKEAENGSKRkgfnitstkavQTEDRTSSLdfpspppaltn 402
Cdd:COG1196 372 AELAEAEEELEEL---AEELLEALRAAAELAAQLEELEEAEEALLERLE-----------RLEEELEEL----------- 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 403 nlppDDQTDDYLSLKDQQSREHRTRESKEWKIQEfwREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQDL 482
Cdd:COG1196 427 ----EEALAELEEEEEEEEEALEEAAEEEAELEE--EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207165130 483 SSNEKNFKGNRGLNREEEDRRIGMSVSqkeEEIQKQRELEEEQQKVRNREIQDYNQERVEEERQRKEQLLAK 554
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVA---VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-559 |
2.02e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 2.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 228 RLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQN----------LGEREELSRKLIGTQSRLQDSEHRVKELE 297
Cdd:TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAelrelelallVLRLEELREELEELQEELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 298 KNMELSSGSFQR---QLANERRKTHDAQQEVKALQEEVERLctklKEKERELDARNIYANRMHKASSRKEAENGSKRkgf 374
Cdd:TIGR02168 260 AELQELEEKLEElrlEVSELEEEIEELQKELYALANEISRL----EQQKQILRERLANLERQLEELEAQLEELESKL--- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 375 NITSTKAVQTEDRTSSLdfpspppaltnnlppddqTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKERhmeSAREQE 454
Cdd:TIGR02168 333 DELAEELAELEEKLEEL------------------KEELESLEAELEELEAELEELESRLEELEEQLETLR---SKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 455 KEKETLH--ERERQTELLKDVE--RQRLDQDLSSNEKNF-KGNRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVR 529
Cdd:TIGR02168 392 ELQIASLnnEIERLEARLERLEdrRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350
....*....|....*....|....*....|.
gi 1207165130 530 -NREIQDYNQERVEEERQRKEQLLAKMREID 559
Cdd:TIGR02168 472 eAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
163-347 |
3.60e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 163 LLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLAR-------HNNETHVLRERLRRSQEN 235
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqkelyaLANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 236 QRTAERSLRERDAQLQRCRSQMQKLQQLADDQN------LGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgsfqr 309
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEekleelKEELESLEAELEELEAELEELESRLEELEEQLE-------- 382
|
170 180 190
....*....|....*....|....*....|....*...
gi 1207165130 310 qlaNERRKTHDAQQEVKALQEEVERLCTKLKEKERELD 347
Cdd:TIGR02168 383 ---TLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-572 |
3.82e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 228 RLRRSQENQRTAERSLRERDAQLQRCRSQMQKL---QQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMElss 304
Cdd:COG1196 180 KLEATEENLERLEDILGELERQLEPLERQAEKAeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE--- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 305 gSFQRQLANERRKTHDAQQEVKALQEEVERLctklKEKERELDAR--NIYANRMHKASSRKEAENGSKRKGFNITSTKAV 382
Cdd:COG1196 257 -ELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 383 QTEDRTSSLdfpspppALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHE 462
Cdd:COG1196 332 LEELEEELE-------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 463 RERQTELLKDvERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmsvSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVE 542
Cdd:COG1196 405 LEEAEEALLE-RLERLEEELEELEEALAELEEEEEEEEEALE----EAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350
....*....|....*....|....*....|
gi 1207165130 543 EERQRKEQLLAKMREIDIQTQGQDSDFFSD 572
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
134-365 |
5.15e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 5.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 134 AGAIRSQSLSKDAPSKEVDQVTKRMLSArLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHrynDTDSEISQ 213
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS---ALRKDLAR 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 214 LLARHNNETHVLRERLRRSQE--NQRTAERS-LRERDAQLQRCRSQMQKLQQLADDQNlGEREELSRKLIGTQSRLQDSE 290
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTEleAEIEELEErLEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 291 ---HRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDA----RNIYANRMHKASSRK 363
Cdd:TIGR02168 817 eeaANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllneRASLEEALALLRSEL 896
|
..
