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Conserved domains on  [gi|1046888548|ref|XP_017448896|]
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serine/arginine repetitive matrix protein 1 isoform X15 [Rattus norvegicus]

Protein Classification

PWI domain-containing protein( domain architecture ID 10478549)

PWI domain-containing protein may function as a splicing factor; similar to Homo sapiens serine/arginine repetitive matrix protein 1 that is involved in numerous pre-mRNA processing events

CATH:  1.20.1390.10
Gene Ontology:  GO:0006397|GO:0003676
PubMed:  10322432|12600940
SCOP:  4000671

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
1-32 8.73e-12

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 60.98  E-value: 8.73e-12
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1046888548   1 MMQINLTGFLNgKNAREFMGELWPLLLSAQEN 32
Cdd:pfam01480  39 ELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 306-734 1.15e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  306 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 385
Cdd:PHA03247  2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  386 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRMQM---- 461
Cdd:PHA03247  2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLppgp 2725

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  462 -GKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 540
Cdd:PHA03247  2726 aAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  541 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPvtkrrsPSLSSKhrKGSSPGRSTRearspqpnKRHSPS 620
Cdd:PHA03247  2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------PSLPLG--GSVAPGGDVR--------RRPPSR 2869

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  621 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 700
Cdd:PHA03247  2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                          410       420       430
                   ....*....|....*....|....*....|....*..
gi 1046888548  701 PPSPVQSQSPSTNWSPAAPAKKAKSP---TPSPSPAR 734
Cdd:PHA03247  2950 AGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSR 2986
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
1-32 8.73e-12

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 60.98  E-value: 8.73e-12
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1046888548   1 MMQINLTGFLNgKNAREFMGELWPLLLSAQEN 32
Cdd:pfam01480  39 ELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03247 PHA03247
large tegument protein UL36; Provisional
 306-734 1.15e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  306 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 385
Cdd:PHA03247  2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  386 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRMQM---- 461
Cdd:PHA03247  2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLppgp 2725

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  462 -GKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 540
Cdd:PHA03247  2726 aAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  541 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPvtkrrsPSLSSKhrKGSSPGRSTRearspqpnKRHSPS 620
Cdd:PHA03247  2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------PSLPLG--GSVAPGGDVR--------RRPPSR 2869

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  621 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 700
Cdd:PHA03247  2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                          410       420       430
                   ....*....|....*....|....*....|....*..
gi 1046888548  701 PPSPVQSQSPSTNWSPAAPAKKAKSP---TPSPSPAR 734
Cdd:PHA03247  2950 AGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSR 2986
PWI smart00311
PWI, domain in splicing factors;
1-32 2.26e-04

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 40.41  E-value: 2.26e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1046888548    1 MMQINLTGFLNgknAREFMGELWPLLLSAQEN 32
Cdd:smart00311  46 LLQINLTGFED---AEEFVDKLWRLLIFELKN 74
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
543-676 4.60e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.42  E-value: 4.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 543 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 622
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1046888548 623 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 676
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
1-32 8.73e-12

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 60.98  E-value: 8.73e-12
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1046888548   1 MMQINLTGFLNgKNAREFMGELWPLLLSAQEN 32
Cdd:pfam01480  39 ELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03247 PHA03247
large tegument protein UL36; Provisional
 306-734 1.15e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  306 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 385
Cdd:PHA03247  2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  386 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRMQM---- 461
Cdd:PHA03247  2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLppgp 2725

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  462 -GKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYS 540
Cdd:PHA03247  2726 aAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  541 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPvtkrrsPSLSSKhrKGSSPGRSTRearspqpnKRHSPS 620
Cdd:PHA03247  2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------PSLPLG--GSVAPGGDVR--------RRPPSR 2869

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  621 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 700
Cdd:PHA03247  2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                          410       420       430
                   ....*....|....*....|....*....|....*..
gi 1046888548  701 PPSPVQSQSPSTNWSPAAPAKKAKSP---TPSPSPAR 734
Cdd:PHA03247  2950 AGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSR 2986
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
541-736 1.30e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.19  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 541 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 617
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 618 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 697
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1046888548 698 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 736
Cdd:PRK12323  534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 538-733 1.52e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.91  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 538 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 617
Cdd:PRK07764  585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 618 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 693
Cdd:PRK07764  665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1046888548 694 TAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 733
Cdd:PRK07764  743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03247 PHA03247
large tegument protein UL36; Provisional
 543-802 5.99e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 5.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  543 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPkqrsPPVTKRRSPSLSSKhrkgSSPGRSTREARSPQPNKRHSPSPr 622
Cdd:PHA03247  2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPA----LPAAPAPPAVPAGP----ATPGGPARPARPPTTAGPPAPAP- 2771

