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Conserved domains on  [gi|1191016059|ref|XP_020875315|]
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LOW QUALITY PROTEIN: probable disease resistance protein RPP1 [Arabidopsis lyrata subsp. lyrata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03210 super family cl33662
Resistant to P. syringae 6; Provisional
 59-1024 0e+00

Resistant to P. syringae 6; Provisional


The actual alignment was detected with superfamily member PLN03210:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 866.50  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   59 RIWTHHVFPSFRGEDVRRDFLSHIQMEFQRMGITPFIDNEIKRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELA 138
Cdd:PLN03210     9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  139 EIMKCREELGQTVLAVFYKVDPSDVKKLTGDFGKVFKKTCAGKTKEHVGRWRQALANVATIAGYHSTNWDNEAAMIKKIA 218
Cdd:PLN03210    89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  219 TDISNMLnNSASSSDFDGLVGMREHLEKMEPLLCLDSDEVRLIGIWGPSGIGKTTIARVIYNKLSGSFQLSVFME----- 293
Cdd:PLN03210   169 NDVLGKL-NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDrafis 247

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  294 -SIEAkYTRPCSDDYSAKLQLQQQFMSQITNQSDMKISHLGVVQDRLKDKKVLVVLDGVDQSMQLDAMAKETWWFGPGSR 372
Cdd:PLN03210   248 kSMEI-YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSR 326

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  373 IIITTQDRKLFRAHGINHIYKVDFPSTEEALQILCKYAFGQNSPTHGFEELAWEVTQLAGELPLGLRVIGSYFRGMSKME 452
Cdd:PLN03210   327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  453 WMKALPRLRNSLDANILSILKFSYDALDD-EDKYLFLHIACFFNHEEIEKVEDYLAETFLDVSHRLNVLAEKSLISLNRG 531
Cdd:PLN03210   407 WMDMLPRLRNGLDGKIEKTLRVSYDGLNNkKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRED 486

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  532 YINMHDLLVKLGRDIVRKQSiREPGQRLFLVDAREICEVLNlDANGSRSLMGINFNFGEdriKEKLHISERAFQGMSNLQ 611
Cdd:PLN03210   487 IVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLE-DNTGTKKVLGITLDIDE---IDELHIHENAFKGMRNLL 561

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  612 FLRV------KGNNNTIHLPHGLEYISRKLRLLHWTYFPMTCLPPIFNTEFLVELDMSYSKLEKLWEGIKPLPNLKRMDL 685
Cdd:PLN03210   562 FLKFytkkwdQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  686 SSSLLLKELPDLiGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPSSIgNLINLKELDLSSLSCLVE 765
Cdd:PLN03210   642 RGSKNLKEIPDL-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  766 LPFSIGNATNLEV-----------------LNLRQCS---------------------------------SLVKLPFSIG 795
Cdd:PLN03210   720 FPDISTNISWLDLdetaieefpsnlrlenlDELILCEmkseklwervqpltplmtmlspsltrlflsdipSLVELPSSIQ 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  796 NLQKLQTLTLRGCSKLEDLPANIKLGSLGELDLTDCLLLKRFPEISTNVEFLRLDGTAIEEVPSSIKSWSRLNEVDMSYS 875
Cdd:PLN03210   800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  876 ENLknfphafdiitelhmtnteiQEFPPWVKKFSRLTVLILKGCKKL--VSLPQIPDSITYIYAEDCESLErldcsfhnP 953
Cdd:PLN03210   880 NNL--------------------QRVSLNISKLKHLETVDFSDCGALteASWNGSPSEVAMATDNIHSKLP--------S 931

                          970       980       990      1000      1010      1020      1030
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1191016059  954 NICLKFAKCFKLNQEArdLIIQTPTSNYAVLPGREVPAYFTHQsTTGGSLTI--KLNEKPLPTSMRFKACILL 1024
Cdd:PLN03210   932 TVCINFINCFNLDQEA--LLQQQSIFKQLILSGEEVPSYFTHR-TTGASLTNipLLHISPCQPFFRFRACAVV 1001
C-JID super family cl45530
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ...
 984-1095 1.97e-10

C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.