gi 1207165130 364 EA 365
Cdd:TIGR02168 897 EE 898
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
159-372 |
1.92e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 159 LSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRT 238
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 239 AERSLRERDAQLQRCRSQMQKLQQL--------ADDQNLGER-----EELSRKLIGTQSRLQDSEHRVKELEKNMELSSG 305
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQpplalllsPEDFLDAVRrlqylKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207165130 306 SFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIYANRMHKASSRKEAENGSKRK 372
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
134-355 |
2.72e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 134 AGAIRSQSLSKDAPSKEVDQVTKRM------LSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALhryNDT 207
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIaelekeLAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL---AEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 208 DSEISQLLARHNNETHVLRERLRRSQENQRT--------------AERSL-------RERDAQLQRCRSQMQKLQQLADD 266
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQpplalllspedfldAVRRLqylkylaPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 267 QNlGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKEREL 346
Cdd:COG4942 169 LE-AERAELEALLAELEEERAALEALKAERQKLLA----RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
....*....
gi 1207165130 347 DARNIYANR 355
Cdd:COG4942 244 PAAGFAALK 252
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
225-557 |
2.76e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 225 LRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQD-----SEHRVKELEKN 299
Cdd:pfam02463 680 ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQkideeEEEEEKSRLKK 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 300 MELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIY-ANRMHKASSRKEAENGSKRKGFNITS 378
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEeAELLEEEQLLIEQEEKIKEEELEELA 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 379 TKAVQTEDRTSSLDfpspppALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKIQEfwrEREKERHMESAREQEKEKE 458
Cdd:pfam02463 840 LELKEEQKLEKLAE------EELERLEEEITKEELLQELLLKEEELEEQKLKDELESK---EEKEKEEKKELEEESQKLN 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 459 TLHERERQTELLKDVERQRLDQDLSSNEKnfkgnrgLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQ 538
Cdd:pfam02463 911 LLEEKENEIEERIKEEAEILLKYEEEPEE-------LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEF 983
|
330
....*....|....*....
gi 1207165130 539 ERVEEERQRKEQLLAKMRE 557
Cdd:pfam02463 984 EEKEERYNKDELEKERLEE 1002
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
198-348 |
4.81e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 198 EKALHRYNDTDSEISQL-LARHNNETHVLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELS 276
Cdd:COG4913 265 AAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLE 344
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207165130 277 RKLIGTQSRLQDSEHRVKELEK-------NMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDA 348
Cdd:COG4913 345 REIERLERELEERERRRARLEAllaalglPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
159-558 |
6.64e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 159 LSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRT 238
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 239 AERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMELssgsfQRQLANERRKT 318
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA-----ALEAALAAALQ 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 319 HDAQQEVKALQEEVERLCTKLKEKERELDARNIYANRmhkaSSRKEAENGSKRKGFNITSTKAVQTEDRTSsldfpsppp 398
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA----ALAAALARGAIGAAVDLVASDLREADARYY--------- 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 399 ALTNNLPPDDQTDDYLSLKDQQSREHRTRE---SKEWKIQEFW----REREKERHMESAREQEKEKETLHERERQTELLK 471
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLrevTLEGEGGSAGgsltGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 472 DVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmsvSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVEEERQRKEQL 551
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQ----LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*..
gi 1207165130 552 LAKMREI 558
Cdd:COG1196 773 EREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
227-558 |
1.74e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 227 ERLRRSQENQRTAERSLR-ERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKliGTQSRLQDSEHRVKELEKNMELSSG 305
Cdd:PTZ00121 1227 EAVKKAEEAKKDAEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK--ADELKKAEEKKKADEAKKAEEKKKA 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 306 SFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIYANRM-HKASSRKEAENGSKRKgfniTSTKAVQT 384
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAaDEAEAAEEKAEAAEKK----KEEAKKKA 1380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 385 EDRTSSLDFPSPPPALTNNLPPDDQTDDylSLKDQQSREHRTRESKEwKIQEFWREREKERHMESAREQEKEKETLHERE 464
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKAD--ELKKAAAAKKKADEAKK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 465 RQTELLKDVERQRLDQDLSSNEKNFKgnrglnREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVEEE 544
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAK------KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330
....*....|....
