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Conserved domains on  [gi|1046872265|ref|XP_017446269|]
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netrin-G1 isoform X4 [Rattus norvegicus]

Protein Classification

calcium-binding EGF-like domain-containing protein( domain architecture ID 11079789)

calcium-binding epidermal growth factor (EGF)-like domain-containing protein may play a crucial role in numerous protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Laminin_N pfam00055
Laminin N-terminal (Domain VI);
50-295 1.56e-77

Laminin N-terminal (Domain VI);


:

Pssm-ID: 459653  Cd Length: 230  Bit Score: 240.56  E-value: 1.56e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265  50 CQPESTDMTKYLKVKldpPDITCG-DPPESFCAMGNP---YMCNnECDASTPELAHPPELMFDFEGRHPSTFWQSATWke 125
Cdd:pfam00055   1 CYPAFGNLAFGREVS---ATSTCGlNGPERYCILSGLeggKKCF-ICDSRDPHNSHPPSNLTDSNNGTNETWWQSETG-- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265 126 YPKPLQVNITLSWSKTIELTDnIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHtvlEII 205
Cdd:pfam00055  75 VIQYENVNLTLDLGKEFHFTY-LILKFKSPRPAAMVLERSTDFGKTWQPYQYFASDCRRTFGRPSGPSRGIKDD---EVI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265 206 CTEEYSTGY-STNSKIIhfeikdrFAFFAGPRLRNMAslygqlDTTKKLRDFFTVTDLRIRLLRPA--VGEIFVDELHLA 282
Cdd:pfam00055 151 CTSEYSDISpLTGGEVI-------FSTLEGRPSANIF------DYSPELQDWLTATNIRIRLLRLHtlGDELLDDPSVLR 217

                         250
                  ....*....|...
gi 1046872265 283 RYFYAISDIKVRG 295
Cdd:pfam00055 218 KYYYAISDISVGG 230
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 296-342 7.70e-08

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


:

Pssm-ID: 238012  Cd Length: 50  Bit Score: 48.50  E-value: 7.70e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1046872265 296 RCKCNLHATMCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
Cdd:cd00055     1 PCDCNGHGSLSGQcDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGG 48
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 373-397 8.32e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


:

Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.85  E-value: 8.32e-04
                          10        20
                  ....*....|....*....|....*...
gi 1046872265 373 CQNGGTCHNNV---RCVCPDAYTGILCE 397
Cdd:cd00054    11 CQNGGTCVNTVgsyRCSCPPGYTGRNCE 38
 
Name Accession Description Interval E-value
Laminin_N pfam00055
Laminin N-terminal (Domain VI);
50-295 1.56e-77

Laminin N-terminal (Domain VI);


Pssm-ID: 459653  Cd Length: 230  Bit Score: 240.56  E-value: 1.56e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265  50 CQPESTDMTKYLKVKldpPDITCG-DPPESFCAMGNP---YMCNnECDASTPELAHPPELMFDFEGRHPSTFWQSATWke 125
Cdd:pfam00055   1 CYPAFGNLAFGREVS---ATSTCGlNGPERYCILSGLeggKKCF-ICDSRDPHNSHPPSNLTDSNNGTNETWWQSETG-- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265 126 YPKPLQVNITLSWSKTIELTDnIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHtvlEII 205
Cdd:pfam00055  75 VIQYENVNLTLDLGKEFHFTY-LILKFKSPRPAAMVLERSTDFGKTWQPYQYFASDCRRTFGRPSGPSRGIKDD---EVI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265 206 CTEEYSTGY-STNSKIIhfeikdrFAFFAGPRLRNMAslygqlDTTKKLRDFFTVTDLRIRLLRPA--VGEIFVDELHLA 282
Cdd:pfam00055 151 CTSEYSDISpLTGGEVI-------FSTLEGRPSANIF------DYSPELQDWLTATNIRIRLLRLHtlGDELLDDPSVLR 217

                         250
                  ....*....|...
gi 1046872265 283 RYFYAISDIKVRG 295
Cdd:pfam00055 218 KYYYAISDISVGG 230
LamNT smart00136
Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related ...
 71-295 2.00e-40

Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.


Pssm-ID: 214532  Cd Length: 238  Bit Score: 144.43  E-value: 2.00e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265   71 TCGDP-PESFCAMgNPYMCNNE----CDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKplQVNITLSWSKTIELT 145
Cdd:smart00136  25 TCGEPgPERYCKL-VGHTEQGKkcdyCDARNPRRSHPAENLTDGNNPNNPTWWQSEPLSNGPQ--NVNLTLDLGKEFHVT 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265  146 dNIVITFESGRPDQMILEKSlDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHTvlEIICTEEYS-TGYSTNSKIIHFE 224
Cdd:smart00136 102 -YVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNED--EVICTSEYSdIVPLEGGEIAFSL 177

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046872265  225 IKDRfaffagPRLRNmaslygqLDTTKKLRDFFTVTDLRIRLLRPAV--GEIFVDELH-LARYFYAISDIKVRG 295
Cdd:smart00136 178 LEGR------PSATD-------FDNSPVLQEWVTATNIRVRLTRLRTlgDELMDDRPEvTRRYYYAISDIAVGG 238
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 296-342 7.70e-08

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 48.50  E-value: 7.70e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1046872265 296 RCKCNLHATMCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
Cdd:cd00055     1 PCDCNGHGSLSGQcDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGG 48
Laminin_EGF pfam00053
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
 297-341 4.94e-05

Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.


