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Conserved domains on  [gi|1046900795|ref|XP_017451244|]
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cAMP-regulated phosphoprotein 21 isoform X5 [Rattus norvegicus]

Protein Classification

NUFIP1 domain-containing protein; PAT1 family protein( domain architecture ID 12927641)

NUFIP1 domain-containing protein; nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) functions in the assembly of the large subunit of the ribosome and in telomere maintenance| PAT1 family protein similar to Schizosaccharomyces pombe DNA topoisomerase 2-associated protein PAT1, an activator of decapping that functions as a general and active mechanism of translational repression and required for P-body formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
R3H_encore_like cd02642
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ...
 162-223 1.39e-25

R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


:

Pssm-ID: 100071  Cd Length: 63  Bit Score: 99.98  E-value: 1.39e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046900795 162 DRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG-KSVIINKT 223
Cdd:cd02642     1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
 244-299 8.30e-13

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


:

Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 63.49  E-value: 8.30e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046900795 244 ESQKRFILKRDNSSIDKEDNQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 299
Cdd:pfam12752   1 PPPKMKILRRPSSGSSSSSSAGSSGASSSSGSDSKTLEEREAEYAEARARIFGSSE 56
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 571-799 1.41e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 571 QLSMSRQSSGDTPEPPSgPVYPASLMQAAQPPSYVITSAGQQLSTG--GFSDSGPPISQQVLQA----PPSPQGFVQQPP 644
Cdd:pfam09770  99 QVRFNRQQPAARAAQSS-AQPPASSLPQYQYASQQSQQPSKPVRTGyeKYKEPEPIPDLQVDASlwgvAPKKAAAPAPAP 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 645 PAQMSvyyypsgqyPTSTTQQYRPLASVQY--SAQRSQQIPQTAQQA-------GYQPVLSGQQSFQGLMGVQQSAHSQG 715
Cdd:pfam09770 178 QPAAQ---------PASLPAPSRKMMSLEEveAAMRAQAKKPAQQPApapaqppAAPPAQQAQQQQQFPPQIQQQQQPQQ 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 716 VMSSQQGAPVHGVMVS---YPTMSSYQVPMTQGSQAVPQQTYQPP--IMLPSQTGQ--GSLPATGMPVYCNITPPSPQNN 788
Cdd:pfam09770 249 QPQQPQQHPGQGHPVTilqRPQSPQPDPAQPSIQPQAQQFHQQPPpvPVQPTQILQnpNRLSAARVGYPQNPQPGVQPAP 328

                         250
                  ....*....|.
gi 1046900795 789 LRLMGPHCPSS 799
Cdd:pfam09770 329 AHQAHRQQGSF 339
 
Name Accession Description Interval E-value
R3H_encore_like cd02642
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ...
 162-223 1.39e-25

R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100071  Cd Length: 63  Bit Score: 99.98  E-value: 1.39e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046900795 162 DRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG-KSVIINKT 223
Cdd:cd02642     1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
R3H smart00393
Putative single-stranded nucleic acids-binding domain;
146-223 7.50e-13

Putative single-stranded nucleic acids-binding domain;


Pssm-ID: 214647  Cd Length: 79  Bit Score: 64.63  E-value: 7.50e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  146 IDLHEFLINTLKNNSRDRMILLKMEQEMIDFIAdSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG--KSVIINKT 223
Cdd:smart00393   1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGpkRRVVISKK 79
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
 244-299 8.30e-13

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 63.49  E-value: 8.30e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046900795 244 ESQKRFILKRDNSSIDKEDNQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 299
Cdd:pfam12752   1 PPPKMKILRRPSSGSSSSSSAGSSGASSSSGSDSKTLEEREAEYAEARARIFGSSE 56
R3H pfam01424
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ...
 164-222 6.70e-12

R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.