gi 1207165130 545 RQRKEQLLAKMREI 558
Cdd:PTZ00121 1532 EAKKADEAKKAEEK 1545
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
159-365 |
1.95e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 159 LSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEK-------ALHRYNDTDSEISQLLARHNNETHVLRERLRR 231
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQqkqilreRLANLERQLEELEAQLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 232 SQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNlGEREELSRKLIGTQ--------------SRLQDSEHRVKEL- 296
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELE-EQLETLRSKVAQLElqiaslnneierleARLERLEDRRERLq 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207165130 297 ----EKNMELSSGSF---QRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDArniYANRMHKASSRKEA 365
Cdd:TIGR02168 421 qeieELLKKLEEAELkelQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA---AERELAQLQARLDS 493
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
244-558 |
2.19e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 244 RERDAQLQRCRSQMQKLQQLADDQnLGEREELSRKLIGTQSRLQDSEHRVKELEKNMELSSG---SFQRQLANERRKTHD 320
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQeeeKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 321 AQQEVKALQEEVERLCTKLKEKERELDA-----RNIYAnrmHKASSRKEAENGSKRKgfniTSTKAVQTEDRTSSLDfps 395
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKleealNDLEA---RLSHSRIPEIQAELSK----LEEEVSRIEARLREIE--- 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 396 pppALTNNLPPDDQtddYLslkdQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERERQTE-LLKDVE 474
Cdd:TIGR02169 819 ---QKLNRLTLEKE---YL----EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLEsRLGDLK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 475 RQR--LDQDLSSNEKNFkgnRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREI--QDYNQERVEEERQRKEQ 550
Cdd:TIGR02169 889 KERdeLEAQLRELERKI---EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeEELSLEDVQAELQRVEE 965
|
....*...
gi 1207165130 551 LLAKMREI 558
Cdd:TIGR02169 966 EIRALEPV 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
181-562 |
3.47e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 181 DELQRENRLLRQLQLRQEKALHRYNDTDSEIsqllarhNNETHVLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKL 260
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEEL-------EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 261 QQLADDQNlGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLK 340
Cdd:TIGR02168 753 SKELTELE-AEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 341 EKERELDARNIYANRMHKASSRKEAEngskrkgfnITSTKAVQTEDRTSsldfpspPPALTnnlppdDQTDDYLSLKDQQ 420
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSED---------IESLAAEIEELEEL-------IEELE------SELEALLNERASL 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 421 SREHRTRESKEWKIQEfwREREKERHMESAREQEKEKETLHERERQtellkdvERQRLDQDLSSNEKNFKGNRGLNREEe 500
Cdd:TIGR02168 886 EEALALLRSELEELSE--ELRELESKRSELRRELEELREKLAQLEL-------RLEGLEVRIDNLQERLSEEYSLTLEE- 955
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207165130 501 drrIGMSVSQKEEEIQK-QRELEEEQQKVRN---------REIQDYNQERVEEERQR------KEQLLAKMREIDIQT 562
Cdd:TIGR02168 956 ---AEALENKIEDDEEEaRRRLKRLENKIKElgpvnlaaiEEYEELKERYDFLTAQKedlteaKETLEEAIEEIDREA 1030
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
272-563 |
4.40e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 272 REELSRKLIGTQSRLQDSEHRVKELEKNM--------------ELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCT 337
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLeplerqaekaeryrELKEELKELEAELLLLKLRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 338 KLKEKERELDARNIYANRMHKASSRKEAENGSKRKGFNITSTKAVQTEDRTSSLdfpspppaltnnlppddqtddylslK 417
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL-------------------------E 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 418 DQQSREHRTRESKEWKIQEfWREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQDLSSNEKNfkgnrgLNR 497
Cdd:COG1196 309 ERRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EEL 381
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207165130 498 EEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNReiqdynQERVEEERQRKEQLLAKMREIDIQTQ 563
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLER------LERLEEELEELEEALAELEEEEEEEE 441
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
417-587 |
4.45e-04 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 43.37 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 417 KDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERERqtELLKDVERQRLDqdlssneknfKGNRGLN 496