Pssm-ID: 395007  Cd Length: 49  Bit Score: 40.41  E-value: 4.94e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1046872265 297 CKCNLHATM---CvyDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPG 341
Cdd:pfam00053   1 CDCNPHGSLsdtC--DPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPP 46
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 373-397 8.32e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.85  E-value: 8.32e-04
                          10        20
                  ....*....|....*....|....*...
gi 1046872265 373 CQNGGTCHNNV---RCVCPDAYTGILCE 397
Cdd:cd00054    11 CQNGGTCVNTVgsyRCSCPPGYTGRNCE 38
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
297-338 1.08e-03

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 36.91  E-value: 1.08e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1046872265  297 CKCNLHATMCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Cdd:smart00180   1 CDCDPGGSASGTcDPDTGQCECKPNVTGRRCDRCAPGYYGDGP 43
 
Name Accession Description Interval E-value
Laminin_N pfam00055
Laminin N-terminal (Domain VI);
50-295 1.56e-77

Laminin N-terminal (Domain VI);


Pssm-ID: 459653  Cd Length: 230  Bit Score: 240.56  E-value: 1.56e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265  50 CQPESTDMTKYLKVKldpPDITCG-DPPESFCAMGNP---YMCNnECDASTPELAHPPELMFDFEGRHPSTFWQSATWke 125
Cdd:pfam00055   1 CYPAFGNLAFGREVS---ATSTCGlNGPERYCILSGLeggKKCF-ICDSRDPHNSHPPSNLTDSNNGTNETWWQSETG-- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265 126 YPKPLQVNITLSWSKTIELTDnIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHtvlEII 205
Cdd:pfam00055  75 VIQYENVNLTLDLGKEFHFTY-LILKFKSPRPAAMVLERSTDFGKTWQPYQYFASDCRRTFGRPSGPSRGIKDD---EVI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265 206 CTEEYSTGY-STNSKIIhfeikdrFAFFAGPRLRNMAslygqlDTTKKLRDFFTVTDLRIRLLRPA--VGEIFVDELHLA 282
Cdd:pfam00055 151 CTSEYSDISpLTGGEVI-------FSTLEGRPSANIF------DYSPELQDWLTATNIRIRLLRLHtlGDELLDDPSVLR 217

                         250
                  ....*....|...
gi 1046872265 283 RYFYAISDIKVRG 295
Cdd:pfam00055 218 KYYYAISDISVGG 230
LamNT smart00136
Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related ...
 71-295 2.00e-40

Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.


Pssm-ID: 214532  Cd Length: 238  Bit Score: 144.43  E-value: 2.00e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265   71 TCGDP-PESFCAMgNPYMCNNE----CDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKplQVNITLSWSKTIELT 145
Cdd:smart00136  25 TCGEPgPERYCKL-VGHTEQGKkcdyCDARNPRRSHPAENLTDGNNPNNPTWWQSEPLSNGPQ--NVNLTLDLGKEFHVT 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046872265  146 dNIVITFESGRPDQMILEKSlDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHTvlEIICTEEYS-TGYSTNSKIIHFE 224
Cdd:smart00136 102 -YVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNED--EVICTSEYSdIVPLEGGEIAFSL 177

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046872265  225 IKDRfaffagPRLRNmaslygqLDTTKKLRDFFTVTDLRIRLLRPAV--GEIFVDELH-LARYFYAISDIKVRG 295
Cdd:smart00136 178 LEGR------PSATD-------FDNSPVLQEWVTATNIRVRLTRLRTlgDELMDDRPEvTRRYYYAISDIAVGG 238
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 296-342 7.70e-08

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 48.50  E-value: 7.70e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1046872265 296 RCKCNLHATMCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
Cdd:cd00055     1 PCDCNGHGSLSGQcDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGG 48
Laminin_EGF pfam00053
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
 297-341 4.94e-05

Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.


Pssm-ID: 395007  Cd Length: 49  Bit Score: 40.41  E-value: 4.94e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1046872265 297 CKCNLHATM---CvyDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPG 341
Cdd:pfam00053   1 CDCNPHGSLsdtC--DPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPP 46
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 373-397 8.32e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.85  E-value: 8.32e-04
                          10        20
                  ....*....|....*....|....*...
gi 1046872265 373 CQNGGTCHNNV---RCVCPDAYTGILCE 397
Cdd:cd00054    11 CQNGGTCVNTVgsyRCSCPPGYTGRNCE 38
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
297-338 1.08e-03

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 36.91  E-value: 1.08e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1046872265  297 CKCNLHATMCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Cdd:smart00180   1 CDCDPGGSASGTcDPDTGQCECKPNVTGRRCDRCAPGYYGDGP 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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