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  623 PRAPQTSSPP--PVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 700
Cdd:PHA03247  2772 PAAPAAGPPRrlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  701 PPSPVQSQSP--------STNWSPAAPAKKAKSPTPSPSPARNSDqegggkKKKKKKDKKHKKDKKHKKHKKHKKEKAVA 772
Cdd:PHA03247  2852 LGGSVAPGGDvrrrppsrSPAAKPAAPARPPVRRLARPAVSRSTE------SFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

                          250       260       270
                   ....*....|....*....|....*....|
gi 1046888548  773 VATPAPAAPAAVSAAATPSAQEEPAAAPEP 802
Cdd:PHA03247  2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PHA03247 PHA03247
large tegument protein UL36; Provisional
 496-733 7.34e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 7.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  496 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSppiqrrySPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 575
Cdd:PHA03247  2566 RSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPV-------DDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEP 2638

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  576 PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNkrhSPSPRPRAPqtSSPPPVRRGASASPQGRQSPSPSTRPI 655
Cdd:PHA03247  2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAS---SPPQRPRRR--AARPTVGSLTSLADPPPPPPTPEPAPH 2713

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046888548  656 RRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPspvqsQSPSTNWSPAAPAKKAKSPTPSPSPA 733
Cdd:PHA03247  2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-----PTTAGPPAPAPPAAPAAGPPRRLTRP 2786
PHA03247 PHA03247
large tegument protein UL36; Provisional
 294-664 2.19e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 2.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  294 SSPPRKTRRLSPSAspPRRRHRPSSPATPPPKTRHSPTPQQSNRarksrvsvSPGRTSGKVTKHKGTEKRESPSPAPKPR 373
Cdd:PHA03247  2590 DAPPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPDPPPPSP--------SPAANEPDPHPPPTVPPPERPRDDPAPG 2659

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  374 KVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQK 453
Cdd:PHA03247  2660 RVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  454 ETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP 533
Cdd:PHA03247  2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  534 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTRE 607
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTES 2897

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046888548  608 ARSPQPNKRHSPSPR-PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 664
Cdd:PHA03247  2898 FALPPDQPERPPQPQaPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PHA03247 PHA03247
large tegument protein UL36; Provisional
 541-810 7.70e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 7.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  541 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSppvtKRRSPSLSSKHRKGSSPGRSTRE------------- 607
Cdd:PHA03247  2614 PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPR----DDPAPGRVSRPRRARRLGRAAQAssppqrprrraar 2689

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  608 ---------ARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP--------IRRVSRTPEPKKIKKA 670
Cdd:PHA03247  2690 ptvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPagpatpggPARPARPPTTAGPPAP 2769

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  671 ASPSPQSVRRVSSSRSVSGSP---------------EPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARN 735
Cdd:PHA03247  2770 APPAAPAAGPPRRLTRPAVASlsesreslpspwdpaDPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  736 SDQEGG-----------------GKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPAA 798
Cdd:PHA03247  2850 LPLGGSvapggdvrrrppsrspaAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP 2929

                          330
                   ....*....|..
gi 1046888548  799 APEPRKETESEA 810
Cdd:PHA03247  2930 QPPPPPPPRPQP 2941
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 598-822 9.12e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 9.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 598 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 677
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 678 VRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDK 757
Cdd:PRK07764  665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1046888548 758 KHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 822
Cdd:PRK07764  745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
PWI smart00311
PWI, domain in splicing factors;
1-32 2.26e-04

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 40.41  E-value: 2.26e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1046888548    1 MMQINLTGFLNgknAREFMGELWPLLLSAQEN 32
Cdd:smart00311  46 LLQINLTGFED---AEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 295-643 3.01e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 3.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  295 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRK 374
Cdd:PHA03307    99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  375 VELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSAspsprkRQKE 454
Cdd:PHA03307   175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSES------SGCG 248

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  455 TSPRMQMGKRWQSPVTkSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPP 534
Cdd:PHA03307   249 WGPENECPLPRPAPIT-LPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  535 IQRRYSPSPppkrRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREARSPQPN 614
Cdd:PHA03307   328 STSSSSESS----RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVAGRAR 399

                          330       340
                   ....*....|....*....|....*....
gi 1046888548  615 KRHSPSPRPRAPQTSSPPPVRRGASASPQ 643
Cdd:PHA03307   400 RRDATGRFPAGRPRPSPLDAGAASGAFYA 428
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 540-705 7.29e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 7.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 540 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 619
Cdd:PRK07764  620 APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPA 699

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 620 SPRPRAPQTSSPPPVRRGASASPQGRQSPS-PSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKP 698
Cdd:PRK07764  700 QPAPAPAATPPAGQADDPAAQPPQAAQGASaPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779