Cdd:TIGR01622 3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDR--DYYRGRERRSRS----------RRPNRRY 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 497 REEEDRRigmsvsQKEEEIQKQRELEEEQQKvRNREIQDYNQERVEEERQRK----EQLLAKMREIDIQtqgqdsDFFSd 572
Cdd:TIGR01622 71 RPREKRR------RRGDSYRRRRDDRRSRRE-KPRARDGTPEPLTEDERDRRtvfvQQLAARARERDLY------EFFS- 136
|
170
....*....|....*
gi 1207165130 573 DTGSVRSPPRLSEQR 587
Cdd:TIGR01622 137 KVGKVRDVQIIKDRN 151
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
165-333 |
5.25e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 165 KINELKNALSELRLHADELQRenrllrqLQLRQEKALHRYNDTDSEISQllarhNNETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG3206 220 QLSELESQLAEARAELAEAEA-------RLAALRAQLGSGPDALPELLQ-----SPVIQQLRAQLAELEAELAELSARYT 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 245 ERDAQLQRCRSQMQKLQQLAddqnlgeREELSRKLIGTQSRLQDSEHRVKELEKNMElssgsfqrQLANERRKTHDAQQE 324
Cdd:COG3206 288 PNHPDVIALRAQIAALRAQL-------QQEAQRILASLEAELEALQAREASLQAQLA--------QLEARLAELPELEAE 352
|
....*....
gi 1207165130 325 VKALQEEVE 333
Cdd:COG3206 353 LRRLEREVE 361
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
408-550 |
6.26e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.94 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 408 DQTDDYLslkDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERE---------------RQTELLKD 472
Cdd:COG2268 180 EDENNYL---DALGRRKIAEIIRDARIAEAEAERETEIAIAQANREAEEAELEQEREietariaeaeaelakKKAEERRE 256
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207165130 473 VERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmsvsQKEEEIQKQRELEEEQQKVRNREiqdynqERVEEERQRKEQ 550
Cdd:COG2268 257 AETARAEAEAAYEIAEANAEREVQRQLEIAER-----EREIELQEKEAEREEAELEADVR------KPAEAEKQAAEA 323
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
227-353 |
1.03e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.96 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 227 ERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQnlgereelsrklIGTQSRLQDSEHRVKELEKNMElssgS 306
Cdd:COG1566 103 EAELGAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKG------------AVSQQELDEARAALDAAQAQLE----A 166
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1207165130 307 FQRQLAnERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIYA 353
Cdd:COG1566 167 AQAQLA-QAQAGLREEEELAAAQAQVAQAEAALAQAELNLARTTIRA 212
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
165-557 |
1.09e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 165 KINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISqllarhnnethVLRERLRRSQENQRTAErslR 244
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-----------TLEAEIEDLRETIAETE---R 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 245 ERDAQLQRCRSQMQKLQQLADDQNLG----EREELSRKLIgtQSRLQDSEHRVKELEKNME---LSSGSFQRQLANERRK 317
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEERDDLlaeaGLDDADAEAV--EARREELEDRDEELRDRLEecrVAAQAHNEEAESLRED 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 318 THDAQQEVKALQEEVERLCTKLKEKERELDARniyanRMHKASSRKEAENGSKRKGFnitstKAVQTEDRTSSLDfpspp 397
Cdd:PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDR-----REEIEELEEEIEELRERFGD-----APVDLGNAEDFLE----- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 398 pALTNNLppDDQTDDYLSLK-DQQSREHRTRESK----EWKIQEFWREREKERHMESAREQEKEKETLHERERQTELlkd 472
Cdd:PRK02224 416 -ELREER--DELREREAELEaTLRTARERVEEAEalleAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEE--- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 473 vERQRLDQDLSSNEKNFKGNRGLNREEEDRrigmsvSQKEEEIQKQRELEEEQqkvrnreiqdynQERVEEERQRKEQLL 552
Cdd:PRK02224 490 -EVEEVEERLERAEDLVEAEDRIERLEERR------EDLEELIAERRETIEEK------------RERAEELRERAAELE 550
|
....*
gi 1207165130 553 AKMRE 557
Cdd:PRK02224 551 AEAEE 555
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
165-413 |
1.44e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 165 KINELKNALSELRLHADELQREnrlLRQLQLRQEKALHRYNDTDSEISQLlarhNNETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAE---LDALQAELEELNEEYNELQAELEAL----QAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 245 ERDAQLQRCRSQMQKLQQLADDQNLGE---REELSRKLIGTQSRLQDSEHRVKELEKNMELSSGSFQRQLANERRKTHDA 321
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSESFSDfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 322 QQEVKALQEEVERLCTKLKEKERELDARNIYANRMHKASSRKEAENGSKRKGFNITSTKAVQTEDRTSSLDFPSPPPALT 401
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGA 249
|
250
....*....|..