Pssm-ID: 460206  Cd Length: 60  Bit Score: 60.97  E-value: 6.70e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046900795 164 MILLKMEQEMIDFIADSNNHYKkFPQMSSYQRMLVHRVAAYFGLDHNV--DQTGKSVIINK 222
Cdd:pfam01424   1 EFLEQLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVVYK 60
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 571-799 1.41e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 571 QLSMSRQSSGDTPEPPSgPVYPASLMQAAQPPSYVITSAGQQLSTG--GFSDSGPPISQQVLQA----PPSPQGFVQQPP 644
Cdd:pfam09770  99 QVRFNRQQPAARAAQSS-AQPPASSLPQYQYASQQSQQPSKPVRTGyeKYKEPEPIPDLQVDASlwgvAPKKAAAPAPAP 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 645 PAQMSvyyypsgqyPTSTTQQYRPLASVQY--SAQRSQQIPQTAQQA-------GYQPVLSGQQSFQGLMGVQQSAHSQG 715
Cdd:pfam09770 178 QPAAQ---------PASLPAPSRKMMSLEEveAAMRAQAKKPAQQPApapaqppAAPPAQQAQQQQQFPPQIQQQQQPQQ 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 716 VMSSQQGAPVHGVMVS---YPTMSSYQVPMTQGSQAVPQQTYQPP--IMLPSQTGQ--GSLPATGMPVYCNITPPSPQNN 788
Cdd:pfam09770 249 QPQQPQQHPGQGHPVTilqRPQSPQPDPAQPSIQPQAQQFHQQPPpvPVQPTQILQnpNRLSAARVGYPQNPQPGVQPAP 328

                         250
                  ....*....|.
gi 1046900795 789 LRLMGPHCPSS 799
Cdd:pfam09770 329 AHQAHRQQGSF 339
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 562-698 1.17e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.49  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 562 REEMAAQFSQLSM-SRQSSGDTPEPPSgpvypaslmqAAQPPSYviTSAGQQLSTG---GFSDSGPPISQQVLQAPPSPQ 637
Cdd:TIGR01628 368 RAHLQDQFMQLQPrMRQLPMGSPMGGA----------MGQPPYY--GQGPQQQFNGqplGWPRMSMMPTPMGPGGPLRPN 435

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046900795 638 GFVQQPPPAQMSVYYYPSGQYPTSTTQQYRPLASVQYSAQRSQQIPQTAQQAGYQPVLSGQ 698
Cdd:TIGR01628 436 GLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQV 496
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 548-743 1.40e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.38  E-value: 1.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  548 QHLLPVSPTQHFPLRE-EMAAQFSQLSMSRQSSgdtpEPPSGpVYPASLMQAAQPPSYVITSAGQqlSTGGFSDSGPPIS 626
Cdd:PRK10263   681 QHDVPVNAEDADAAAEaELARQFAQTQQQRYSG----EQPAG-ANPFSLDDFEFSPMKALLDDGP--HEPLFTPIVEPVQ 753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  627 QQVLQAPPSPQGFVQQPPPAQMSVYYYPsgQYPTSTTQQYR-PLASVQYSAQRSQ-QIPQTAQQAGYQPV--LSGQQSFQ 702
Cdd:PRK10263   754 QPQQPVAPQQQYQQPQQPVAPQPQYQQP--QQPVAPQPQYQqPQQPVAPQPQYQQpQQPVAPQPQYQQPQqpVAPQPQYQ 831

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1046900795  703 glmgvqqsAHSQGVMSSQQGAPVHGVMVSYPTMSSYQVPMT 743
Cdd:PRK10263   832 --------QPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTT 864
 
Name Accession Description Interval E-value
R3H_encore_like cd02642
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ...
 162-223 1.39e-25

R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100071  Cd Length: 63  Bit Score: 99.98  E-value: 1.39e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046900795 162 DRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG-KSVIINKT 223
Cdd:cd02642     1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
R3H smart00393
Putative single-stranded nucleic acids-binding domain;
146-223 7.50e-13

Putative single-stranded nucleic acids-binding domain;


Pssm-ID: 214647  Cd Length: 79  Bit Score: 64.63  E-value: 7.50e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  146 IDLHEFLINTLKNNSRDRMILLKMEQEMIDFIAdSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG--KSVIINKT 223
Cdd:smart00393   1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGpkRRVVISKK 79
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
 244-299 8.30e-13

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 63.49  E-value: 8.30e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046900795 244 ESQKRFILKRDNSSIDKEDNQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 299
Cdd:pfam12752   1 PPPKMKILRRPSSGSSSSSSAGSSGASSSSGSDSKTLEEREAEYAEARARIFGSSE 56
R3H cd02325
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ...
 166-222 3.86e-12

R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100064  Cd Length: 59  Bit Score: 61.86  E-value: 3.86e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1046900795 166 LLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG--KSVIINK 222
Cdd:cd02325     1 REEREEELEAFAKDAAGKSLELPPMNSYERKLIHDLAEYYGLKSESEGEGpnRRVVITK 59
R3H pfam01424
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ...
 164-222 6.70e-12

R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.