                  ....*..
gi 1046888548 699 PAPPSPV 705
Cdd:PRK07764  780 SEEEEMA 786
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 496-737 8.19e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 8.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  496 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPpiqrrysPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 575
Cdd:PHA03307    77 TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP-------DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPA 149

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  576 PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPI 655
Cdd:PHA03307   150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  656 RRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARN 735
Cdd:PHA03307   230 DDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303


                   ..
gi 1046888548  736 SD 737
Cdd:PHA03307   304 GS 305
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 538-663 1.24e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 538 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPPVTkrrSPSLSSKHRKGSSPGRSTREARSPQPN 614
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1046888548 615 KRH-SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPE 663
Cdd:PRK14951  444 AVAlAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
540-641 1.29e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 540 SPSPPPKRRTASPPPPPKRRASPSPPPKR-------RVSHSPPPKQRSPPVTKRRSP----------SLSSKHRKGSSPG 602
Cdd:PRK12323  455 AAAPAAAARPAAAGPRPVAAAAAAAPARAapaaapaPADDDPPPWEELPPEFASPAPaqpdaapagwVAESIPDPATADP 534

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1046888548 603 RSTREARSPQPNKrhSPSPRPRAPQTSSPPPVRRGASAS 641
Cdd:PRK12323  535 DDAFETLAPAPAA--APAPRAAAATEPVVAPRPPRASAS 571
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
543-676 4.60e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.42  E-value: 4.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 543 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 622
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1046888548 623 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 676
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 542-675 4.97e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.62  E-value: 4.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 542 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK-QRSPPVTKRRSPSLSSKHRKgsspgrSTREARSPQPNKRHSPS 620
Cdd:PRK07994  371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApQQAPAVPLPETTSQLLAARQ------QLQRAQGATKAKKSEPA 444

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1046888548 621 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 675
Cdd:PRK07994  445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 536-654 4.98e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 4.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  536 QRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREAR 609
Cdd:PHA03307   781 QRGAGSSPPVRAEAAFRRPGRLRRSGPAADaasrtaSKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAA 860

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1046888548  610 SPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP 654
Cdd:PHA03307   861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRP 905
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 496-732 5.75e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 5.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  496 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 575
Cdd:PHA03307   128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  576 PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP---SPRPRAPQTSSPPPVRRGASASPQG-RQSPSPS 651
Cdd:PHA03307   208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPeneCPLPRPAPITLPTRIWEASGWNGPSsRPGPASS 287

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  652 TRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPV-------QSQSPSTNWSPAAPAKKAK 724
Cdd:PHA03307   288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVspgpspsRSPSPSRPPPPADPSSPRK 367


                   ....*...
gi 1046888548  725 SPTPSPSP 732
Cdd:PHA03307   368 RPRPSRAP 375
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 536-644 6.08e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 6.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548 536 QRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRvshsPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNK 615
Cdd:PRK07764  401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476

                          90       100
                  ....*....|....*....|....*....
gi 1046888548 616 RHSPSPRPRAPQTSSPPPVRRGASASPQG 644
Cdd:PRK07764  477 TAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 542-813 7.11e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 7.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  542 SPPPKRRTASPPPPPKRRASPSPPpkrrvsHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSP 621
Cdd:PHA03307    53 VTVVAGAAACDRFEPPTGPPPGPG------TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASP 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  622 RPRAPqTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPepkkikkaASPSPQSVRRVSSSRSVSGSPEPTAKKPPAP 701
Cdd:PHA03307   127 PPSPA-PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA--------ASSRQAALPLSSPEETARAPSSPPAEPPPST 197

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  702 PSPVQSQSPSTNWSPAAPAkkakSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAVATPAPAAP 781
Cdd:PHA03307   198 PPAAASPRPPRRSSPISAS----ASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273

                          250       260       270
                   ....*....|....*....|....*....|..
gi 1046888548  782 AAVSAAATPSAQEEPAAAPEPRKETESEAEDD 813
Cdd:PHA03307   274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PHA03247 PHA03247
large tegument protein UL36; Provisional
 295-641 9.76e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 9.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  295 SPPRKTRRLSPSA---SPPRRRHRPSSPATPPPKT---RHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 368
Cdd:PHA03247  2662 SRPRRARRLGRAAqasSPPQRPRRRAARPTVGSLTslaDPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  369 APKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSstsederpkrshvkngeVGRRRRHSPSRSASPSP 448
Cdd:PHA03247  2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA-----------------VASLSESRESLPSPWDP 2804

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  449 RKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSP 528
Cdd:PHA03247  2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVR 2884

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046888548  529 RRYSPPIQRRYS-----PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGR 603
Cdd:PHA03247  2885 RLARPAVSRSTEsfalpPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964

                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1046888548  604 STREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASAS 641
Cdd:PHA03247  2965 GALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLS 3002
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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