gi 1207165130 402 NNLPPDDQTDDY 413
Cdd:COG3883 250 GAAGAAGAAAGS 261
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
432-552 |
1.93e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 432 WKIQEFWREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEedrrigmsvsQK 511
Cdd:PRK12705 24 LLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE----------QL 93
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1207165130 512 EEEIQKQRELEEEQQKvRNREIQDYNQERVEEERQRKEQLL 552
Cdd:PRK12705 94 DARAEKLDNLENQLEE-REKALSARELELEELEKQLDNELY 133
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
149-346 |
3.02e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 149 KEVDQVTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRER 228
Cdd:pfam17380 360 RELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 229 LR--RSQENQRTAERSLrERDAQLQRCRSQ-----MQKLQQLADDQNLGEREELSRKLI-----GTQSRLQDSEHRVKEL 296
Cdd:pfam17380 440 LEeeRAREMERVRLEEQ-ERQQQVERLRQQeeerkRKKLELEKEKRDRKRAEEQRRKILekeleERKQAMIEEERKRKLL 518
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1207165130 297 EKNMELSSGSF----QRQLANERRKTHDAQQEVKALQEEV-----ERLCTKLKEKEREL 346
Cdd:pfam17380 519 EKEMEERQKAIyeeeRRREAEEERRKQQEMEERRRIQEQMrkateERSRLEAMEREREM 577
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
235-545 |
3.18e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 235 NQRTAERSLRERDAQLQRCRSQMQKLQQLADDQN--LGEREELSRKLIGTQSRLQDSEH-RVKELEKNMELSSGSFQRQL 311
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEkrLEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 312 ANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNI-YANRMHKASSRKEAENGSKRKgfnitstkaVQTEDRTSS 390
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKrRDKLTEEYAELKEELEDLRAE---------LEEVDKEFA 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 391 LDFpspppaltnnlppdDQTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKER---HMESAREQEKEKETLHERERQT 467
Cdd:TIGR02169 382 ETR--------------DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELadlNAAIAGIEAKINELEEEKEDKA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 468 ELLKDVERQ--RLDQDLSSNEKNFkgnrgLNREEEDRRIGMSVSQKEEEIQkqrELEEEQQKVRNREIQDYNQERVEEER 545
Cdd:TIGR02169 448 LEIKKQEWKleQLAADLSKYEQEL-----YDLKEEYDRVEKELSKLQRELA---EAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| DUF724 |
pfam05266 |
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
254-348 |
3.87e-03 |
|
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.
Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 39.18 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 254 RSQMQKLQQLADDQN--LGEREELSRKLIGTQSRLQDSEHRVKELEKNM-ELssgsfQRQLANERRKTHDAQQEVKALQE 330
Cdd:pfam05266 91 QSRINKLLSLKDRQTklLEELKKLEKKIAEEESEKRKLEEEIDELEKKIlEL-----ERQLALAKEKKEAADKEIARLKS 165
|
90
....*....|....*...
