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Conserved domains on  [gi|1040696600|ref|XP_017212829|]
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properdin isoform X1 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TSR pfam18487
Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. ...
21-68 4.09e-12

Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. Properdin, also known as factor P (fP), is a glycoprotein constructed from a common pool of structure units or modules, which are homologous to the thrombospondin type 1 repeat, TSR. It is positive regulator of the complement system that stabilizes the alternative pathway C3-convertase C3bBb. Properdin also inhibits the factor H-mediated cleavage of C3b by factor I. In addition, properdin acts as a pattern recognition molecule capable of identifying and interacting with microbial surfaces, apoptotic cells, and necrotic cells. However this role of pattern recognition is controversial. Studies indicate that this domain is a TSR variants. It is present at the N-terminal of properdin and has been denoted as TSR-0. It is suggested that the TSR-0 domain of properdin which possesses only the six Cys residues and no CWR-layered motif (which is usually found in other TSR domains) may constitute a truncated TSR domain.


:

Pssm-ID: 408280  Cd Length: 50  Bit Score: 60.77  E-value: 4.09e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1040696600  21 QMVQCFSAFSISTGKCADLLGE-IEKDFCCINPSYGFAEADGV-CRSCGH 68
Cdd:pfam18487   1 DPVLCFTQFEESSGKCKGLLGGgVSVEDCCLNPAYGFQEPGGGlCQSCRS 50
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
127-179 2.93e-08

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 49.89  E-value: 2.93e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1040696600  127 WSKWGNWQPCSVTCENGQKKRQRACSNPAPKCGGS-CSGEPQEIEPCSADtVCP 179
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGpCTGEDVETRACNEQ-PCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
71-120 5.80e-06

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 43.34  E-value: 5.80e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1040696600   71 WSEWSSWSQCSVSCTEGVTQRRRFCYGNGNCSDPEDLG--TIQTKPCVKKDC 120
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTgeDVETRACNEQPC 52
TSP1 super family cl15278
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
362-437 1.88e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


The actual alignment was detected with superfamily member PTZ00087:

Pssm-ID: 472794  Cd Length: 340  Bit Score: 43.40  E-value: 1.88e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1040696600 362 IDKCDMeaILSEWSEWSYCKPDCGQ-DSKQTRSRKCVpdiseyqsddyslfygKPVINCEKvKDETETRPCK-NVPQC 437
Cdd:PTZ00087  226 IEKKNM--FYTEWGEWSNCSMECDHpDNVQIRERKCA----------------HPSGDCFK-GDLKETRPCQvPLPPC 284
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
184-244 2.85e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 38.72  E-value: 2.85e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040696600  184 WSTWGNWGRCPVTCieeGRNTQkeVRTRTCTNPSPStaPPGRFCEGSEKDTRPCSGLPfCP 244
Cdd:smart00209   1 WSEWSEWSPCSVTC---GGGVQ--TRTRSCCSPPPQ--NGGGPCTGEDVETRACNEQP-CP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
257-302 1.44e-03

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 36.80  E-value: 1.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1040696600  257 ACSVTCGVGRQMQSRICDSPSPKHGGKPCHGIEQKSGLCRTlAKCP 302
Cdd:smart00209   9 PCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNE-QPCP 53
 
Name Accession Description Interval E-value
TSR pfam18487
Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. ...
21-68 4.09e-12

Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. Properdin, also known as factor P (fP), is a glycoprotein constructed from a common pool of structure units or modules, which are homologous to the thrombospondin type 1 repeat, TSR. It is positive regulator of the complement system that stabilizes the alternative pathway C3-convertase C3bBb. Properdin also inhibits the factor H-mediated cleavage of C3b by factor I. In addition, properdin acts as a pattern recognition molecule capable of identifying and interacting with microbial surfaces, apoptotic cells, and necrotic cells. However this role of pattern recognition is controversial. Studies indicate that this domain is a TSR variants. It is present at the N-terminal of properdin and has been denoted as TSR-0. It is suggested that the TSR-0 domain of properdin which possesses only the six Cys residues and no CWR-layered motif (which is usually found in other TSR domains) may constitute a truncated TSR domain.