The actual alignment was detected with superfamily member pfam20160:

Pssm-ID: 466313  Cd Length: 108  Bit Score: 59.00  E-value: 1.97e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  984 LPGREVPAYFTHQStTGGSLTIKLNEKPL-PTSMRFKACILLVHKGdnearDDKNWMdenvyivscnESTHYLYPVLAEH 1062
Cdd:pfam20160    1 LPGSQIPEWFNHQS-TGSSISIKLPENWYnDNFLGFAVCAVGSLIP-----SLHNFL----------GYIHFFLIPLVSL 64

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1191016059 1063 VYVFEVEADVTSSELVFE--FKISSKNWKIKECGV 1095
Cdd:pfam20160   65 WDTSKANGKTPNDYGRIEasFEFPSDLHEIKQCGV 99
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 59-1024 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 866.50  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   59 RIWTHHVFPSFRGEDVRRDFLSHIQMEFQRMGITPFIDNEIKRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELA 138
Cdd:PLN03210     9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  139 EIMKCREELGQTVLAVFYKVDPSDVKKLTGDFGKVFKKTCAGKTKEHVGRWRQALANVATIAGYHSTNWDNEAAMIKKIA 218
Cdd:PLN03210    89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  219 TDISNMLnNSASSSDFDGLVGMREHLEKMEPLLCLDSDEVRLIGIWGPSGIGKTTIARVIYNKLSGSFQLSVFME----- 293
Cdd:PLN03210   169 NDVLGKL-NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDrafis 247

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  294 -SIEAkYTRPCSDDYSAKLQLQQQFMSQITNQSDMKISHLGVVQDRLKDKKVLVVLDGVDQSMQLDAMAKETWWFGPGSR 372
Cdd:PLN03210   248 kSMEI-YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSR 326

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  373 IIITTQDRKLFRAHGINHIYKVDFPSTEEALQILCKYAFGQNSPTHGFEELAWEVTQLAGELPLGLRVIGSYFRGMSKME 452
Cdd:PLN03210   327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  453 WMKALPRLRNSLDANILSILKFSYDALDD-EDKYLFLHIACFFNHEEIEKVEDYLAETFLDVSHRLNVLAEKSLISLNRG 531
Cdd:PLN03210   407 WMDMLPRLRNGLDGKIEKTLRVSYDGLNNkKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRED 486

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  532 YINMHDLLVKLGRDIVRKQSiREPGQRLFLVDAREICEVLNlDANGSRSLMGINFNFGEdriKEKLHISERAFQGMSNLQ 611
Cdd:PLN03210   487 IVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLE-DNTGTKKVLGITLDIDE---IDELHIHENAFKGMRNLL 561

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  612 FLRV------KGNNNTIHLPHGLEYISRKLRLLHWTYFPMTCLPPIFNTEFLVELDMSYSKLEKLWEGIKPLPNLKRMDL 685
Cdd:PLN03210   562 FLKFytkkwdQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  686 SSSLLLKELPDLiGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPSSIgNLINLKELDLSSLSCLVE 765
Cdd:PLN03210   642 RGSKNLKEIPDL-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  766 LPFSIGNATNLEV-----------------LNLRQCS---------------------------------SLVKLPFSIG 795
Cdd:PLN03210   720 FPDISTNISWLDLdetaieefpsnlrlenlDELILCEmkseklwervqpltplmtmlspsltrlflsdipSLVELPSSIQ 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  796 NLQKLQTLTLRGCSKLEDLPANIKLGSLGELDLTDCLLLKRFPEISTNVEFLRLDGTAIEEVPSSIKSWSRLNEVDMSYS 875
Cdd:PLN03210   800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  876 ENLknfphafdiitelhmtnteiQEFPPWVKKFSRLTVLILKGCKKL--VSLPQIPDSITYIYAEDCESLErldcsfhnP 953
Cdd:PLN03210   880 NNL--------------------QRVSLNISKLKHLETVDFSDCGALteASWNGSPSEVAMATDNIHSKLP--------S 931

                          970       980       990      1000      1010      1020      1030
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1191016059  954 NICLKFAKCFKLNQEArdLIIQTPTSNYAVLPGREVPAYFTHQsTTGGSLTI--KLNEKPLPTSMRFKACILL 1024
Cdd:PLN03210   932 TVCINFINCFNLDQEA--LLQQQSIFKQLILSGEEVPSYFTHR-TTGASLTNipLLHISPCQPFFRFRACAVV 1001
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 63-228 8.94e-66

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 218.77  E-value: 8.94e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   63 HHVFPSFRGEDVRRDFLSHIQMEFQRMGITPFID-NEIKRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELAEIM 141
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  142 KCREELGQTVLAVFYKVDPSDVKKLTGDFGKVFKKTCAGKTKEHVGRWRQALANVATIagYHSTNWDNEAAMIKKIATDI 221
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158


                   ....*..
gi 1191016059  222 SNMLNNS 228
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
62-199 8.99e-39

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 140.92  E-value: 8.99e-39
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059    62 THHVFPSFRG-EDVRRDFLSHIQMEFQRMGITPFIDNEIkRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELAEI 140
Cdd:smart00255    1 EYDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191016059   141 MKCREELGQ-TVLAVFYKVDPSDVKKLTGDFGKVFKKTCAGKTKEHVGR-WRQALANVATI 199
Cdd:smart00255   80 LENALEEGGlRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
613-833 1.45e-28

