properdin isoform X1 [Danio rerio]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
TSR | pfam18487 | Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. ... |
21-68 | 4.09e-12 | ||
Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. Properdin, also known as factor P (fP), is a glycoprotein constructed from a common pool of structure units or modules, which are homologous to the thrombospondin type 1 repeat, TSR. It is positive regulator of the complement system that stabilizes the alternative pathway C3-convertase C3bBb. Properdin also inhibits the factor H-mediated cleavage of C3b by factor I. In addition, properdin acts as a pattern recognition molecule capable of identifying and interacting with microbial surfaces, apoptotic cells, and necrotic cells. However this role of pattern recognition is controversial. Studies indicate that this domain is a TSR variants. It is present at the N-terminal of properdin and has been denoted as TSR-0. It is suggested that the TSR-0 domain of properdin which possesses only the six Cys residues and no CWR-layered motif (which is usually found in other TSR domains) may constitute a truncated TSR domain. : Pssm-ID: 408280 Cd Length: 50 Bit Score: 60.77 E-value: 4.09e-12
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
127-179 | 2.93e-08 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. : Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 49.89 E-value: 2.93e-08
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
71-120 | 5.80e-06 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. : Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 43.34 E-value: 5.80e-06
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TSP1 super family | cl15278 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
362-437 | 1.88e-04 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. The actual alignment was detected with superfamily member PTZ00087: Pssm-ID: 472794 Cd Length: 340 Bit Score: 43.40 E-value: 1.88e-04
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
184-244 | 2.85e-04 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. : Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 38.72 E-value: 2.85e-04
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
257-302 | 1.44e-03 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. : Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 36.80 E-value: 1.44e-03
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Name | Accession | Description | Interval | E-value | ||
TSR | pfam18487 | Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. ... |
21-68 | 4.09e-12 | ||
Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. Properdin, also known as factor P (fP), is a glycoprotein constructed from a common pool of structure units or modules, which are homologous to the thrombospondin type 1 repeat, TSR. It is positive regulator of the complement system that stabilizes the alternative pathway C3-convertase C3bBb. Properdin also inhibits the factor H-mediated cleavage of C3b by factor I. In addition, properdin acts as a pattern recognition molecule capable of identifying and interacting with microbial surfaces, apoptotic cells, and necrotic cells. However this role of pattern recognition is controversial. Studies indicate that this domain is a TSR variants. It is present at the N-terminal of properdin and has been denoted as TSR-0. It is suggested that the TSR-0 domain of properdin which possesses only the six Cys residues and no CWR-layered motif (which is usually found in other TSR domains) may constitute a truncated TSR domain. Pssm-ID: 408280 Cd Length: 50 Bit Score: 60.77 E-value: 4.09e-12
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
127-179 | 2.93e-08 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 49.89 E-value: 2.93e-08
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TSP_1 | pfam00090 | Thrombospondin type 1 domain; |
128-175 | 3.37e-08 | ||
Thrombospondin type 1 domain; Pssm-ID: 459668 [Multi-domain] Cd Length: 49 Bit Score: 49.72 E-value: 3.37e-08
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
71-120 | 5.80e-06 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 43.34 E-value: 5.80e-06
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TSP_1 | pfam00090 | Thrombospondin type 1 domain; |
72-120 | 1.12e-05 | ||
Thrombospondin type 1 domain; Pssm-ID: 459668 [Multi-domain] Cd Length: 49 Bit Score: 42.41 E-value: 1.12e-05
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PTZ00087 | PTZ00087 | thrombosponding-related protein; Provisional |
362-437 | 1.88e-04 | ||