Pssm-ID: 408280  Cd Length: 50  Bit Score: 60.77  E-value: 4.09e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1040696600  21 QMVQCFSAFSISTGKCADLLGE-IEKDFCCINPSYGFAEADGV-CRSCGH 68
Cdd:pfam18487   1 DPVLCFTQFEESSGKCKGLLGGgVSVEDCCLNPAYGFQEPGGGlCQSCRS 50
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
127-179 2.93e-08

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 49.89  E-value: 2.93e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1040696600  127 WSKWGNWQPCSVTCENGQKKRQRACSNPAPKCGGS-CSGEPQEIEPCSADtVCP 179
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGpCTGEDVETRACNEQ-PCP 53
TSP_1 pfam00090
Thrombospondin type 1 domain;
128-175 3.37e-08

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 49.72  E-value: 3.37e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1040696600 128 SKWGNWQPCSVTCENGQKKRQRACSNPAPkCGGSCSGEPQEIEPCSAD 175
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP-GGEPCTGDDIETQACKMD 47
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
71-120 5.80e-06

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 43.34  E-value: 5.80e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1040696600   71 WSEWSSWSQCSVSCTEGVTQRRRFCYGNGNCSDPEDLG--TIQTKPCVKKDC 120
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTgeDVETRACNEQPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
72-120 1.12e-05

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 42.41  E-value: 1.12e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1040696600  72 SEWSSWSQCSVSCTEGVTQRRRFCYGNGNCSDPEDLGTIQTKPCVKKDC 120
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKMDKC 49
PTZ00087 PTZ00087
thrombosponding-related protein; Provisional
362-437 1.88e-04

thrombosponding-related protein; Provisional


Pssm-ID: 185438  Cd Length: 340  Bit Score: 43.40  E-value: 1.88e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1040696600 362 IDKCDMeaILSEWSEWSYCKPDCGQ-DSKQTRSRKCVpdiseyqsddyslfygKPVINCEKvKDETETRPCK-NVPQC 437
Cdd:PTZ00087  226 IEKKNM--FYTEWGEWSNCSMECDHpDNVQIRERKCA----------------HPSGDCFK-GDLKETRPCQvPLPPC 284
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
184-244 2.85e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 38.72  E-value: 2.85e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040696600  184 WSTWGNWGRCPVTCieeGRNTQkeVRTRTCTNPSPStaPPGRFCEGSEKDTRPCSGLPfCP 244
Cdd:smart00209   1 WSEWSEWSPCSVTC---GGGVQ--TRTRSCCSPPPQ--NGGGPCTGEDVETRACNEQP-CP 53
PTZ00087 PTZ00087
thrombosponding-related protein; Provisional
184-243 3.81e-04

thrombosponding-related protein; Provisional


Pssm-ID: 185438  Cd Length: 340  Bit Score: 42.24  E-value: 3.81e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040696600 184 WSTWGNWGRCPVTCiEEGRNTQkeVRTRTCTNPSpstappGRFCEGSEKDTRPCS-GLPFC 243
Cdd:PTZ00087  233 YTEWGEWSNCSMEC-DHPDNVQ--IRERKCAHPS------GDCFKGDLKETRPCQvPLPPC 284
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
257-302 1.44e-03

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 36.80  E-value: 1.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1040696600  257 ACSVTCGVGRQMQSRICDSPSPKHGGKPCHGIEQKSGLCRTlAKCP 302
Cdd:smart00209   9 PCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNE-QPCP 53
PTZ00087 PTZ00087
thrombosponding-related protein; Provisional
127-172 2.05e-03

thrombosponding-related protein; Provisional


Pssm-ID: 185438  Cd Length: 340  Bit Score: 39.93  E-value: 2.05e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1040696600 127 WSKWGNWQPCSVTCE--NGQKKRQRACSNPAPKCggsCSGEPQEIEPC 172
Cdd:PTZ00087  233 YTEWGEWSNCSMECDhpDNVQIRERKCAHPSGDC---FKGDLKETRPC 277
 
Name Accession Description Interval E-value
TSR pfam18487
Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. ...
21-68 4.09e-12

Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. Properdin, also known as factor P (fP), is a glycoprotein constructed from a common pool of structure units or modules, which are homologous to the thrombospondin type 1 repeat, TSR. It is positive regulator of the complement system that stabilizes the alternative pathway C3-convertase C3bBb. Properdin also inhibits the factor H-mediated cleavage of C3b by factor I. In addition, properdin acts as a pattern recognition molecule capable of identifying and interacting with microbial surfaces, apoptotic cells, and necrotic cells. However this role of pattern recognition is controversial. Studies indicate that this domain is a TSR variants. It is present at the N-terminal of properdin and has been denoted as TSR-0. It is suggested that the TSR-0 domain of properdin which possesses only the six Cys residues and no CWR-layered motif (which is usually found in other TSR domains) may constitute a truncated TSR domain.