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 119.65  E-value: 1.45e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  613 LRVKGNNNTIHLPHGLEYISRKLRLLHWTYFPMTCLPPIFNTEFLVELDMSYSKLEKLWEGIKPLPNLKRMDlSSSLLLK 692
Cdd:COG4886     71 LLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELD-LSNNQLT 149

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  693 ELPDLIGNLINLKELDLSSlSCLVELPSSIGNLINLKELDLSSlSCLVELPSSIGNLINLKELDLSSlSCLVELPFSIGN 772
Cdd:COG4886    150 DLPEPLGNLTNLKSLDLSN-NQLTDLPEELGNLTNLKELDLSN-NQITDLPEPLGNLTNLEELDLSG-NQLTDLPEPLAN 226

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191016059  773 ATNLEVLNLRQCsSLVKLPfSIGNLQKLQTLTLRGCsKLEDLPANIKLGSLGELDLTDCLL 833
Cdd:COG4886    227 LTNLETLDLSNN-QLTDLP-ELGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNQL 284
C-JID pfam20160
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ...
 984-1095 1.97e-10

C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.


Pssm-ID: 466313  Cd Length: 108  Bit Score: 59.00  E-value: 1.97e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  984 LPGREVPAYFTHQStTGGSLTIKLNEKPL-PTSMRFKACILLVHKGdnearDDKNWMdenvyivscnESTHYLYPVLAEH 1062
Cdd:pfam20160    1 LPGSQIPEWFNHQS-TGSSISIKLPENWYnDNFLGFAVCAVGSLIP-----SLHNFL----------GYIHFFLIPLVSL 64

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1191016059 1063 VYVFEVEADVTSSELVFE--FKISSKNWKIKECGV 1095
Cdd:pfam20160   65 WDTSKANGKTPNDYGRIEasFEFPSDLHEIKQCGV 99
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 59-1024 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 866.50  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   59 RIWTHHVFPSFRGEDVRRDFLSHIQMEFQRMGITPFIDNEIKRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELA 138
Cdd:PLN03210     9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  139 EIMKCREELGQTVLAVFYKVDPSDVKKLTGDFGKVFKKTCAGKTKEHVGRWRQALANVATIAGYHSTNWDNEAAMIKKIA 218
Cdd:PLN03210    89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  219 TDISNMLnNSASSSDFDGLVGMREHLEKMEPLLCLDSDEVRLIGIWGPSGIGKTTIARVIYNKLSGSFQLSVFME----- 293
Cdd:PLN03210   169 NDVLGKL-NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDrafis 247

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  294 -SIEAkYTRPCSDDYSAKLQLQQQFMSQITNQSDMKISHLGVVQDRLKDKKVLVVLDGVDQSMQLDAMAKETWWFGPGSR 372
Cdd:PLN03210   248 kSMEI-YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSR 326

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  373 IIITTQDRKLFRAHGINHIYKVDFPSTEEALQILCKYAFGQNSPTHGFEELAWEVTQLAGELPLGLRVIGSYFRGMSKME 452
Cdd:PLN03210   327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  453 WMKALPRLRNSLDANILSILKFSYDALDD-EDKYLFLHIACFFNHEEIEKVEDYLAETFLDVSHRLNVLAEKSLISLNRG 531
Cdd:PLN03210   407 WMDMLPRLRNGLDGKIEKTLRVSYDGLNNkKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRED 486

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  532 YINMHDLLVKLGRDIVRKQSiREPGQRLFLVDAREICEVLNlDANGSRSLMGINFNFGEdriKEKLHISERAFQGMSNLQ 611
Cdd:PLN03210   487 IVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLE-DNTGTKKVLGITLDIDE---IDELHIHENAFKGMRNLL 561

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  612 FLRV------KGNNNTIHLPHGLEYISRKLRLLHWTYFPMTCLPPIFNTEFLVELDMSYSKLEKLWEGIKPLPNLKRMDL 685
Cdd:PLN03210   562 FLKFytkkwdQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  686 SSSLLLKELPDLiGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPSSIgNLINLKELDLSSLSCLVE 765
Cdd:PLN03210   642 RGSKNLKEIPDL-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  766 LPFSIGNATNLEV-----------------LNLRQCS---------------------------------SLVKLPFSIG 795
Cdd:PLN03210   720 FPDISTNISWLDLdetaieefpsnlrlenlDELILCEmkseklwervqpltplmtmlspsltrlflsdipSLVELPSSIQ 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  796 NLQKLQTLTLRGCSKLEDLPANIKLGSLGELDLTDCLLLKRFPEISTNVEFLRLDGTAIEEVPSSIKSWSRLNEVDMSYS 875
Cdd:PLN03210   800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  876 ENLknfphafdiitelhmtnteiQEFPPWVKKFSRLTVLILKGCKKL--VSLPQIPDSITYIYAEDCESLErldcsfhnP 953
Cdd:PLN03210   880 NNL--------------------QRVSLNISKLKHLETVDFSDCGALteASWNGSPSEVAMATDNIHSKLP--------S 931