Pssm-ID: 460206  Cd Length: 60  Bit Score: 60.97  E-value: 6.70e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046900795 164 MILLKMEQEMIDFIADSNNHYKkFPQMSSYQRMLVHRVAAYFGLDHNV--DQTGKSVIINK 222
Cdd:pfam01424   1 EFLEQLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVVYK 60
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 571-799 1.41e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 571 QLSMSRQSSGDTPEPPSgPVYPASLMQAAQPPSYVITSAGQQLSTG--GFSDSGPPISQQVLQA----PPSPQGFVQQPP 644
Cdd:pfam09770  99 QVRFNRQQPAARAAQSS-AQPPASSLPQYQYASQQSQQPSKPVRTGyeKYKEPEPIPDLQVDASlwgvAPKKAAAPAPAP 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 645 PAQMSvyyypsgqyPTSTTQQYRPLASVQY--SAQRSQQIPQTAQQA-------GYQPVLSGQQSFQGLMGVQQSAHSQG 715
Cdd:pfam09770 178 QPAAQ---------PASLPAPSRKMMSLEEveAAMRAQAKKPAQQPApapaqppAAPPAQQAQQQQQFPPQIQQQQQPQQ 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 716 VMSSQQGAPVHGVMVS---YPTMSSYQVPMTQGSQAVPQQTYQPP--IMLPSQTGQ--GSLPATGMPVYCNITPPSPQNN 788
Cdd:pfam09770 249 QPQQPQQHPGQGHPVTilqRPQSPQPDPAQPSIQPQAQQFHQQPPpvPVQPTQILQnpNRLSAARVGYPQNPQPGVQPAP 328

                         250
                  ....*....|.
gi 1046900795 789 LRLMGPHCPSS 799
Cdd:pfam09770 329 AHQAHRQQGSF 339
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 562-698 1.17e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.49  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 562 REEMAAQFSQLSM-SRQSSGDTPEPPSgpvypaslmqAAQPPSYviTSAGQQLSTG---GFSDSGPPISQQVLQAPPSPQ 637
Cdd:TIGR01628 368 RAHLQDQFMQLQPrMRQLPMGSPMGGA----------MGQPPYY--GQGPQQQFNGqplGWPRMSMMPTPMGPGGPLRPN 435

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046900795 638 GFVQQPPPAQMSVYYYPSGQYPTSTTQQYRPLASVQYSAQRSQQIPQTAQQAGYQPVLSGQ 698
Cdd:TIGR01628 436 GLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQV 496
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 548-743 1.40e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.38  E-value: 1.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  548 QHLLPVSPTQHFPLRE-EMAAQFSQLSMSRQSSgdtpEPPSGpVYPASLMQAAQPPSYVITSAGQqlSTGGFSDSGPPIS 626
Cdd:PRK10263   681 QHDVPVNAEDADAAAEaELARQFAQTQQQRYSG----EQPAG-ANPFSLDDFEFSPMKALLDDGP--HEPLFTPIVEPVQ 753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  627 QQVLQAPPSPQGFVQQPPPAQMSVYYYPsgQYPTSTTQQYR-PLASVQYSAQRSQ-QIPQTAQQAGYQPV--LSGQQSFQ 702
Cdd:PRK10263   754 QPQQPVAPQQQYQQPQQPVAPQPQYQQP--QQPVAPQPQYQqPQQPVAPQPQYQQpQQPVAPQPQYQQPQqpVAPQPQYQ 831