gi 1207165130 331 EVERLCTKLKEKERELDA 348
Cdd:pfam05266 166 EAEKLEQEIQDVELEFEA 183
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
231-557 |
4.11e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 231 RSQENQRTAERSLRERDAQlqrcRSQMQKLQQLADDQNLGEREELSRKLigTQSRLQDSEHRVKELEKNMELSSGSFQRQ 310
Cdd:PTZ00121 1134 RKAEDARKAEEARKAEDAK----RVEIARKAEDARKAEEARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAARK 1207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 311 LANER-----RKTHDAQ--------QEVKALQEEVERlctKLKEKERELDARNIYANRMHKASSRKEAENGSKRKGFNIT 377
Cdd:PTZ00121 1208 AEEERkaeeaRKAEDAKkaeavkkaEEAKKDAEEAKK---AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 378 STKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDDylsLKDQQSREHRTRESKEWKIQEfwREREKERHMESAREQEKEK 457
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE---AKKKAEEAKKKADAAKKKAEE--AKKAAEAAKAEAEAAADEA 1359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 458 ETLHERERQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREiqdyN 537
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD----E 1435
|
330 340
....*....|....*....|
gi 1207165130 538 QERVEEERQRKEQLLAKMRE 557
Cdd:PTZ00121 1436 AKKKAEEAKKADEAKKKAEE 1455
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
227-558 |
4.25e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 227 ERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQqladdqnlGEREELSRKLIgTQSRLQDSEHRVKELEKNmelssgS 306
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLR--------REREKAERYQA-LLKEKREYEGYELLKEKE------A 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 307 FQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNiyanrmhkASSRKEAENGSKRKGFNITSTKAVQTED 386
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN--------KKIKDLGEEEQLRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 387 RTSSLDFPSPPPALTNNLPPDD-QTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERER 465
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 466 QTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQK-QRELEEEQQKVRNREIQ-DYNQERVEE 543
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINElEEEKEDKALEIKKQEWKlEQLAADLSK 466
|
330
....*....|....*
gi 1207165130 544 ERQRKEQLLAKMREI 558
Cdd:TIGR02169 467 YEQELYDLKEEYDRV 481
|
|
| BMS1 |
COG5192 |
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ... |
286-548 |
4.65e-03 |
|
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain] Cd Length: 1077 Bit Score: 40.49 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 286 LQDSEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLC-TKLKEKERELDARNIYANRMHKASSRKE 364
Cdd:COG5192 418 IAEETSREDELSFDDSDVSTSDENEDVDFTGKKGAINNEDESDNEEVAFDSdSQFDESEGNLRWKEGLASKLAYSQSGKR 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 365 AENGSKRKGFNITSTKAVQTEDRTSSLDfpspppALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKiQEFWREREKE 444
Cdd:COG5192 498 GRNIQKIFYDESLSPEECIEEYKGESAK------SSESDLVVQDEPEDFFDVSKVANESISSNHEKLME-SEFEELKKKW 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 445 RHMESAREQEKEKETLHERERQTELLKDVER----QRLDQDLSSNEKN--FKGNRGLNREEEDRRIGMSVSQKEE----- 513
Cdd:COG5192 571 SSLAQLKSRFQKDATLDSIEGEEELIQDDEKgnfeDLEDEENSSDNEMeeSRGSSVTAENEESADEVDYETEREEnarkk 650
|
250 260 270
....*....|....*....|....*....|....*
gi 1207165130 514 EIQKQRELEEEQQKVRNREIQDYNQERVEEERQRK 548
Cdd:COG5192 651 EELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLK 685
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
14-493 |
5.50e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 14 RLSHHNERKILESLRSGKQENNGKDMGNSAGDHAQSRTRETAGDPGRNGFSDGERSSGSFYSDDYENASHSDRSLSPSAS 93
Cdd:pfam02463 579 KLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGL 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 94 PSPPRRGRSRRVSSSPLHKTGVHKGASRRILSHSHHPQQRAGAIRSQSLSKDAPSKEVDQVTKRMLSARLLKINELKNAL 173
Cdd:pfam02463 659 AEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 174 SELRLHADE-LQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERSLRERDAQLQr 252
Cdd:pfam02463 739 KLLKQKIDEeEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL- 817
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 253 crsqmQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEV 332
Cdd:pfam02463 818 -----EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 333 ERLCTKLKEKERELDARNiyanrmhkassrkEAENGSKRKGFNITSTKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDD 412
Cdd:pfam02463 893 EKEKEEKKELEEESQKLN-------------LLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEE 959
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 413 YLSLKDQQSREH-RTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQdlssNEKNFKG 491
Cdd:pfam02463 960 ERNKRLLLAKEElGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVS----INKGWNK 1035
|
..