                          970       980       990      1000      1010      1020      1030
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1191016059  954 NICLKFAKCFKLNQEArdLIIQTPTSNYAVLPGREVPAYFTHQsTTGGSLTI--KLNEKPLPTSMRFKACILL 1024
Cdd:PLN03210   932 TVCINFINCFNLDQEA--LLQQQSIFKQLILSGEEVPSYFTHR-TTGASLTNipLLHISPCQPFFRFRACAVV 1001
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 63-228 8.94e-66

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 218.77  E-value: 8.94e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   63 HHVFPSFRGEDVRRDFLSHIQMEFQRMGITPFID-NEIKRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELAEIM 141
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  142 KCREELGQTVLAVFYKVDPSDVKKLTGDFGKVFKKTCAGKTKEHVGRWRQALANVATIagYHSTNWDNEAAMIKKIATDI 221
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158


                   ....*..
gi 1191016059  222 SNMLNNS 228
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
62-199 8.99e-39

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 140.92  E-value: 8.99e-39
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059    62 THHVFPSFRG-EDVRRDFLSHIQMEFQRMGITPFIDNEIkRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELAEI 140
Cdd:smart00255    1 EYDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191016059   141 MKCREELGQ-TVLAVFYKVDPSDVKKLTGDFGKVFKKTCAGKTKEHVGR-WRQALANVATI 199
Cdd:smart00255   80 LENALEEGGlRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
613-833 1.45e-28

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 119.65  E-value: 1.45e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  613 LRVKGNNNTIHLPHGLEYISRKLRLLHWTYFPMTCLPPIFNTEFLVELDMSYSKLEKLWEGIKPLPNLKRMDlSSSLLLK 692
Cdd:COG4886     71 LLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELD-LSNNQLT 149

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  693 ELPDLIGNLINLKELDLSSlSCLVELPSSIGNLINLKELDLSSlSCLVELPSSIGNLINLKELDLSSlSCLVELPFSIGN 772
Cdd:COG4886    150 DLPEPLGNLTNLKSLDLSN-NQLTDLPEELGNLTNLKELDLSN-NQITDLPEPLGNLTNLEELDLSG-NQLTDLPEPLAN 226

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191016059  773 ATNLEVLNLRQCsSLVKLPfSIGNLQKLQTLTLRGCsKLEDLPANIKLGSLGELDLTDCLL 833
Cdd:COG4886    227 LTNLETLDLSNN-QLTDLP-ELGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNQL 284
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
653-920 1.46e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 110.79  E-value: 1.46e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  653 NTEFLVELDMSYSKLEKLWEGIKPLPNLKRMDLSSSLLLKELPDLIGNLINLKELDLSSlsclvelPSSIGNLINLKELD 732
Cdd:COG4886     47 LLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSG-------NEELSNLTNLESLD 119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  733 LSSLScLVELPSSIGNLINLKELDLSSlSCLVELPFSIGNATNLEVLNLRQCSsLVKLPFSIGNLQKLQTLTLRGCsKLE 812
Cdd:COG4886    120 LSGNQ-LTDLPEELANLTNLKELDLSN-NQLTDLPEPLGNLTNLKSLDLSNNQ-LTDLPEELGNLTNLKELDLSNN-QIT 195

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  813 DLPAniklgSLGELdltdclllkrfpeisTNVEFLRLDGTAIEEVPSSIKSWSRLNEVDMSYSE-----NLKNFPHafdi 887
Cdd:COG4886    196 DLPE-----PLGNL---------------TNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQltdlpELGNLTN---- 251

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1191016059  888 ITELHMTNTEIQEFPPwVKKFSRLTVLILKGCK 920
Cdd:COG4886    252 LEELDLSNNQLTDLPP-LANLTNLKTLDLSNNQ 283
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
657-986 2.22e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.84  E-value: 2.22e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  657 LVELDMSYSKLEKLWEGIKPLPNLKRMDLSSSLLLKELPDLIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSL 736
Cdd:COG4886      1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  737 SCLVEL--PSSIGNLINLKELDLSSLSclvelpfSIGNATNLEVLNLRQCsSLVKLPFSIGNLQKLQTLTLRGCsKLEDL 814
Cdd:COG4886     81 LLSLLLlgLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNN-QLTDL 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  815 PANI-KLGSLGELDLTDClLLKRFP-EIS--TNVEFLRLDGTAIEEVPSSIKSWSRLNEVDMSY------SENLKNFPHa 884
Cdd:COG4886    152 PEPLgNLTNLKSLDLSNN-QLTDLPeELGnlTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGnqltdlPEPLANLTN- 229