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1046900795  703 glmgvqqsAHSQGVMSSQQGAPVHGVMVSYPTMSSYQVPMT 743
Cdd:PRK10263   832 --------QPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTT 864
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 586-777 1.44e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.38  E-value: 1.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  586 PSGPVYPASLMQAAQPPSYVITSAGQQLStggfsdsGPPISQQVLQapPSPQGFVQQPPPAQMSVYYYPSGQYPTSTTQQ 665
Cdd:PRK10263   336 PVEPVTQTPPVASVDVPPAQPTVAWQPVP-------GPQTGEPVIA--PAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQP 406

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  666 YRPLASVQYSAQrsQQIPQTAQQAGYQPVLSGQqsfqglmgVQQSAHSQGVMSSQQGaPVHGVMVSYPTMSSYQVPMTQG 745
Cdd:PRK10263   407 YYAPAAEQPAQQ--PYYAPAPEQPAQQPYYAPA--------PEQPVAGNAWQAEEQQ-STFAPQSTYQTEQTYQQPAAQE 475

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1046900795  746 SQAVPQQTYQPPIMLPSQTGQGSLPATGMPVY 777
Cdd:PRK10263   476 PLYQQPQPVEQQPVVEPEPVVEETKPARPPLY 507
PRK10927 PRK10927
cell division protein FtsN;
612-725 2.34e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 40.82  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 612 QLSTGGFSDSGPPISQQVLQAPPSPQGFVQQPPPAQMSVYYYPSGQYPTSTTQQyrplasvQYSAQRSQQIPQTAQQAGY 691
Cdd:PRK10927  135 QLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQA-------APVQAQPRQSKPASTQQPY 207

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046900795 692 QPVLsgqqsfqglmgvQQSAHSQGVMSSQQGAPV 725
Cdd:PRK10927  208 QDLL------------QTPAHTTAQSKPQQAAPV 229
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
578-701 2.61e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.30  E-value: 2.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795 578 SSGDTPEPPSGP---VYPASLMQAAQPPSYVITSAGQQLSTGGFSDSgPPISQQVLQAPPSPQGFVQQPPPAQMSVyyyP 654
Cdd:PRK14971  364 QKGDDASGGRGPkqhIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ-PSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046900795 655 SGQYPTSTTQQYRP---------LASVQYSAQRSQQIPQTAQQAGYQPVLSGQQSF 701
Cdd:PRK14971  440 PSTAPQAVRPAQFKeekkipvskVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKE 495
R3H_sperm-antigen cd02636
R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. ...
 168-207 3.18e-03

R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100065  Cd Length: 61  Bit Score: 36.54  E-value: 3.18e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1046900795 168 KMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGL 207
Cdd:cd02636     3 SMEKEVSKFIKDSVRTREKFQPMDKVERSIVHDVAEVAGL 42
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 562-783 4.82e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 4.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  562 REEMAAQFSQlsMSRQSSGDTPEPPSgPVYPASLMQAAQPPSYVITSAGQQLSTGGFSDSGP-PISQQVLQAPPSpQGFV 640
Cdd:PRK10263   661 QDELARQFAQ--TQQQRYGEQYQHDV-PVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGAnPFSLDDFEFSPM-KALL 736

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046900795  641 QQPPPAQMsvyyYPSGQYPTSTTQQyRPLASVQYSAQRSQQIPQTAQQAGYQPVLSGQQSFQGLMGVQQSAHSQGVMSSQ 720
Cdd:PRK10263   737 DDGPHEPL----FTPIVEPVQQPQQ-PVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1046900795  721 QGAPvhgvmvsyptmsSYQVPMtqgSQAVPQQTYQPPIMLPSQTGQGSL----------------PATGMPVYCNITPP 783
Cdd:PRK10263   812 APQP------------QYQQPQ---QPVAPQPQYQQPQQPVAPQPQDTLlhpllmrngdsrplhkPTTPLPSLDLLTPP 875
R3H_Smubp-2_like cd02641
R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and ...
 176-220 6.33e-03

R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.


Pssm-ID: 100070  Cd Length: 60  Bit Score: 35.79  E-value: 6.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1046900795 176 FIADSNNHYKKFP-QMSSYQRMLVHRVAAYFGLDHNVDQTGKSVII 220
Cdd:cd02641    11 FMKDPKATELEFPpTLSSHDRLLVHELAEELGLRHESTGEGSDRVI 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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