Pssm-ID: 408280  Cd Length: 50  Bit Score: 60.77  E-value: 4.09e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1040696600  21 QMVQCFSAFSISTGKCADLLGE-IEKDFCCINPSYGFAEADGV-CRSCGH 68
Cdd:pfam18487   1 DPVLCFTQFEESSGKCKGLLGGgVSVEDCCLNPAYGFQEPGGGlCQSCRS 50
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
127-179 2.93e-08

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 49.89  E-value: 2.93e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1040696600  127 WSKWGNWQPCSVTCENGQKKRQRACSNPAPKCGGS-CSGEPQEIEPCSADtVCP 179
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGpCTGEDVETRACNEQ-PCP 53
TSP_1 pfam00090
Thrombospondin type 1 domain;
128-175 3.37e-08

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 49.72  E-value: 3.37e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1040696600 128 SKWGNWQPCSVTCENGQKKRQRACSNPAPkCGGSCSGEPQEIEPCSAD 175
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP-GGEPCTGDDIETQACKMD 47
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
71-120 5.80e-06

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 43.34  E-value: 5.80e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1040696600   71 WSEWSSWSQCSVSCTEGVTQRRRFCYGNGNCSDPEDLG--TIQTKPCVKKDC 120
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTgeDVETRACNEQPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
72-120 1.12e-05

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 42.41  E-value: 1.12e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1040696600  72 SEWSSWSQCSVSCTEGVTQRRRFCYGNGNCSDPEDLGTIQTKPCVKKDC 120
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKMDKC 49
PTZ00087 PTZ00087
thrombosponding-related protein; Provisional
362-437 1.88e-04

thrombosponding-related protein; Provisional


Pssm-ID: 185438  Cd Length: 340  Bit Score: 43.40  E-value: 1.88e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1040696600 362 IDKCDMeaILSEWSEWSYCKPDCGQ-DSKQTRSRKCVpdiseyqsddyslfygKPVINCEKvKDETETRPCK-NVPQC 437
Cdd:PTZ00087  226 IEKKNM--FYTEWGEWSNCSMECDHpDNVQIRERKCA----------------HPSGDCFK-GDLKETRPCQvPLPPC 284
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
184-244 2.85e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 38.72  E-value: 2.85e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040696600  184 WSTWGNWGRCPVTCieeGRNTQkeVRTRTCTNPSPStaPPGRFCEGSEKDTRPCSGLPfCP 244
Cdd:smart00209   1 WSEWSEWSPCSVTC---GGGVQ--TRTRSCCSPPPQ--NGGGPCTGEDVETRACNEQP-CP 53
PTZ00087 PTZ00087
thrombosponding-related protein; Provisional
184-243 3.81e-04

thrombosponding-related protein; Provisional


Pssm-ID: 185438  Cd Length: 340  Bit Score: 42.24  E-value: 3.81e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040696600 184 WSTWGNWGRCPVTCiEEGRNTQkeVRTRTCTNPSpstappGRFCEGSEKDTRPCS-GLPFC 243
Cdd:PTZ00087  233 YTEWGEWSNCSMEC-DHPDNVQ--IRERKCAHPS------GDCFKGDLKETRPCQvPLPPC 284
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
257-302 1.44e-03

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 36.80  E-value: 1.44e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1040696600  257 ACSVTCGVGRQMQSRICDSPSPKHGGKPCHGIEQKSGLCRTlAKCP 302
Cdd:smart00209   9 PCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNE-QPCP 53
PTZ00087 PTZ00087
thrombosponding-related protein; Provisional
127-172 2.05e-03

thrombosponding-related protein; Provisional


Pssm-ID: 185438  Cd Length: 340  Bit Score: 39.93  E-value: 2.05e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1040696600 127 WSKWGNWQPCSVTCE--NGQKKRQRACSNPAPKCggsCSGEPQEIEPC 172
Cdd:PTZ00087  233 YTEWGEWSNCSMECDhpDNVQIRERKCAHPSGDC---FKGDLKETRPC 277
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
72-93 2.35e-03

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 36.10  E-value: 2.35e-03
                          10        20
                  ....*....|....*....|..
gi 1040696600  72 SEWSSWSQCSVSCTEGVTQRRR 93
Cdd:pfam19028   4 SEWSEWSECSVTCGGGVQTRTR 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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