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  885 fdiITELHMTNTEIQEFpPWVKKFSRLTVLILKGCKklvsLPQIPDSityiyaEDCESLERLDCSfHNPNICLKFAKCFK 964
Cdd:COG4886    230 ---LETLDLSNNQLTDL-PELGNLTNLEELDLSNNQ----LTDLPPL------ANLTNLKTLDLS-NNQLTDLKLKELEL 294

                          330       340
                   ....*....|....*....|..
gi 1191016059  965 LNQEARDLIIQTPTSNYAVLPG 986
Cdd:COG4886    295 LLGLNSLLLLLLLLNLLELLIL 316
NB-ARC pfam00931
NB-ARC domain;
253-477 3.19e-17

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 82.43  E-value: 3.19e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  253 LDSDEVRLIGIWGPSGIGKTTIARVIYNKLSgsfqlsvfmeSIEAKYtrpcsdDYSAKLQLQQQFMSQITNQSDMKISHL 332
Cdd:pfam00931   13 SEKDEPGIVGIHGMGGVGKTTLAAQIFNDFD----------EVEGHF------DSVAWVVVSKTFTISTLQQTILQNLGL 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  333 ----------GVVQDR----LKDKKVLVVLDGVDQSMQLDAMAKETWWFGPGSRIIITTQDRKLFRAHGINH-IYKVDFP 397
Cdd:pfam00931   77 seddwdnkeeGELARKirraLLTKRFLLVLDDVWDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAGRVGGPSdPHEVELL 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  398 STEEALQILCKYAFGQNSPTH-GFEELAWEVTQLAGELPLGLRVIGSYFRGMSKM-EWMKALPRLRNSLDAN------IL 469
Cdd:pfam00931  157 EPDEAWELFENKVFPKTLGECeLLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTVeEWKHVYDVLQSELKSNsyslnsVR 236


                   ....*...
gi 1191016059  470 SILKFSYD 477
Cdd:pfam00931  237 SILQLSYE 244
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 65-162 7.22e-14

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 68.88  E-value: 7.22e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   65 VFPSFRGEDvrRDFLSHIQMEFQRMGITPFID-NEIKRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELAEIMKc 143
Cdd:pfam13676    1 VFISYAGED--RAWAEWLADALEAAGYRVWLDrWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEAALA- 77

                           90
                   ....*....|....*....
gi 1191016059  144 REELGQTVLAVFYKVDPSD 162
Cdd:pfam13676   78 DPEGRKRLIPVRLECDLEL 96
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 677-946 8.81e-13

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 72.96  E-value: 8.81e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  677 LPNLKRMDLSSSLLLKELPDLIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPSSIGNLINLKELD 756
Cdd:PLN00113   139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  757 LSSLSCLVELPFSIGNATNLEVLNLRQCSSLVKLPFSIGNLQKLQTLTLRGCSKLEDLPANI-KLGSLGELDLTDCLLLK 835
Cdd:PLN00113   219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIfSLQKLISLDLSDNSLSG 298

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  836 RFPEIST---NVEFLRLDGTAIE-EVPSSIKSWSRLnEVDMSYSENL-----KNFPHAFDIITELHMTNTEIQEFPPWVK 906
Cdd:PLN00113   299 EIPELVIqlqNLEILHLFSNNFTgKIPVALTSLPRL-QVLQLWSNKFsgeipKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1191016059  907 KFSRLTVLILKGCkklvSLP-QIPDSITyiyaeDCESLERL 946
Cdd:PLN00113   378 SSGNLFKLILFSN----SLEgEIPKSLG-----ACRSLRRV 409
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
603-944 2.12e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 70.35  E-value: 2.12e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  603 AFQGMSNLQFLRVKGNNntihlphgleyisrklrllhwtyfpmtclppifnteflveldmsyskleklwegikplpnlkr 682
Cdd:COG4886    154 PLGNLTNLKSLDLSNNQ--------------------------------------------------------------- 170