thrombosponding-related protein; Provisional Pssm-ID: 185438 Cd Length: 340 Bit Score: 43.40 E-value: 1.88e-04
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
184-244 | 2.85e-04 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 38.72 E-value: 2.85e-04
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PTZ00087 | PTZ00087 | thrombosponding-related protein; Provisional |
184-243 | 3.81e-04 | ||
thrombosponding-related protein; Provisional Pssm-ID: 185438 Cd Length: 340 Bit Score: 42.24 E-value: 3.81e-04
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
257-302 | 1.44e-03 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 36.80 E-value: 1.44e-03
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PTZ00087 | PTZ00087 | thrombosponding-related protein; Provisional |
127-172 | 2.05e-03 | ||
thrombosponding-related protein; Provisional Pssm-ID: 185438 Cd Length: 340 Bit Score: 39.93 E-value: 2.05e-03
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Name | Accession | Description | Interval | E-value | ||
TSR | pfam18487 | Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. ... |
21-68 | 4.09e-12 | ||
Thrombospondin type 1 repeat; This is a thrombospondin type I repeat (TSR) found in properdin. Properdin, also known as factor P (fP), is a glycoprotein constructed from a common pool of structure units or modules, which are homologous to the thrombospondin type 1 repeat, TSR. It is positive regulator of the complement system that stabilizes the alternative pathway C3-convertase C3bBb. Properdin also inhibits the factor H-mediated cleavage of C3b by factor I. In addition, properdin acts as a pattern recognition molecule capable of identifying and interacting with microbial surfaces, apoptotic cells, and necrotic cells. However this role of pattern recognition is controversial. Studies indicate that this domain is a TSR variants. It is present at the N-terminal of properdin and has been denoted as TSR-0. It is suggested that the TSR-0 domain of properdin which possesses only the six Cys residues and no CWR-layered motif (which is usually found in other TSR domains) may constitute a truncated TSR domain. Pssm-ID: 408280 Cd Length: 50 Bit Score: 60.77 E-value: 4.09e-12
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
127-179 | 2.93e-08 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 49.89 E-value: 2.93e-08
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TSP_1 | pfam00090 | Thrombospondin type 1 domain; |
128-175 | 3.37e-08 | ||
Thrombospondin type 1 domain; Pssm-ID: 459668 [Multi-domain] Cd Length: 49 Bit Score: 49.72 E-value: 3.37e-08
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
71-120 | 5.80e-06 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 43.34 E-value: 5.80e-06
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TSP_1 | pfam00090 | Thrombospondin type 1 domain; |
72-120 | 1.12e-05 | ||
Thrombospondin type 1 domain; Pssm-ID: 459668 [Multi-domain] Cd Length: 49 Bit Score: 42.41 E-value: 1.12e-05
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PTZ00087 | PTZ00087 | thrombosponding-related protein; Provisional |
362-437 | 1.88e-04 | ||
thrombosponding-related protein; Provisional Pssm-ID: 185438 Cd Length: 340 Bit Score: 43.40 E-value: 1.88e-04
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
184-244 | 2.85e-04 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 38.72 E-value: 2.85e-04
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PTZ00087 | PTZ00087 | thrombosponding-related protein; Provisional |
184-243 | 3.81e-04 | ||
thrombosponding-related protein; Provisional Pssm-ID: 185438 Cd Length: 340 Bit Score: 42.24 E-value: 3.81e-04
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TSP1 | smart00209 | Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. |
257-302 | 1.44e-03 | ||
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Pssm-ID: 214559 [Multi-domain] Cd Length: 53 Bit Score: 36.80 E-value: 1.44e-03
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PTZ00087 | PTZ00087 | thrombosponding-related protein; Provisional |
127-172 | 2.05e-03 | ||
thrombosponding-related protein; Provisional Pssm-ID: 185438 Cd Length: 340 Bit Score: 39.93 E-value: 2.05e-03
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TSP1_spondin | pfam19028 | Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ... |
72-93 | 2.35e-03 | ||
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain. Pssm-ID: 465948 Cd Length: 52 Bit Score: 36.10 E-value: 2.35e-03
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Blast search parameters | ||||
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