gi 1207165130 492 NR 493
Cdd:pfam02463 1036 VF 1037
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
209-346 |
6.00e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 39.36 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 209 SEISQLLARHNNETHVLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLqqladdqnlgeREELSRKLIGTQSRLQD 288
Cdd:pfam09787 75 TELQELEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYL-----------EEELRRSKATLQSRIKD 143
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207165130 289 SEHRVKELEKNMELS--SGSFQRQLANERRKTHDA----QQEVKALQEEVERLCTKLKEKEREL 346
Cdd:pfam09787 144 REAEIEKLRNQLTSKsqSSSSQSELENRLHQLTETliqkQTMLEALSTEKNSLVLQLERMEQQI 207
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
165-346 |
6.41e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 165 KINELKNALSELRLHADELQRenrllrqlqlrqekalhRYNDTDSEISQLLARHnnETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG4913 611 KLAALEAELAELEEELAEAEE-----------------RLEALEAELDALQERR--EALQRLAEYSWDEIDVASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 245 ERDAQLQRCRSQMQKLQQLAD---------DQNLGEREELSRKLIGTQSRLQDSEHRVKELEK---NMELSSGSFQRQLA 312
Cdd:COG4913 672 ELEAELERLDASSDDLAALEEqleeleaelEELEEELDELKGEIGRLEKELEQAEEELDELQDrleAAEDLARLELRALL 751
|
170 180 190
....*....|....*....|....*....|....*...
gi 1207165130 313 NERRKTHDA----QQEVKALQEEVERLCTKLKEKEREL 346
Cdd:COG4913 752 EERFAAALGdaveRELRENLEERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
224-348 |
6.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 224 VLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLAddqnlgEREELSRKLIGTQSRLQDSEHRVKELEK-NMEL 302
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA------EYSWDEIDVASAEREIAELEAELERLDAsSDDL 687
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1207165130 303 SsgSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDA 348
Cdd:COG4913 688 A--ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDE 731
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
418-558 |
6.66e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 418 DQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKET----LHERERQTELLKDVERQRLDQDLSSNEKNFKGNR 493
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAeearKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE 1252
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207165130 494 GLNREEEDRRIGMSVSQ---KEEEIQKQRELEEEQQKVRNREIQDYNQERVEEERQRKEQLLAKMREI 558
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQaaiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
183-348 |
7.11e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 183 LQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLR---RSQENQRTAERSLRERDAQLQRCRSQmQK 259
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLellDRIEELQELLREAEELEEELQLEELE-QE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 260 LQQLADDQNLGEREELsRKLIGTQSRLQDSEHRVKELEKNMELSSGSFQRQLANE-----RRKTHDAQQEVKALQEEVER 334
Cdd:COG4717 372 IAALLAEAGVEDEEEL-RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeeelEEELEELEEELEELEEELEE 450
|
170
....*....|....
gi 1207165130 335 LCTKLKEKERELDA 348
Cdd:COG4717 451 LREELAELEAELEQ 464
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
164-355 |
8.37e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 8.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 164 LKINELKNALSELRLHADELQREnrllrqlQLRQEKALHRY------NDTDSEISQLLARHNNethvLRERLRRSQENQR 237
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKE-------LEEAEAALEEFrqknglVDLSEEAKLLLQQLSE----LESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207165130 238 TAERSLRERDAQLQRCRSQMQKLQQLADDQNLGERE-ELSRKLIGTQSRLQDS-------EHRVKELEKNMELSSGSFQR 309
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLaELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQRILA 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1207165130 310 QLANERRKthdAQQEVKALQEEVERLCTKLK---EKERELDA--RNIYANR 355
Cdd:COG3206 317 SLEAELEA---LQAREASLQAQLAQLEARLAelpELEAELRRleREVEVAR 364
|
|
| |