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  683 mdlsssllLKELPDLIGNLINLKELDLSSlSCLVELPSSIGNLINLKELDLSSlSCLVELPSSIGNLINLKELDLSSlSC 762
Cdd:COG4886    171 --------LTDLPEELGNLTNLKELDLSN-NQITDLPEPLGNLTNLEELDLSG-NQLTDLPEPLANLTNLETLDLSN-NQ 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  763 LVELPfSIGNATNLEVLNLRQCsSLVKLPFSiGNLQKLQTLTLRGCsKLEDLpaniKLGSLGELDLTDCLLLKRFPEIST 842
Cdd:COG4886    240 LTDLP-ELGNLTNLEELDLSNN-QLTDLPPL-ANLTNLKTLDLSNN-QLTDL----KLKELELLLGLNSLLLLLLLLNLL 311

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  843 NVEFLRLDGTAI-EEVPSSIKSWSRLNEVDMSYSENLKNFPHAFDIITELHMTNTEIQEFPPWVKKFSRLTVLILKGCKK 921
Cdd:COG4886    312 ELLILLLLLTTLlLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLL 391

                          330       340
                   ....*....|....*....|...
gi 1191016059  922 LVSLPQIPDSITYIYAEDCESLE 944
Cdd:COG4886    392 LLLTTTAGVLLLTLALLDAVNTE 414
PLN03194 PLN03194
putative disease resistance protein; Provisional
 63-164 1.05e-10

putative disease resistance protein; Provisional


Pssm-ID: 215626 [Multi-domain]  Cd Length: 187  Bit Score: 62.15  E-value: 1.05e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   63 HHVFPSFRGEDVRRDFLSHIQMEFQRMGITPFIDNE-IKRGQSIGPELIRAIRESKIAIILLSRNYASSSWCLDELAEIM 141
Cdd:PLN03194    27 CDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKnMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIM 106

                           90       100
                   ....*....|....*....|...
gi 1191016059  142 KCREElgqtVLAVFYKVDPSDVK 164
Cdd:PLN03194   107 ESKKR----VIPIFCDVKPSQLR 125
C-JID pfam20160
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ...
 984-1095 1.97e-10

C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.


Pssm-ID: 466313  Cd Length: 108  Bit Score: 59.00  E-value: 1.97e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  984 LPGREVPAYFTHQStTGGSLTIKLNEKPL-PTSMRFKACILLVHKGdnearDDKNWMdenvyivscnESTHYLYPVLAEH 1062
Cdd:pfam20160    1 LPGSQIPEWFNHQS-TGSSISIKLPENWYnDNFLGFAVCAVGSLIP-----SLHNFL----------GYIHFFLIPLVSL 64

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1191016059 1063 VYVFEVEADVTSSELVFE--FKISSKNWKIKECGV 1095
Cdd:pfam20160   65 WDTSKANGKTPNDYGRIEasFEFPSDLHEIKQCGV 99
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 607-931 1.99e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 58.71  E-value: 1.99e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  607 MSNLQFLRVKGNNNTIHLPHGLEyisrKLRLLHWTYFPMTCLPPIFNTEF-----LVELDMSYSKL-------------- 667
Cdd:PLN00113   187 LTSLEFLTLASNQLVGQIPRELG----QMKSLKWIYLGYNNLSGEIPYEIggltsLNHLDLVYNNLtgpipsslgnlknl 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  668 -------EKLWEGIKP----LPNLKRMDLSSSLLLKELPDLIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSL 736
Cdd:PLN00113   263 qylflyqNKLSGPIPPsifsLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  737 SCLVELPSSIGNLINLKELDLSSLSCLVELPFSIGNATNLEVLNLRQCSSLVKLPFSIGNLQKLQTLTLRGCSKLEDLPA 816
Cdd:PLN00113   343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  817 NI-KLGSLGELDLTDCLLLKRFPEISTNVEFLRLDGTAIE----EVPSSIKSwSRLNEVDMSYSENLKNFPHAFdiitel 891
Cdd:PLN00113   423 EFtKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNkffgGLPDSFGS-KRLENLDLSRNQFSGAVPRKL------ 495

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*...
gi 1191016059  892 hMTNTEIQEFPPWVKKFSRLTVLILKGCKKLVSLP--------QIPDS 931
Cdd:PLN00113   496 -GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDlshnqlsgQIPAS 542
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 653-873 9.04e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 56.39  E-value: 9.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  653 NTEFLVELDMSYSKLE-KLWEGIKPLPNLKRMDLSSSLLLKELPDLIGNLI-NLKELDLSSLSCLVELPSsiGNLINLKE 730
Cdd:PLN00113    67 NSSRVVSIDLSGKNISgKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPR--GSIPNLET 144

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  731 LDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPFSIGNATNLEVLNLRQCSSLVKLPFSIGNLQKLQTLTLrGCSK 810
Cdd:PLN00113   145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL-GYNN 223

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1191016059  811 LE-DLPANI-KLGSLGELDLTDCLLLKRFPEI---STNVEFLRLDGTAIE-EVPSSIKSWSRLNEVDMS 873
Cdd:PLN00113   224 LSgEIPYEIgGLTSLNHLDLVYNNLTGPIPSSlgnLKNLQYLFLYQNKLSgPIPPSIFSLQKLISLDLS 292
LRR_3 pfam07725
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the ...
 656-675 4.54e-06

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model.


