NCBI Conserved Domain Search

Conserved domains on [gi|1046859303|ref|XP_017454824|]

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brorin isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

VWC super family

cl17735

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...

217-272

2.51e-06

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.

The actual alignment was detected with superfamily member pfam00093:

Pssm-ID: 450195 Cd Length: 57 Bit Score: 43.95 E-value: 2.51e-06

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046859303 217 CEFRGKTYQTLEEFVVSPCERCRCEaNGEVLCTVSACPQTECVDPVYE--PDQCCPIC 272
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCD-DGKVLCDKIICPPLDCPNPRLEipPGECCPVC 57

Name

Accession

Description

Interval

E-value

VWC

pfam00093

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...

217-272

2.51e-06

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.

Pssm-ID: 278520 Cd Length: 57 Bit Score: 43.95 E-value: 2.51e-06

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046859303 217 CEFRGKTYQTLEEFVVSPCERCRCEaNGEVLCTVSACPQTECVDPVYE--PDQCCPIC 272
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCD-DGKVLCDKIICPPLDCPNPRLEipPGECCPVC 57

VWC

smart00214

von Willebrand factor (vWF) type C domain;

217-272

2.79e-04

von Willebrand factor (vWF) type C domain;

Pssm-ID: 214564 Cd Length: 59 Bit Score: 38.27 E-value: 2.79e-04

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1046859303  217 CEFRGKTYQTLEEFVVSPCERCRCEANGEVLCTVSACPQ-TECVDPVYE--PDQCCPIC 272
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGTTVLCDPVECPPpPDCPNPERVkpPGECCPRC 59

Name

Accession

Description

Interval

E-value

VWC

pfam00093

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...

217-272

2.51e-06

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.

Pssm-ID: 278520 Cd Length: 57 Bit Score: 43.95 E-value: 2.51e-06

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046859303 217 CEFRGKTYQTLEEFVVSPCERCRCEaNGEVLCTVSACPQTECVDPVYE--PDQCCPIC 272
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCD-DGKVLCDKIICPPLDCPNPRLEipPGECCPVC 57

VWC

smart00214

von Willebrand factor (vWF) type C domain;

217-272

2.79e-04

von Willebrand factor (vWF) type C domain;

Pssm-ID: 214564 Cd Length: 59 Bit Score: 38.27 E-value: 2.79e-04

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1046859303  217 CEFRGKTYQTLEEFVVSPCERCRCEANGEVLCTVSACPQ-TECVDPVYE--PDQCCPIC 272
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGTTVLCDPVECPPpPDCPNPERVkpPGECCPRC 59

Amnionless

pfam14828

Amnionless; The amnionless protein forms a complex with cubilin. This complex is necessary for ...

235-272

4.39e-03

Amnionless; The amnionless protein forms a complex with cubilin. This complex is necessary for vitamin B12 uptake.

Pssm-ID: 464340 Cd Length: 449 Bit Score: 38.52 E-value: 4.39e-03

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1046859303 235 CERCRC--EANGEVLCTV--SACPQTECVDPVYEPDQCCPIC 272
Cdd:pfam14828 194 PSGCGCgnDENLERICANvlQRCPPPHCLSPLRPEGHCCDVC 235

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01