Pssm-ID: 429621 [Multi-domain]  Cd Length: 20  Bit Score: 43.87  E-value: 4.54e-06
                           10        20
                   ....*....|....*....|
gi 1191016059  656 FLVELDMSYSKLEKLWEGIK 675
Cdd:pfam07725    1 NLVELNMPYSKLEKLWEGVK 20
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 660-800 6.63e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 50.62  E-value: 6.63e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  660 LDMSYSKLE-----KLWEgikpLPNLKRMDLSSSLLLKELPDLIGNlINLKELDLSSLSCLVELPSSIGNLINLKELDLS 734
Cdd:PLN00113   433 LDISNNNLQgrinsRKWD----MPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191016059  735 SLSCLVELPSSIGNLINLKELDLSSLSCLVELPFSIGNATNLEVLNLRQCSSLVKLPFSIGNLQKL 800
Cdd:PLN00113   508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573
NACHT COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
238-575 1.43e-05

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 444362 [Multi-domain]  Cd Length: 935  Bit Score: 49.42  E-value: 1.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  238 VGMREHLEKMEPLLCLDSDEVRLIgIWGPSGIGKTTIARVI-----YNKLSGSFQLSVFmesIEAKytrpcsdDYSAKLQ 312
Cdd:COG5635    161 LNLLERIESLKRLELLEAKKKRLL-ILGEPGSGKTTLLRYLalelaERYLDAEDPIPIL---IELR-------DLAEEAS 229

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  313 LQQQFMSQITNQSDmkiSHLGVVQDRLKDKKVLVVLDGVD---QSMQLDAMAKETWWFG---PGSRIIITT----QDRKL 382
Cdd:COG5635    230 LEDLLAEALEKRGG---EPEDALERLLRNGRLLLLLDGLDevpDEADRDEVLNQLRRFLeryPKARVIITSrpegYDSSE 306

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  383 FRAHginHIYKV-DFpSTEEALQILCKYAFGQNSPTHGFEELAWEVTQLAgEL---PLGLRVIGSYFRGMSKmewmkaLP 458
Cdd:COG5635    307 LEGF---EVLELaPL-SDEQIEEFLKKWFEATERKAERLLEALEENPELR-ELarnPLLLTLLALLLRERGE------LP 375

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  459 RLRNSLDANILSIL---------KFSYDALDDEDKYLFL-HIA--------CFFNHEEIEK-VEDYLAETfLDVSHRLNV 519
Cdd:COG5635    376 DTRAELYEQFVELLlerwdeqrgLTIYRELSREELRELLsELAlamqengrTEFAREELEEiLREYLGRR-KDAEALLDE 454

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191016059  520 LAEKslislnrgyinmHDLLVKLGRDIVR--KQSIREpgqrlFLVdAREICEVLNLDA 575
Cdd:COG5635    455 LLLR------------TGLLVERGEGRYSfaHRSFQE-----YLA-ARALVEELDEEL 494
PLN03150 PLN03150
hypothetical protein; Provisional
 718-795 6.92e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 46.73  E-value: 6.92e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1191016059  718 LPSSIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPFSIGNATNLEVLNLRQCSSLVKLPFSIG 795
Cdd:PLN03150   434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
PLN03150 PLN03150
hypothetical protein; Provisional
 694-771 9.99e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 46.35  E-value: 9.99e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1191016059  694 LPDLIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPFSIG 771
Cdd:PLN03150   434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
PLN03150 PLN03150
hypothetical protein; Provisional
 742-816 9.99e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 46.35  E-value: 9.99e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1191016059  742 LPSSIGNLINLKELDLSSLSCLVELPFSIGNATNLEVLNLRQCSSLVKLPFSIGNLQKLQTLTLRGCSKLEDLPA 816
Cdd:PLN03150   434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 704-855 1.17e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 46.38  E-value: 1.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  704 LKELDLSSLSCLVELPSSIGNlINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPFSIGNATNLEVLNLRQ 783
Cdd:PLN00113   454 LQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191016059  784 CSSLVKLPFSIGNLQKLQTLTLrGCSKLE-DLPANI-KLGSLGELDLTDCLLLKRFPeiSTNVeFLRLDGTAIE 855
Cdd:PLN00113   533 NQLSGQIPASFSEMPVLSQLDL-SQNQLSgEIPKNLgNVESLVQVNISHNHLHGSLP--STGA-FLAINASAVA 602
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 648-758 5.99e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 44.07  E-value: 5.99e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  648 LPPIFNTEFLVELDMSYSKL-EKLWEGIKPLPNLKRMDLSSSLLLKELPDLIGNLINLKELDLSSLSCLVELPSSIGNLI 726
Cdd:PLN00113   468 LPDSFGSKRLENLDLSRNQFsGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1191016059  727 NLKELDLSSLSCLVELPSSIGNLINLKELDLS 758
Cdd:PLN00113   548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579
CDC6 COG1474
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
263-353 1.66e-03

Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];


Pssm-ID: 441083 [Multi-domain]  Cd Length: 389  Bit Score: 42.14  E-value: 1.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  263 IWGPSGIGKTTIARVIYNKL---SGSFQLSVFMESIEakytrpCSDDYSaklqlQQQFMSQITNQ--SDMKISHLGV--- 334
Cdd:COG1474     56 IYGPTGTGKTAVAKYVLEELeeeAEERGVDVRVVYVN------CRQAST-----RYRVLSRILEElgSGEDIPSTGLstd 124

                           90       100
                   ....*....|....*....|....*.
gi 1191016059  335 -VQDRL------KDKKVLVVLDGVDQ 353
Cdd:COG1474    125 eLFDRLyealdeRDGVLVVVLDEIDY 150
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 679-781 1.83e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 42.53  E-value: 1.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059  679 NLKRMDLSSSLLLKELPDLIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLSSLSCLVELPSSIGNLINLKELDLS 758
Cdd:PLN00113   476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

                           90       100
                   ....*....|....*....|...
gi 1191016059  759 SLSCLVELPFSIGNATNLEVLNL 781
Cdd:PLN00113   556 QNQLSGEIPKNLGNVESLVQVNI 578
RarA COG2256
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ...
 264-289 2.08e-03

Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];


Pssm-ID: 441857 [Multi-domain]  Cd Length: 439  Bit Score: 41.97  E-value: 2.08e-03
                           10        20
                   ....*....|....*....|....*..
gi 1191016059  264 WGPSGIGKTTIARVIYNKLSGSF-QLS 289
Cdd:COG2256     55 WGPPGTGKTTLARLIANATDAEFvALS 81
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 263-307 2.24e-03

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 38.74  E-value: 2.24e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 1191016059  263 IWGPSGIGKTTIARVIYNKLSGSFQLSVfmESIeakYTRPCSDDY 307
Cdd:pfam00910    3 LYGPPGCGKSTLAKYLARALLKKLGLPK--DSV---YSRNPDDDF 42
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 259-391 2.47e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 39.66  E-value: 2.47e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191016059   259 RLIGIWGPSGIGKTTIARVIYNKLSGSFQLSVFMEsieakytrpCSDDYSAKLQLQQQFMSQITNQSDMKISHLGVVQDR 338
Cdd:smart00382    3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID---------GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191016059   339 LKDKKV-LVVLDGVD------QSMQLDAMAKETWWFG----PGSRIIITTQDRKLFRAHGINHI 391
Cdd:smart00382   74 ARKLKPdVLILDEITslldaeQEALLLLLEELRLLLLlkseKNLTVILTTNDEKDLGPALLRRR 137
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
 255-283 6.70e-03

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 39.05  E-value: 6.70e-03
                           10        20
                   ....*....|....*....|....*....
gi 1191016059  255 SDEVRLIGIWGPSGIGKTTIARVIYNKLS 283
Cdd:COG0572      4 SGKPRIIGIAGPSGSGKTTFARRLAEQLG 32
PRK13342 PRK13342
recombination factor protein RarA; Reviewed
 264-289 6.88e-03

recombination factor protein RarA; Reviewed


Pssm-ID: 237355 [Multi-domain]  Cd Length: 413  Bit Score: 40.07  E-value: 6.88e-03
                           10        20
                   ....*....|....*....|....*..
gi 1191016059  264 WGPSGIGKTTIARVIYNKLSGSF-QLS 289
Cdd:PRK13342    42 WGPPGTGKTTLARIIAGATDAPFeALS 68
PRK05480 PRK05480
uridine/cytidine kinase; Provisional
 260-284 9.37e-03

uridine/cytidine kinase; Provisional


Pssm-ID: 235492 [Multi-domain]  Cd Length: 209  Bit Score: 38.60  E-value: 9.37e-03
                           10        20
                   ....*....|....*....|....*
gi 1191016059  260 LIGIWGPSGIGKTTIARVIYNKLSG 284
Cdd:PRK05480     8 IIGIAGGSGSGKTTVASTIYEELGD 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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